Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 72 of 318
Found at i:25025953 original size:22 final size:22
Alignment explanation
Indices: 25025886--25025946 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
25025876 ATAACATAAA
* **
25025886 AATATATTAATAAATATGTACAT
1 AATATATTGA-AAATAAATACAT
25025909 -ATATATTGAAAATAAATACAT
1 AATATATTGAAAATAAATACAT
25025930 AATATCATT-AAAATAAA
1 AATAT-ATTGAAAATAAA
25025947 ATAATAAGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 10 0.30
22 20 0.61
23 3 0.09
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.34
Consensus pattern (22 bp):
AATATATTGAAAATAAATACAT
Found at i:25026003 original size:16 final size:15
Alignment explanation
Indices: 25025984--25026033 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
25025974 AAGTATAATA
25025984 ATAAATATAATGATAT
1 ATAAATATAAT-ATAT
*
25026000 ATAAAAATAATACTAT
1 ATAAATATAATA-TAT
* *
25026016 ATATATAAAATATAT
1 ATAAATATAATATAT
25026031 ATA
1 ATA
25026034 TACACGTTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 7 0.24
16 22 0.76
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (15 bp):
ATAAATATAATATAT
Found at i:25026007 original size:18 final size:17
Alignment explanation
Indices: 25025966--25026035 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 17
25025956 GGCAATAGTG
25025966 AAAATAATAAGTATA-ATA
1 AAAAT-ATAA-TATATATA
25025984 ATAAATATAATGATATATA
1 A-AAATATAAT-ATATATA
*
25026003 AAAATAATACTATATATA
1 AAAAT-ATAATATATATA
25026021 TAAAATAT-ATATATA
1 -AAAATATAATATATA
25026036 CACGTTGTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
17 7 0.16
18 21 0.47
19 17 0.38
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (17 bp):
AAAATATAATATATATA
Found at i:25026008 original size:22 final size:21
Alignment explanation
Indices: 25025969--25026035 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
25025959 AATAGTGAAA
*
25025969 ATAATA-AGTATAATAATAAAT
1 ATAATATA-TATAAAAATAAAT
25025990 ATAATGATATATAAAAAT-AAT
1 ATAAT-ATATATAAAAATAAAT
*
25026011 ACT-ATATATATAAAATATATAT
1 A-TAATATATATAAAA-ATAAAT
25026033 ATA
1 ATA
25026036 CACGTTGTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
20 10 0.26
21 14 0.37
22 13 0.34
23 1 0.03
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (21 bp):
ATAATATATATAAAAATAAAT
Found at i:25026548 original size:22 final size:23
Alignment explanation
Indices: 25026523--25026568 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
25026513 CAACCAAATC
25026523 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
25026545 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
25026568 A
1 A
25026569 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:25026574 original size:23 final size:23
Alignment explanation
Indices: 25026530--25026574 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
25026520 ATCAATTCAA
*
25026530 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
25026553 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
25026575 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:25030134 original size:20 final size:21
Alignment explanation
Indices: 25030087--25030135 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
25030077 ATACACATAT
25030087 ATACAT-ATATTAAGAAATAC
1 ATACATAATATTAAGAAATAC
*
25030107 ATA-GTAATATTAA-AAATAC
1 ATACATAATATTAAGAAATAC
*
25030126 GTACATAATA
1 ATACATAATA
25030136 GATATACATA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.55, C:0.08, G:0.06, T:0.31
Consensus pattern (21 bp):
ATACATAATATTAAGAAATAC
Found at i:25030195 original size:27 final size:30
Alignment explanation
Indices: 25030139--25030196 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 30
25030129 CATAATAGAT
25030139 ATACATATAATATAGTTATTAAGAAAATAC
1 ATACATATAATATAGTTATTAAGAAAATAC
*
25030169 ATACA-AT-ATATAG-TATTAAGAATATAC
1 ATACATATAATATAGTTATTAAGAAAATAC
25030196 A
1 A
25030197 CAATGCATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 14 0.52
28 6 0.22
29 2 0.07
30 5 0.19
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (30 bp):
ATACATATAATATAGTTATTAAGAAAATAC
Found at i:25030776 original size:3 final size:3
Alignment explanation
Indices: 25030768--25030864 Score: 56
Period size: 3 Copynumber: 31.7 Consensus size: 3
25030758 TATTATATAC
* * *
25030768 AAT AAT AAT ACT AGA- AAT AAT AAT AACT AGT AAT AAT AAT ACATT AAA
1 AAT AAT AAT AAT A-AT AAT AAT AAT AA-T AAT AAT AAT AAT A-A-T AAT
** * * *
25030816 AAT AAT AAT -AT GTT AAT AACC AA- AAT ATT AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
25030860 AAT AA
1 AAT AA
25030865 GAGAACTAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
2 5 0.07
3 59 0.82
4 6 0.08
5 2 0.03
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:25030784 original size:136 final size:135
Alignment explanation
Indices: 25030399--25030788 Score: 377
Period size: 137 Copynumber: 2.8 Consensus size: 135
25030389 ATACATAAAC
* * * * *
25030399 ATAATA-AA-AAAA-TATTAAAATAAAGTAATTAGAAAATAATACTATGTACACAAATATAGACA
1 ATAATACAATAAAAGTATTAAAATAAAGTAATTA-AAAATAATACCATATA-A-ATATATACATA
* * * * * *
25030461 TATACATATAAAAAATATACACTATTATTA-ATAATAATAAATA-TAGTAATAAT-ATTATTAAC
63 CATACATA-ATAAAACATACACTAATATTATAT-ATAAT-AATACTAGAAATAATGATGA--AA-
* *
25030523 AAAAAAAAGCAAAT
122 TATAAAAAGCAAAT
* * *
25030537 ATAATATAATAAAAGTATTAAAATGAAGTAATTAAAAATAATACCATGTATAAATATATATATAC
1 ATAATACAATAAAAGTATTAAAATAAAGTAATTAAAAATAATACCA--TATAAATATATACATAC
*
25030602 ATATATAATAAAACATACACTAATATTATATATAATAATACTAGAAATAATGATGAAATATAAAA
64 ATACATAATAAAACATACACTAATATTATATATAATAATACTAGAAATAATGATGAAATATAAAA
*
25030667 AGTAAAT
129 AGCAAAT
* * *
25030674 ATAATACAATAGTAA-TATTAAAATAAAGTAATT-AAGATAATA-C-TATATATATATACATACA
1 ATAATACAATA-AAAGTATTAAAATAAAGTAATTAAAAATAATACCATATAAATATATACATACA
25030735 TACATATATAAAACATACACTAATATTATATACAATAATAATACTAGAAATAAT
65 TACATA-ATAAAACATACACTAATATTATAT---ATAATAATACTAGAAATAAT
25030789 AATAACTAGT
Statistics
Matches: 216, Mismatches: 23, Indels: 28
0.81 0.09 0.10
Matches are distributed among these distances:
132 21 0.10
133 24 0.11
135 1 0.00
136 28 0.13
137 38 0.18
138 14 0.06
139 34 0.16
140 34 0.16
141 19 0.09
142 3 0.01
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.31
Consensus pattern (135 bp):
ATAATACAATAAAAGTATTAAAATAAAGTAATTAAAAATAATACCATATAAATATATACATACAT
ACATAATAAAACATACACTAATATTATATATAATAATACTAGAAATAATGATGAAATATAAAAAG
CAAAT
Found at i:25030802 original size:16 final size:16
Alignment explanation
Indices: 25030768--25030825 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
25030758 TATTATATAC
25030768 AATAATAAT-ACTAGA
1 AATAATAATAACTAGA
*
25030783 AATAATAATAACTAGT
1 AATAATAATAACTAGA
* *
25030799 AATAATAATACATTAAA
1 AATAATAATA-ACTAGA
25030816 AATAATAATA
1 AATAATAATA
25030826 TGTTAATAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
15 9 0.24
16 15 0.41
17 13 0.35
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.29
Consensus pattern (16 bp):
AATAATAATAACTAGA
Found at i:25032266 original size:24 final size:24
Alignment explanation
Indices: 25032176--25032258 Score: 64
Period size: 24 Copynumber: 3.3 Consensus size: 24
25032166 CGTATAATGA
*
25032176 AATATATAC-TAATATTA-ATAAT
1 AATATATACATAATATGATATAAT
* *
25032198 AAATATAATAGAGGTAACATAGATATAAT
1 -AATAT-ATACA--TAATAT-GATATAAT
25032227 AATATATACATAATATGATATTAA-
1 AATATATACATAATATGATA-TAAT
25032251 AATATATA
1 AATATATA
25032259 TATGATATAG
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
23 5 0.10
24 15 0.31
25 8 0.17
27 9 0.19
28 6 0.12
29 5 0.10
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (24 bp):
AATATATACATAATATGATATAAT
Found at i:25032664 original size:23 final size:23
Alignment explanation
Indices: 25032638--25032699 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 23
25032628 ATTATTAATA
25032638 ATACTACAGAAATATATACACAT
1 ATACTACAGAAATATATACACAT
*
25032661 ATAC-ATTAG--ATATATACACAT
1 ATACTA-CAGAAATATATACACAT
*
25032682 ATA-TACATTAAATATATA
1 ATACTACA-GAAATATATA
25032700 TATACATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
20 1 0.03
21 16 0.52
22 1 0.03
23 13 0.42
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.32
Consensus pattern (23 bp):
ATACTACAGAAATATATACACAT
Found at i:25032708 original size:23 final size:23
Alignment explanation
Indices: 25032649--25032709 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
25032639 TACTACAGAA
*
25032649 ATATATACACATATACATTAGAT
1 ATATATACACATATACATTAAAT
* *
25032672 ATATACACATATATACATTAAAT
1 ATATATACACATATACATTAAAT
*
25032695 ATATATATACATATA
1 ATATATACACATATA
25032710 TAATAACATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (23 bp):
ATATATACACATATACATTAAAT
Found at i:25032722 original size:23 final size:23
Alignment explanation
Indices: 25032649--25032722 Score: 71
Period size: 23 Copynumber: 3.1 Consensus size: 23
25032639 TACTACAGAA
* *
25032649 ATATATACACATATACATTAGA-T
1 ATATATACATATATACA-TAAATT
*
25032672 ATATACACATATATACATTAAATAT
1 ATATATACATATATACA-TAAAT-T
25032697 ATATATACATATATA-ATAACATT
1 ATATATACATATATACATAA-ATT
25032720 ATA
1 ATA
25032723 CACTAATATT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
23 26 0.59
24 3 0.07
25 15 0.34
ACGTcount: A:0.51, C:0.11, G:0.01, T:0.36
Consensus pattern (23 bp):
ATATATACATATATACATAAATT
Found at i:25032722 original size:25 final size:25
Alignment explanation
Indices: 25032649--25032711 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
25032639 TACTACAGAA
*
25032649 ATATATACAC--ATATACATT--AG
1 ATATATACACATATATACATTAAAT
25032670 ATATATACACATATATACATTAAAT
1 ATATATACACATATATACATTAAAT
*
25032695 ATATATATACATATATA
1 ATATATACACATATATA
25032712 ATAACATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.28
23 9 0.25
25 17 0.47
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.37
Consensus pattern (25 bp):
ATATATACACATATATACATTAAAT
Found at i:25035083 original size:23 final size:23
Alignment explanation
Indices: 25035065--25035107 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
25035055 GTTTTTTTTA
25035065 TTTTTA-TTTTCAAAATTTTATT
1 TTTTTACTTTTCAAAATTTTATT
*
25035087 TTTTTACTTTTTAAAATTTTA
1 TTTTTACTTTTCAAAATTTTA
25035108 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTTACTTTTCAAAATTTTATT
Found at i:25036446 original size:24 final size:23
Alignment explanation
Indices: 25036409--25036462 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
25036399 AATACTATTT
25036409 TATTTTAACTCAAAATTTTTAATC
1 TATTTTAACTC-AAATTTTTAATC
* *
25036433 TATTTTGAAC-CAAATTTTTATTT
1 TATTTT-AACTCAAATTTTTAATC
25036456 TATTTTA
1 TATTTTA
25036463 TTCAAACTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 1 0.04
23 16 0.59
24 7 0.26
25 3 0.11
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (23 bp):
TATTTTAACTCAAATTTTTAATC
Found at i:25037569 original size:31 final size:32
Alignment explanation
Indices: 25037497--25037570 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 32
25037487 GATTTGGTGC
* *
25037497 AATTATACATGTGAAACTTGAATTATGAATTA
1 AATTATATATATGAAACTTGAATTATGAATTA
* * *
25037529 TA-TGTATATATGAAACTTGAATTTTG-ATTA
1 AATTATATATATGAAACTTGAATTATGAATTA
25037559 AATTATATATAT
1 AATTATATATAT
25037571 TTAAAAAATG
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
30 5 0.15
31 28 0.82
32 1 0.03
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.43
Consensus pattern (32 bp):
AATTATATATATGAAACTTGAATTATGAATTA
Found at i:25043964 original size:20 final size:20
Alignment explanation
Indices: 25043939--25043988 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
25043929 TGACTTAAAA
25043939 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
25043959 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
25043976 GTGGTAGTGGATT
1 TTGGTAGTGGATT
25043989 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:25048603 original size:20 final size:20
Alignment explanation
Indices: 25048578--25048627 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
25048568 TGACTTAAAA
25048578 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
25048598 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
25048615 GTGGTAGTGGATT
1 TTGGTAGTGGATT
25048628 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:25049209 original size:35 final size:35
Alignment explanation
Indices: 25049163--25049232 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
25049153 TCTTGCCAAC
25049163 TTTAATCAATAATCCCTTGATTTTTACTATAAATG
1 TTTAATCAATAATCCCTTGATTTTTACTATAAATG
25049198 TTTAATCAATAATCCCTTGATTTTTACTATAAATG
1 TTTAATCAATAATCCCTTGATTTTTACTATAAATG
25049233 ATGTTTTGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.06, T:0.46
Consensus pattern (35 bp):
TTTAATCAATAATCCCTTGATTTTTACTATAAATG
Found at i:25049870 original size:28 final size:27
Alignment explanation
Indices: 25049833--25049891 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
25049823 CCTAAATTAT
* * *
25049833 AAAATTAGAATCTCAAACACTAAACTC
1 AAAATTAGAAGCCCAAACACTAAAATC
*
25049860 AAAATTAAGAAGCCCAAACGCTAAAATC
1 AAAATT-AGAAGCCCAAACACTAAAATC
25049888 AAAA
1 AAAA
25049892 GCCAAAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 6 0.22
28 21 0.78
ACGTcount: A:0.56, C:0.20, G:0.07, T:0.17
Consensus pattern (27 bp):
AAAATTAGAAGCCCAAACACTAAAATC
Found at i:25053716 original size:7 final size:7
Alignment explanation
Indices: 25053704--25053740 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
25053694 AGTTTTTTTA
25053704 TTGAATT
1 TTGAATT
25053711 TTGAATT
1 TTGAATT
25053718 TTGAATT
1 TTGAATT
25053725 TTGAATT
1 TTGAATT
25053732 TTGAATT
1 TTGAATT
25053739 TT
1 TT
25053741 TTTAGTTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (7 bp):
TTGAATT
Found at i:25053749 original size:16 final size:16
Alignment explanation
Indices: 25053730--25053760 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25053720 GAATTTTGAA
*
25053730 TTTTGAATTTTTTTAG
1 TTTTGAATATTTTTAG
25053746 TTTTGAATATTTTTA
1 TTTTGAATATTTTTA
25053761 TAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.68
Consensus pattern (16 bp):
TTTTGAATATTTTTAG
Found at i:25053759 original size:18 final size:19
Alignment explanation
Indices: 25053730--25053773 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
25053720 GAATTTTGAA
25053730 TTTTGAAT-TTTTT-T-AG
1 TTTTGAATATTTTTATAAG
*
25053746 TTTTGAATATTTTTATAAT
1 TTTTGAATATTTTTATAAG
25053765 TTTTGAATA
1 TTTTGAATA
25053774 ATTTGTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 5 0.21
18 1 0.04
19 10 0.42
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (19 bp):
TTTTGAATATTTTTATAAG
Found at i:25069096 original size:21 final size:21
Alignment explanation
Indices: 25069070--25069110 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
25069060 AGACGAGCAA
* *
25069070 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
25069091 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
25069111 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:25072438 original size:24 final size:24
Alignment explanation
Indices: 25072411--25072458 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
25072401 AATTATCTCA
* *
25072411 TACTAAATATATAAA-ATGAAAGTT
1 TACTAAAAACATAAATAT-AAAGTT
25072435 TACTAAAAACATAAATATAAAGTT
1 TACTAAAAACATAAATATAAAGTT
25072459 GTGTTGGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (24 bp):
TACTAAAAACATAAATATAAAGTT
Found at i:25073126 original size:19 final size:20
Alignment explanation
Indices: 25073085--25073129 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
25073075 AAAACTATGA
*
25073085 TAAATTAAAGAAATAAATAT
1 TAAATTAAACAAATAAATAT
* *
25073105 TAAATT-AACAAATGAATTT
1 TAAATTAAACAAATAAATAT
25073124 TAAATT
1 TAAATT
25073130 TTTTATAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (20 bp):
TAAATTAAACAAATAAATAT
Found at i:25077630 original size:131 final size:132
Alignment explanation
Indices: 25077383--25077633 Score: 414
Period size: 131 Copynumber: 1.9 Consensus size: 132
25077373 GTATTCATCC
* *
25077383 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCACGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCACGGAATCGTGCCCTAACGTG
* *
25077448 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCGAAATTTCACTCGCGTCTT
66 TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCGCGTCTT
25077513 TT
131 TT
*
25077515 AAAA-TTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCACGGAATCGTGCCCTAACGTG
* * * *
25077579 TTAGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCA
66 TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCA
25077634 TTCATATCTT
Statistics
Matches: 110, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
131 106 0.96
132 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCACGGAATCGTGCCCTAACGTG
TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCGCGTCTT
TT
Found at i:25077649 original size:131 final size:132
Alignment explanation
Indices: 25077383--25077665 Score: 406
Period size: 131 Copynumber: 2.2 Consensus size: 132
25077373 GTATTCATCC
* * *
25077383 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCACGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCACGGAATCGTGCCCTAACGTG
* * * *
25077448 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCGAAATTTCACTCGCGTCTT
66 TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTT
25077513 -T
131 CT
* *
25077514 TAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCACGGAATCGTGCCCTAACGTG
* * * * * *
25077579 TTAGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCATTCATATCTT
66 TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTT
25077644 CT
131 CT
* *
25077646 AAAAATTATTTAAAACGAAG
1 AAAAATTCTTCAAAACGAAG
25077666 GCAATATTTG
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
131 115 0.86
132 18 0.14
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCACGGAATCGTGCCCTAACGTG
TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTT
CT
Found at i:25077702 original size:131 final size:131
Alignment explanation
Indices: 25077391--25077738 Score: 326
Period size: 131 Copynumber: 2.7 Consensus size: 131
25077381 CCAAAAGTTC
* ** * **
25077391 TTCAAAACGAAGACGAGATTCGATGTTTGGCAATTC-ACGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACGAAGACAAGATTCGACATTTAGCAATTCGA-AAAATCGTGCCCTAACGTGTTGGGTT
* * * * *
25077455 GCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCGAAATTTCACTCGCGTCTTTTAAAAT
65 GCAATTTCGTGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTTTAAAAAT
*
25077520 TC
130 TA
* * *** *
25077522 TTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTGTTAGGTTG
1 TTCAAAACGAAGACAAGATTCGACATTTAGCAATTCGAAAAATCGTGCCCTAACGTGTTGGGTTG
* * * * *
25077587 CAATTTCGTGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCATTCATATCTTCTAAAAAT
66 CAATTTCGTGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTT-TAAAAAT
25077652 TA
130 TA
* * * * * * * * *
25077654 TTTAAAACGAAGGCAATATTTGGCGTTT-GACAATTC-AAAAATCATGCCCTATCGTGCTGGGTT
1 TTCAAAACGAAGACAAGATTCGACATTTAG-CAATTCGAAAAATCGTGCCCTAACGTGTTGGGTT
**
25077717 GTGATTTC-TCGTTTGCTCAAAA
65 GCAATTTCGT-GTTTGCTCAAAA
25077739 CGATCGAACA
Statistics
Matches: 181, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
130 1 0.01
131 147 0.81
132 33 0.18
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (131 bp):
TTCAAAACGAAGACAAGATTCGACATTTAGCAATTCGAAAAATCGTGCCCTAACGTGTTGGGTTG
CAATTTCGTGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTTTAAAAATT
A
Found at i:25077881 original size:133 final size:130
Alignment explanation
Indices: 25077693--25078008 Score: 319
Period size: 130 Copynumber: 2.4 Consensus size: 130
25077683 ACAATTCAAA
* * * * * * ** *
25077693 AATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACGATCGAACATTCCTTTAT
1 AATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGAACATCCCTACAG
* * ** *
25077758 ATTTTCATTCATGTTTATAAAAAATTTACTT-AACAACGAAGACGATGTTCAATATTTGGTGATT
66 AATTTCACTCACATTT-TAAAAAA--TACTTCAA-AACGAAGACGATGTTCAATATTTGGCGATT
25077822 TGAG
127 TGAG
* * * * *
25077826 AATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGTTCGAAACAATTGAACATCCCTACAG
1 AATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGAACATCCCTACAG
** * * * *
25077891 AATTTCACTCACATTTTCTAAAATCCTTCAAAATGAAGGCGATGTTCAATGTTTGGCGATTTGAG
66 AATTTCACTCACATTTTAAAAAATACTTCAAAACGAAGACGATGTTCAATATTTGGCGATTTGAG
* * * * *
25077956 AATCAAGCCCCATCGTGCTGGGTTGTGCTTTTTCATTTGCCCAAAATAATCGA
1 AATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGA
25078009 TTATCTCCTC
Statistics
Matches: 147, Mismatches: 35, Indels: 5
0.79 0.19 0.03
Matches are distributed among these distances:
130 77 0.52
131 2 0.01
132 5 0.03
133 63 0.43
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (130 bp):
AATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGAACATCCCTACAG
AATTTCACTCACATTTTAAAAAATACTTCAAAACGAAGACGATGTTCAATATTTGGCGATTTGAG
Found at i:25089981 original size:263 final size:263
Alignment explanation
Indices: 25089513--25090288 Score: 1024
Period size: 263 Copynumber: 2.9 Consensus size: 263
25089503 CAGATCCTGC
* * * * *
25089513 TTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGACGAATCTTGACTTCCTGAAGTTACAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATTTTAACTTCCTGAAGTTGCAGTGAA
* * *
25089578 GCAAATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATTTTAGATCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTAGATCTC
* * *
25089643 GTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAAACGACGAATCTTGACTTCCTGAAGTTGCAGTG
131 GTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGCGAATCTAGACTTCCTGAAGTTGCAGTG
*
25089708 AAGCAGATTTATGTCACTAACCTAGCTCCCTAAAGTTGTAGTAGAGTAGGCT-A-AAATATAGAT
196 AAGCAGATTTA-G-CACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAGAAATATAGAT
*
25089771 CTCGT
259 ATCGT
* * * *
25089776 TTCCCTGAAGTTACAGTGGAACAGATCAAAGACGACGAATTTTAACTCCCGGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATTTTAACTTCCTGAAGTTGCAGTGAA
*
25089841 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTAGGTCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTAGATCTC
**
25089906 GTTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACGGCGAATCTAGACTTCCTGAAGTTGCAGTG
131 GTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGCGAATCTAGACTTCCTGAAGTTGCAGTG
* * * *
25089971 AGGTAGATTTAAGCCACTAACCTAGCTCTCTAAAGTTGTAGTGGAGTAAGCTAAGAAATATAGAT
196 AAGCAGATTT-AG-CACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAGAAATATAGAT
25090036 ATCGT
259 ATCGT
** * * *
25090041 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACG-GCTCTAGGCTTCCTGAAGTTGCAATGA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATTTTA-ACTTCCTGAAGTTGCAGTGA
* * * *
25090105 GGCAGATTTAAGCCACTAACCTAGCTCCCTAAAGTTGTAGAGGAGTAGGCTGAGAAA-TATAGAT
65 AGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT-A-AAATTTTAGAT
* * ** * * * * *
25090169 TTTGTTTCTTTG-AGATTGCAGTGGAACAGATCAAAGACGGTGAATCTAGGCTTCCTGATGTTAC
128 CTCGTTTCCCTGAAG-TTGCAGTGGAGCAGATCAAAGACGGCGAATCTAGACTTCCTGAAGTTGC
*
25090233 AGTGAAGCAGATTTAG-ACTATCGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
192 AGTGAAGCAGATTTAGCACTA---ACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
25090289 GACGATTGTA
Statistics
Matches: 448, Mismatches: 55, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
263 225 0.50
264 5 0.01
265 117 0.26
266 98 0.22
267 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (263 bp):
TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATTTTAACTTCCTGAAGTTGCAGTGAA
GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTAGATCTC
GTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGCGAATCTAGACTTCCTGAAGTTGCAGTG
AAGCAGATTTAGCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAGAAATATAGATAT
CGT
Found at i:25090106 original size:133 final size:132
Alignment explanation
Indices: 25089513--25090288 Score: 1010
Period size: 132 Copynumber: 5.9 Consensus size: 132
25089503 CAGATCCTGC
* * * *
25089513 TTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGACGAATCTTGACTTCCTGAAGTTACAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* * *
25089578 GCAAATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG-TTGAAATTTTAGATCT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAGAAA-TATAGATCT
25089642 CGT
130 CGT
* *
25089645 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAAACGACGAATCTTGACTTCCTGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* *
25089710 GCAGATTTATGTCACTAACCTAGCTCCCTAAAGTTGTAGTAGAGTAGGCTA-AAATATAGATCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAGAAATATAGATCTC
25089774 GT
131 GT
* * * * *
25089776 TTCCCTGAAGTTACAGTGGAACAGATCAAAGACGACGAATTTTA-ACTCCCGGAAGTTGCAGTGA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAA-TCTAGACTTCCTGAAGTTGCAGTGA
* *
25089840 AGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTA-AAATTTTAGGTC
65 AGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAGAAA-TATAGATC
25089904 TCGT
129 TCGT
** * *
25089908 TTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACGGCGAATCTAGACTTCCTGAAGTTGCAGTGAG
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* * * * *
25089973 GTAGATTTAAGCCACTAACCTAGCTCTCTAAAGTTGTAGTGGAGTAAGCTAAGAAATATAGATAT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT-AGAAATATAGATCT
25090038 CGT
130 CGT
** * * *
25090041 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGGCTCTAGGCTTCCTGAAGTTGCAATGAG
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* * *
25090106 GCAGATTTAAGCCACTAACCTAGCTCCCTAAAGTTGTAGAGGAGTAGGCTGAGAAATATAGATTT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT-AGAAATATAGATCT
*
25090171 TGT
130 CGT
** * ** * * *
25090174 TTCTTTG-AGATTGCAGTGGAACAGATCAAAGACGGTGAATCTAGGCTTCCTGATGTTACAGTGA
1 TTCCCTGAAG-TTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGA
*
25090238 AGCAGATTT-AG--ACTATCGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
65 AGCAGATTTAAGTCACTA---ACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
25090289 GACGATTGTA
Statistics
Matches: 571, Mismatches: 63, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
130 4 0.01
131 121 0.21
132 223 0.39
133 220 0.39
134 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (132 bp):
TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAGAAATATAGATCTC
GT
Found at i:25091253 original size:21 final size:20
Alignment explanation
Indices: 25091211--25091259 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
25091201 ATCAGCTTAC
* *
25091211 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGATTTACCTCGT
*
25091231 TTGAGCTCGAATTTACCTTGT
1 TTGAGCTCG-ATTTACCTCGT
*
25091252 TTCAGCTC
1 TTGAGCTC
25091260 ATTCCTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.43
Consensus pattern (20 bp):
TTGAGCTCGATTTACCTCGT
Found at i:25093704 original size:19 final size:20
Alignment explanation
Indices: 25093672--25093712 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
25093662 GAATGAAATC
25093672 GAGAGAAGAAACAAAGAAAA
1 GAGAGAAGAAACAAAGAAAA
25093692 GAGAGAA-AAACAAAGAAAA
1 GAGAGAAGAAACAAAGAAAA
25093711 GA
1 GA
25093713 AAATGAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.71, C:0.05, G:0.24, T:0.00
Consensus pattern (20 bp):
GAGAGAAGAAACAAAGAAAA
Found at i:25095846 original size:10 final size:10
Alignment explanation
Indices: 25095833--25095878 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
25095823 AGCTCACTTG
25095833 AGCTCGTTTT
1 AGCTCGTTTT
*
25095843 AGCTCGTTTG
1 AGCTCGTTTT
*
25095853 AGCTCGAATTT
1 AGCTCG-TTTT
*
25095864 AGCTCGTTTC
1 AGCTCGTTTT
25095874 AGCTC
1 AGCTC
25095879 ATTCCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:25095866 original size:21 final size:20
Alignment explanation
Indices: 25095830--25095878 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
25095820 ATCAGCTCAC
*
25095830 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGATTTAGCTCGT
25095850 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCG-ATTTAGCTCGT
*
25095871 TTCAGCTC
1 TTGAGCTC
25095879 ATTCCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGAGCTCGATTTAGCTCGT
Found at i:25096121 original size:13 final size:13
Alignment explanation
Indices: 25096103--25096127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25096093 AATAGTTGTG
25096103 TGTTATTTAATTA
1 TGTTATTTAATTA
25096116 TGTTATTTAATT
1 TGTTATTTAATT
25096128 TTGTAGGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:25099757 original size:131 final size:132
Alignment explanation
Indices: 25099510--25099760 Score: 423
Period size: 131 Copynumber: 1.9 Consensus size: 132
25099500 GTATTCATCC
* *
25099510 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGAAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGAAATCGTGCCCTAACGTG
* * *
25099575 TTGGGTTGTAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCGCGTCTT
25099640 TT
131 TT
*
25099642 AAAA-TTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGAAATCGTGCCCTAACGTG
* *
25099706 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCA
66 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCA
25099761 TTCATATCTT
Statistics
Matches: 111, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
131 107 0.96
132 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGAAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCGCGTCTT
TT
Found at i:25099823 original size:131 final size:130
Alignment explanation
Indices: 25099518--25099865 Score: 374
Period size: 131 Copynumber: 2.7 Consensus size: 130
25099508 CCAAAAGTTC
* * * * *
25099518 TTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGAAATCGTGCCCTAACGTGTTGGGTTG
1 TTCAAAACAAAGACAAGATTCGACGTTTGACAATTCGAG-AATCGTGCCCTAACGTGTTGGGTTG
* * * * *
25099583 TAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCGAAATTTCACTCGCGTCTTTTAAAATT
65 TAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTTTAAAAATT
*
25099648 C
130 A
* * ** *
25099649 TTCAAAACGAAGACGAGATTCGATATTT-AGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACAAAGACAAGATTCGACGTTTGA-CAATTCG-AGAATCGTGCCCTAACGTGTTGGGTT
* * * * *
25099713 GCAATTTCACGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCATTCATATCTTCTAAAAA
64 GTAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTT-TAAAAA
25099778 TTA
128 TTA
* * * * * * * *
25099781 TTTAAAACAAAGGCAATATTTGGCGTTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTGT
1 TTCAAAACAAAGACAAGATTCGACGTTTGACAATTCGAGAATCGTGCCCTAACGTGTTGGGTTGT
* *
25099846 GATTTCTCGTTTGCTCAAAA
66 AATTTCACGTTTGCTCAAAA
25099866 CGATCGAACA
Statistics
Matches: 183, Mismatches: 30, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
131 148 0.81
132 34 0.19
133 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (130 bp):
TTCAAAACAAAGACAAGATTCGACGTTTGACAATTCGAGAATCGTGCCCTAACGTGTTGGGTTGT
AATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACATCTTTAAAAATTA
Found at i:25100008 original size:133 final size:130
Alignment explanation
Indices: 25099817--25100136 Score: 336
Period size: 130 Copynumber: 2.4 Consensus size: 130
25099807 TTGACAATTC
* * * * * * * *
25099817 GAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACGATCGAACATTCATT
1 GAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATCGAACATCCATA
* * * * **
25099882 TATATTTTCATTCATGTTTATAAAAAATTTACTT-AACAACGAAGACGATGTTCAATGTTTGGCG
66 CAGAATTTCACTCACATTT-TAAAAAA--TACTTCAA-AACGAAGACGATGTTCAATGTTTGGCG
25099946 ATTT
127 ATTT
* * * * *
25099950 GAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGTTCGAAACAATTGAACATCCCTA
1 GAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATCGAACATCCATA
** * * * *
25100015 CAGAATTTCACTCACATTTTTTAAAATCCTTCAAAATGAAGGCGATGTTCGATGTTTGGCGATTT
66 CAGAATTTCACTCACATTTTAAAAAATACTTCAAAACGAAGACGATGTTCAATGTTTGGCGATTT
* * * *
25100080 GAGAATCAAGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGCCCAAAATAATCGAA
1 GAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATCGAA
25100137 TATCTCCTCG
Statistics
Matches: 153, Mismatches: 33, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
130 81 0.53
131 2 0.01
132 5 0.03
133 65 0.42
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (130 bp):
GAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATCGAACATCCATA
CAGAATTTCACTCACATTTTAAAAAATACTTCAAAACGAAGACGATGTTCAATGTTTGGCGATTT
Found at i:25106181 original size:22 final size:19
Alignment explanation
Indices: 25106155--25106204 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 19
25106145 CGCTATATGT
25106155 TGTACATATACTGATATACTTA
1 TGTACATATACTG-TATA--TA
*
25106177 TGTACATAT-GTGTATATA
1 TGTACATATACTGTATATA
25106195 TGTACATATA
1 TGTACATATA
25106205 ATAGAAAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 11 0.42
20 4 0.15
21 2 0.08
22 9 0.35
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (19 bp):
TGTACATATACTGTATATA
Found at i:25108120 original size:3 final size:3
Alignment explanation
Indices: 25108097--25108152 Score: 78
Period size: 3 Copynumber: 18.7 Consensus size: 3
25108087 ATTTTGTGGA
*
25108097 AAG AAG TAAA AAG AA- AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG -AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
25108142 AAG GAG AAG AA
1 AAG AAG AAG AA
25108153 AGGGGTTAGG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
2 2 0.04
3 43 0.91
4 2 0.04
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:25113954 original size:297 final size:301
Alignment explanation
Indices: 25113372--25113990 Score: 711
Period size: 303 Copynumber: 2.1 Consensus size: 301
25113362 CAAATCATTT
* * * *
25113372 AAGAGCTTAAATAATTGTAAGTATAGATATACAATTGATGAAAATAATAAAATGTATAATAAAAT
1 AAGAGCTTAAATAATAGTAAATATAAATATACAATTGACGAAAATAATAAAATGTATAATAAAAT
* * * * *
25113437 TAAAATTTACAAAAATATCAACTTGAAGCATTAGCGGAATGATAAAGTAAATGTTTTGCTAATGT
66 TAAAATGTACAAAAACATCAAATTGAAGCATTAGCGGAATGATAAAGTAAATGTTTTACTAATAT
* * * * *
25113502 AATTGATTGAATGTGGGTTTAAATCTCACTAGTTTCATATTTTTATTGATTTTTTAAAATAAAAG
131 AATTGATTGAAGGTGGATTCAAATCTCACCAGTTTCA-ATTTTTATTGAGTTTTTAAAATAAAAG
* *
25113567 AATTAAAATACCCTCGAATAATATAACTTATCTTTTATTACGAATAGGTATTTCTATATTTCTCA
195 AACTAAAATACCCTCGAATAATATAACTTA-CTTTTATTACGAATAGGCATTTCTATATTTCTCA
** *
25113632 TAACTGAGTTGGTACCTGGTTAACTCATGACACCAACTCAATC
259 TAACCAAGTTGGTACCTAGTTAACTCATGACACCAACTCAATC
* * ** * * *
25113675 AAGAGATTAAATAATAGTAAATATAAATATACAATTGACGGAGGTGATAAAGTGTGTAATAAAAT
1 AAGAGCTTAAATAATAGTAAATATAAATATACAATTGACGAAAATAATAAAATGTATAATAAAAT
* * * ** * * *
25113740 TAAAATGTATAAAAACGTCAAATT-AATGCTTTAGTTGAGTGGTAAATTAAAAT-TTTTACTAAT
66 TAAAATGTACAAAAACATCAAATTGAA-GCATTAGCGGAATGATAAAGT-AAATGTTTTACTAAT
*
25113803 ATAATTTATTG-AGGTGGATTCAAATCTCACCAGTTTC-ATTTTTATTG-GTTTTTAAAATAAAA
129 ATAATTGATTGAAGGTGGATTCAAATCTCACCAGTTTCAATTTTTATTGAGTTTTTAAAATAAAA
* * **
25113865 -AGACTAAAATACTCTTGAATAATATAACTTA-TTTTATTGTGAA-AGGGCATTTCTATAATTTC
194 GA-ACTAAAATACCCTCGAATAATATAACTTACTTTTATTACGAATA-GGCATTTCTAT-ATTTC
* *
25113927 -CATAACCAAGTTGGT-GCTCAGTTAACTCATGACACCAACTCAATT
256 TCATAACCAAGTTGGTACCT-AGTTAACTCATGACACCAACTCAATC
25113972 ATA-AGCTTAAATAATAGTA
1 A-AGAGCTTAAATAATAGTA
25113991 TAGATAAAAT
Statistics
Matches: 267, Mismatches: 42, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
296 3 0.01
297 73 0.27
298 7 0.03
299 40 0.15
300 10 0.04
302 24 0.09
303 106 0.40
304 4 0.01
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.36
Consensus pattern (301 bp):
AAGAGCTTAAATAATAGTAAATATAAATATACAATTGACGAAAATAATAAAATGTATAATAAAAT
TAAAATGTACAAAAACATCAAATTGAAGCATTAGCGGAATGATAAAGTAAATGTTTTACTAATAT
AATTGATTGAAGGTGGATTCAAATCTCACCAGTTTCAATTTTTATTGAGTTTTTAAAATAAAAGA
ACTAAAATACCCTCGAATAATATAACTTACTTTTATTACGAATAGGCATTTCTATATTTCTCATA
ACCAAGTTGGTACCTAGTTAACTCATGACACCAACTCAATC
Found at i:25115660 original size:3 final size:3
Alignment explanation
Indices: 25115646--25115747 Score: 109
Period size: 3 Copynumber: 34.0 Consensus size: 3
25115636 TATTTACCAC
* * *
25115646 TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT TTT CTAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * * *
25115691 TAT TAT TAT CAT TAT TAT TAT TAG TAT T-T TAC TAT TAT TAT TAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
25115738 TAT TAAT TAT
1 TAT T-AT TAT
25115748 CCCTTAATAT
Statistics
Matches: 81, Mismatches: 14, Indels: 8
0.79 0.14 0.08
Matches are distributed among these distances:
2 4 0.05
3 73 0.90
4 4 0.05
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:25115675 original size:42 final size:42
Alignment explanation
Indices: 25115628--25115718 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
25115618 TTTCGTATTC
*
25115628 TATTATTATATTTACCACTATTAATATTATTATTATTATTAT
1 TATTATTATATTTACCACTATTAATATTATCATTATTATTAT
* * * *
25115670 TATTATTTTATTTTCTACTATTATTATTATCATTATTATTAT
1 TATTATTATATTTACCACTATTAATATTATCATTATTATTAT
*
25115712 TAGTATT
1 TATTATT
25115719 TTACTATTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.60
Consensus pattern (42 bp):
TATTATTATATTTACCACTATTAATATTATCATTATTATTAT
Found at i:25122905 original size:18 final size:17
Alignment explanation
Indices: 25122882--25122952 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 17
25122872 AGTTTGACAA
25122882 ATTAATACATCTCACCAT
1 ATTAATACAT-TCACCAT
* *
25122900 ATTAATACAAATCACCAA
1 ATTAATAC-ATTCACCAT
*
25122918 ATTAACACAGTTCACCAT
1 ATTAATACA-TTCACCAT
* *
25122936 AATAATATAATTCACCA
1 ATTAATA-CATTCACCA
25122953 AGTTAACATA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
17 1 0.02
18 39 0.93
19 2 0.05
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.28
Consensus pattern (17 bp):
ATTAATACATTCACCAT
Found at i:25122921 original size:36 final size:36
Alignment explanation
Indices: 25122879--25122967 Score: 108
Period size: 36 Copynumber: 2.5 Consensus size: 36
25122869 CACAGTTTGA
* *
25122879 CAAATTAATACA-TCTCACCATATTAATACAAATCAC
1 CAAATTAACACAGT-TCACCATAATAATACAAATCAC
* *
25122915 CAAATTAACACAGTTCACCATAATAATATAATTCAC
1 CAAATTAACACAGTTCACCATAATAATACAAATCAC
* *
25122951 CAAGTTAACATAGTTCA
1 CAAATTAACACAGTTCA
25122968 TAATATAACA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
36 45 0.98
37 1 0.02
ACGTcount: A:0.46, C:0.22, G:0.03, T:0.28
Consensus pattern (36 bp):
CAAATTAACACAGTTCACCATAATAATACAAATCAC
Found at i:25122967 original size:18 final size:17
Alignment explanation
Indices: 25122911--25122967 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
25122901 TTAATACAAA
*
25122911 TCACCAAATTAACACAGT
1 TCACC-AATTAACATAGT
* * *
25122929 TCACCATAATAATATAAT
1 TCACCA-ATTAACATAGT
25122947 TCACCAAGTTAACATAGT
1 TCACCAA-TTAACATAGT
25122965 TCA
1 TCA
25122968 TAATATAACA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
17 2 0.07
18 28 0.93
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.28
Consensus pattern (17 bp):
TCACCAATTAACATAGT
Found at i:25124716 original size:32 final size:31
Alignment explanation
Indices: 25124651--25124717 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 31
25124641 ACCTAAAATT
* *
25124651 ATTAATTCTAATTATTCTAATATTTTATATA
1 ATTAATTCTAATTATTCTAATATATAATATA
*
25124682 ATTAATTCTCAATTATT-TAATTATATAATCTA
1 ATTAATTCT-AATTATTCTAA-TATATAATATA
25124714 ATTA
1 ATTA
25124718 TGATTTTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 12 0.39
32 19 0.61
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (31 bp):
ATTAATTCTAATTATTCTAATATATAATATA
Found at i:25125199 original size:15 final size:15
Alignment explanation
Indices: 25125175--25125210 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
25125165 TAAGTTATTT
* *
25125175 TATTTAATTATTTAA
1 TATTTTATTATTCAA
25125190 TATTTTATTATTCAA
1 TATTTTATTATTCAA
25125205 TATTTT
1 TATTTT
25125211 TATTTTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTTTATTATTCAA
Found at i:25128514 original size:13 final size:13
Alignment explanation
Indices: 25128496--25128524 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
25128486 CCATCAGTTC
25128496 ACCACCCCAAATA
1 ACCACCCCAAATA
25128509 ACCACCCCAAATA
1 ACCACCCCAAATA
25128522 ACC
1 ACC
25128525 CATTTACAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.48, G:0.00, T:0.07
Consensus pattern (13 bp):
ACCACCCCAAATA
Found at i:25128954 original size:13 final size:14
Alignment explanation
Indices: 25128927--25128956 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
25128917 TTCAAGGTGA
25128927 TTTTTATTTCTATT
1 TTTTTATTTCTATT
25128941 TTTTTATTTC-ATT
1 TTTTTATTTCTATT
25128954 TTT
1 TTT
25128957 AAACCTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTATTTCTATT
Found at i:25129613 original size:22 final size:21
Alignment explanation
Indices: 25129565--25129613 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
25129555 TCATTTTCTG
*
25129565 TTATTTATTAATTTTAATATT
1 TTATTTATTAATTTAAATATT
25129586 TATATTTATT-ATATTAAATATAT
1 T-TATTTATTAAT-TTAAATAT-T
25129609 TTATT
1 TTATT
25129614 ATATGTCTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 3 0.12
22 19 0.79
23 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATTTATTAATTTAAATATT
Found at i:25129730 original size:25 final size:27
Alignment explanation
Indices: 25129702--25129758 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 27
25129692 ATATATCATC
* *
25129702 TATATATGTGTTTTAAATATTA-T-GT
1 TATATATATATTTTAAATATTATTAGT
*
25129727 TATATATATATTTTCAATATTATTAGT
1 TATATATATATTTTAAATATTATTAGT
25129754 TATAT
1 TATAT
25129759 TTTCTTATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 19 0.70
26 1 0.04
27 7 0.26
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (27 bp):
TATATATATATTTTAAATATTATTAGT
Found at i:25129755 original size:27 final size:25
Alignment explanation
Indices: 25129675--25129758 Score: 71
Period size: 25 Copynumber: 3.2 Consensus size: 25
25129665 ATATAGTGTA
* *
25129675 TTATATATATAATTTTTATATATCAT-
1 TTATATATAT-A-TTTTAAATATTATG
* * *
25129701 CTATATATGTGTTTTAAATATTATG
1 TTATATATATATTTTAAATATTATG
*
25129726 TTATATATATATTTTCAATATTATTAG
1 TTATATATATATTTTAAATATTA-T-G
25129753 TTATAT
1 TTATAT
25129759 TTTCTTATAA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
24 11 0.24
25 19 0.41
26 9 0.20
27 7 0.15
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.56
Consensus pattern (25 bp):
TTATATATATATTTTAAATATTATG
Found at i:25130049 original size:24 final size:25
Alignment explanation
Indices: 25130015--25130081 Score: 86
Period size: 24 Copynumber: 2.8 Consensus size: 25
25130005 CGTACTATTC
* *
25130015 ATATATTTTTATGTTATTTCG-TAT
1 ATATATCTTTATATTATTTCGTTAT
25130039 ATATATCTTTATATTATTT-GTTAT
1 ATATATCTTTATATTATTTCGTTAT
*
25130063 ATATTTCTTT-TATTATTTC
1 ATATATCTTTATATTATTTC
25130082 ATGTATATGT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 9 0.24
24 29 0.76
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.64
Consensus pattern (25 bp):
ATATATCTTTATATTATTTCGTTAT
Found at i:25139745 original size:20 final size:20
Alignment explanation
Indices: 25139716--25139756 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
25139706 TGAAGACTTG
* *
25139716 ATGCGCATCACGAAAAAAGA
1 ATGCGAATCACCAAAAAAGA
*
25139736 ATGCGAATCACCAAAAGAGA
1 ATGCGAATCACCAAAAAAGA
25139756 A
1 A
25139757 GTCATGGAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.20, G:0.20, T:0.10
Consensus pattern (20 bp):
ATGCGAATCACCAAAAAAGA
Found at i:25142616 original size:73 final size:73
Alignment explanation
Indices: 25142474--25142636 Score: 204
Period size: 73 Copynumber: 2.2 Consensus size: 73
25142464 TCAATTTCTG
* * * * * *
25142474 TTCAATTTATATTTTTCAAAAAAATCAACTCATGTTCGAGAGGTGAGTTGGGCCTCGAGGTACGT
1 TTCAATTTCTATTTTTC-AAAAAATCAACTCATATTCGAGAGGTGAGTTGAGCCTCGAGGCAAGC
25142539 TGAGGTATT
65 TGAGGTATT
*
25142548 TTCAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC-AGGGCAAG
1 TTCAATTTCTATTTTTCAAAAAATCAACTCATATT-CGAGAGGTGAGTTGAGCCTCGA-GGCAAG
25142611 CTGAGGTATT
64 CTGAGGTATT
* *
25142621 TTCAATTCCTGTTTTT
1 TTCAATTTCTATTTTT
25142637 TTTAATGCAT
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
72 17 0.22
73 45 0.58
74 16 0.21
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (73 bp):
TTCAATTTCTATTTTTCAAAAAATCAACTCATATTCGAGAGGTGAGTTGAGCCTCGAGGCAAGCT
GAGGTATT
Found at i:25142919 original size:14 final size:14
Alignment explanation
Indices: 25142900--25142935 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
25142890 TGCTGAGGTA
*
25142900 TTTTCAGTTTCTGT
1 TTTTCAATTTCTGT
25142914 TTTTCAAATTTCTGT
1 TTTTC-AATTTCTGT
25142929 TTTTCAA
1 TTTTCAA
25142936 AAATCAACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.17, C:0.14, G:0.08, T:0.61
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:25142927 original size:15 final size:15
Alignment explanation
Indices: 25142907--25142936 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25142897 GTATTTTCAG
25142907 TTTCTGTTTTTCAAA
1 TTTCTGTTTTTCAAA
25142922 TTTCTGTTTTTCAAA
1 TTTCTGTTTTTCAAA
25142937 AATCAACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTCTGTTTTTCAAA
Found at i:25142932 original size:191 final size:185
Alignment explanation
Indices: 25142546--25143059 Score: 525
Period size: 191 Copynumber: 2.8 Consensus size: 185
25142536 CGTTGAGGTA
* * *
25142546 TTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGGGCAAG
1 TTTTTAATTTCTA-TTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAAG
* * *
25142611 CTGAGGTATTTTCAATTCCTGTTTTTTTTAATGCATGTTTTCAAAAAATCAACTCATATTGCGAG
64 CTGAGGTATTTTCAATTTCTG---TTTTCAATTC-TGTTTTCAAAAAATCAACTCATATTGCGAG
*
25142676 AGGTAAGTTGAGCCTTGGGCCACATACCAAGGTATTTTCAAATTCTGTTGCTCAAATTTTG
125 AGGTGAGTTGAGCCTTGGGCCACATACCAAGGTATTTTCAAATTCTGTTGCTCAAATTTTG
* *
25142737 TTTTTAATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACG
1 TTTTTAATTTCTA-TTTT-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAAG
* * *
25142802 CTGAGGTAATTTGAATTTCTGTTTCTCAATTTCTGCTTTTCAAAAAAATCAACTTATATTGCGAG
64 CTGAGGTATTTTCAATTTCTGTTT-TCAA-TTCTG-TTTTC-AAAAAATCAACTCATATTGCGAG
* * ** ** **
25142867 AGGTGAGTTG-GGCTT-GGCTCACATGCTGAGGTATTTTCAGTTTCTGTTTTTCAAATTTCTG
125 AGGTGAGTTGAGCCTTGGGC-CACATACCAAGGTATTTTCAAATTCTGTTGCTCAAATTT-TG
*
25142928 ---TT--TTTC-A-----AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATG
1 TTTTTAATTTCTATTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACAAG
* * * * *
25142982 CCGAGGTATTTTCAAATTATGTTTTCAAATTATGTTTTTC-AAAAATCAACTCAGATTGCGAGAG
64 CTGAGGTATTTTCAATTTCTGTTTTC-AATTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAG
*
25143046 GTGAGTTGAACCTT
127 GTGAGTTGAGCCTT
25143060 TTAATTTATG
Statistics
Matches: 278, Mismatches: 34, Indels: 35
0.80 0.10 0.10
Matches are distributed among these distances:
177 30 0.11
178 42 0.15
179 11 0.04
180 25 0.09
185 1 0.00
186 4 0.01
188 5 0.02
189 8 0.03
190 43 0.15
191 108 0.39
192 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (185 bp):
TTTTTAATTTCTATTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAAGCT
GAGGTATTTTCAATTTCTGTTTTCAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGA
GTTGAGCCTTGGGCCACATACCAAGGTATTTTCAAATTCTGTTGCTCAAATTTTG
Found at i:25142982 original size:90 final size:89
Alignment explanation
Indices: 25142730--25143054 Score: 394
Period size: 89 Copynumber: 3.7 Consensus size: 89
25142720 CTGTTGCTCA
* * *
25142730 AATTT-TGTTTTT-AATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AATTTCTGTTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * *
25142793 CAGG--ACACGCTGAGGTAATTTG
66 CAGGTCACATGCTGAGGTATTTTC
* * *
25142815 AATTTCTGTTTCTCAATTTCTGCTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTG-GG
1 AATTTCTGTTTTTCAATTTCTGCTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
25142879 CT-TGGCTCACATGCTGAGGTATTTTC
64 CTCAGG-TCACATGCTGAGGTATTTTC
* *
25142905 AGTTTCTGTTTTTCAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 AATTTCTGTTTTTC-AATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
25142970 TCAGGTCACATGCCGAGGTATTTTC
65 TCAGGTCACATGCTGAGGTATTTTC
* * * * * *
25142995 AAATTATG-TTTTCAAATTATGTTTTTCAAAAATCAACTCAGATTGCGAGAGGTGAGTTGA
1 AATTTCTGTTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
25143055 ACCTTTTAAT
Statistics
Matches: 207, Mismatches: 23, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
85 5 0.02
86 6 0.03
87 15 0.07
88 47 0.23
89 65 0.31
90 54 0.26
91 15 0.07
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (89 bp):
AATTTCTGTTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CAGGTCACATGCTGAGGTATTTTC
Found at i:25143006 original size:13 final size:14
Alignment explanation
Indices: 25142990--25143024 Score: 63
Period size: 13 Copynumber: 2.6 Consensus size: 14
25142980 TGCCGAGGTA
25142990 TTTTCAAATTATG-
1 TTTTCAAATTATGT
25143003 TTTTCAAATTATGT
1 TTTTCAAATTATGT
25143017 TTTTCAAA
1 TTTTCAAA
25143025 AATCAACTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.54
Consensus pattern (14 bp):
TTTTCAAATTATGT
Found at i:25143081 original size:14 final size:14
Alignment explanation
Indices: 25143058--25143091 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
25143048 GAGTTGAACC
*
25143058 TTTT-AATTTATGT
1 TTTTCAATTTATAT
25143071 TTTTCAATTTATAT
1 TTTTCAATTTATAT
25143085 TTTTCAA
1 TTTTCAA
25143092 AAAAAAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.65
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:25143325 original size:44 final size:43
Alignment explanation
Indices: 25143276--25143420 Score: 191
Period size: 44 Copynumber: 3.3 Consensus size: 43
25143266 TAGATTTGGC
25143276 CTCTCTGAAGTTGCAGTGGAGCAGGTCAAAGTTGCAAATCTTGT
1 CTCTCTGAAGTTGCAGTGGAGCAGGTCAAAGTT-CAAATCTTGT
*
25143320 CTCTCTGAAGTTGCAGTAGAGCAGGTCAAAGTTACAAATCTTGT
1 CTCTCTGAAGTTGCAGTGGAGCAGGTCAAAGTT-CAAATCTTGT
* * * * *
25143364 CTCCCTGAAGTTGCAGTGGAGCTGATCAAGGATATCAAATCTTAT
1 CTCTCTGAAGTTGCAGTGGAGCAGGTCAAAG-T-TCAAATCTTGT
*
25143409 CTTTCTGAAGTT
1 CTCTCTGAAGTT
25143421 ACAAGTGAAG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
44 68 0.76
45 20 0.22
46 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (43 bp):
CTCTCTGAAGTTGCAGTGGAGCAGGTCAAAGTTCAAATCTTGT
Found at i:25143543 original size:88 final size:89
Alignment explanation
Indices: 25143400--25143574 Score: 244
Period size: 88 Copynumber: 2.0 Consensus size: 89
25143390 CAAGGATATC
* * ** * *
25143400 AAATCTTATCTTTCTGAAGTTACAAGTGAAGTGGATCGAAGCCACAAATCTCATATCCTTGAAGT
1 AAATCTTATCTTTATGAAGCTACAAGTGAAGCAGATCAAAGCCACAAATCTCATATCCTTAAAGT
*
25143465 TACATTAGAGAAGATTGAAGCTGT
66 TACATCAGAGAAGATTGAAGCTGT
* *
25143489 AAATCTTATCTTTATGAAGCTGCATG-GAAGCAGATCAAAGCCACAAATCTCATATCCTTAAAGT
1 AAATCTTATCTTTATGAAGCTACAAGTGAAGCAGATCAAAGCCACAAATCTCATATCCTTAAAGT
* *
25143553 TACATCGGAGTAGATTGAAGCT
66 TACATCAGAGAAGATTGAAGCT
25143575 ACAAGGCATA
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
88 53 0.71
89 22 0.29
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (89 bp):
AAATCTTATCTTTATGAAGCTACAAGTGAAGCAGATCAAAGCCACAAATCTCATATCCTTAAAGT
TACATCAGAGAAGATTGAAGCTGT
Found at i:25143873 original size:13 final size:13
Alignment explanation
Indices: 25143855--25143883 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
25143845 CCATCAGCTC
25143855 ACCACCCCAAATA
1 ACCACCCCAAATA
25143868 ACCACCCCAAATA
1 ACCACCCCAAATA
25143881 ACC
1 ACC
25143884 CATTTACAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.48, G:0.00, T:0.07
Consensus pattern (13 bp):
ACCACCCCAAATA
Found at i:25144313 original size:13 final size:14
Alignment explanation
Indices: 25144286--25144315 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
25144276 TTCAAGGTGA
25144286 TTTTTATTTCTATT
1 TTTTTATTTCTATT
25144300 TTTTTATTTC-ATT
1 TTTTTATTTCTATT
25144313 TTT
1 TTT
25144316 AAACCTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTATTTCTATT
Found at i:25144949 original size:19 final size:21
Alignment explanation
Indices: 25144925--25144964 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
25144915 CCTCTTTGTT
25144925 AATTTAC-TGTTTT-ATTTTC
1 AATTTACTTGTTTTCATTTTC
25144944 AATTTACTTGTTTTCATTTTC
1 AATTTACTTGTTTTCATTTTC
25144965 TGTTATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.37
20 6 0.32
21 6 0.32
ACGTcount: A:0.20, C:0.12, G:0.05, T:0.62
Consensus pattern (21 bp):
AATTTACTTGTTTTCATTTTC
Found at i:25145119 original size:26 final size:25
Alignment explanation
Indices: 25145078--25145147 Score: 70
Period size: 29 Copynumber: 2.7 Consensus size: 25
25145068 TATAGTGTAT
*
25145078 TATATATATA-ATTTTTATATATCA
1 TATATATATATATTTTTAAATATCA
* *
25145102 TATATATATATGTGTTTTAAATATTA
1 TATATATATATAT-TTTTAAATATCA
25145128 TGTTATATATATATATTTTT
1 ---TATATATATATATTTTT
25145148 TCAATATTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
24 10 0.27
25 1 0.03
26 10 0.27
28 4 0.11
29 12 0.32
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.57
Consensus pattern (25 bp):
TATATATATATATTTTTAAATATCA
Found at i:25145148 original size:29 final size:33
Alignment explanation
Indices: 25145101--25145166 Score: 95
Period size: 31 Copynumber: 2.1 Consensus size: 33
25145091 TTTATATATC
25145101 ATATATATATATGTGTTTTAAATATTA-T-GTT
1 ATATATATATATGTGTTTTAAATATTATTAGTT
*
25145132 ATATATATATAT-T-TTTTCAATATTATTAGTT
1 ATATATATATATGTGTTTTAAATATTATTAGTT
25145163 ATAT
1 ATAT
25145167 TTTCTTATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 11 0.34
30 2 0.06
31 19 0.59
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.56
Consensus pattern (33 bp):
ATATATATATATGTGTTTTAAATATTATTAGTT
Found at i:25145449 original size:24 final size:24
Alignment explanation
Indices: 25145418--25145488 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
25145408 AATATCGTAC
*
25145418 TATT-CATATATTTTTATGTTATT
1 TATTACATATATTTTTATATTATT
*
25145441 TATTACATATATCTTTATATTATT
1 TATTACATATATTTTTATATTATT
* *
25145465 TGTT--ATATATTTCTTTTATTATT
1 TATTACATATATTT-TTATATTATT
25145488 T
1 T
25145489 CATGTATATG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 7 0.17
23 14 0.34
24 20 0.49
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.65
Consensus pattern (24 bp):
TATTACATATATTTTTATATTATT
Found at i:25145496 original size:23 final size:24
Alignment explanation
Indices: 25145423--25145497 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
25145413 CGTACTATTC
* * *
25145423 ATATATTTTTATGTTATTT-ATTAC
1 ATATATCTTTATATTATTTCA-TAT
**
25145447 ATATATCTTTATATTATTTGTTAT
1 ATATATCTTTATATTATTTCATAT
* *
25145471 ATATTTCTTT-TATTATTTCATGT
1 ATATATCTTTATATTATTTCATAT
25145494 ATAT
1 ATAT
25145498 GTTGTTAAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 14 0.33
24 28 0.67
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63
Consensus pattern (24 bp):
ATATATCTTTATATTATTTCATAT
Found at i:25147056 original size:14 final size:13
Alignment explanation
Indices: 25147037--25147066 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
25147027 CTTTTGAGTG
25147037 TTTTTTATATTTAT
1 TTTTTTAT-TTTAT
25147051 TTTTTTATTTTAT
1 TTTTTTATTTTAT
25147064 TTT
1 TTT
25147067 AAAAGGGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTATTTTAT
Found at i:25149516 original size:16 final size:16
Alignment explanation
Indices: 25149497--25149556 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 16
25149487 TTACATTTGG
25149497 TTTTAAAAATATTTCA
1 TTTTAAAAATATTTCA
* * *
25149513 TTTTAGTTATATTTTTCA
1 TTTTA--AAAATATTTCA
*
25149531 TTTTAAAAAAATTGT-A
1 TTTTAAAAATATT-TCA
25149547 TTTTAAAAAT
1 TTTTAAAAAT
25149557 TTTAAAAAGG
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
16 19 0.58
17 1 0.03
18 13 0.39
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTTAAAAATATTTCA
Found at i:25149981 original size:2 final size:2
Alignment explanation
Indices: 25149974--25150056 Score: 166
Period size: 2 Copynumber: 41.5 Consensus size: 2
25149964 GTATAATGAT
25149974 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
25150016 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
25150057 TTTTCACTTC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 81 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:25162514 original size:35 final size:36
Alignment explanation
Indices: 25162475--25162552 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
25162465 GGACTTTCTA
*
25162475 TAAGCCCTCTCCC-TGTGTGGGAG-AAGGACCCCCTG
1 TAAGCCCTCTCCCATGTGTAGGAGCAA-GACCCCCTG
* * *
25162510 TAAGCCTTCTCCCATGTGTAGGAGCAAGACCTCTTG
1 TAAGCCCTCTCCCATGTGTAGGAGCAAGACCCCCTG
25162546 TAAGCCC
1 TAAGCCC
25162553 CTCATATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
35 12 0.33
36 22 0.61
37 2 0.06
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.23
Consensus pattern (36 bp):
TAAGCCCTCTCCCATGTGTAGGAGCAAGACCCCCTG
Found at i:25162548 original size:36 final size:35
Alignment explanation
Indices: 25162475--25162601 Score: 93
Period size: 33 Copynumber: 3.7 Consensus size: 35
25162465 GGACTTTCTA
* * * *
25162475 TAAGCCCTCTCCC-TGTGTGGGAGAAGGACCCCCTG
1 TAAGCCTTCTCCCATGTGTAGGAGAA-GACCTCTTG
25162510 TAAGCCTTCTCCCATGTGTAGGAGCAAGACCTCTTG
1 TAAGCCTTCTCCCATGTGTAGGAG-AAGACCTCTTG
* * * *
25162546 TAAGCC--C-CTCATATATAGGAGTAGGACCTCTTG
1 TAAGCCTTCTCCCATGTGTAGGAG-AAGACCTCTTG
* * *
25162579 TAAACCTCCT-CCATGTGTGGGAG
1 TAAGCCTTCTCCCATGTGTAGGAG
25162602 TAGGACATTT
Statistics
Matches: 73, Mismatches: 14, Indels: 10
0.75 0.14 0.10
Matches are distributed among these distances:
33 26 0.36
34 1 0.01
35 22 0.30
36 22 0.30
37 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.25
Consensus pattern (35 bp):
TAAGCCTTCTCCCATGTGTAGGAGAAGACCTCTTG
Found at i:25162912 original size:14 final size:14
Alignment explanation
Indices: 25162895--25162957 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
25162885 CCCATGTATT
25162895 CCCTCCCACAAGTA
1 CCCTCCCACAAGTA
25162909 CCCTTCCCA-AAGTA
1 CCC-TCCCACAAGTA
25162923 CCCAT-CCACAA-TA
1 CCC-TCCCACAAGTA
* *
25162936 CCTTCCCACGAGTA
1 CCCTCCCACAAGTA
*
25162950 CCTTCCCA
1 CCCTCCCA
25162958 TAGAACCACC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
12 1 0.02
13 12 0.29
14 24 0.57
15 5 0.12
ACGTcount: A:0.27, C:0.48, G:0.06, T:0.19
Consensus pattern (14 bp):
CCCTCCCACAAGTA
Found at i:25167962 original size:85 final size:84
Alignment explanation
Indices: 25167870--25168029 Score: 259
Period size: 85 Copynumber: 1.9 Consensus size: 84
25167860 AATACTTACA
*
25167870 TTTTTTTTAGCAATTTTGCCTTTGTTCTTTCTTT-TTTTAAGTTAAATTTAGTCTGCTTCCAACT
1 TTTTTTTTAGCAATTTTGCCTTTGTTCTTTCTTTCTTTT-AGCTAAATTT-GTCTGCTTCCAACT
25167934 TTCAAAAAGAGTGTTATACTT
64 TTCAAAAAGAGTGTTATACTT
* * *
25167955 TTTTTTTTATCAATTTTGCTTTTGTTCTTTCTTTCTTTTAGCTAAATTTGTCTGCTTCGAACTTT
1 TTTTTTTTAGCAATTTTGCCTTTGTTCTTTCTTTCTTTTAGCTAAATTTGTCTGCTTCCAACTTT
25168020 CAAAAAGAGT
66 CAAAAAGAGT
25168030 TTGCTTGCCC
Statistics
Matches: 70, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
84 25 0.36
85 41 0.59
86 4 0.06
ACGTcount: A:0.21, C:0.14, G:0.11, T:0.54
Consensus pattern (84 bp):
TTTTTTTTAGCAATTTTGCCTTTGTTCTTTCTTTCTTTTAGCTAAATTTGTCTGCTTCCAACTTT
CAAAAAGAGTGTTATACTT
Found at i:25174159 original size:46 final size:46
Alignment explanation
Indices: 25174097--25174463 Score: 522
Period size: 46 Copynumber: 8.0 Consensus size: 46
25174087 AGTGTGCTCT
25174097 CTGATA-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
25174143 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
25174189 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
25174235 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
25174281 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
25174327 GTGACATGAAATGTTTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** *
25174373 GTGACGGGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAAC
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
25174420 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
25174464 TCATGTTGAA
Statistics
Matches: 295, Mismatches: 23, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.00
46 254 0.86
47 40 0.14
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:25176669 original size:37 final size:37
Alignment explanation
Indices: 25176610--25176718 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
25176600 AGCTCAGACG
* *
25176610 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
25176647 AAATCTCCACACGTAGTCATCGGGTCTTATCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
25176684 TACTCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
25176719 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:25176933 original size:47 final size:47
Alignment explanation
Indices: 25176881--25177113 Score: 358
Period size: 47 Copynumber: 5.0 Consensus size: 47
25176871 TTTCACACTA
* * * *
25176881 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * * *
25176928 GCCATTCAGCCTTATCACACATATGCATGCTCACGTTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
25176975 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
25177022 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
25177069 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
25177114 AAAATCCTAA
Statistics
Matches: 169, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 169 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:25176946 original size:22 final size:22
Alignment explanation
Indices: 25176921--25177088 Score: 62
Period size: 22 Copynumber: 7.2 Consensus size: 22
25176911 TCATATTCAC
25176921 CACATTGGCCATTCAGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
*
25176943 CACACATAT-G-CATGCTCA-CGTTCAT
1 --CACAT-TGGCCAT--TCAGCCTT-AT
*
25176968 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
* *
25176990 CACATATATG-CATGTTCA-CATTCAT
1 CACAT-T-GGCCA--TTCAGCCTT-AT
* *
25177015 CACATAGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
* *
25177037 CACATATATG-CATGTTCA-CATTCAT
1 CACAT-T-GGCCA--TTCAGCCTT-AT
*
25177062 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
25177084 CACAT
1 CACAT
25177089 ATATACACAT
Statistics
Matches: 106, Mismatches: 17, Indels: 44
0.63 0.10 0.26
Matches are distributed among these distances:
22 30 0.28
23 25 0.24
24 25 0.24
25 26 0.25
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
CACATTGGCCATTCAGCCTTAT
Found at i:25177145 original size:94 final size:90
Alignment explanation
Indices: 25176948--25177134 Score: 225
Period size: 94 Copynumber: 2.0 Consensus size: 90
25176938 CTTATCACAC
* * * **
25176948 ATATGCATGCTCACGTTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTC
* * * *
25177013 ATCACATAGGCCATTCGGCCTTATCACAT
66 ATCACATA-G-AAAT--GCCTAATCAAAT
25177042 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTC
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTC
25177107 ATCACATA-AAAT-CCTAAATCAAAAT
66 ATCACATAGAAATGCCT-AATC-AAAT
25177132 ATA
1 ATA
25177135 AATTTTCATG
Statistics
Matches: 82, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
88 3 0.04
89 3 0.04
90 6 0.07
91 2 0.02
94 68 0.83
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.32
Consensus pattern (90 bp):
ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTC
ATCACATAGAAATGCCTAATCAAAT
Found at i:25180110 original size:20 final size:19
Alignment explanation
Indices: 25180087--25180139 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
25180077 TTGTAATGTT
25180087 TATATTATATTTTTAATAAA
1 TATATTAT-TTTTTAATAAA
*
25180107 TATACTTATGTTTTT-ATAAT
1 TATA-TTAT-TTTTTAATAAA
25180127 TAT-TTATTTTTTA
1 TATATTATTTTTTA
25180140 TGTATACTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
20 11 0.38
21 9 0.31
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TATATTATTTTTTAATAAA
Found at i:25180292 original size:15 final size:15
Alignment explanation
Indices: 25180272--25180302 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
25180262 TTTAAATACC
25180272 ATTTTAGAATTTTAT
1 ATTTTAGAATTTTAT
25180287 ATTTTAGAATTTTAT
1 ATTTTAGAATTTTAT
25180302 A
1 A
25180303 AAAATATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (15 bp):
ATTTTAGAATTTTAT
Found at i:25180328 original size:22 final size:21
Alignment explanation
Indices: 25180285--25180360 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 21
25180275 TTAGAATTTT
* * *
25180285 ATATTTTAGAATTTTATAAAA
1 ATATTTTAAAATTTTTTTAAA
25180306 ATATTTTAAAACTTTTTTTAAA
1 ATATTTTAAAA-TTTTTTTAAA
* *
25180328 ATATTTTTACATTTTTTGTAATA
1 ATATTTTAAAATTTTTT-TAA-A
25180351 ATATTATTAA
1 ATATT-TTAA
25180361 TTTCAACATA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
21 16 0.36
22 20 0.44
23 6 0.13
24 3 0.07
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (21 bp):
ATATTTTAAAATTTTTTTAAA
Found at i:25180353 original size:23 final size:20
Alignment explanation
Indices: 25180318--25180363 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 20
25180308 ATTTTAAAAC
*
25180318 TTTTTTTAAAATATTTTTACA
1 TTTTTTTAAAATATTATTA-A
25180339 TTTTTTGTAATAATATTATTAA
1 TTTTTT-TAA-AATATTATTAA
25180361 TTT
1 TTT
25180364 CAACATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 6 0.27
22 7 0.32
23 9 0.41
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTTTTTAAAATATTATTAA
Found at i:25180432 original size:20 final size:22
Alignment explanation
Indices: 25180409--25180450 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
25180399 TAAATTTTAG
25180409 TTTTATA-A-TTTATATTTTTT
1 TTTTATAGATTTTATATTTTTT
*
25180429 TTTTCTAGATTTTATATTTTTT
1 TTTTATAGATTTTATATTTTTT
25180451 AAATTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 1 0.05
22 12 0.63
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTATAGATTTTATATTTTTT
Found at i:25180476 original size:10 final size:9
Alignment explanation
Indices: 25180438--25180488 Score: 57
Period size: 9 Copynumber: 5.3 Consensus size: 9
25180428 TTTTTCTAGA
25180438 TTTTATATT
1 TTTTATATT
*
25180447 TTTTAAATTT
1 TTTTATA-TT
25180457 TTTCTATATT
1 TTT-TATATT
*
25180467 TATTTCTATT
1 T-TTTATATT
25180477 TTTTATATT
1 TTTTATATT
25180486 TTT
1 TTT
25180489 AATGTGTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 16 0.46
10 14 0.40
11 5 0.14
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTTATATT
Found at i:25186033 original size:12 final size:12
Alignment explanation
Indices: 25186000--25186033 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
25185990 TTTAAAGACG
25186000 GTTTTATTTAAT
1 GTTTTATTTAAT
* *
25186012 GTATTGTTTAAT
1 GTTTTATTTAAT
25186024 GTTTTATTTA
1 GTTTTATTTA
25186034 TTTATTTAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.65
Consensus pattern (12 bp):
GTTTTATTTAAT
Found at i:25186215 original size:3 final size:3
Alignment explanation
Indices: 25186207--25186241 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
25186197 AAATTTAGAT
25186207 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
25186242 TATGTTATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:25190539 original size:23 final size:21
Alignment explanation
Indices: 25190513--25190558 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 21
25190503 ATATGTTTCT
*
25190513 ATTTAATTTTGATATATTATATA
1 ATTTAATTTT-ATA-ATAATATA
25190536 ATTTAATTTTATAATAATATA
1 ATTTAATTTTATAATAATATA
25190557 AT
1 AT
25190559 ACCATATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.41
22 3 0.14
23 10 0.45
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
ATTTAATTTTATAATAATATA
Found at i:25195801 original size:37 final size:37
Alignment explanation
Indices: 25195740--25195885 Score: 224
Period size: 37 Copynumber: 4.0 Consensus size: 37
25195730 TACGTATGAT
* *
25195740 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
25195775 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
25195812 CACTTATCACTTTGTTTCTTGATCAGATAAGTGCAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
25195849 CACTTATCACTTTATCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
25195886 TAAAGCTATC
Statistics
Matches: 101, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 89 0.88
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:25195899 original size:46 final size:46
Alignment explanation
Indices: 25195849--25196215 Score: 455
Period size: 46 Copynumber: 7.6 Consensus size: 46
25195839 TAAGTGCAGC
* * **
25195849 CACTTATCACTTTATCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
25195895 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
25195941 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
25195993 CACTTATCACTTTATTACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
25196039 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTT--A----TCACTTGATCAGATAAGTATAGCCGAAGCTAT
25196091 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * ** *
25196137 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTT--A----TCACTTGATCAGATAAGTATAGCCGAAGCTAT
25196189 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTATCACTTGATCAGA
25196216 AGTACTCAAA
Statistics
Matches: 287, Mismatches: 16, Indels: 36
0.85 0.05 0.11
Matches are distributed among these distances:
46 152 0.53
47 3 0.01
48 2 0.01
50 3 0.01
51 3 0.01
52 124 0.43
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:25195968 original size:52 final size:52
Alignment explanation
Indices: 25195892--25196209 Score: 444
Period size: 52 Copynumber: 6.3 Consensus size: 52
25195882 TAGCTAAAGC
* *
25195892 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
25195945 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
25195997 TATCAC-TTT-A--T-T-ACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
25196043 TATCACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
25196095 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
25196141 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
25196193 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
25196210 ATCAGAAGTA
Statistics
Matches: 238, Mismatches: 14, Indels: 26
0.86 0.05 0.09
Matches are distributed among these distances:
46 80 0.34
47 5 0.02
48 3 0.01
50 3 0.01
51 6 0.03
52 123 0.52
53 18 0.08
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:25196014 original size:98 final size:98
Alignment explanation
Indices: 25195866--25196215 Score: 592
Period size: 98 Copynumber: 3.6 Consensus size: 98
25195856 CACTTTATCT
* * * *
25195866 CTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAG
1 CTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACTTGATCAGATAAGTATAG
* *
25195931 CCGAAGCTATCACTTATCACTTTTCACTTGTCA
66 CCGAAGCTATTACTTATCACTTTCCACTTGTCA
* *
25195964 CTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATTACTTGATCAGATAAGTATAG
1 CTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACTTGATCAGATAAGTATAG
25196029 CCGAAGCTATTACTTATCACTTTCCACTTGTCA
66 CCGAAGCTATTACTTATCACTTTCCACTTGTCA
*
25196062 CTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACTTGATCAGATAAGTATAG
1 CTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACTTGATCAGATAAGTATAG
25196127 CCGAAGCTATTACTTATCACTTTCCACTTGTCA
66 CCGAAGCTATTACTTATCACTTTCCACTTGTCA
* * *
25196160 CTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTTGATCAGA
1 CTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACTTGATCAGA
25196216 AGTACTCAAA
Statistics
Matches: 239, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 239 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (98 bp):
CTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACTTGATCAGATAAGTATAG
CCGAAGCTATTACTTATCACTTTCCACTTGTCA
Found at i:25211696 original size:9 final size:8
Alignment explanation
Indices: 25211671--25211695 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
25211661 TAAAGAAAAA
25211671 GAGGGGGG
1 GAGGGGGG
25211679 GAGGGGGG
1 GAGGGGGG
25211687 GAGGGGGG
1 GAGGGGGG
25211695 G
1 G
25211696 GGCATAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.88, T:0.00
Consensus pattern (8 bp):
GAGGGGGG
Found at i:25214162 original size:29 final size:28
Alignment explanation
Indices: 25214096--25214191 Score: 74
Period size: 29 Copynumber: 3.4 Consensus size: 28
25214086 AAAAATATAA
*
25214096 AAATTA-AAAAAACTT-TATAAAAATATT
1 AAATTATAAAAAA-TTATATAAACATATT
* *
25214123 AAA-TATTAAAAATTATATAAACCTACTT
1 AAATTATAAAAAATTATATAAACATA-TT
* * *
25214151 AAATTATAAAAAATCATAAAAACTTA-T
1 AAATTATAAAAAATTATATAAACATATT
25214178 AATTATTATAAAAA
1 AA--ATTATAAAAA
25214192 TATAAAAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
26 4 0.07
27 19 0.34
28 5 0.09
29 28 0.50
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.33
Consensus pattern (28 bp):
AAATTATAAAAAATTATATAAACATATT
Found at i:25214164 original size:10 final size:10
Alignment explanation
Indices: 25214151--25214227 Score: 61
Period size: 10 Copynumber: 8.0 Consensus size: 10
25214141 AAACCTACTT
25214151 AAATTATAAA
1 AAATTATAAA
*
25214161 AAATCATAAA
1 AAATTATAAA
*
25214171 AACTTAT-AA
1 AAATTATAAA
**
25214180 TTATTAT-AA
1 AAATTATAAA
25214189 AAA-TATAAA
1 AAATTATAAA
* *
25214198 AAATTTTAAT
1 AAATTATAAA
*
25214208 AGATTATAAA
1 AAATTATAAA
*
25214218 AAAATATAAA
1 AAATTATAAA
25214228 TTAATAAAAC
Statistics
Matches: 50, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
8 3 0.06
9 14 0.28
10 33 0.66
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (10 bp):
AAATTATAAA
Found at i:25214190 original size:27 final size:26
Alignment explanation
Indices: 25214147--25214218 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 26
25214137 ATATAAACCT
*
25214147 ACTTA-AATTA-TAAAAAATCATAAAA
1 ACTTATAATTATTATAAAAT-ATAAAA
25214172 ACTTATAATTATTATAAAAATATAAAA
1 ACTTATAATTATTAT-AAAATATAAAA
* * *
25214199 AATTTTAATAGATTATAAAA
1 ACTTATAAT-TATTATAAAA
25214219 AAATATAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 5 0.13
26 5 0.13
27 19 0.49
28 10 0.26
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (26 bp):
ACTTATAATTATTATAAAATATAAAA
Found at i:25214199 original size:28 final size:29
Alignment explanation
Indices: 25214153--25214220 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
25214143 ACCTACTTAA
*
25214153 ATTATAAAAAATCATAAAAACTTATAAT-T
1 ATTATAAAAAATCATAAAAA-TTATAATAG
*
25214182 ATTAT-AAAAAT-ATAAAAAATTTTAATAG
1 ATTATAAAAAATCAT-AAAAATTATAATAG
25214210 ATTATAAAAAA
1 ATTATAAAAAA
25214221 ATATAAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 8 0.24
28 16 0.47
29 10 0.29
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (29 bp):
ATTATAAAAAATCATAAAAATTATAATAG
Found at i:25217447 original size:22 final size:23
Alignment explanation
Indices: 25217422--25217467 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
25217412 CAACCAAATC
25217422 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
25217444 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
25217467 A
1 A
25217468 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:25217473 original size:23 final size:23
Alignment explanation
Indices: 25217429--25217473 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
25217419 ATCAATTCAA
*
25217429 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
25217452 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
25217474 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:25220944 original size:42 final size:40
Alignment explanation
Indices: 25220869--25220996 Score: 141
Period size: 42 Copynumber: 3.1 Consensus size: 40
25220859 GTGTGCCAAA
25220869 AGAAGCTCGAAAGATGAACAGAAGCTCATAAGAGCTGAAT
1 AGAAGCTCGAAAGATGAACAGAAGCTCATAAGAGCTGAAT
* *
25220909 AGAAGCTCGAAAAAGCTGAATAGAAGCTCGA-AAGAGCTGAAT
1 AGAAGCTCG--AAAGATGAACAGAAGCTC-ATAAGAGCTGAAT
* * * * *
25220951 AGAAGCTCGTAAGAGCTAAACAGAAACTCATAAGAGTTGAAC
1 AGAAGCTCG-AA-AGATGAACAGAAGCTCATAAGAGCTGAAT
25220993 AGAA
1 AGAA
25220997 AGTAAAATAT
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
40 9 0.12
41 3 0.04
42 62 0.83
43 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.24, T:0.15
Consensus pattern (40 bp):
AGAAGCTCGAAAGATGAACAGAAGCTCATAAGAGCTGAAT
Found at i:25220997 original size:21 final size:21
Alignment explanation
Indices: 25220883--25220996 Score: 124
Period size: 21 Copynumber: 5.4 Consensus size: 21
25220873 GCTCGAAAGA
25220883 TGAACAGAAGCTCATAAGAGC
1 TGAACAGAAGCTCATAAGAGC
* *
25220904 TGAATAGAAGCTCGA-AAAAGC
1 TGAACAGAAGCTC-ATAAGAGC
*
25220925 TGAATAGAAGCTCGA-AAGAGC
1 TGAACAGAAGCTC-ATAAGAGC
* *
25220946 TGAATAGAAGCTCGTAAGAGC
1 TGAACAGAAGCTCATAAGAGC
* * *
25220967 TAAACAGAAACTCATAAGAGT
1 TGAACAGAAGCTCATAAGAGC
25220988 TGAACAGAA
1 TGAACAGAA
25220997 AGTAAAATAT
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
21 80 0.99
22 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.24, T:0.16
Consensus pattern (21 bp):
TGAACAGAAGCTCATAAGAGC
Found at i:25226283 original size:28 final size:28
Alignment explanation
Indices: 25226229--25226285 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
25226219 TGATATTAGG
* *
25226229 ATATAAAAAAAGTATAAATATTGTAAAA
1 ATATAAAAAAAGTATAAATACTATAAAA
*
25226257 ATATAAAAAAATTAATAAA-ACTATAAAA
1 ATATAAAAAAAGT-ATAAATACTATAAAA
25226285 A
1 A
25226286 AAAATTATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 20 0.80
29 5 0.20
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (28 bp):
ATATAAAAAAAGTATAAATACTATAAAA
Found at i:25229967 original size:17 final size:17
Alignment explanation
Indices: 25229945--25229982 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
25229935 GAACAGTAGT
25229945 CTGAATAGTTATTTTTG
1 CTGAATAGTTATTTTTG
25229962 CTGAATAGTTATTTTTG
1 CTGAATAGTTATTTTTG
25229979 CTGA
1 CTGA
25229983 TTAAAAACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.50
Consensus pattern (17 bp):
CTGAATAGTTATTTTTG
Found at i:25230199 original size:6 final size:6
Alignment explanation
Indices: 25230188--25230221 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
25230178 TGCTTAGTTG
*
25230188 GTATAT GTATAT GTATAT GTATAT GTATAC GTAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTAT
25230222 GTGTGTGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.47
Consensus pattern (6 bp):
GTATAT
Found at i:25231052 original size:2 final size:2
Alignment explanation
Indices: 25231045--25231071 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
25231035 CTTAGGCCAA
25231045 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
25231072 AAAGACTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:25236415 original size:16 final size:16
Alignment explanation
Indices: 25236394--25236424 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25236384 AAGAAACGAT
*
25236394 AAATATGTATATATAA
1 AAATATGTACATATAA
25236410 AAATATGTACATATA
1 AAATATGTACATATA
25236425 TATGGGTGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (16 bp):
AAATATGTACATATAA
Found at i:25237003 original size:3 final size:3
Alignment explanation
Indices: 25236956--25236991 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
25236946 AACATAAACA
*
25236956 AAT AAGT AAT AAT AAT AAT AAT AAT AAT AAA AAT AA
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
25236992 ACAAAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:25238668 original size:87 final size:87
Alignment explanation
Indices: 25238567--25238897 Score: 475
Period size: 87 Copynumber: 3.8 Consensus size: 87
25238557 TCAACTTGGG
* * *
25238567 CCACTGCAATTTCAGGGGGATAAGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
1 CCACTGTAACTTCAGGGAGATAAGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
25238632 AGATCTCTTATTTTAATCCGCT
66 AGATCTCTTATTTTAATCCGCT
*
25238654 CCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
1 CCACTGTAACTTCAGGGAGATAAGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
25238719 AGATCTCTTATTTTAATCCGCT
66 AGATCTCTTATTTTAATCCGCT
* *
25238741 CCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATG
1 CCACTGTAACTTCAGGGAGATAAGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
*** * *
25238806 AGATCTCTGGCTTCAATCTGCT
66 AGATCTCTTATTTTAATCCGCT
* * * * * *
25238828 CCACTGTAACCTCAGGGAGATAAGAT-CTGAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAG
1 CCACTGTAACTTCAGGGAGATAAGATAGTG---TCTTCGATCTGCTCCGCTGTAATCTCAGGGAG
25238892 ATAAGA
63 ATAAGA
25238898 CCTGATGTGA
Statistics
Matches: 223, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
86 2 0.01
87 188 0.84
89 33 0.15
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (87 bp):
CCACTGTAACTTCAGGGAGATAAGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
AGATCTCTTATTTTAATCCGCT
Found at i:25238669 original size:44 final size:43
Alignment explanation
Indices: 25238597--25239067 Score: 302
Period size: 44 Copynumber: 10.9 Consensus size: 43
25238587 TAAGATAGTG
* *
25238597 TCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCT
1 TCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCT
* * * * * *
25238640 TATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGATAGT-G
1 T-CTTCAATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTCT
* *
25238684 TCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCT
1 TCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCT
* * * * * *
25238727 TATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGATAGT-G
1 T-CTTCAATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTCT
* * *
25238771 TCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATGAGATCTCT
1 TCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCT
* * *
25238814 GGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAT
1 -TCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT--CT
*** *
25238860 TCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGA-C-CT
1 TCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCT
** * * * * *
25238901 GATGT-GATCTTCTCTACTGTAA-CTTCAGAGAGATACGATC-C-
1 TCT-TCAATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTCT
* * * *
25238942 T-TT-AATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-TACT
1 TCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT-CT
** * *
25238983 ATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
1 -TCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT---CT
*** *
25239030 TCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 TCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGA
25239068 CCTGTATTAT
Statistics
Matches: 329, Mismatches: 73, Indels: 49
0.73 0.16 0.11
Matches are distributed among these distances:
39 25 0.08
40 4 0.01
41 27 0.08
42 6 0.02
43 65 0.20
44 129 0.39
45 35 0.11
46 36 0.11
47 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (43 bp):
TCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCT
Found at i:25238781 original size:174 final size:174
Alignment explanation
Indices: 25238567--25239067 Score: 482
Period size: 174 Copynumber: 2.9 Consensus size: 174
25238557 TCAACTTGGG
* *
25238567 CCACTGCAATTTCAGGGGGATAAGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
1 CCACTGCAACTTCAGGGAGATAAGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
* * * * * *
25238632 AGATCTCTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTG-TCTTCGATCTGC
66 AGATCTCTGACTTCAATCCGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGATCTTCGATCTGC
*
25238696 TCCGCTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCCGCT
130 TCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCCGCT
* * *
25238741 CCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATG
1 CCACTGCAACTTCAGGGAGATAAGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
* * * *
25238806 AGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAATTCTTTGGTCTG
66 AGATCTCTGACTTCAATCCGCTCCACTGTAACCTCAGGGAGATAAGATCTG-A-TCTTCGATCTG
* * * * **
25238871 TTCCACTGTAATCTCAGGGAGATAAGA-C-CTGA-TGTGATCTTCT
129 CTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCCGCT
* * * * * ** * ** *
25238914 CTACTGTAACTTCAGAGAGATACG--A-T-CCTTTAATCCGCTCCATTGTAATCTCAAGGAGATA
1 CCACTGCAACTTCAGGGAGATAAGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
* ** * * * * *
25238975 GGAT-TACT-ATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGT
66 AGATCT-CTGA-CTTCAATCCGCTCCACTGTAACCTCAGGGAGATAAGATCTG--A-TCTTCGAT
*
25239038 CTGTTCCACTGTAATCTCAGGGAGATAAGA
126 CTGCTCCACTGTAATCTCAGGGAGATAAGA
25239068 CCTGTATTAT
Statistics
Matches: 282, Mismatches: 39, Indels: 16
0.84 0.12 0.05
Matches are distributed among these distances:
168 1 0.00
169 69 0.24
170 42 0.15
171 1 0.00
173 30 0.11
174 104 0.37
175 1 0.00
176 34 0.12
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (174 bp):
CCACTGCAACTTCAGGGAGATAAGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATA
AGATCTCTGACTTCAATCCGCTCCACTGTAACCTCAGGGAGATAAGATCTGATCTTCGATCTGCT
CCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCCGCT
Found at i:25250754 original size:4 final size:5
Alignment explanation
Indices: 25250733--25250770 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
25250723 GTGTTCTTTA
25250733 TTATT ATTATT ATTA-T TTATT TTATT TTATT TTATT TT
1 TTATT -TTATT -TTATT TTATT TTATT TTATT TTATT TT
25250771 TCACAATTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 3 0.10
5 19 0.61
6 9 0.29
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (5 bp):
TTATT
Done.