Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 69 of 318
Found at i:24384230 original size:41 final size:41
Alignment explanation
Indices: 24384153--24384230 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
24384143 TTTGTATCTC
* * *
24384153 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
24384194 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
24384231 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:24403042 original size:12 final size:12
Alignment explanation
Indices: 24403021--24403050 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
24403011 GGGCAACTTG
*
24403021 CAGTCAGTCAGT
1 CAGTCGGTCAGT
24403033 CAGTCGGTCAGT
1 CAGTCGGTCAGT
24403045 CAGTCG
1 CAGTCG
24403051 AGAGGAGCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (12 bp):
CAGTCGGTCAGT
Found at i:24416540 original size:36 final size:35
Alignment explanation
Indices: 24416500--24416572 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
24416490 TATTTTGTCT
*
24416500 TTTCTTAGATTT-TTTTCTTT-TTTATGTTTTATATTA
1 TTTCTTA-ATTTATTTTCTTTATTTA--ATTTATATTA
*
24416536 TTTCTTAATTTATTTTGTTTATTTAATTTATATTA
1 TTTCTTAATTTATTTTCTTTATTTAATTTATATTA
24416571 TT
1 TT
24416573 AATTTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
35 15 0.45
36 14 0.42
37 4 0.12
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (35 bp):
TTTCTTAATTTATTTTCTTTATTTAATTTATATTA
Found at i:24416577 original size:18 final size:17
Alignment explanation
Indices: 24416527--24416579 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 17
24416517 TTTTTTATGT
24416527 TTTATATTATT-TCTTAA
1 TTTATATTATTAT-TTAA
* *
24416544 TTTATTTTGTTTATTTAA
1 TTTATATT-ATTATTTAA
24416562 TTTATATTATTAATTTAA
1 TTTATATTATT-ATTTAA
24416580 AAATTGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 9 0.31
18 19 0.66
19 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTATATTATTATTTAA
Found at i:24417892 original size:49 final size:50
Alignment explanation
Indices: 24417839--24418042 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
24417829 CTTCGTTTCT
*
24417839 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
24417888 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
24417937 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
24417995 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
24418043 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:24418009 original size:58 final size:59
Alignment explanation
Indices: 24417923--24418041 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
24417913 TACACGAAAT
24417923 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
24417981 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
24418040 CA
1 CA
24418042 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:24418022 original size:28 final size:28
Alignment explanation
Indices: 24417932--24418022 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
24417922 TCACATATCA
24417932 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
24417960 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
24417990 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
24418018 CTTAC
1 CTTAC
24418023 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:24419124 original size:28 final size:29
Alignment explanation
Indices: 24419056--24419124 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 29
24419046 GTGACTATTA
24419056 ATAAAT-TTAAATA-TAAATATAAATTTT
1 ATAAATATTAAATATTAAATATAAATTTT
* *
24419083 -TAAA-ATATATATATTAAATAT-TATTTT
1 ATAAATAT-TAAATATTAAATATAAATTTT
24419110 ATAAATATTAAATAT
1 ATAAATATTAAATAT
24419125 ATTTTTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
26 5 0.15
27 10 0.29
28 17 0.50
29 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
ATAAATATTAAATATTAAATATAAATTTT
Found at i:24419132 original size:23 final size:21
Alignment explanation
Indices: 24419088--24419129 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
24419078 ATTTTTAAAA
*
24419088 TATATATATTAAATATTATTT
1 TATAAATATTAAATATTATTT
24419109 TATAAATATTAAATA-TATTT
1 TATAAATATTAAATATTATTT
24419129 T
1 T
24419130 TTTTACTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TATAAATATTAAATATTATTT
Found at i:24419294 original size:26 final size:26
Alignment explanation
Indices: 24419264--24419327 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
24419254 TTTTAAATAC
*
24419264 AATTTTTAAATACAT-TAAAAAATTAT
1 AATTTTTAAATA-ATATAAAAAATCAT
*
24419290 AATTTTT-AATAATATAATAAATCAT
1 AATTTTTAAATAATATAAAAAATCAT
24419315 AATATTTTAAATA
1 AAT-TTTTAAATA
24419328 TTTTTTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 2 0.06
25 16 0.48
26 11 0.33
27 4 0.12
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (26 bp):
AATTTTTAAATAATATAAAAAATCAT
Found at i:24419371 original size:32 final size:32
Alignment explanation
Indices: 24419326--24419395 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
24419316 ATATTTTAAA
* *
24419326 TATTTTTTAAAATTTTGTCTTTTTCCTTTTTT
1 TATTTTTTAAAATTTTATCTTTTTCCTTATTT
* * *
24419358 TATTTTTTGAAATTTTATGTTTTTTCTTATTT
1 TATTTTTTAAAATTTTATCTTTTTCCTTATTT
24419390 TATTTT
1 TATTTT
24419396 GTTTATTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.17, C:0.06, G:0.04, T:0.73
Consensus pattern (32 bp):
TATTTTTTAAAATTTTATCTTTTTCCTTATTT
Found at i:24419949 original size:18 final size:18
Alignment explanation
Indices: 24419899--24419950 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
24419889 TCATCGATTA
*
24419899 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
* *
24419917 AAATAAGTAAAATAAATT
1 AAATAAATAATATAAATT
24419935 AAGA-AAATAATATAAA
1 AA-ATAAATAATATAAA
24419951 ACTTAAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:24419988 original size:12 final size:12
Alignment explanation
Indices: 24419973--24420021 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
24419963 TCTAAAAAAG
24419973 AGAAAAAATATA
1 AGAAAAAATATA
*
24419985 AGAAAAAATGTA
1 AGAAAAAATATA
*
24419997 A-AAAAAGTA-A
1 AGAAAAAATATA
24420007 A-AAAAAATATA
1 AGAAAAAATATA
24420018 AGAA
1 AGAA
24420022 CCTGACAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 9 0.29
11 8 0.26
12 14 0.45
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (12 bp):
AGAAAAAATATA
Found at i:24433678 original size:29 final size:28
Alignment explanation
Indices: 24433642--24433719 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
24433632 TCATGAGATT
24433642 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
24433672 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
24433699 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
24433720 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:24433937 original size:174 final size:174
Alignment explanation
Indices: 24433672--24434172 Score: 923
Period size: 174 Copynumber: 2.9 Consensus size: 174
24433662 AAATTGTACA
* *
24433672 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
24433737 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACTGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
24433802 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTCAAATGCATG
*
24433846 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGAGTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
24433911 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
24433976 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTCAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTCAAATGCATG
24434020 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
24434085 TGTGCGAACTCAATATATA-TTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
24434149 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
24434173 ACCTTGAGTT
Statistics
Matches: 318, Mismatches: 9, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
173 67 0.21
174 251 0.79
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTCAAATGCATG
Found at i:24442074 original size:39 final size:40
Alignment explanation
Indices: 24442029--24442200 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
24442019 GCTCCTCGTT
* * *
24442029 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
24442069 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
24442108 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
24442148 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
24442188 CAAATGCCTTCGG
1 CAAATGCCTTCGG
24442201 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:24442129 original size:40 final size:39
Alignment explanation
Indices: 24442031--24442253 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
24442021 TCCTCGTTCA
* * * *
24442031 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
24442070 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
24442109 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
24442149 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
24442189 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
24442230 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24442254 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:24442213 original size:80 final size:79
Alignment explanation
Indices: 24442029--24442253 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
24442019 GCTCCTCGTT
* * * * *
24442029 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
24442093 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
24442108 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
24442173 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
24442188 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
24442252 GA
63 GA
24442254 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:24442262 original size:41 final size:41
Alignment explanation
Indices: 24442185--24442262 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
24442175 TTTGTATCTC
* * *
24442185 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
24442226 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
24442263 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:24449570 original size:21 final size:21
Alignment explanation
Indices: 24449546--24449585 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
24449536 ACGCGTCTGA
**
24449546 CACCAGCTGCCACCGCCCAAG
1 CACCAGCCACCACCGCCCAAG
*
24449567 CACCTGCCACCACCGCCCA
1 CACCAGCCACCACCGCCCA
24449586 TGCCCACTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.57, G:0.15, T:0.05
Consensus pattern (21 bp):
CACCAGCCACCACCGCCCAAG
Found at i:24449792 original size:18 final size:19
Alignment explanation
Indices: 24449765--24449801 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
24449755 TTTCTTCTTC
*
24449765 GTTTTCTCTTA-TTTATTT
1 GTTTTATCTTATTTTATTT
24449783 GTTTTATCTTATTTTATTT
1 GTTTTATCTTATTTTATTT
24449802 TATTTTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.14, C:0.08, G:0.05, T:0.73
Consensus pattern (19 bp):
GTTTTATCTTATTTTATTT
Found at i:24450497 original size:25 final size:23
Alignment explanation
Indices: 24450455--24450507 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
24450445 AACTTTATTT
*
24450455 TTATTATTAATTCTATTATTGCTA
1 TTATTATTAATTCCATTATT-CTA
24450479 CTTATTATT-ATTGCCATTATTCTA
1 -TTATTATTAATT-CCATTATTCTA
24450503 TTATT
1 TTATT
24450508 TCTTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 6 0.23
25 15 0.58
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.58
Consensus pattern (23 bp):
TTATTATTAATTCCATTATTCTA
Found at i:24450612 original size:23 final size:23
Alignment explanation
Indices: 24450575--24450623 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
24450565 ATAATCATTA
* *
24450575 TTATTCTTTATTTGTTATTGTTG
1 TTATTCTTTATTTGTCATTATTG
24450598 TTATTCTATTA-TTGTCATTATTG
1 TTATTCT-TTATTTGTCATTATTG
24450621 TTA
1 TTA
24450624 ATATTGGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 20 0.87
24 3 0.13
ACGTcount: A:0.18, C:0.06, G:0.10, T:0.65
Consensus pattern (23 bp):
TTATTCTTTATTTGTCATTATTG
Found at i:24453159 original size:19 final size:20
Alignment explanation
Indices: 24453119--24453162 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
24453109 GTTTCTTTTG
* *
24453119 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
24453138 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
24453157 GCATTA
1 GCATTA
24453163 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:24457429 original size:46 final size:46
Alignment explanation
Indices: 24457367--24457867 Score: 214
Period size: 46 Copynumber: 11.2 Consensus size: 46
24457357 ATAATTCTAT
*
24457367 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * *
24457413 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * *
24457459 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAAT-TCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GATCT-TAC
*
24457501 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * *
24457547 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * * *
24457593 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
24457635 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * *
24457681 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * * *
24457727 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
* * * *
24457769 CTCCCTGTATTTGGCAGTGAAATAGATAGAAGATTACAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* ** * * * *
24457815 CTTCCTGTATTTGGCAG-CAAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
24457861 CTCCCTG
1 CTCCCTG
24457868 ATTACAGTGG
Statistics
Matches: 314, Mismatches: 114, Indels: 54
0.65 0.24 0.11
Matches are distributed among these distances:
41 8 0.03
42 32 0.10
43 30 0.10
44 6 0.02
45 61 0.19
46 167 0.53
47 10 0.03
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:24457474 original size:134 final size:134
Alignment explanation
Indices: 24457256--24457907 Score: 1205
Period size: 134 Copynumber: 4.9 Consensus size: 134
24457246 AGATCAGTAA
24457256 AGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
1 AGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
24457321 TTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTG
66 TTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTG
24457386 GAAT
131 GAAT
24457390 AGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
1 AGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
24457455 TTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTG
66 TTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTG
24457520 GAAT
131 GAAT
24457524 AGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
1 AGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
*
24457589 TTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTG
66 TTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTG
24457654 GAAT
131 GAAT
24457658 AGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
1 AGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
*
24457723 TTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTG
66 TTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTG
*
24457788 AAAT
131 GAAT
* * * *
24457792 AGATAGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGATT
1 AGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
** * *
24457857 TTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTATCTCCC
66 TTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCC
24457908 GGGGCAAGAA
Statistics
Matches: 507, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
134 507 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
TTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTG
GAAT
Found at i:24458152 original size:132 final size:132
Alignment explanation
Indices: 24457915--24458651 Score: 994
Period size: 132 Copynumber: 5.6 Consensus size: 132
24457905 CCCGGGGCAA
* * **
24457915 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
*
24457980 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
24458045 GT
131 GT
* * *
24458047 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
*
24458112 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCGTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
*
24458177 AT
131 GT
* *
24458179 GAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
*
24458244 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCGTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
*
24458309 AT
131 GT
* *
24458311 GAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
* *
24458376 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGCATTAGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
24458441 GT
131 GT
* * * * * * * *
24458443 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGACATCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGATA-CA
* * * * * * * ***
24458507 GATCCTATTTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTG
64 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
* *
24458570 GTGGC
129 G-CGT
* ** * * * * *
24458575 GAAGTAGATCGAAGAAAGCAGATATTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGATA-CA
24458640 GATCTTGTCTTC
64 GATCTTGTCTTC
24458652 ATTGGCGTGA
Statistics
Matches: 548, Mismatches: 53, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
131 21 0.04
132 477 0.87
133 50 0.09
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:24458317 original size:176 final size:177
Alignment explanation
Indices: 24457915--24458771 Score: 903
Period size: 176 Copynumber: 4.9 Consensus size: 177
24457905 CCCGGGGCAA
* * * * * * * * * * **
24457915 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACG-ACGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAATCAG
* * * * * * * ***
24457979 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG
66 ATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGG
* * * * * * * * *
24458044 -CGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-
129 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGT
* * * *** *** *
24458091 GAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CATGAAGTAGATCGAAGAAATCA
* * * * * * * * * * *
24458155 GATCGTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGG
65 GATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGG
* * * *
24458220 TAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGC
129 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGT
* *
24458267 GAAGTAGATCGAAGAAAGCAGATCGTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATATCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAATCAG
24458332 ATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
66 ATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
* *
24458397 GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--CATGCATTAG-CGT
131 GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCAT--ATTGGTGGT
* *
24458443 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGACATCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAATCAG
*
24458508 ATCCTATTTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
66 ATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
*
24458573 GCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCCCATATTGGTGGT
131 GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGT
* * *
24458620 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTC----ATTGGCGTGAAATAGATCGAAGATATCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAATCAG
* * * * *
24458681 ATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACGATGCAGATTTTGTTTTCCCATACTGGTG
66 ATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
* *
24458746 GTGAAGAAGATCGAAGAAAGCAGATC
131 GCGAAGTAGATCGAAGAAAGCAGATC
24458772 GACGATGGCA
Statistics
Matches: 585, Mismatches: 83, Indels: 29
0.84 0.12 0.04
Matches are distributed among these distances:
173 109 0.19
175 66 0.11
176 313 0.54
177 94 0.16
178 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (177 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAATCAG
ATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGT
Found at i:24458749 original size:128 final size:129
Alignment explanation
Indices: 24458537--24458771 Score: 330
Period size: 128 Copynumber: 1.8 Consensus size: 129
24458527 GTAGGAAGTG
* * * *
24458537 GATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTG
1 GATCGAAGATGCAGATCCTATCTTCCCATATTGGTAGCGAAGTAGACCGAAGAAAGCAGATATTG
* *
24458602 TCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATTGGCGTGAAATA
66 TCTTCCCATACTGGTGGTGAAGAAGATCGAAGAAAGCAGATCTTGTCTTCATTGGCGTGAAATA
* * * * * *
24458666 GATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGACCGACG-ATGCAGATTTT
1 GATCGAAGAT-GCAGATCCTATCTTCCCATATTGGTAGCGAAGTAGACCGAAGAAAGCAGATATT
*
24458729 GTTTTCCCATACTGGTGGTGAAGAAGATCGAAGAAAGCAGATC
65 GTCTTCCCATACTGGTGGTGAAGAAGATCGAAGAAAGCAGATC
24458772 GACGATGGCA
Statistics
Matches: 92, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
128 49 0.53
129 21 0.23
130 22 0.24
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (129 bp):
GATCGAAGATGCAGATCCTATCTTCCCATATTGGTAGCGAAGTAGACCGAAGAAAGCAGATATTG
TCTTCCCATACTGGTGGTGAAGAAGATCGAAGAAAGCAGATCTTGTCTTCATTGGCGTGAAATA
Found at i:24459244 original size:21 final size:21
Alignment explanation
Indices: 24459220--24459259 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
24459210 ACGCGTCTGA
**
24459220 CACCAGCTGCCACCGCCCAAG
1 CACCAGCCACCACCGCCCAAG
*
24459241 CACCTGCCACCACCGCCCA
1 CACCAGCCACCACCGCCCA
24459260 TGCCCACTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.57, G:0.15, T:0.05
Consensus pattern (21 bp):
CACCAGCCACCACCGCCCAAG
Found at i:24459466 original size:18 final size:19
Alignment explanation
Indices: 24459439--24459475 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
24459429 TTTCTTCTTC
*
24459439 GTTTTCTCTTA-TTTATTT
1 GTTTTATCTTATTTTATTT
24459457 GTTTTATCTTATTTTATTT
1 GTTTTATCTTATTTTATTT
24459476 TATTTTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.14, C:0.08, G:0.05, T:0.73
Consensus pattern (19 bp):
GTTTTATCTTATTTTATTT
Found at i:24460171 original size:25 final size:23
Alignment explanation
Indices: 24460129--24460181 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
24460119 AACTTTATTT
*
24460129 TTATTATTAATTCTATTATTGCTA
1 TTATTATTAATTCCATTATT-CTA
24460153 CTTATTATT-ATTGCCATTATTCTA
1 -TTATTATTAATT-CCATTATTCTA
24460177 TTATT
1 TTATT
24460182 TCTTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 6 0.23
25 15 0.58
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.58
Consensus pattern (23 bp):
TTATTATTAATTCCATTATTCTA
Found at i:24460286 original size:23 final size:23
Alignment explanation
Indices: 24460249--24460297 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
24460239 ATAATCATTA
* *
24460249 TTATTCTTTATTTGTTATTGTTG
1 TTATTCTTTATTTGTCATTATTG
24460272 TTATTCTATTA-TTGTCATTATTG
1 TTATTCT-TTATTTGTCATTATTG
24460295 TTA
1 TTA
24460298 ATATTGGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 20 0.87
24 3 0.13
ACGTcount: A:0.18, C:0.06, G:0.10, T:0.65
Consensus pattern (23 bp):
TTATTCTTTATTTGTCATTATTG
Found at i:24465569 original size:21 final size:21
Alignment explanation
Indices: 24465543--24465583 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
24465533 AGACGAGCAA
* *
24465543 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
24465564 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
24465584 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:24467522 original size:16 final size:16
Alignment explanation
Indices: 24467489--24467522 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24467479 GGAGATTGTT
* *
24467489 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
24467505 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
24467521 AA
1 AA
24467523 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:24471892 original size:26 final size:27
Alignment explanation
Indices: 24471862--24471925 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
24471852 TTATACTGAA
24471862 ATTAAGACAACA-ATAATATACAAAAT
1 ATTAAGACAACATATAATATACAAAAT
* *
24471888 ATTAAAAC-TCATTTATAATATACAAAAT
1 ATTAAGACAACA--TATAATATACAAAAT
24471916 ATTAAGACAA
1 ATTAAGACAA
24471926 ATCTCATGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
25 2 0.07
26 7 0.23
28 21 0.70
ACGTcount: A:0.58, C:0.11, G:0.03, T:0.28
Consensus pattern (27 bp):
ATTAAGACAACATATAATATACAAAAT
Found at i:24482363 original size:5 final size:5
Alignment explanation
Indices: 24482348--24482382 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
24482338 TTGTTTCTTT
*
24482348 TATATA TATAA TATAA TAGAA TATAA TATAA TATA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATA
24482383 CTTAATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:24485813 original size:28 final size:28
Alignment explanation
Indices: 24485779--24485843 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
24485769 TCAGTGTACG
* *
24485779 AAATATTGAGAATGGCACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGCA
* *
24485807 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
24485835 AAATATTGA
1 AAATATTGA
24485844 ATGATTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:24485963 original size:39 final size:39
Alignment explanation
Indices: 24485916--24486177 Score: 400
Period size: 39 Copynumber: 6.7 Consensus size: 39
24485906 GACTTTATAA
*
24485916 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
24485955 TGTTGTTATATCCGGGCTAAGTCCTGAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
24485994 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
24486033 TGGTGTTATATCCGAGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
24486072 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
24486111 TGGTGTTATATCCGGGCTAAAGTCCCGCAGG-GTTAGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
*
24486150 TGGTATTATATCCGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
24486178 CAGGTTTTGT
Statistics
Matches: 206, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 186 0.90
40 20 0.10
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:24495803 original size:19 final size:19
Alignment explanation
Indices: 24495779--24495815 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
24495769 GATATAAAGT
*
24495779 TAGGGGATTAGTTTTTTTA
1 TAGGGGATTAATTTTTTTA
*
24495798 TAGGGGCTTAATTTTTTT
1 TAGGGGATTAATTTTTTT
24495816 CCTATTTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.24, T:0.54
Consensus pattern (19 bp):
TAGGGGATTAATTTTTTTA
Found at i:24505232 original size:21 final size:21
Alignment explanation
Indices: 24505192--24505232 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24505182 GGCTCATTGA
**
24505192 CCTCATCATCATTATCATCAG
1 CCTCATCATCAACATCATCAG
*
24505213 CCTCATCATCAACATTATCA
1 CCTCATCATCAACATCATCA
24505233 ACCGGCACCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.34, G:0.02, T:0.32
Consensus pattern (21 bp):
CCTCATCATCAACATCATCAG
Found at i:24510148 original size:128 final size:128
Alignment explanation
Indices: 24509986--24510280 Score: 325
Period size: 128 Copynumber: 2.3 Consensus size: 128
24509976 TTTATATTTG
* * *
24509986 ATAAATATAATTATTTATATATACAATATATAAACATAAAACAAT-GCTATATCAATAATTGTAT
1 ATAAATAAAATCATTTATATATACAATATATAAACATAAAACAATAAC-ATATCAATAATTGTAT
* * * *
24510050 TAATAAAAATTGAATCAAATTAAAATT-C-TATATATAAAAT-TACACAATCAAAATTCAAGTAT
65 T-ATAAAAATTGAATCAAATCAAAATTGCGTATATA-AAAATATAAAAAATCAAAATTCAAATAT
24510112 A
128 A
* * *
24510113 ATAAATAAAATCATTTTTTATATATAATATATAAACATAAAATAATAACATATCAATAATTGTAT
1 ATAAATAAAATCA-TTTATATATACAATATATAAACATAAAACAATAACATATCAATAATTGTAT
* * * * *
24510178 TTTTAAAATTGAATCAAATCCAAATTGCGTATATAAAATTATAAAAAATCAAAATTTAAATATA
65 TATAAAAATTGAATCAAATCAAAATTGCGTATATAAAAATATAAAAAATCAAAATTCAAATATA
* ** *
24510242 ATAAACATAAAT-A-TT-CGTATGCAATATATAAACATAAAA
1 ATAAATA-AAATCATTTATATATACAATATATAAACATAAAA
24510281 TAAATATTTT
Statistics
Matches: 142, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
126 20 0.14
127 34 0.24
128 51 0.36
129 33 0.23
130 4 0.03
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (128 bp):
ATAAATAAAATCATTTATATATACAATATATAAACATAAAACAATAACATATCAATAATTGTATT
ATAAAAATTGAATCAAATCAAAATTGCGTATATAAAAATATAAAAAATCAAAATTCAAATATA
Found at i:24511009 original size:30 final size:30
Alignment explanation
Indices: 24510973--24511031 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
24510963 ATCATGAGTA
24510973 GTTTCTGGGTTTTAAAGATAGACTTATACC
1 GTTTCTGGGTTTTAAAGATAGACTTATACC
*
24511003 GTTTCTGGGTTTTAAAGATAGATTTATAC
1 GTTTCTGGGTTTTAAAGATAGACTTATAC
24511032 TGATCTCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.42
Consensus pattern (30 bp):
GTTTCTGGGTTTTAAAGATAGACTTATACC
Found at i:24512656 original size:41 final size:41
Alignment explanation
Indices: 24512610--24512697 Score: 176
Period size: 41 Copynumber: 2.1 Consensus size: 41
24512600 AAACTGGTAC
24512610 GAGAAAAACATACAAGTTCCCATTTCTTCAAAACTAATCTA
1 GAGAAAAACATACAAGTTCCCATTTCTTCAAAACTAATCTA
24512651 GAGAAAAACATACAAGTTCCCATTTCTTCAAAACTAATCTA
1 GAGAAAAACATACAAGTTCCCATTTCTTCAAAACTAATCTA
24512692 GAGAAA
1 GAGAAA
24512698 CAGCATACCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.25
Consensus pattern (41 bp):
GAGAAAAACATACAAGTTCCCATTTCTTCAAAACTAATCTA
Found at i:24514439 original size:112 final size:112
Alignment explanation
Indices: 24514242--24514470 Score: 449
Period size: 112 Copynumber: 2.0 Consensus size: 112
24514232 AAATGAGTTG
*
24514242 TTCTTGCCTACTATACCACCCGCTACCCAATCCCCAACGAAGTATTAAAAAGAAGACAGTAATTT
1 TTCTTGCCTACTATACCACCCGCTACCCAATCCCCAACGAAGTATTAAAAAGAAAACAGTAATTT
24514307 ATTTTTCTATTTGGTCACCAAAAGTCAAAGCATGTAATTTATTATTT
66 ATTTTTCTATTTGGTCACCAAAAGTCAAAGCATGTAATTTATTATTT
24514354 TTCTTGCCTACTATACCACCCGCTACCCAATCCCCAACGAAGTATTAAAAAGAAAACAGTAATTT
1 TTCTTGCCTACTATACCACCCGCTACCCAATCCCCAACGAAGTATTAAAAAGAAAACAGTAATTT
24514419 ATTTTTCTATTTGGTCACCAAAAGTCAAAGCATGTAATTTATTATTT
66 ATTTTTCTATTTGGTCACCAAAAGTCAAAGCATGTAATTTATTATTT
24514466 TTCTT
1 TTCTT
24514471 TTTGAACCTC
Statistics
Matches: 116, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
112 116 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (112 bp):
TTCTTGCCTACTATACCACCCGCTACCCAATCCCCAACGAAGTATTAAAAAGAAAACAGTAATTT
ATTTTTCTATTTGGTCACCAAAAGTCAAAGCATGTAATTTATTATTT
Found at i:24524285 original size:35 final size:35
Alignment explanation
Indices: 24524219--24524294 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
24524209 AATAAAATTT
*
24524219 AAATATTTTTAAATTATATTCATAATAAAATA-TCA
1 AAATATTTTCAAATTATATTCATAATAAAATAGT-A
* *
24524254 AAATATTTTACAAATTATATTTA-AATCAAATAGTA
1 AAATATTTT-CAAATTATATTCATAATAAAATAGTA
24524289 AAATAT
1 AAATAT
24524295 AAATTAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 24 0.67
36 12 0.33
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (35 bp):
AAATATTTTCAAATTATATTCATAATAAAATAGTA
Found at i:24539131 original size:3 final size:3
Alignment explanation
Indices: 24539125--24539195 Score: 92
Period size: 3 Copynumber: 24.0 Consensus size: 3
24539115 ATCTAAGATT
* **
24539125 TTA TTA TTA TTA TTAA TTA TTA GTA TGG TT- TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
24539169 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
24539196 AGTTAAAGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
2 4 0.07
3 53 0.88
4 3 0.05
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:24544256 original size:58 final size:56
Alignment explanation
Indices: 24544146--24544289 Score: 171
Period size: 58 Copynumber: 2.5 Consensus size: 56
24544136 TTATGATTTT
* * *
24544146 TTAATTTATATAATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATTAAG
1 TTAATTTA-ATAATAATTATATTAA-AATATGATTAAATTATATATTATTTTATTAAA
* * * *
24544204 TTATATTTAATAATAATTATGTTAAAATATGGTTAAATTTTTTATTATTTTTATTAAA
1 TTA-ATTTAATAATAATTATATTAAAATATGATTAAATTATATATTA-TTTTATTAAA
*
24544262 TTAATTTTAATAATAATTTTATTAAAAT
1 TTAA-TTTAATAATAATTATATTAAAAT
24544290 TTAATAACAA
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
57 18 0.24
58 51 0.69
59 5 0.07
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.54
Consensus pattern (56 bp):
TTAATTTAATAATAATTATATTAAAATATGATTAAATTATATATTATTTTATTAAA
Found at i:24544566 original size:11 final size:10
Alignment explanation
Indices: 24544550--24544595 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 10
24544540 CCACATTACT
24544550 AATATTTCATA
1 AATATTT-ATA
24544561 AATATTTATAAA
1 AATATTTAT--A
24544573 AATATTTCATA
1 AATATTT-ATA
24544584 AATATTTATA
1 AATATTTATA
24544594 AA
1 AA
24544596 AATATTTCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.22
11 15 0.47
12 8 0.25
13 2 0.06
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (10 bp):
AATATTTATA
Found at i:24544576 original size:23 final size:23
Alignment explanation
Indices: 24544550--24544603 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
24544540 CCACATTACT
24544550 AATATTTCATAAATATTTATAAA
1 AATATTTCATAAATATTTATAAA
24544573 AATATTTCATAAATATTTATAAA
1 AATATTTCATAAATATTTATAAA
24544596 AATATTTC
1 AATATTTC
24544604 TAACTCGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (23 bp):
AATATTTCATAAATATTTATAAA
Found at i:24544577 original size:12 final size:12
Alignment explanation
Indices: 24544560--24544602 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
24544550 AATATTTCAT
24544560 AAATATTTATAA
1 AAATATTTATAA
24544572 AAATATTTCAT--
1 AAATATTT-ATAA
24544583 AAATATTTATAA
1 AAATATTTATAA
24544595 AAATATTT
1 AAATATTT
24544603 CTAACTCGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 2 0.07
11 8 0.29
12 16 0.57
13 2 0.07
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (12 bp):
AAATATTTATAA
Found at i:24561992 original size:14 final size:14
Alignment explanation
Indices: 24561973--24562000 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24561963 TGGTGTTTGA
24561973 GGTGAAAATACTAT
1 GGTGAAAATACTAT
24561987 GGTGAAAATACTAT
1 GGTGAAAATACTAT
24562001 CATAGTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (14 bp):
GGTGAAAATACTAT
Found at i:24562038 original size:6 final size:6
Alignment explanation
Indices: 24562027--24562051 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
24562017 ATAAAATAGA
24562027 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
24562052 TACTTATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:24565585 original size:18 final size:18
Alignment explanation
Indices: 24565562--24565604 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
24565552 GTTCAAGGAG
24565562 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
24565580 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
24565598 TAATTAA
1 TAATTAA
24565605 GAACTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:24567732 original size:20 final size:20
Alignment explanation
Indices: 24567707--24567746 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
24567697 GGAAGTGTGC
24567707 TACATTCAGAAACAAAATAT
1 TACATTCAGAAACAAAATAT
24567727 TACATTCAGAAACAAAATAT
1 TACATTCAGAAACAAAATAT
24567747 GTTAAACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.15, G:0.05, T:0.25
Consensus pattern (20 bp):
TACATTCAGAAACAAAATAT
Found at i:24569869 original size:16 final size:16
Alignment explanation
Indices: 24569848--24569883 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
24569838 TTAAAAGTAA
24569848 AATAAAATAATCAAGT
1 AATAAAATAATCAAGT
24569864 AATAAAATAATCAAGT
1 AATAAAATAATCAAGT
24569880 AATA
1 AATA
24569884 CAGTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (16 bp):
AATAAAATAATCAAGT
Found at i:24577337 original size:13 final size:13
Alignment explanation
Indices: 24577319--24577344 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24577309 AGACTTAGGG
24577319 CTTTTGAAAAGTT
1 CTTTTGAAAAGTT
24577332 CTTTTGAAAAGTT
1 CTTTTGAAAAGTT
24577345 TGGTTTAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
CTTTTGAAAAGTT
Found at i:24580068 original size:30 final size:27
Alignment explanation
Indices: 24580032--24580090 Score: 73
Period size: 30 Copynumber: 2.1 Consensus size: 27
24580022 CAAAAATATT
*
24580032 ATTTATTAAATTTTGAAGATTTTATTTGTC
1 ATTTATTAAATTTT-AA-ATTTT-TTTATC
*
24580062 ATTTATTATATTTTAAATTTTTTTATC
1 ATTTATTAAATTTTAAATTTTTTTATC
24580089 AT
1 AT
24580091 AATATATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 7 0.26
28 5 0.19
29 2 0.07
30 13 0.48
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (27 bp):
ATTTATTAAATTTTAAATTTTTTTATC
Found at i:24581625 original size:13 final size:13
Alignment explanation
Indices: 24581609--24581633 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24581599 TTTTAAAATG
24581609 AAATTTTTTATAT
1 AAATTTTTTATAT
24581622 AAATTTTTTATA
1 AAATTTTTTATA
24581634 ATTTATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
AAATTTTTTATAT
Found at i:24588060 original size:57 final size:57
Alignment explanation
Indices: 24587999--24588113 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
24587989 TGTTATAAAA
*
24587999 AGTATTATAATATGCTCATTTATTAAAAATTGCAGCAAAAAGATATGAACATAACTT
1 AGTATTATAATATACTCATTTATTAAAAATTGCAGCAAAAAGATATGAACATAACTT
*
24588056 AGTATTATAATATACTCATTTATTAAAAATTGTAGCAAAAAGATATGAACATAACTT
1 AGTATTATAATATACTCATTTATTAAAAATTGCAGCAAAAAGATATGAACATAACTT
24588113 A
1 A
24588114 TTTACGTGTC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.34
Consensus pattern (57 bp):
AGTATTATAATATACTCATTTATTAAAAATTGCAGCAAAAAGATATGAACATAACTT
Found at i:24601848 original size:25 final size:24
Alignment explanation
Indices: 24601821--24601908 Score: 68
Period size: 26 Copynumber: 3.4 Consensus size: 24
24601811 TTGTTATTAT
*
24601821 AAATTTATATATATTGTTTATTCTTA
1 AAATTT-TATATATTATTTATT-TTA
* *
24601847 AAACTTTTCTGAGATTATTTATTTTCA
1 AAA-TTTTAT-ATATTATTTATTTT-A
* *
24601874 AATTTTTATATATTTTTTATTTTA
1 AAATTTTATATATTATTTATTTTA
24601898 AACACTTTTAT
1 AA-A-TTTTAT
24601909 TTTTATATAT
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
24 3 0.06
25 12 0.24
26 18 0.37
27 16 0.33
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (24 bp):
AAATTTTATATATTATTTATTTTA
Found at i:24604786 original size:20 final size:20
Alignment explanation
Indices: 24604758--24604795 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
24604748 TTGAATAATC
24604758 ACCCATATTTCTTTCAAATG
1 ACCCATATTTCTTTCAAATG
*
24604778 ACCCCTATTTCTTTCAAA
1 ACCCATATTTCTTTCAAA
24604796 GGACTCGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.39
Consensus pattern (20 bp):
ACCCATATTTCTTTCAAATG
Found at i:24611386 original size:46 final size:46
Alignment explanation
Indices: 24611334--24611547 Score: 313
Period size: 46 Copynumber: 4.6 Consensus size: 46
24611324 TTCTGAAATG
24611334 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGA
24611380 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA-GA
** *
24611426 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-TAGA
** * *
24611473 AAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGACAGA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGA
* * *
24611519 AAATGAGTAAGACCATAGTTGCAAGATAC
1 AAATGTGTAAGACCATGGTTGAAAGATAC
24611548 TGTGGCATCA
Statistics
Matches: 154, Mismatches: 11, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
46 114 0.74
47 40 0.26
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGA
Found at i:24611554 original size:93 final size:92
Alignment explanation
Indices: 24611331--24611547 Score: 319
Period size: 93 Copynumber: 2.3 Consensus size: 92
24611321 GCTTTCTGAA
* **
24611331 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAGAGAAAATGAATAAGACCAT
* *
24611396 GGTTGAAAGATACCATGGCAACATGAT
66 GGTTGAAAGATACCATGACAACATGAC
* *
24611423 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGGAAATGAATAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-GAGAAAATGAATAAGACCA
24611488 TGGTTGAAAGATACCATGACAACATGAC
65 TGGTTGAAAGATACCATGACAACATGAC
* * *
24611516 A-GAAAATGAGTAAGACCATAGTTGCAAGATAC
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATAC
24611548 TGTGGCATCA
Statistics
Matches: 113, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
92 46 0.41
93 67 0.59
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (92 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAGAGAAAATGAATAAGACCAT
GGTTGAAAGATACCATGACAACATGAC
Found at i:24624175 original size:23 final size:21
Alignment explanation
Indices: 24624129--24624183 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
24624119 TAAAAAAAAT
24624129 TAATTACAA-TAATAATAATA
1 TAATTACAATTAATAATAATA
*
24624149 -AATTACAATTAATATATCCATA
1 TAATTACAATTAATA-AT-AATA
*
24624171 TAATTAAAATTAA
1 TAATTACAATTAA
24624184 AATTAATCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 8 0.28
20 5 0.17
21 2 0.07
22 3 0.10
23 11 0.38
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.36
Consensus pattern (21 bp):
TAATTACAATTAATAATAATA
Found at i:24627871 original size:23 final size:23
Alignment explanation
Indices: 24627841--24627886 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
24627831 GTGTTTCATG
24627841 TCTGCTGCCTGATTAAGTTACAT
1 TCTGCTGCCTGATTAAGTTACAT
24627864 TCTGCTGCCTGATTAAGTTACAT
1 TCTGCTGCCTGATTAAGTTACAT
24627887 ACTAGCTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (23 bp):
TCTGCTGCCTGATTAAGTTACAT
Found at i:24628165 original size:25 final size:26
Alignment explanation
Indices: 24628130--24628178 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
24628120 TCTCCAATTC
*
24628130 TTAAACTTGATTTTGA-AATAAAAAA
1 TTAAACATGATTTTGATAATAAAAAA
*
24628155 TTAAACATGATTTTTATAATAAAA
1 TTAAACATGATTTTGATAATAAAA
24628179 CTTATTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (26 bp):
TTAAACATGATTTTGATAATAAAAAA
Found at i:24628242 original size:45 final size:46
Alignment explanation
Indices: 24628193--24628283 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
24628183 TTCTTCACAG
*
24628193 AATTAAA-TTCCTACTATAAAATTTTTAAAAAATACAACCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
* * *
24628238 AATTAAATTTCCTACTTTGAAATTTTCAAAAAATACAATCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
24628284 GACATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 7 0.17
46 34 0.83
ACGTcount: A:0.48, C:0.15, G:0.01, T:0.35
Consensus pattern (46 bp):
AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
Found at i:24628555 original size:41 final size:38
Alignment explanation
Indices: 24628510--24628638 Score: 118
Period size: 40 Copynumber: 3.2 Consensus size: 38
24628500 AAATAGGCTT
24628510 TTAGCGGCG-TTTGGATAAAAAACGCCACTAAAAATCAAGCA
1 TTAGCGGCGCTTT--AT-AAAAACGCCACTAAAAAT-AAGCA
**
24628551 TTAGCGGCGCTTTTATAAAAACG-CAGCTAAAGGTAGAGCA
1 TTAGCGGCGC-TTTATAAAAACGCCA-CTAAAAATA-AGCA
* * *
24628591 TTAGCGGCGCTTTTTGGAAAACGCCGCTAAAAATAAGCA
1 TTAGCGGCGCTTTAT-AAAAACGCCACTAAAAATAAGCA
*
24628630 TTACCGGCG
1 TTAGCGGCG
24628639 TTTTCCAAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
39 19 0.26
40 40 0.54
41 12 0.16
43 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (38 bp):
TTAGCGGCGCTTTATAAAAACGCCACTAAAAATAAGCA
Found at i:24628591 original size:40 final size:39
Alignment explanation
Indices: 24628527--24628642 Score: 130
Period size: 40 Copynumber: 2.9 Consensus size: 39
24628517 CGTTTGGATA
24628527 AAAAACGCCA-CTAAAAATCAAGCATTAGCGGCGCTTTTAT-
1 AAAAACG-CAGCTAAAAAT-AAGCATTAGCGGCGCTTTT-TG
**
24628567 AAAAACGCAGCTAAAGGTAGAGCATTAGCGGCGCTTTTTG
1 AAAAACGCAGCTAAAAATA-AGCATTAGCGGCGCTTTTTG
* * *
24628607 GAAAACGCCGCTAAAAATAAGCATTACCGGCG-TTTT
1 AAAAACGCAGCTAAAAATAAGCATTAGCGGCGCTTTT
24628643 CCAAAAAGTG
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
38 4 0.06
39 16 0.24
40 46 0.70
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (39 bp):
AAAAACGCAGCTAAAAATAAGCATTAGCGGCGCTTTTTG
Found at i:24628753 original size:41 final size:41
Alignment explanation
Indices: 24628696--24628898 Score: 316
Period size: 41 Copynumber: 5.0 Consensus size: 41
24628686 TTGAGTTTTG
* * *
24628696 GGGCCGTTAGCGGCGTTTTTGAATAAGCGCCACTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* * *
24628737 GGGCCTTTAGCGGCGTTTGTGAAGAAGTGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
24628778 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
24628819 GGGCCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTT
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
24628860 GGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
24628899 CCGCTTTTGA
Statistics
Matches: 149, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 149 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:24629555 original size:7 final size:7
Alignment explanation
Indices: 24629532--24629583 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
24629522 TAAATAAGAT
24629532 TTAGGGG
1 TTAGGGG
**
24629539 TTAGTAG
1 TTAGGGG
24629546 TTAGGGG
1 TTAGGGG
24629553 TTAGGGG
1 TTAGGGG
*
24629560 TTAGTGG
1 TTAGGGG
**
24629567 TTAAAGG
1 TTAGGGG
*
24629574 TTAGAGG
1 TTAGGGG
24629581 TTA
1 TTA
24629584 AGAGTTAGTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (7 bp):
TTAGGGG
Found at i:24629556 original size:21 final size:21
Alignment explanation
Indices: 24629532--24629591 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
24629522 TAAATAAGAT
*
24629532 TTAGGGGTTAGTAGTTAGGGG
1 TTAGGGGTTAGTAGTTAGAGG
* *
24629553 TTAGGGGTTAGTGGTTAAAGG
1 TTAGGGGTTAGTAGTTAGAGG
*
24629574 TTAGAGGTTAAG-AGTTAG
1 TTAGGGGTT-AGTAGTTAG
24629592 TGATTTAGGG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.25, C:0.00, G:0.42, T:0.33
Consensus pattern (21 bp):
TTAGGGGTTAGTAGTTAGAGG
Found at i:24629590 original size:14 final size:14
Alignment explanation
Indices: 24629526--24629591 Score: 55
Period size: 14 Copynumber: 4.7 Consensus size: 14
24629516 ATATATTAAA
*
24629526 TAAGATTTAGGGGT
1 TAAGAGTTAGGGGT
24629540 T-AGTAGTTAGGGGT
1 TAAG-AGTTAGGGGT
* * *
24629554 TAGGGGTTAGTGGT
1 TAAGAGTTAGGGGT
*
24629568 TAA-AGGTTAGAGGT
1 TAAGA-GTTAGGGGT
24629582 TAAGAGTTAG
1 TAAGAGTTAG
24629592 TGATTTAGGG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
13 2 0.05
14 37 0.90
15 2 0.05
ACGTcount: A:0.27, C:0.00, G:0.39, T:0.33
Consensus pattern (14 bp):
TAAGAGTTAGGGGT
Found at i:24633788 original size:43 final size:43
Alignment explanation
Indices: 24633728--24633818 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
24633718 CTTTGAGTTC
* * * *
24633728 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
*
24633770 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATATTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
24633813 ATTACC
1 ATTACC
24633819 TTGCATATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
Found at i:24634213 original size:42 final size:43
Alignment explanation
Indices: 24634090--24634294 Score: 254
Period size: 42 Copynumber: 4.8 Consensus size: 43
24634080 ACGATATTTT
* * *
24634090 TTTAGCGGCGTTTGTGGGAAAAAGCGCCGCTAAAGCTCAAT-ATC
1 TTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGGTC-TTGGTC
*
24634134 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
24634177 TTTAGCGACGTTTGTGGG-GAAGCGCTGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * * * *
24634219 TTTAGTGGCATTTGTGGG-GAAGCGCCGCTAAAGATCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
24634261 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAG
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
24634295 TTAGCGACGC
Statistics
Matches: 141, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
42 73 0.52
43 50 0.35
44 18 0.13
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:24634397 original size:22 final size:21
Alignment explanation
Indices: 24634365--24634409 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
24634355 TTAGTGGCGT
*
24634365 TAAAAAACGCCGCTAAAGGCC
1 TAAAAAACGCCGCTAAAAGCC
24634386 TAAAAAAGCGCCGCTAAAAGCC
1 TAAAAAA-CGCCGCTAAAAGCC
24634408 TA
1 TA
24634410 TTTTGGTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.44, C:0.27, G:0.18, T:0.11
Consensus pattern (21 bp):
TAAAAAACGCCGCTAAAAGCC
Found at i:24636333 original size:120 final size:120
Alignment explanation
Indices: 24636028--24637849 Score: 3414
Period size: 120 Copynumber: 15.2 Consensus size: 120
24636018 ACAGAAAAAT
24636028 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24636093 TAATATAAGAACATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
24636147 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24636212 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
24636267 ATATATTTTATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24636332 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
24636387 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24636452 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
24636507 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
24636572 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATT-AAATTATATAGTTTAATTAAA
24636627 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24636692 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
24636747 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24636812 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
* *
24636867 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCAGATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
24636932 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
24636987 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24637052 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
24637107 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
24637172 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
24637227 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24637292 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
24637347 ATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24637412 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
24637467 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24637532 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
24637587 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
24637652 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
24637707 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
24637772 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
24637827 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
24637850 TAAATATGAT
Statistics
Matches: 1678, Mismatches: 22, Indels: 5
0.98 0.01 0.00
Matches are distributed among these distances:
119 97 0.06
120 1579 0.94
121 2 0.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:24636866 original size:18 final size:17
Alignment explanation
Indices: 24636838--24636872 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24636828 ATTATTAAGA
*
24636838 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24636855 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24636873 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24637106 original size:18 final size:17
Alignment explanation
Indices: 24637078--24637112 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24637068 ATTATTAAGA
*
24637078 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24637095 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24637113 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24637586 original size:18 final size:17
Alignment explanation
Indices: 24637558--24637592 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24637548 ATTATTAAGA
*
24637558 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24637575 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24637593 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24637826 original size:18 final size:17
Alignment explanation
Indices: 24637798--24637832 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24637788 ATTATTAAGA
*
24637798 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24637815 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24637833 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24638046 original size:44 final size:45
Alignment explanation
Indices: 24637997--24638087 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
24637987 ACCTCTATTC
* * *
24637997 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
24638041 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
24638086 CA
1 CA
24638088 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:24638089 original size:16 final size:16
Alignment explanation
Indices: 24638068--24638136 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
24638058 GATTAGCTAT
24638068 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24638084 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
24638101 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
*
24638117 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
24638133 TACA
1 TACA
24638137 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 35 0.70
17 15 0.30
ACGTcount: A:0.35, C:0.38, G:0.03, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:24638114 original size:33 final size:32
Alignment explanation
Indices: 24638072--24638135 Score: 110
Period size: 33 Copynumber: 2.0 Consensus size: 32
24638062 AGCTATTACA
24638072 CCTCTAATCCAATACACCTCTAATCCCAATACG
1 CCTCTAATCCAATACACCTCTAAT-CCAATACG
*
24638105 CCTCTAATCCAATACGCCTCTAATCCAATAC
1 CCTCTAATCCAATACACCTCTAATCCAATAC
24638136 AGCGAACCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 7 0.23
33 23 0.77
ACGTcount: A:0.33, C:0.39, G:0.03, T:0.25
Consensus pattern (32 bp):
CCTCTAATCCAATACACCTCTAATCCAATACG
Found at i:24641228 original size:22 final size:21
Alignment explanation
Indices: 24641196--24641250 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
24641186 GTTGTATTTA
24641196 AATT-TATTTTAGTGTAAATC
1 AATTATATTTTAGTGTAAATC
* * *
24641216 TAATTATATTTTAATTTTTAATC
1 -AATTATATTTT-AGTGTAAATC
24641239 AATTATATTTTA
1 AATTATATTTTA
24641251 TATTAATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 5 0.17
22 17 0.59
23 7 0.24
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (21 bp):
AATTATATTTTAGTGTAAATC
Found at i:24641726 original size:20 final size:20
Alignment explanation
Indices: 24641701--24641751 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
24641691 GTACTCAGAA
*
24641701 AATTTTTCAGAAAACATTAC
1 AATTTTTCAAAAAACATTAC
*
24641721 AATTTTTCAAAAAATATTAC
1 AATTTTTCAAAAAACATTAC
24641741 AATTTTTCAAA
1 AATTTTTCAAA
24641752 GGTGCAGGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (20 bp):
AATTTTTCAAAAAACATTAC
Found at i:24643214 original size:24 final size:24
Alignment explanation
Indices: 24643158--24643324 Score: 60
Period size: 25 Copynumber: 6.8 Consensus size: 24
24643148 TCGAGCTGAG
24643158 TATCGGGAAGCTCATACA-AGCCATAA
1 TATCGGGAAGCTCA-A-AGAGCCA-AA
*
24643184 -A-CTGGAAGCTCAAGAGAGCCAAA
1 TATCGGGAAGCTCAA-AGAGCCAAA
* ** *
24643207 T-TCGGGAAACTCATGCGTGCC-AA
1 TATCGGGAAGCTCA-AAGAGCCAAA
* * *
24643230 TATGGGGAAGCTCTATAGAGCTATTAA
1 TATCGGGAAGCTC-AAAGAGCCA--AA
* *
24643257 T-T-AGGAAGCTCATAAGAGCCAAT
1 TATCGGGAAGCTCA-AAGAGCCAAA
* *
24643280 TATCGGGAAGCTCATAAGAGCCTAT
1 TATCGGGAAGCTCA-AAGAGCCAAA
* *
24643305 TATCGAGACGCTCATAAGAG
1 TATCGGGAAGCTCA-AAGAG
24643325 TTGTGGTGTG
Statistics
Matches: 108, Mismatches: 21, Indels: 25
0.70 0.14 0.16
Matches are distributed among these distances:
23 9 0.08
24 42 0.39
25 53 0.49
26 1 0.01
27 3 0.03
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (24 bp):
TATCGGGAAGCTCAAAGAGCCAAA
Found at i:24643274 original size:25 final size:26
Alignment explanation
Indices: 24643235--24643324 Score: 91
Period size: 25 Copynumber: 3.6 Consensus size: 26
24643225 GCCAATATGG
*
24643235 GGAAGCTC-TATAGAG-CTATTAATTA
1 GGAAGCTCATA-AGAGCCTATTAATCA
* *
24643260 GGAAGCTCATAAGAGCCAATT-ATCG
1 GGAAGCTCATAAGAGCCTATTAATCA
24643285 GGAAGCTCATAAGAGCCTATT-ATC-
1 GGAAGCTCATAAGAGCCTATTAATCA
*
24643309 GAGACGCTCATAAGAG
1 G-GAAGCTCATAAGAG
24643325 TTGTGGTGTG
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
24 1 0.02
25 50 0.88
26 6 0.11
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
GGAAGCTCATAAGAGCCTATTAATCA
Found at i:24647318 original size:14 final size:13
Alignment explanation
Indices: 24647295--24647324 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
24647285 TTTTTAAATG
24647295 TTTTAATTATTTA
1 TTTTAATTATTTA
24647308 TTTTAAATTATTTA
1 TTTT-AATTATTTA
24647322 TTT
1 TTT
24647325 ATGAAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTAATTATTTA
Found at i:24647661 original size:16 final size:18
Alignment explanation
Indices: 24647640--24647673 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
24647630 TAAAAATATA
24647640 AATTTAT-TTTTT-TTAT
1 AATTTATATTTTTATTAT
24647656 AATTTATATTTTTATTAT
1 AATTTATATTTTTATTAT
24647674 TTTAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 5 0.31
18 4 0.25
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
AATTTATATTTTTATTAT
Found at i:24653505 original size:41 final size:41
Alignment explanation
Indices: 24653452--24653543 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 41
24653442 TTAAAAATAT
24653452 TTATATTAAAAAATAATACCATAAATATAATAAATGTTTTA
1 TTATATTAAAAAATAATACCATAAATATAATAAATGTTTTA
* * * *
24653493 TTATATTAAAAAATAATACCGTAAATGTAGTTAATGTTTTA
1 TTATATTAAAAAATAATACCATAAATATAATAAATGTTTTA
*
24653534 TTGTATTAAA
1 TTATATTAAA
24653544 TATATTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.41
Consensus pattern (41 bp):
TTATATTAAAAAATAATACCATAAATATAATAAATGTTTTA
Found at i:24653713 original size:26 final size:26
Alignment explanation
Indices: 24653652--24653719 Score: 77
Period size: 29 Copynumber: 2.5 Consensus size: 26
24653642 GGATTTAATA
24653652 TAAATATAATATAAATAATTATTATT
1 TAAATATAATATAAATAATTATTATT
24653678 TAACCTATATAAT-TAATATAATTATT-TT
1 TAA---ATATAATATAA-ATAATTATTATT
24653706 TATAATATAATATA
1 TA-AATATAATATA
24653720 TTTGGGCCGG
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
26 10 0.28
27 2 0.06
28 7 0.19
29 17 0.47
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (26 bp):
TAAATATAATATAAATAATTATTATT
Found at i:24664929 original size:25 final size:25
Alignment explanation
Indices: 24664901--24664952 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
24664891 ATTATAAAAA
*
24664901 ATAATTTATCTA-TTATAAAAATGTT
1 ATAATATATCTATTTATAAAAAT-TT
*
24664926 ATAATATATTTATTTATAAAAATTT
1 ATAATATATCTATTTATAAAAATTT
24664951 AT
1 AT
24664953 GATCAAGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (25 bp):
ATAATATATCTATTTATAAAAATTT
Found at i:24674813 original size:11 final size:11
Alignment explanation
Indices: 24674799--24674834 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
24674789 GTCTTCTCAC
24674799 AATTCTCTCTA
1 AATTCTCTCTA
24674810 AATTCTCTCTA
1 AATTCTCTCTA
24674821 AATTCTCTC-A
1 AATTCTCTCTA
24674831 AATT
1 AATT
24674835 TATCTCAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 5 0.20
11 20 0.80
ACGTcount: A:0.31, C:0.25, G:0.00, T:0.44
Consensus pattern (11 bp):
AATTCTCTCTA
Found at i:24674840 original size:22 final size:22
Alignment explanation
Indices: 24674799--24674840 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
24674789 GTCTTCTCAC
*
24674799 AATTCTCTCTAAATTCTCTCTA
1 AATTCTCTCTAAATTATCTCTA
24674821 AATTCTCTC-AAATTTATCTC
1 AATTCTCTCTAAA-TTATCTC
24674841 AATTCTTGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (22 bp):
AATTCTCTCTAAATTATCTCTA
Found at i:24674844 original size:20 final size:22
Alignment explanation
Indices: 24674798--24674846 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
24674788 AGTCTTCTCA
*
24674798 CAATTCTCTCTAAATTCTCTCT
1 CAATTCTCTCTAAATTCTATCT
*
24674820 AAATTCTCTC-AAATT-TATCT
1 CAATTCTCTCTAAATTCTATCT
24674840 CAATTCT
1 CAATTCT
24674847 TGTCAAAGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 10 0.42
21 5 0.21
22 9 0.38
ACGTcount: A:0.29, C:0.27, G:0.00, T:0.45
Consensus pattern (22 bp):
CAATTCTCTCTAAATTCTATCT
Found at i:24676023 original size:7 final size:7
Alignment explanation
Indices: 24676003--24676038 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
24675993 CATAATAAAA
24676003 TAGTCATT
1 TAGT-ATT
*
24676011 TCGTATT
1 TAGTATT
24676018 TAGTATT
1 TAGTATT
24676025 TAGTATT
1 TAGTATT
24676032 TAGTATT
1 TAGTATT
24676039 ACATATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 23 0.88
8 3 0.12
ACGTcount: A:0.25, C:0.06, G:0.14, T:0.56
Consensus pattern (7 bp):
TAGTATT
Found at i:24677492 original size:44 final size:45
Alignment explanation
Indices: 24677439--24677538 Score: 123
Period size: 44 Copynumber: 2.2 Consensus size: 45
24677429 CTTTGACATT
* **
24677439 GACTTACATGAATT-ATTCCTGTCTCCAATGCCATA-TATAATATG
1 GACTTACATG-ATTCAATCCTGTCTCCAAAACCATATTATAATATG
* *
24677483 GACTTACATGGTTCAATCCTGTCTCCAAAACCATATTTCTAATATG
1 GACTTACATGATTCAATCCTGTCTCCAAAACCATA-TTATAATATG
24677529 GACTTACATG
1 GACTTACATG
24677539 GCTCATTTCT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
43 2 0.04
44 28 0.58
46 18 0.38
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (45 bp):
GACTTACATGATTCAATCCTGTCTCCAAAACCATATTATAATATG
Found at i:24680370 original size:39 final size:39
Alignment explanation
Indices: 24680311--24680489 Score: 268
Period size: 39 Copynumber: 4.6 Consensus size: 39
24680301 ATCGTGATCT
** * *
24680311 GAAGCCCGAAATCTAGCTGAAGTACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
24680350 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
* * **
24680389 GAAGCCCGGAGGCTAATTGAAGCATGTAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
24680428 GGAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
24680467 GAAGCCCGGAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
24680490 TCATCAGAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.36, C:0.22, G:0.28, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:24683059 original size:5 final size:6
Alignment explanation
Indices: 24683026--24683066 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
24683016 ATAATTTAAT
24683026 AAATAA AAATCAA AAACTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAAT-AA AAA-TAA AAATAA AAATAA AAATAA AAA
24683067 CATATAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 22 0.67
7 10 0.30
8 1 0.03
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:24686234 original size:17 final size:19
Alignment explanation
Indices: 24686184--24686246 Score: 59
Period size: 17 Copynumber: 3.7 Consensus size: 19
24686174 TAATATTAGT
* *
24686184 ATATAAATAGA-AATAAAA
1 ATATAAATAGATAGTAGAA
24686202 ATAT-AATA-A-A-TAGAA
1 ATATAAATAGATAGTAGAA
24686217 ATA-AAAT-GATAGTAGAA
1 ATATAAATAGATAGTAGAA
24686234 ATATAAATAGATA
1 ATATAAATAGATA
24686247 AATAAAAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
15 11 0.29
16 3 0.08
17 12 0.32
18 8 0.21
19 4 0.11
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (19 bp):
ATATAAATAGATAGTAGAA
Found at i:24686259 original size:15 final size:14
Alignment explanation
Indices: 24686232--24686314 Score: 64
Period size: 14 Copynumber: 5.8 Consensus size: 14
24686222 ATGATAGTAG
*
24686232 AAATATAAATAGAT
1 AAATAAAAATAGAT
24686246 AAATAAAAATTAGAT
1 AAATAAAAA-TAGAT
*
24686261 AAATAATAATAGTATT
1 AAATAAAAATAG-A-T
*
24686277 AGAATAATAA-A-AT
1 A-AATAAAAATAGAT
*
24686290 AAATATAAATAGA-
1 AAATAAAAATAGAT
24686303 AACATAAAAATA
1 AA-ATAAAAATA
24686315 ATAGTAATAA
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
12 6 0.11
13 5 0.09
14 21 0.37
15 14 0.25
16 3 0.05
17 8 0.14
ACGTcount: A:0.66, C:0.01, G:0.06, T:0.27
Consensus pattern (14 bp):
AAATAAAAATAGAT
Found at i:24686264 original size:29 final size:27
Alignment explanation
Indices: 24686232--24686317 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 27
24686222 ATGATAGTAG
24686232 AAATATAAATAGATAAATAAAAATTAGAT
1 AAATATAAATAGATAAATAAAAA-TA-AT
*
24686261 AAATA-ATAATAGTATTAGAATAATAA-AAT
1 AAATATA-AATAG-A-TA-AATAAAAATAAT
24686290 AAATATAAATAGA-AACATAAAAATAAT
1 AAATATAAATAGATAA-ATAAAAATAAT
24686317 A
1 A
24686318 GTAATAATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
25 1 0.02
26 7 0.15
27 4 0.08
28 2 0.04
29 22 0.46
30 3 0.06
31 2 0.04
32 7 0.15
ACGTcount: A:0.66, C:0.01, G:0.06, T:0.27
Consensus pattern (27 bp):
AAATATAAATAGATAAATAAAAATAAT
Found at i:24686323 original size:23 final size:23
Alignment explanation
Indices: 24686259--24686323 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 23
24686249 TAAAAATTAG
*
24686259 ATAAATAATAATAGTATTAGAATA
1 ATAAA-AATAATAGTAATAGAATA
24686283 AT-AAAATAAATA-TAAATAGAA-A
1 ATAAAAAT-AATAGT-AATAGAATA
24686305 CATAAAAATAATAGTAATA
1 -ATAAAAATAATAGTAATA
24686324 ATATATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
22 5 0.14
23 22 0.63
24 8 0.23
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.28
Consensus pattern (23 bp):
ATAAAAATAATAGTAATAGAATA
Found at i:24687341 original size:44 final size:44
Alignment explanation
Indices: 24687272--24687732 Score: 282
Period size: 44 Copynumber: 10.5 Consensus size: 44
24687262 TGGAACTTAA
* * * *
24687272 AGGG-GATAAAATCTGGTAATCTTCAGGTTGCTCCACTATTGCTT
1 AGGGAGATAAGATCT-GTAATTTTCAGCTTGCTCCACTACTGCTT
* *
24687316 AGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTACTACTT
1 AGGGAGATAAGATCTGTAATTTTCAGCTTGCTCCACTACTGCTT
* * * * * *
24687360 AAGGAGATCAG-GCT-CACCGTTTTCA-ATCTGCT-CAGCTACTGCTT
1 AGGGAGATAAGATCTGTA--ATTTTCAGCT-TGCTCCA-CTACTGCTT
24687404 AGGGAGATAAGATCTGTAATTTTCAGCTTGCTTCC-CTACTGCTT
1 AGGGAGATAAGATCTGTAATTTTCAGCTTGC-TCCACTACTGCTT
24687448 AGGGAGATAAGATCTGTAATTTTCAGCTTGCTTCC-CTACTGCTT
1 AGGGAGATAAGATCTGTAATTTTCAGCTTGC-TCCACTACTGCTT
* * * ** *
24687492 AGGGGGATAAGACTCATCGT--CTTT--GATCACTCCACTACTTCTT
1 AGGGAGATAAGA-TC-T-GTAATTTTCAGCTTGCTCCACTACTGCTT
* *
24687535 AGGGAGATAAGATCTGTAATTTTCAGCCTGTG-ACC-CTACTACTT
1 AGGGAGATAAGATCTGTAATTTTCAG-CT-TGCTCCACTACTGCTT
* * * * * *
24687579 AGGGGGTTAAG-GCT-CACTGTCTTC-GATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGTAAT-T-TTCAGCT-TGCTCCACTACTGCTT
* * *
24687623 AGGGAGATAAGATCTGTAATTTTCAGCCTGTTATC-CTACTGCTT
1 AGGGAGATAAGATCTGTAATTTTCAGCTTGCT-CCACTACTGCTT
* * * * * *
24687667 AGGGAGTTAAG-GCTCGCT-GTCTTC-GATCTGCTCCACTACTGTTT
1 AGGGAGATAAGATCT-G-TAATTTTCAGCT-TGCTCCACTACTGCTT
24687711 A-GG-GATAAGATCTGTAATTTTC
1 AGGGAGATAAGATCTGTAATTTTC
24687733 CAGCCTGTTA
Statistics
Matches: 319, Mismatches: 64, Indels: 70
0.70 0.14 0.15
Matches are distributed among these distances:
40 2 0.01
41 2 0.01
42 24 0.08
43 40 0.13
44 217 0.68
45 27 0.08
46 5 0.02
47 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (44 bp):
AGGGAGATAAGATCTGTAATTTTCAGCTTGCTCCACTACTGCTT
Found at i:24687632 original size:131 final size:131
Alignment explanation
Indices: 24687313--24687634 Score: 334
Period size: 131 Copynumber: 2.4 Consensus size: 131
24687303 TCCACTATTG
* * * * * *
24687313 CTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTACTACTTAAGGAGATCAGGCTCACC
1 CTTAGGGAGATAAGAGCTGCAATTTTCAG-CTGCTCCACTACTGCTTAGGGAGATAAGACTCACC
* * *
24687378 GTTTTCAATCTGCTCAGCTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCTTGCTTCCCTAC
65 GTTTTCAATCTACTCAGCTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTACCCTAC
*
24687443 TG
130 TA
* * * *
24687445 CTTAGGGAGATAAGATCTGTAATTTTCAGCTTGCTTCC-CTACTGCTTAGGGGGATAAGACTCAT
1 CTTAGGGAGATAAGAGCTGCAATTTTCAGC-TGC-TCCACTACTGCTTAGGGAGATAAGACTCAC
* *
24687509 CGTCTTT-GATC-ACTCCA-CTACTTCTTAGGGAGATAAGATCTGTAATTTTCAGCCTG-TGACC
64 CGT-TTTCAATCTACT-CAGCTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCT-ACC
24687570 CTACTA
126 CTACTA
* * * *
24687576 CTTAGGGGGTTAAG-GCT-CACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 CTTAGGGAGATAAGAGCTGCAAT-T-TTC-AGCTGCTCCACTACTGCTTAGGGAGATAAGA
24687635 TCTGTAATTT
Statistics
Matches: 162, Mismatches: 19, Indels: 19
0.81 0.09 0.09
Matches are distributed among these distances:
129 2 0.01
130 7 0.04
131 85 0.52
132 62 0.38
133 6 0.04
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (131 bp):
CTTAGGGAGATAAGAGCTGCAATTTTCAGCTGCTCCACTACTGCTTAGGGAGATAAGACTCACCG
TTTTCAATCTACTCAGCTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTACCCTACT
A
Found at i:24688041 original size:251 final size:254
Alignment explanation
Indices: 24687567--24688152 Score: 837
Period size: 251 Copynumber: 2.3 Consensus size: 254
24687557 TCAGCCTGTG
* ** *
24687567 ACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGG-GAT-
* *
24687632 AGATCTGTAATTTTCAGCCTGTTATCCTACTGCTTAGGGAGTTAAGGCTCGCTGTCTTCGATCTG
64 -GATCTGTATTTTTCAGCCTGTTATCCTACTGCTTAGGGAGTTAAGGCTCGCTGTCTTCGATCTA
*
24687697 CTCCACTACTGTTTAGGGATAAGATCTGTAATTTTCCAGCCTGTTACCCTACTACTTAGGGGGTT
128 CTCCACTACTGTTTAGGG--AAGATCTGTAATTTTCCAGCCTGTTACCCTACTACTTAGGGGGTC
* *
24687762 AAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGGAGATCTT-TATTTTCCAGAC-TAT
191 AAAGCTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGGAGAT-TTGTATTTTCCAG-CTTAT
24687825 T
254 T
* * *
24687826 ACTCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCTGCTCCACTACTATTTAGGGGATG-
1 ACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGGATGA
* *
24687890 TCTGTATTTTTCAGCCTGTTA-CCTTATTGCTTAAGGG-GTTAAGGCTTGCTGTCTTCGATCTAC
66 TCTGTATTTTTCAGCCTGTTATCC-TACTGCTT-AGGGAGTTAAGGCTCGCTGTCTTCGATCTAC
**
24687953 TCCACTACTGTTTAGGG-AGATCTGT-ATTTTCCAGCCTGTTACCCTACTGTTTAGGGGGTCAAA
129 TCCACTACTGTTTAGGGAAGATCTGTAATTTTCCAGCCTGTTACCCTACTACTTAGGGGGTCAAA
*
24688016 GCTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGGAGATTTGTATTTTTCAGCTTATT
194 GCTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGGAGATTTGTATTTTCCAGCTTATT
* * * * *
24688077 ACCCTACTGCTTAGGGGGTTAAGGCTTGTTGCCTTCGATCTGCTCCATTATTGTTTAGAGGA-GA
1 ACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGGATGA
24688141 TCTGTATTTTTC
66 TCTGTATTTTTC
24688153 TATCTGCTCC
Statistics
Matches: 297, Mismatches: 25, Indels: 18
0.87 0.07 0.05
Matches are distributed among these distances:
250 4 0.01
251 154 0.52
252 8 0.03
254 2 0.01
255 68 0.23
256 5 0.02
258 3 0.01
259 53 0.18
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (254 bp):
ACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGGATGA
TCTGTATTTTTCAGCCTGTTATCCTACTGCTTAGGGAGTTAAGGCTCGCTGTCTTCGATCTACTC
CACTACTGTTTAGGGAAGATCTGTAATTTTCCAGCCTGTTACCCTACTACTTAGGGGGTCAAAGC
TTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGGAGATTTGTATTTTCCAGCTTATT
Found at i:24688052 original size:167 final size:170
Alignment explanation
Indices: 24687457--24688150 Score: 829
Period size: 167 Copynumber: 4.1 Consensus size: 170
24687447 TAGGGAGATA
* * * *
24687457 AGATCTGTAATTTT-CAGCTTGCTT-CCCTACTGCTTAGGGGGATAAGAC-T-CATCGTCTTTGA
1 AGATCTGT-ATTTTCCAGCCTG-TTACCCTACTGCTTAGGGGGTTAAGGCTTGC-T-GTCTTCGA
* *
24687518 TC-ACTCCACTACT-TCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTGACCCTACTACTTAG
62 TCTACTCCACTACTGT-TTAGGG-GAT-AGATCTGTATTTTTCAGCCTGTTACCCTACTACTTAG
** *
24687581 GGGGTTAAGGCTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
124 GGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGG-G
* * *
24687629 ATAAGATCTGTAATTTT-CAGCCTGTTATCCTACTGCTTAGGGAGTTAAGGCTCGCTGTCTTCGA
1 ---AGATCTGT-ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGA
* *
24687693 TCTGCTCCACTACTGTTTA-GGGATAAGATCTGTAATTTTCCAGCCTGTTACCCTACTACTTAGG
62 TCTACTCCACTACTGTTTAGGGGAT-AGATCTGT-ATTTTTCAGCCTGTTACCCTACTACTTAGG
24687757 GGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGG
125 GGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGG
* * * * * *
24687803 AGATCTTTATTTTCCAGACTATTACTCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCTG
1 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTA
* * * * *
24687868 CTCCACTACTATTTAGGGGAT-G-TCTGTATTTTTCAGCCTGTTACCTTATTGCTTAAGGGGTTA
66 CTCCACTACTGTTTAGGGGATAGATCTGTATTTTTCAGCCTGTTACCCTACTACTTAGGGGGTTA
*
24687931 AGGCTTGCTGTCTTCGATCTACTCCACTACTGTTTA-GGG
131 AGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGG
* * *
24687970 AGATCTGTATTTTCCAGCCTGTTACCCTACTGTTTAGGGGGTCAAAGCTTGCTGTCTTCGATCTA
1 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTA
* * * *
24688035 CTCCACTACTGTTTAGGGG--AGATTTGTATTTTTCAGCTTATTACCCTACTGCTTAGGGGGTTA
66 CTCCACTACTGTTTAGGGGATAGATCTGTATTTTTCAGCCTGTTACCCTACTACTTAGGGGGTTA
* * * * *
24688098 AGGCTTGTTGCCTTCGATCTGCTCCATTATTGTTTAGAGG
131 AGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGG
24688138 AGATCTGTATTTT
1 AGATCTGTATTTT
24688151 TCTATCTGCT
Statistics
Matches: 457, Mismatches: 51, Indels: 29
0.85 0.09 0.05
Matches are distributed among these distances:
166 1 0.00
167 143 0.31
168 81 0.18
169 5 0.01
170 6 0.01
171 65 0.14
172 5 0.01
174 15 0.03
175 120 0.26
176 14 0.03
177 2 0.00
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (170 bp):
AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTA
CTCCACTACTGTTTAGGGGATAGATCTGTATTTTTCAGCCTGTTACCCTACTACTTAGGGGGTTA
AGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGG
Found at i:24688151 original size:84 final size:84
Alignment explanation
Indices: 24687457--24688152 Score: 812
Period size: 84 Copynumber: 8.2 Consensus size: 84
24687447 TAGGGAGATA
* * * * *
24687457 AGATCTGTAATTTTCAGCTTGCTT-CCCTACTGCTTAGGGGGATAAGAC-T-CATCGTCTTTGAT
1 AGATCTGTATTTTTCAGCCTG-TTACCCTACTGCTTAGGGGGTTAAGGCTTGC-T-GTCTTCGAT
*
24687519 C-ACTCCACTACT-TCTTAGGGAG
63 CTGCTCCACTACTGT-TTAGGG-G
* * * **
24687541 ATAAGATCTGTAATTTTCAGCCTGTGACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGAT
1 ---AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGAT
*
24687606 CTGCTCCACTACTGCTTAGGGAG
63 CTGCTCCACTACTGTTTAGGG-G
* * * *
24687629 ATAAGATCTGTAATTTTCAGCCTGTTATCCTACTGCTTAGGGAGTTAAGGCTCGCTGTCTTCGAT
1 ---AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGAT
*
24687694 CTGCTCCACTACTGTTTAGGGATA
63 CTGCTCCACTACTGTTTAGGG--G
* *
24687718 AGATCTGTAATTTTCCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCT
1 AGATCTGT-ATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCT
24687783 GCTCCACTACTGTTTAGGGG
65 GCTCCACTACTGTTTAGGGG
* * * * * *
24687803 AGATCTTTATTTTCCAGACTATTACTCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCTG
1 AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
*
24687868 CTCCACTACTATTTAGGGG
66 CTCCACTACTGTTTAGGGG
* * *
24687887 ATG-TCTGTATTTTTCAGCCTGTTACCTTATTGCTTAAGGGGTTAAGGCTTGCTGTCTTCGATCT
1 A-GATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCT
*
24687951 ACTCCACTACTGTTTA-GGG
65 GCTCCACTACTGTTTAGGGG
* * * * *
24687970 AGATCTGTATTTTCCAGCCTGTTACCCTACTGTTTAGGGGGTCAAAGCTTGCTGTCTTCGATCTA
1 AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
24688035 CTCCACTACTGTTTAGGGG
66 CTCCACTACTGTTTAGGGG
* * * * *
24688054 AGATTTGTATTTTTCAGCTTATTACCCTACTGCTTAGGGGGTTAAGGCTTGTTGCCTTCGATCTG
1 AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
* * *
24688119 CTCCATTATTGTTTAGAGG
66 CTCCACTACTGTTTAGGGG
24688138 AGATCTGTATTTTTC
1 AGATCTGTATTTTTC
24688153 TATCTGCTCC
Statistics
Matches: 536, Mismatches: 63, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
82 1 0.00
83 74 0.14
84 225 0.42
85 8 0.01
86 9 0.02
87 119 0.22
88 99 0.18
89 1 0.00
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (84 bp):
AGATCTGTATTTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTG
CTCCACTACTGTTTAGGGG
Found at i:24688376 original size:45 final size:45
Alignment explanation
Indices: 24688282--24688377 Score: 113
Period size: 45 Copynumber: 2.1 Consensus size: 45
24688272 CATTTTCGAT
* * * * **
24688282 CTGCTTCATAGCCGATACATGGAGATAAGATCTGTAATTCTTAGT
1 CTGCTCCATAGCCGATACATGAAGATAAGACCTGTAATTCTCAAC
*
24688327 CTGCTCCATAGCCGGTACATGAAGATAAGACCTGTAACTT-TCAAC
1 CTGCTCCATAGCCGATACATGAAGATAAGACCTGTAA-TTCTCAAC
24688372 CTGCTC
1 CTGCTC
24688378 TCTTGCTACT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 41 0.95
46 2 0.05
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (45 bp):
CTGCTCCATAGCCGATACATGAAGATAAGACCTGTAATTCTCAAC
Found at i:24688436 original size:89 final size:89
Alignment explanation
Indices: 24688172--24688892 Score: 432
Period size: 89 Copynumber: 8.1 Consensus size: 89
24688162 CATAGCCGAA
* *
24688172 ATAAGACCTGTAATTTTCAACCTGCTCTCTTGCTACCTT-AGAGAGATAAGGTTGGTGGCTAAAA
1 ATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTA-CTTCAGAGAGATAAGGCTGGTGGCTAAAA
* * * * * *
24688236 TTTGTTCTATAACTGATACATAGAG
65 TCTGCTCCATAGCCGATACATGGAG
* * * * * * * * **
24688261 ATAGGA-CTCGCCATTTTCGATCTGCT-TCATAGCCGA-TACATG-GAGATAAGATCT-GTAATT
1 ATAAGACCT-GCAATTTTCAACCTGCTCTC-TTG-CTACTTCA-GAGAGATAAG-GCTGGT--GG
* * * *
24688321 CT-TAGTCTGCTCCATAGCCGGTACATGAAG
59 CTAAAATCTGCTCCATAGCCGATACATGGAG
* *
24688351 ATAAGACCTGTAACTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
1 ATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
24688416 CTGCTCCATAGCCGATACATGGAG
66 CTGCTCCATAGCCGATACATGGAG
* * *
24688440 ATAAGACCTGCAATTTTTAACCTGCTCTGTTGCTAATTCAGAGAGATAAGGCTGGTGGCTAAAAT
1 ATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
24688505 CTGCTCCATAGCCGATACATGGAG
66 CTGCTCCATAGCCGATACATGGAG
** * * ** * * **
24688529 ATAAGA-CTCGTC-ATTTTTTATCTGTTC-CATAACTGA-TACATG-GAGATAAGATCT-GTAAT
1 ATAAGACCT-G-CAATTTTCAACCTGCTCTC-TTGCT-ACTTCA-GAGAGATAAG-GCTGGT-GG
* ** * *
24688588 TTTTAGTCTGTTTCCTTACTA-CC--T-CA-GGAAG
59 CTAAAATCTG-CTCC--A-TAGCCGATACATGG-AG
* * * * * * * *
24688619 ATAAGACTTG-TATCTTCAACATGCTCTCTTGCTCCCTCAGAGAGATAAGGCCGGTGGGTAAAAT
1 ATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
24688683 CTGCTCCATAGCCGATACATGGAG
66 CTGCTCCATAGCCGATACATGGAG
* * * * * * *
24688707 ATAAGA-CT-CACCATTTTCGATCTGCTC-CATAGACGA-TACATG-GAGATAAGATCT-GTAAT
1 ATAAGACCTGCA--ATTTTCAACCTGCTCTC-TTG-CTACTTCA-GAGAGATAAG-GCTGGT--G
* * * *
24688766 TCT-CAGTCTGCTCCATAGCTGATACATGGAG
58 GCTAAAATCTGCTCCATAGCCGATACATGGAG
24688797 ATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
1 ATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
* * *
24688862 CTGTTCCATAGTCGATACATAGAG
66 CTGCTCCATAGCCGATACATGGAG
24688886 ATAAGAC
1 ATAAGAC
24688893 TCACCATTTT
Statistics
Matches: 467, Mismatches: 112, Indels: 106
0.68 0.16 0.15
Matches are distributed among these distances:
84 2 0.00
85 3 0.01
87 5 0.01
88 30 0.06
89 266 0.57
90 139 0.30
91 15 0.03
92 2 0.00
93 3 0.01
94 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (89 bp):
ATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
CTGCTCCATAGCCGATACATGGAG
Found at i:24688441 original size:44 final size:44
Alignment explanation
Indices: 24688393--24688533 Score: 122
Period size: 44 Copynumber: 3.2 Consensus size: 44
24688383 CTACTTCAGA
24688393 GAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
1 GAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
* ***** ** * ** * ** *
24688437 GAGATAAGACCTGCAATTTTTAACCTGCTCTGTTGCTAATTCA-G
1 GAGATAAG-GCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
24688481 AGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
1 -GAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
24688526 GAGATAAG
1 GAGATAAG
24688534 ACTCGTCATT
Statistics
Matches: 64, Mismatches: 30, Indels: 6
0.64 0.30 0.06
Matches are distributed among these distances:
44 36 0.56
45 28 0.44
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (44 bp):
GAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
Found at i:24688487 original size:134 final size:133
Alignment explanation
Indices: 24688280--24688713 Score: 324
Period size: 134 Copynumber: 3.2 Consensus size: 133
24688270 GCCATTTTCG
* * * * * *** *
24688280 ATCTGCTTCATAGCCGATACATGGAGATAAGATCTGTAATTCTTAGTCTGCTCCATAGCCGGTAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGTAATTTTTAGTCTGCTCTATTGCTAATTC
24688345 ATGA-AGATAAGACCTGTAACTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGG
66 A-GAGAGATAAGACCTGTAAC-TTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGG
24688409 CTAAA
129 CTAAA
* ** *
24688414 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTTAACCTGCTCTGTTGCTAATTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGTAATTTTTAGTCTGCTCTATTGCTAATTC
* ** ** * * * * * *
24688479 AGAGAGATAAG-GCTGGTGGCTAAAATCTGCTC-CATAGCCGA-TACATG-GAGATAAGACTCGT
66 AGAGAGATAAGACCT-GTAACTTCAACCTGCTCTC-TTG-CTACTTCA-GAGAGATAAGGCTGGT
*** ***
24688540 CATTTTTT
127 -GGCTAAA
* * * * * * * **
24688548 ATCTGTTCCATAACTGATACATGGAGATAAGATCTGTAATTTTTAGTCTG-TTTCCTTACTACCT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGTAATTTTTAGTCTGCTCT-ATTGCTAATT
* * * * * *
24688612 CAG-GAAGATAAGACTTGTATCTTCAACATGCTCTCTTGCTCCCTCAGAGAGATAAGGCCGGTGG
65 CAGAG-AGATAAGACCTGTAACTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGG
*
24688676 GTAAA
129 CTAAA
24688681 ATCTGCTCCATAGCCGATACATGGAGATAAGAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAC
24688714 TCACCATTTT
Statistics
Matches: 220, Mismatches: 68, Indels: 25
0.70 0.22 0.08
Matches are distributed among these distances:
132 1 0.00
133 65 0.30
134 152 0.69
135 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (133 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGTAATTTTTAGTCTGCTCTATTGCTAATTC
AGAGAGATAAGACCTGTAACTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCT
AAA
Found at i:24688590 original size:45 final size:44
Alignment explanation
Indices: 24688503--24688599 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 44
24688493 GGTGGCTAAA
* * *
24688503 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGTCATTTTTT
1 ATCTGTTCCATAACCGATACATGGAGATAAGACTCGT-AATTTTT
*
24688548 ATCTGTTCCATAACTGATACATGGAGATAAGA-TCTGTAATTTTT
1 ATCTGTTCCATAACCGATACATGGAGATAAGACTC-GTAATTTTT
24688592 AGTCTGTT
1 A-TCTGTT
24688600 TCCTTACTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 9 0.20
45 37 0.80
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (44 bp):
ATCTGTTCCATAACCGATACATGGAGATAAGACTCGTAATTTTT
Found at i:24688661 original size:178 final size:178
Alignment explanation
Indices: 24688462--24689163 Score: 957
Period size: 178 Copynumber: 3.9 Consensus size: 178
24688452 ATTTTTAACC
* ** * *
24688462 TGCTCTGTTGCTAATTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGG
1 TGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCGATACATAG
** ** * * *
24688527 AGATAAGACTCGTCATTTTTTATCTGTTCCATAACTGATACATGGAGATAAGATCTGTAATTTTT
66 AGATAAGACTCACCATTTTCGATCTGCTCCATAACCGATACATGGAGATAAGATCTGTAATTTTC
*
24688592 AGTCTGTTTCCTTACTACCTCAGGAAGATAAGACTTGTATCTTCAACA
131 AGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTTGTATCTTCAACA
* * *
24688640 TGCTCTCTTGCTCCCTCAGAGAGATAAGGCCGGTGGGTAAAATCTGCTCCATAGCCGATACATGG
1 TGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCGATACATAG
*
24688705 AGATAAGACTCACCATTTTCGATCTGCTCCATAGA-CGATACATGGAGATAAGATCTGTAATTCT
66 AGATAAGACTCACCATTTTCGATCTGCTCCATA-ACCGATACATGGAGATAAGATCTGTAATTTT
* * * * *
24688769 CAGTCTGC-TCCATAGCTGA--TACATGG-AGATAAGACCTGCAATTTTCAACC
130 CAGTCTGCTTCCTTA-CT-ACCT-CA-GGAAGATAAGACTTG-TATCTTCAACA
* * * *
24688819 TGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGTTCCATAGTCGATACATAG
1 TGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCGATACATAG
* * * *
24688884 AGATAAGACTCACCATTTTTGATCTGCTCTATAGCCGATACATAGAGATAAGATCTGTAA-TTTC
66 AGATAAGACTCACCATTTTCGATCTGCTCCATAACCGATACATGGAGATAAGATCTGTAATTTTC
* * *
24688948 AGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTTAAAA
131 AGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTTGTATCTTCAACA
*
24688996 TGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCTGATACATAG
1 TGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCGATACATAG
* * * *
24689061 AGATAAGACTCACCATTTTCGATCTGTTCCATAGCCGATTCATGGAGATAAGATCTGTAATTTTT
66 AGATAAGACTCACCATTTTCGATCTGCTCCATAACCGATACATGGAGATAAGATCTGTAATTTTC
*
24689126 AGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGT
131 AGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTTGT
24689164 GAATTCACCG
Statistics
Matches: 461, Mismatches: 51, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
177 130 0.28
178 201 0.44
179 130 0.28
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (178 bp):
TGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCGATACATAG
AGATAAGACTCACCATTTTCGATCTGCTCCATAACCGATACATGGAGATAAGATCTGTAATTTTC
AGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTTGTATCTTCAACA
Found at i:24688822 original size:45 final size:43
Alignment explanation
Indices: 24688680--24688823 Score: 173
Period size: 45 Copynumber: 3.2 Consensus size: 43
24688670 CGGTGGGTAA
24688680 AATCTGCTCCATAGCCGATACATGGAGATAAGACT-CACCATTTTC
1 AATCTGCTCCATAG-CGATACATGGAGATAAGACTGCA--ATTTTC
* * *
24688725 GATCTGCTCCATAGACGATACATGGAGATAAGATCTGTAATTCTC
1 AATCTGCTCCATAG-CGATACATGGAGATAAGA-CTGCAATTTTC
*
24688770 AGTCTGCTCCATAGCTGATACATGGAGATAAGACCTGCAATTTTC
1 AATCTGCTCCATAGC-GATACATGGAGATAAGA-CTGCAATTTTC
*
24688815 AACCTGCTC
1 AATCTGCTC
24688824 TCTTGCTACT
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
44 1 0.01
45 81 0.95
46 2 0.02
47 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
AATCTGCTCCATAGCGATACATGGAGATAAGACTGCAATTTTC
Found at i:24688888 original size:223 final size:223
Alignment explanation
Indices: 24688213--24688890 Score: 627
Period size: 223 Copynumber: 3.0 Consensus size: 223
24688203 GCTACCTTAG
** * * * * *
24688213 AGAGATAAGGTTGGTGGCTAAAATTTGTTCTATAACTGATACATAGAGATAGGACTCGCCATTTT
1 AGAGATAAGGCCGGTGGCTAAAATCTGCTCTATAGCTGATACATGGAGATAAGACTCGCCATTTT
* * *
24688278 CGATCTGCTTCATAGCCGATACATGGAGATAAGATCTGTAATTCTTAGTCTGCTCCATAGCCGGT
66 CGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTTAGTCTGCTCCATAGCTGAT
* *
24688343 ACATGAAGATAAGACCTGTAACTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTG
131 ACATGGAGATAAGACCTGTAATTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTG
*
24688408 GCTAAAATCTGCTCCATAGCCGATACAT
196 GCTAAAATCTGCTCCATAGTCGATACAT
* * ***** ** * * * * * * *****
24688436 GGAGATAAGACCTGCAATTTTTAACCTGCTCTGTTGCTAATTCA-GAGAGATAAGGCT-GGTGGC
1 AGAGATAAGGCC-GGTGGCTAAAATCTGCTCTATAGCTGATACATG-GAGATAAGACTCGCCATT
*** * * * *
24688499 TAAAATCTGCTCCATAGCCGATACATGGAGATAAGA-CTCGTCATTTTTTA-TCTGTTCCATAAC
64 TTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCT-GT-AATTCTTAGTCTGCTCCATAGC
* * ** * * * *
24688562 TGATACATGGAGATAAGATCTGTAATTTTTAGTCTG-TTTCCTTACTACCTCAG-GAAGATAAGA
127 TGATACATGGAGATAAGACCTGTAATTTTCAACCTGCTCT-CTTGCTACTTCAGAG-AGATAAGG
* ** ** * ** *
24688625 CTTGTATCTTCAA-CATGCTCTC-TTGCTCCCT-CAG
190 CTGGTGGCTAAAATC-TGCTC-CATAG-TCGATACAT
* * * *
24688659 AGAGATAAGGCCGGTGGGTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTT
1 AGAGATAAGGCCGGTGGCTAAAATCTGCTCTATAGCTGATACATGGAGATAAGACTCGCCATTTT
* *
24688724 CGATCTGCTCCATAGACGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTCCATAGCTGAT
66 CGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTTAGTCTGCTCCATAGCTGAT
*
24688789 ACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTG
131 ACATGGAGATAAGACCTGTAATTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTG
*
24688854 GCTAAAATCTGTTCCATAGTCGATACAT
196 GCTAAAATCTGCTCCATAGTCGATACAT
24688882 AGAGATAAG
1 AGAGATAAG
24688891 ACTCACCATT
Statistics
Matches: 329, Mismatches: 108, Indels: 36
0.70 0.23 0.08
Matches are distributed among these distances:
222 42 0.13
223 247 0.75
224 40 0.12
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (223 bp):
AGAGATAAGGCCGGTGGCTAAAATCTGCTCTATAGCTGATACATGGAGATAAGACTCGCCATTTT
CGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTTAGTCTGCTCCATAGCTGAT
ACATGGAGATAAGACCTGTAATTTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTG
GCTAAAATCTGCTCCATAGTCGATACAT
Found at i:24688902 original size:89 final size:88
Alignment explanation
Indices: 24688326--24689080 Score: 397
Period size: 89 Copynumber: 8.5 Consensus size: 88
24688316 TAATTCTTAG
* * * *
24688326 TCTGCTCCATAGCCGGTACATGAAGATAAGACCTGTA-ACTTTCAACCTGCTCTCTTGCTACTTC
1 TCTGCTCCATAGCCGATACATGGAGATAAGA-CT-CACATTTTCAACCTGCTCTCTTGCTACTTC
24688390 AGAGAGATAAGGCTGGTGGCTAAAA
64 AGAGAGATAAGGCTGGTGGCTAAAA
* * *
24688415 TCTGCTCCATAGCCGATACATGGAGATAAGACCTGCA-ATTTTTAACCTGCTCTGTTGCTAATTC
1 TCTGCTCCATAGCCGATACATGGAGATAAGA-CT-CACATTTTCAACCTGCTCTCTTGCTACTTC
24688479 AGAGAGATAAGGCTGGTGGCTAAAA
64 AGAGAGATAAGGCTGGTGGCTAAAA
* ** * * ** *
24688504 TCTGCTCCATAGCCGATACATGGAGATAAGACTCGTCATTTTTTATCTGTTC-CATAACTGA-TA
1 TCTGCTCCATAGCCGATACATGGAGATAAGACTC-ACATTTTCAACCTGCTCTC-TTGCT-ACTT
* *** ** *
24688567 CATG-GAGATAAGATCT-GTAATTTTTAG
63 CA-GAGAGATAAG-GCTGGT-GGCTAAAA
* *** * * *
24688594 TCTGTTTCCTTACTA-CC--T-CA-GGAAGATAAGACTTGTATCTTCAACATGCTCTCTTGCTCC
1 TCTG-CTCC--A-TAGCCGATACATGG-AGATAAGACTCACATTTTCAACCTGCTCTCTTGCTAC
* * *
24688654 CTCAGAGAGATAAGGCCGGTGGGTAAAA
61 TTCAGAGAGATAAGGCTGGTGGCTAAAA
* * * * *
24688682 TCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTCGATCTGCTC-CATAGACGA-TA
1 TCTGCTCCATAGCCGATACATGGAGATAAGACTCA-CATTTTCAACCTGCTCTC-TTG-CTACTT
* ** * *
24688745 CATG-GAGATAAGATCT-GTAATTCT-CAG
63 CA-GAGAGATAAG-GCTGGT--GGCTAAAA
*
24688772 TCTGCTCCATAGCTGATACATGGAGATAAGACCTGCA-ATTTTCAACCTGCTCTCTTGCTACTTC
1 TCTGCTCCATAGCCGATACATGGAGATAAGA-CT-CACATTTTCAACCTGCTCTCTTGCTACTTC
24688836 AGAGAGATAAGGCTGGTGGCTAAAA
64 AGAGAGATAAGGCTGGTGGCTAAAA
* * * ** * * * * *
24688861 TCTGTTCCATAGTCGATACATAGAGATAAGACTCACCATTTTTGATCTGCTCTATAGCCGA-TAC
1 TCTGCTCCATAGCCGATACATGGAGATAAGACTCA-CATTTTCAACCTGCTCTCTTG-CTACTTC
* * *** ** *
24688925 ATAGAGATAAGATCT-GTAATTTCAG
64 AGAGAGATAAG-GCTGGTGGCTAAAA
* * *** **
24688950 TCTGCTTCC-TTG-C--TACCTCAGGAAGATAAGACTTGTATCTTT-AAAATGCTCTCTTGCTAC
1 TCTGC-TCCATAGCCGATACAT--GG-AGATAAGACTCACAT-TTTCAACCTGCTCTCTTGCTAC
* *
24689010 CTCAGAGAGATAAGGCCGGTGGCTAAAA
61 TTCAGAGAGATAAGGCTGGTGGCTAAAA
* *
24689038 TCTGCTCCATAGCTGATACATAGAGATAAGACTCACCATTTTC
1 TCTGCTCCATAGCCGATACATGGAGATAAGACTCA-CATTTTC
24689081 GATCTGTTCC
Statistics
Matches: 488, Mismatches: 126, Indels: 104
0.68 0.18 0.14
Matches are distributed among these distances:
84 2 0.00
85 3 0.01
86 4 0.01
87 13 0.03
88 75 0.15
89 280 0.57
90 92 0.19
91 12 0.02
92 2 0.00
93 3 0.01
94 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (88 bp):
TCTGCTCCATAGCCGATACATGGAGATAAGACTCACATTTTCAACCTGCTCTCTTGCTACTTCAG
AGAGATAAGGCTGGTGGCTAAAA
Found at i:24689159 original size:356 final size:357
Alignment explanation
Indices: 24688415--24689133 Score: 1170
Period size: 356 Copynumber: 2.0 Consensus size: 357
24688405 GTGGCTAAAA
* * *
24688415 TCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTTAACCTGCTCTGTTGCTAATTCA
1 TCTGCTCCATAGCTGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTAATTCA
* **
24688480 GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGTCATTT
66 GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCACCATTT
* * * * * *
24688545 TTTATCTGTTCCATAACTGATACATGGAGATAAGATCTGTAATTTTTAGTCTGTTTCCTTACTAC
131 TTGATCTGCTCCATAACCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTACTAC
* *
24688610 CTCAGGAAGATAAGACTTGTATCTTCAACATGCTCTCTTGCTCCCTCAGAGAGATAAGGCCGGTG
196 CTCAGGAAGATAAGACTTGTATCTTCAAAATGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTG
* *
24688675 GGTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTCGATCTGCTCCATAGA
261 GCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCACCATTTTCGATCTGCTCCATAGA
24688740 CGATACATGGAGATAAGATCTGTAATTCTCAG
326 CGATACATGGAGATAAGATCTGTAATTCTCAG
*
24688772 TCTGCTCCATAGCTGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTCA
1 TCTGCTCCATAGCTGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTAATTCA
* *
24688837 GAGAGATAAGGCTGGTGGCTAAAATCTGTTCCATAGTCGATACATAGAGATAAGACTCACCATTT
66 GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCACCATTT
* * *
24688902 TTGATCTGCTCTATAGCCGATACATAGAGATAAGATCTGTAA-TTTCAGTCTGCTTCCTTGCTAC
131 TTGATCTGCTCCATAACCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTACTAC
*
24688966 CTCAGGAAGATAAGACTTGTATCTTTAAAATGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTG
196 CTCAGGAAGATAAGACTTGTATCTTCAAAATGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTG
* * *
24689031 GCTAAAATCTGCTCCATAGCTGATACATAGAGATAAGACTCACCATTTTCGATCTGTTCCATAGC
261 GCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCACCATTTTCGATCTGCTCCATAGA
* * *
24689096 CGATTCATGGAGATAAGATCTGTAATTTTTAG
326 CGATACATGGAGATAAGATCTGTAATTCTCAG
24689128 TCTGCT
1 TCTGCT
24689134 TCCTTGCTAC
Statistics
Matches: 333, Mismatches: 29, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
356 176 0.53
357 157 0.47
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (357 bp):
TCTGCTCCATAGCTGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTAATTCA
GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCACCATTT
TTGATCTGCTCCATAACCGATACATAGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTACTAC
CTCAGGAAGATAAGACTTGTATCTTCAAAATGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTG
GCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCACCATTTTCGATCTGCTCCATAGA
CGATACATGGAGATAAGATCTGTAATTCTCAG
Done.