Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 74 of 318
Found at i:25601103 original size:89 final size:90
Alignment explanation
Indices: 25600996--25601209 Score: 333
Period size: 89 Copynumber: 2.4 Consensus size: 90
25600986 ACGCGAGTCA
* * * * **
25600996 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAA-AACAGAATTTGCAAATCATCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAGAACAGAAATTGAAAAACAGAA
*
25601060 ATTGAAAATACCTCAGCGTGTCCTG
66 ATTAAAAATACCTCAGCGTGTCCTG
*
25601085 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAGGACAGAAATTGAAAAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAGAACAGAAATTGAAAAACAGAA
*
25601149 ATTAAAAATACTTCAGCGTGTCCTG
66 ATTAAAAATACCTCAGCGTGTCCTG
25601174 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
25601210 GAAACATATA
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
88 10 0.09
89 101 0.89
90 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (90 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAGAACAGAAATTGAAAAACAGAA
ATTAAAAATACCTCAGCGTGTCCTG
Found at i:25601264 original size:164 final size:163
Alignment explanation
Indices: 25601059--25601447 Score: 529
Period size: 163 Copynumber: 2.4 Consensus size: 163
25601049 GCAAATCATC
*
25601059 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * * *
25601124 GAAGGACAGAAATT-GA-AAAACAGAAATTAAAAATACTTCAGCGTGTCCTGAGGCTCAACTCAC
66 GAA-AACAGAAATTGGAGAAAACAGAAATTAAAAATACCTCAGCATGTCCTAAGGCTCAACTCAC
*
25601187 CTCTCGCAATATGAGTTGA-TTTTGAAACATATA-AAA
130 CTATCGCAATATGAGTTGATTTTTG--ACA-A-ACAAA
* * *
25601223 AATTGACAATATCTCGGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
1 AATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* *
25601286 GAAAACAGAAATTGGAGAAAACAGAAATTGAAATTACCTCAGCATGTCCTAAGGCTCAACTCACC
66 GAAAACAGAAATTGGAGAAAACAGAAATTAAAAATACCTCAGCATGTCCTAAGGCTCAACTCACC
* **
25601351 TATCGCAGTATGAGTTGATTTTTGACAAACAGT
131 TATCGCAATATGAGTTGATTTTTGACAAACAAA
* * * *
25601384 AATTGAAAATACCACAGCGTGCCCCGAGGCTCAACTCACCTATCGTAATATGAGTTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
25601448 GAACAATCCA
Statistics
Matches: 198, Mismatches: 21, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
160 1 0.01
161 62 0.31
162 13 0.07
163 63 0.32
164 59 0.30
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (163 bp):
AATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GAAAACAGAAATTGGAGAAAACAGAAATTAAAAATACCTCAGCATGTCCTAAGGCTCAACTCACC
TATCGCAATATGAGTTGATTTTTGACAAACAAA
Found at i:25601423 original size:73 final size:73
Alignment explanation
Indices: 25601304--25601529 Score: 265
Period size: 77 Copynumber: 3.0 Consensus size: 73
25601294 AAATTGGAGA
* * **
25601304 AAACAGAAATTGAAATTACCTCAGCATGTCCTAAGGCTCAACTCACCTATCGCAGTATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTATCGCA-TATGAGTTGA
25601369 TTTTTG-AC
65 TTTTTGAAC
* * * *
25601377 AAACAGTAATTGAAAATACCACAGCGTGCCCCGAGGCTCAACTCACCTATCGTAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTATCG-CATATGAGTTGA
25601442 TTTTTTGAAC
65 -TTTTTGAAC
* * * *
25601452 AATCCAAAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCCATATGAGTT
1 AA-AC-AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTATCG-CATATGAGTT
*
25601517 GATCTTTGGAAC
63 GAT-TTTTGAAC
25601529 A
1 A
25601530 GAAATAAAAA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
73 55 0.43
74 7 0.05
75 4 0.03
76 2 0.02
77 61 0.47
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (73 bp):
AAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTATCGCATATGAGTTGAT
TTTTGAAC
Found at i:25638810 original size:45 final size:42
Alignment explanation
Indices: 25638761--25638861 Score: 103
Period size: 48 Copynumber: 2.2 Consensus size: 42
25638751 GTGCATTATC
* *
25638761 CACCACCCCCTTACGAGTACAAGTCTCCTCCACCACCCCCGCCAT
1 CACCACCCCCTTACAAGTACAAG--T-CTCCACCACCCCCACCAT
25638806 CACCACCTAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
1 CACCA-C----C-CCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
25638854 CACCACCC
1 CACCACCC
25638862 AAGCATCCCT
Statistics
Matches: 48, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
42 1 0.02
43 1 0.02
45 5 0.10
46 1 0.02
47 1 0.02
48 22 0.46
49 1 0.02
50 1 0.02
51 15 0.31
ACGTcount: A:0.27, C:0.52, G:0.07, T:0.14
Consensus pattern (42 bp):
CACCACCCCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
Found at i:25638834 original size:51 final size:51
Alignment explanation
Indices: 25638701--25639496 Score: 904
Period size: 51 Copynumber: 15.9 Consensus size: 51
25638691 TACTCCCCAC
* * * * * *
25638701 CACCACCCAAGGAGCCTTACAAGTATAAGTCTCCACCACCTCCTCCACCAGT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCA-T
** * * * *
25638753 GCATTATCCACCA-CCCCCTTACGAGTACAAGTCTCCTCCACCACCCCCGCCAT
1 -CACCA-CC-CAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
*
25638806 CACCACCTAAGCACCCTTACAAGTACAAG--T-CTCCACCACCCCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
* *
25638854 CACCACCCAAGCATCCC-TATAAGTACAAGTCTCCACCTCCACCTCCACCTCCACCAT
1 CACCACCCAAGCA-CCCTTACAAGTACAAGTCT---CCTCCA---CCACCCCCACCAT
* *
25638911 CACCACCCAAGCACCCTTACACGTACAAG--T-CTCCACCAACCCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
* *
25638959 CACCACCCAAGCACCCCTACAAGTACAAGTCTCCTCCACCACCTCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
* *
25639010 CACCACCCAAGCACCCCTACAAGTATAA---T-CTCCACCACCCCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
* *
25639057 CACCACCCAAGCATCCTTACAAGTACAAG--T-CTCCACCACCACCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
*
25639105 CACCACCCAAGCACCCCTACAAGTACAAGTCTCCT---CCACCCCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
* * *
25639153 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCACCACCACCTCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
*
25639204 CACCACCCAAGCACCCCTACAAGTACAAG--T-CT---CCACCCCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
* * *
25639249 CACCACCCAAGCATCCC-TACAAGTACAAGTCTCCACCCCCACCCCCACCCT
1 CACCACCCAAGCA-CCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
* * * * *
25639300 CACCACCCAAGCACCCGTACAAGTACAAGTCTCCACCCCCGCCCCCACCCT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
* * * * *
25639351 CACCGCCCAAGCACCCCTACAAGTACAAGTCTCCACCCCCACCCCCACCCT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
* * *
25639402 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCCCCACCCCCACCCT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
*
25639453 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCCCCACCACCC
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCC
25639497 ACTCCAGTCT
Statistics
Matches: 654, Mismatches: 57, Indels: 66
0.84 0.07 0.08
Matches are distributed among these distances:
45 37 0.06
46 3 0.00
47 43 0.07
48 170 0.26
49 5 0.01
50 7 0.01
51 304 0.46
52 3 0.00
53 4 0.01
54 37 0.06
55 3 0.00
56 3 0.00
57 35 0.05
ACGTcount: A:0.29, C:0.51, G:0.07, T:0.14
Consensus pattern (51 bp):
CACCACCCAAGCACCCTTACAAGTACAAGTCTCCTCCACCACCCCCACCAT
Found at i:25638890 original size:96 final size:96
Alignment explanation
Indices: 25638788--25639498 Score: 910
Period size: 96 Copynumber: 7.2 Consensus size: 96
25638778 TACAAGTCTC
* * *
25638788 CTCCACCACCCCCGCCATCACCACCTAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCA
1 CTCCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCACCACCCCCACCA
*
25638853 TCACCACCCAAGCATCCCTATAAGTACAAGT
66 TCACCACCCAAGCATCCCTACAAGTACAAGT
* *
25638884 CTCCACCTCCACCTCCACCTCCACCATCACCACCCAAGCACCCTTACACGTACAAGTCTCCACCA
1 CTCCA---CCA----C-CC-CCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCACCA
* *
25638949 ACCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCT
57 CCCCCACCATCACCACCCAAGCATCCCTACAAGTACAAG--T
* *
25638991 CCTCCACCACCTCCACCATCACCACCCAAGCACCCCTACAAGTATAA-TCTCCACCACCCCCACC
1 -CTCCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCACCACCCCCACC
*
25639055 ATCACCACCCAAGCATCCTTACAAGTACAAGT
65 ATCACCACCCAAGCATCCCTACAAGTACAAGT
* *
25639087 CTCCACCACCACCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCTCCACCCCCACCA
1 CTCCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCACCACCCCCACCA
*
25639152 TCACCACCCAAGCATCCTTACAAGTACAAGT
66 TCACCACCCAAGCATCCCTACAAGTACAAGT
25639183 CTCCACCACCACCTCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCT---CCACCCCCA
1 CTCCACCA-C-CC-CCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCACCACCCCCA
25639245 CCATCACCACCCAAGCATCCCTACAAGTACAAGT
63 CCATCACCACCCAAGCATCCCTACAAGTACAAGT
* * *
25639279 CTCCACCCCCACCCCCACCCTCACCACCCAAGCACCCGTACAAGTACAAGTCTCCACCCCCGCCC
1 CTCCA---CCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCA---CCACCC
* * *
25639344 CCACCCTCACCGCCCAAGCACCCCTACAAGTACAAGT
60 CCACCATCACCACCCAAGCATCCCTACAAGTACAAGT
* *
25639381 CTCCACCCCCACCCCCACCCTCACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCCCCACCC
1 CTCCA---CCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCA---CCACCC
*
25639446 CCACCCTCACCACCCAAGCA-CCCTTACAAGTACAAGT
60 CCACCATCACCACCCAAGCATCCC-TACAAGTACAAGT
*
25639483 CTCCCCCACCACCCAC
1 CTCCACCACC-CCCAC
25639499 TCCAGTCTAC
Statistics
Matches: 560, Mismatches: 28, Indels: 50
0.88 0.04 0.08
Matches are distributed among these distances:
95 44 0.08
96 146 0.26
97 3 0.01
98 47 0.08
99 82 0.15
100 6 0.01
101 4 0.01
102 138 0.25
103 1 0.00
104 2 0.00
105 81 0.14
107 1 0.00
108 5 0.01
ACGTcount: A:0.29, C:0.52, G:0.06, T:0.13
Consensus pattern (96 bp):
CTCCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCACCACCCCCACCA
TCACCACCCAAGCATCCCTACAAGTACAAGT
Found at i:25638893 original size:6 final size:6
Alignment explanation
Indices: 25638884--25638908 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25638874 AAGTACAAGT
25638884 CTCCAC CTCCAC CTCCAC CTCCAC C
1 CTCCAC CTCCAC CTCCAC CTCCAC C
25638909 ATCACCACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.68, G:0.00, T:0.16
Consensus pattern (6 bp):
CTCCAC
Found at i:25639246 original size:102 final size:99
Alignment explanation
Indices: 25638776--25639496 Score: 1008
Period size: 102 Copynumber: 7.2 Consensus size: 99
25638766 CCCCCTTACG
* * * *
25638776 AGTACAAGTCTCCTCCACCACCCCCGCCATCACCACCTAAGCACCCTTACAAGTACAAGTCTCCA
1 AGTACAAGTCTCCACCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCA
*
25638841 CCACCCCCACCATCACCACCCAAGCATCCCTATA
66 CCACCCCCACCATCACCACCCAAGCATCCCTACA
* * *
25638875 AGTACAAGTCTCCACCTCCACCTCCACCTCCACCATCACCACCCAAGCACCCTTACACGTACAAG
1 AGTACAAGTCTCCA---CCA---CCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAG
* *
25638940 TCTCCACCAACCCCACCATCACCACCCAAGCACCCCTACA
60 TCTCCACCACCCCCACCATCACCACCCAAGCATCCCTACA
* * *
25638980 AGTACAAGTCTCCTCCACCACCTCCACCATCACCACCCAAGCACCCCTACAAGTATAA-TCTCCA
1 AGTACAAGTCTCCACCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCA
*
25639044 CCACCCCCACCATCACCACCCAAGCATCCTTACA
66 CCACCCCCACCATCACCACCCAAGCATCCCTACA
*
25639078 AGTACAAGTCTCCACCACCA---CCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCT
1 AGTACAAGTCTCCACCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCA
*
25639140 CCACCCCCACCATCACCACCCAAGCATCCTTACA
66 CCACCCCCACCATCACCACCCAAGCATCCCTACA
*
25639174 AGTACAAGTCTCCACCACCACCTCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCT---
1 AGTACAAGTCTCCACCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCA
25639236 CCACCCCCACCATCACCACCCAAGCATCCCTACA
66 CCACCCCCACCATCACCACCCAAGCATCCCTACA
* * *
25639270 AGTACAAGTCTCCACCCCCACCCCCACCCTCACCACCCAAGCACCCGTACAAGTACAAGTCTCCA
1 AGTACAAGTCTCCACCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCA
* * * *
25639335 CCCCCGCCCCCACCCTCACCGCCCAAGCACCCCTACA
66 ---CCACCCCCACCATCACCACCCAAGCATCCCTACA
* * *
25639372 AGTACAAGTCTCCACCCCCACCCCCACCCTCACCACCCAAGCACCCTTACAAGTACAAGTCTCCA
1 AGTACAAGTCTCCACCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCA
*
25639437 CCCCCACCCCCACCCTCACCACCCAAGCA-CCCTTACA
66 ---CCACCCCCACCATCACCACCCAAGCATCCC-TACA
*
25639474 AGTACAAGTCTCCCCCACCACCC
1 AGTACAAGTCTCCACCACCACCC
25639497 ACTCCAGTCT
Statistics
Matches: 573, Mismatches: 32, Indels: 31
0.90 0.05 0.05
Matches are distributed among these distances:
95 34 0.06
96 150 0.26
98 56 0.10
99 90 0.16
101 3 0.01
102 152 0.27
105 88 0.15
ACGTcount: A:0.29, C:0.51, G:0.07, T:0.13
Consensus pattern (99 bp):
AGTACAAGTCTCCACCACCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCA
CCACCCCCACCATCACCACCCAAGCATCCCTACA
Found at i:25642329 original size:45 final size:43
Alignment explanation
Indices: 25642273--25642409 Score: 132
Period size: 43 Copynumber: 3.1 Consensus size: 43
25642263 GCCGCAAAAA
* * *
25642273 TTAGTGGCGCTTTTTAGGAAAAAATGCCGCTAAAGATCAGGACCT
1 TTAGCGGCGCTTTTT--GAAAAAACGCCGCTAAAGAACAGGACCT
* *
25642318 TTAGCGGCGCTTTTTTAAGAAACGCCGCTAAAGAACAGGACCT
1 TTAGCGGCGCTTTTTGAAAAAACGCCGCTAAAGAACAGGACCT
* *** * * *
25642361 TTAGCGGCACTTTTCCCCAAAAACGCCGCTAACG-ACATGATCT
1 TTAGCGGCGCTTTT-TGAAAAAACGCCGCTAAAGAACAGGACCT
25642404 TTAGCG
1 TTAGCG
25642410 ATGCTTTCCC
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
43 50 0.64
44 14 0.18
45 14 0.18
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (43 bp):
TTAGCGGCGCTTTTTGAAAAAACGCCGCTAAAGAACAGGACCT
Found at i:25642406 original size:43 final size:43
Alignment explanation
Indices: 25642292--25642437 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 43
25642282 CTTTTTAGGA
* * * * ***
25642292 AAAAATGCCGCTAAAGATCAGGACCTTTAGCGGCGCTTT-TTT
1 AAAAACGCCGCTAAAGAACAGGACCTTTAGCGACACTTTCCCC
*
25642334 AAGAAACGCCGCTAAAGAACAGGACCTTTAGCGGCACTTTTCCCC
1 AA-AAACGCCGCTAAAGAACAGGACCTTTAGCGACAC-TTTCCCC
* * * **
25642379 AAAAACGCCGCTAACG-ACATGATCTTTAGCGATGCTTTCCCC
1 AAAAACGCCGCTAAAGAACAGGACCTTTAGCGACACTTTCCCC
*
25642421 AAAAACGCCACTAAAGA
1 AAAAACGCCGCTAAAGA
25642438 CCATATATAT
Statistics
Matches: 86, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
42 23 0.27
43 45 0.52
44 16 0.19
45 2 0.02
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.21
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGAACAGGACCTTTAGCGACACTTTCCCC
Found at i:25643273 original size:7 final size:7
Alignment explanation
Indices: 25643265--25643316 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
25643255 AGTTAACTCT
*
25643265 TAAACCT
1 TAAACCA
*
25643272 TAAACCC
1 TAAACCA
25643279 TAAACCA
1 TAAACCA
* * *
25643286 TATATCT
1 TAAACCA
25643293 TAAACCA
1 TAAACCA
25643300 TAAACCA
1 TAAACCA
*
25643307 TAAACTA
1 TAAACCA
25643314 TAA
1 TAA
25643317 TAATAATTAA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (7 bp):
TAAACCA
Found at i:25643543 original size:40 final size:40
Alignment explanation
Indices: 25643499--25643598 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
25643489 CCAAAAGCAT
* *
25643499 CGCTAATGCTCTGTTTTTAGCGACGTTTTTACTAAAATGC
1 CGCTATTGCTCTGTTTTTAGCGACGTTTTTACTAAAACGC
* * * *
25643539 CGCTATTGCTCTGGTTTTAGTGGCGTTTTTATTAAAACGC
1 CGCTATTGCTCTGTTTTTAGCGACGTTTTTACTAAAACGC
* *
25643579 TGCTATTGCTATGTGTTTTA
1 CGCTATTGCTCTGT-TTTTA
25643599 CAATTTTTGT
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 45 0.90
41 5 0.10
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (40 bp):
CGCTATTGCTCTGTTTTTAGCGACGTTTTTACTAAAACGC
Found at i:25643769 original size:30 final size:31
Alignment explanation
Indices: 25643746--25643803 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
25643736 GTAAAGGTAG
25643746 GTGTAGTATTACTTTTAAGTGT-AAGGAAAA
1 GTGTAGTATTACTTTTAAGTGTAAAGGAAAA
*
25643776 TTGTAGTATTACTTTTAAGTGT-AAGGAA
1 GTGTAGTATTACTTTTAAGTGTAAAGGAA
25643804 TATTTACATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.40
Consensus pattern (31 bp):
GTGTAGTATTACTTTTAAGTGTAAAGGAAAA
Found at i:25644077 original size:21 final size:21
Alignment explanation
Indices: 25644046--25644086 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
25644036 ATCGTGATTT
25644046 TAAAATTTT-AATAATTTAAA
1 TAAAATTTTAAATAATTTAAA
25644066 TAAAATTTTTAAATAATTTAA
1 TAAAA-TTTTAAATAATTTAA
25644087 TAATTATTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 4 0.21
22 10 0.53
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAAATTTTAAATAATTTAAA
Found at i:25644878 original size:16 final size:16
Alignment explanation
Indices: 25644839--25644889 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
25644829 TTCCATTTAT
25644839 TTTTTTTTATTTT-AA
1 TTTTTTTTATTTTCAA
*
25644854 --TTGTTTATTTTCAA
1 TTTTTTTTATTTTCAA
25644868 TTTTTTTTA-TTTCACA
1 TTTTTTTTATTTTCA-A
25644884 TTTTTT
1 TTTTTT
25644890 AAAATTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
13 10 0.33
14 2 0.07
15 5 0.17
16 13 0.43
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTTTTTTATTTTCAA
Found at i:25646623 original size:5 final size:5
Alignment explanation
Indices: 25646613--25646637 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
25646603 ACATTGGATG
25646613 CATCC CATCC CATCC CATCC CATCC
1 CATCC CATCC CATCC CATCC CATCC
25646638 GGTTTTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.60, G:0.00, T:0.20
Consensus pattern (5 bp):
CATCC
Found at i:25661456 original size:49 final size:49
Alignment explanation
Indices: 25661384--25661484 Score: 202
Period size: 49 Copynumber: 2.1 Consensus size: 49
25661374 GATAAGAAAG
25661384 AGAATTACGGCGACAGATTCAATGAAATGACGGAAATGCCAATTTGGTA
1 AGAATTACGGCGACAGATTCAATGAAATGACGGAAATGCCAATTTGGTA
25661433 AGAATTACGGCGACAGATTCAATGAAATGACGGAAATGCCAATTTGGTA
1 AGAATTACGGCGACAGATTCAATGAAATGACGGAAATGCCAATTTGGTA
25661482 AGA
1 AGA
25661485 CAGACAAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (49 bp):
AGAATTACGGCGACAGATTCAATGAAATGACGGAAATGCCAATTTGGTA
Found at i:25662332 original size:22 final size:23
Alignment explanation
Indices: 25662306--25662349 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
25662296 TGGGATGTTA
25662306 TTATTA-TTACTATTTTCAAATT
1 TTATTATTTACTATTTTCAAATT
* *
25662328 TTATTATTTATTATTTTTAAAT
1 TTATTATTTACTATTTTCAAAT
25662350 ATACAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (23 bp):
TTATTATTTACTATTTTCAAATT
Found at i:25665039 original size:29 final size:29
Alignment explanation
Indices: 25664959--25665077 Score: 103
Period size: 29 Copynumber: 4.1 Consensus size: 29
25664949 TTACTAGTCA
* *
25664959 GGTCTCCATACTCATTAACAACCTGGTCG
1 GGTCACCATACTCATCAACAACCTGGTCG
* * * * * *
25664988 GATCGCCATACTCATTAAAAATCTGGTTG
1 GGTCACCATACTCATCAACAACCTGGTCG
* * * *
25665017 GGTCACCATACTCGTCAACAATCTAGTCA
1 GGTCACCATACTCATCAACAACCTGGTCG
* * *
25665046 GGTCACCACACCCGTCAACAACCTGGTCG
1 GGTCACCATACTCATCAACAACCTGGTCG
25665075 GGT
1 GGT
25665078 TGCAATACCC
Statistics
Matches: 72, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (29 bp):
GGTCACCATACTCATCAACAACCTGGTCG
Found at i:25667999 original size:16 final size:16
Alignment explanation
Indices: 25667978--25668013 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
25667968 AGTTAAACCA
25667978 TTAA-TTTTCAATGGAT
1 TTAATTTTTCAAT-GAT
25667994 TTAATTTTTCAATGAT
1 TTAATTTTTCAATGAT
25668010 TTAA
1 TTAA
25668014 CAAAAAGACC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (16 bp):
TTAATTTTTCAATGAT
Found at i:25675172 original size:14 final size:14
Alignment explanation
Indices: 25675153--25675188 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
25675143 CATATCCCAG
25675153 AAGAAATGTAATTC
1 AAGAAATGTAATTC
25675167 AAGAAATGTAATTC
1 AAGAAATGTAATTC
25675181 AAGAAATG
1 AAGAAATG
25675189 CAGTTACACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.53, C:0.06, G:0.17, T:0.25
Consensus pattern (14 bp):
AAGAAATGTAATTC
Found at i:25682370 original size:44 final size:44
Alignment explanation
Indices: 25682278--25682370 Score: 100
Period size: 44 Copynumber: 2.1 Consensus size: 44
25682268 GATTAAACCG
** * * *
25682278 AAGTAACAGTACGACACATAAGGTGCCTTATTGACTCGAAGTCG
1 AAGTAACAAAACGACACATAAGGTGCCTCATCGACTCGAAGTCA
*
25682322 AAGTAACAAAACGACACTTATA-GTGCCTCATCGACTC-AAGGTCA
1 AAGTAACAAAACGACACATA-AGGTGCCTCATCGACTCGAA-GTCA
25682366 AAGTA
1 AAGTA
25682371 TCCCTAAACA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
43 2 0.05
44 38 0.93
45 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.22
Consensus pattern (44 bp):
AAGTAACAAAACGACACATAAGGTGCCTCATCGACTCGAAGTCA
Found at i:25689065 original size:18 final size:18
Alignment explanation
Indices: 25689042--25689098 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
25689032 TTGTTTATTT
25689042 TTATTCAATAACAATCAG
1 TTATTCAATAACAATCAG
* * *
25689060 TTATTCAGTATCAAACA-
1 TTATTCAATAACAATCAG
25689077 --A-TCAATAACAATCAG
1 TTATTCAATAACAATCAG
25689092 TTATTCA
1 TTATTCA
25689099 GTCCAGTAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
14 10 0.34
15 1 0.03
17 1 0.03
18 17 0.59
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (18 bp):
TTATTCAATAACAATCAG
Found at i:25689346 original size:44 final size:44
Alignment explanation
Indices: 25689273--25689356 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
25689263 TCTGATTAAA
** * *
25689273 TCGAAGTAACAGTACGACACATAAGGTGCCTTATTGACTCGAAG
1 TCGAAGTAACAAAACGACACATAAGGTGCCTCATCGACTCGAAG
*
25689317 TCGAAGTAACAAAACGACACTTATA-GTGCCTCATCGACTC
1 TCGAAGTAACAAAACGACACATA-AGGTGCCTCATCGACTC
25689357 AAGGCCAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 33 0.97
45 1 0.03
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.23
Consensus pattern (44 bp):
TCGAAGTAACAAAACGACACATAAGGTGCCTCATCGACTCGAAG
Found at i:25690253 original size:3 final size:3
Alignment explanation
Indices: 25690245--25690269 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
25690235 ATATACATAT
25690245 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
25690270 AACATAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:25693929 original size:21 final size:22
Alignment explanation
Indices: 25693903--25693946 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
25693893 AAAAAAATAT
*
25693903 TAATTTTTTATA-CTTTTAAAA
1 TAATTTTATATATCTTTTAAAA
*
25693924 TAATTTTATATATTTTTTAAAA
1 TAATTTTATATATCTTTTAAAA
25693946 T
1 T
25693947 TTTAAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TAATTTTATATATCTTTTAAAA
Found at i:25695788 original size:22 final size:20
Alignment explanation
Indices: 25695756--25695809 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
25695746 TATATTTTAA
*
25695756 AAAAATTTATAAAAAAATTCT
1 AAAAATTTATAAAAAAAGT-T
*
25695777 AAAAATTGTATAAAGAAAGTT
1 AAAAATT-TATAAAAAAAGTT
25695798 AAAAATTT-TAAA
1 AAAAATTTATAAA
25695810 TATTTCTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.13
20 1 0.03
21 15 0.50
22 10 0.33
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (20 bp):
AAAAATTTATAAAAAAAGTT
Found at i:25702640 original size:22 final size:22
Alignment explanation
Indices: 25702612--25702658 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
25702602 TATCTTTACT
25702612 CCAACCACCCCACTAAA-CAACC
1 CCAACCACCCCACTAAATC-ACC
*
25702634 CCAACCACCCTACTAAATCACC
1 CCAACCACCCCACTAAATCACC
25702656 CCA
1 CCA
25702659 CTAAACCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.38, C:0.53, G:0.00, T:0.09
Consensus pattern (22 bp):
CCAACCACCCCACTAAATCACC
Found at i:25703158 original size:33 final size:39
Alignment explanation
Indices: 25703079--25703165 Score: 105
Period size: 33 Copynumber: 2.4 Consensus size: 39
25703069 TTTAATATTG
*
25703079 TTATTATTTTCTATTATTATTACTAATACCACTATTATCA
1 TTATTA-TTACTATTATTATTACTAATACCACTATTATCA
*
25703119 TCATTATTACTATTA-TATTA-TAATA-C-CT-TT-TCA
1 TTATTATTACTATTATTATTACTAATACCACTATTATCA
25703152 TTATTATTACTATT
1 TTATTATTACTATT
25703166 GTGTTTTTAC
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
33 16 0.36
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.11
38 5 0.11
39 8 0.18
40 5 0.11
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (39 bp):
TTATTATTACTATTATTATTACTAATACCACTATTATCA
Found at i:25713396 original size:38 final size:38
Alignment explanation
Indices: 25713311--25713554 Score: 299
Period size: 38 Copynumber: 6.3 Consensus size: 38
25713301 AAACCCAAAC
* * * * *
25713311 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACAAAGCCTGCGGGA-TTT-AACCCGGAT
* * * *
25713351 ATAATACCAGCACTAGGTCTGCGGGATTTAACCCAGAT
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
*
25713389 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
*
25713427 ATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
* * * *
25713465 ATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCACAAAGCCTGCGGG-ATTTAA-CCCGGAT
*
25713505 ATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
*
25713543 ATAATTCCAGCA
1 ATAATACCAGCA
25713555 TATAGCCTAC
Statistics
Matches: 178, Mismatches: 24, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
38 116 0.65
39 13 0.07
40 49 0.28
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (38 bp):
ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
Found at i:25713506 original size:116 final size:117
Alignment explanation
Indices: 25713316--25713574 Score: 330
Period size: 116 Copynumber: 2.2 Consensus size: 117
25713306 CAAACATAAC
* * * *
25713316 ACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGTCTGCGGGATTTA
1 ACCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTAAGCCTGCGGGATTTA
*
25713381 ACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT-ATT
66 ACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATT
* * * *
25713432 ACCAGCACAAAGCCTGCGGGA-TTT-AACCCGGATATAATTCCAGCA-TATAGCCTGCGGGTCTT
1 ACCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTA-AGCCTGCGGG-ATT
* *
25713494 TAAGCCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATT
64 TAA-CCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATT
* * *
25713549 -CCAGCATATAGCCTACGGGTCTTTAA
1 ACCAGCACAAAGCCTACGGGACTTTAA
25713575 GCTCGGATAC
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
113 2 0.02
114 26 0.21
115 8 0.07
116 79 0.65
117 6 0.05
118 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (117 bp):
ACCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTAAGCCTGCGGGATTTA
ACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATT
Found at i:25713594 original size:40 final size:40
Alignment explanation
Indices: 25713404--25713594 Score: 168
Period size: 38 Copynumber: 4.9 Consensus size: 40
25713394 ACCAGCACGA
* * * *
25713404 AGCCTGCGGG-ATTTAA-CCCGGATATATTAC-CAGCACAA
1 AGCCTGCGGGTCTTTAAGCCCGGATATAAT-CTCAGCATAT
*
25713442 AGCCTGCGGG-ATTTAA-CCCGGATATAAT-TCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATATAATCT-CAGCATAT
* * *
25713480 AGCCTGCGGGTCTTTAAGCCCGGATATATTAC-CAGCACAA
1 AGCCTGCGGGTCTTTAAGCCCGGATATAAT-CTCAGCATAT
*
25713520 AGCCTGCGGG-ATTTAA-CCCGGATATAAT-TCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATATAATCT-CAGCATAT
* * *
25713558 AGCCTACGGGTCTTTAAGCTCGGATACAATCTCAGCA
1 AGCCTGCGGGTCTTTAAGCCCGGATATAATCTCAGCA
25713595 CAATTTATTT
Statistics
Matches: 127, Mismatches: 15, Indels: 20
0.78 0.09 0.12
Matches are distributed among these distances:
38 69 0.54
39 15 0.12
40 42 0.33
41 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATATAATCTCAGCATAT
Found at i:25713594 original size:78 final size:78
Alignment explanation
Indices: 25713326--25713597 Score: 345
Period size: 78 Copynumber: 3.5 Consensus size: 78
25713316 ACCAGCACGA
* * * * * * * *
25713326 AGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGTCTGCGGGATTTAACCCAGATAT
1 AGCCTACGGGTCTTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
* *
25713391 AATACCAGCACGA-
66 AATTCCAGCA-TAT
* * *
25713404 AGCCTGCGGG-ATTTAA-CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
1 AGCCTACGGGTCTTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
25713467 AATTCCAGCATAT
66 AATTCCAGCATAT
* *
25713480 AGCCTGCGGGTCTTTAAGCCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
1 AGCCTACGGGTCTTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
25713545 AATTCCAGCATAT
66 AATTCCAGCATAT
* *
25713558 AGCCTACGGGTCTTTAAGCTCGGATACAAT-CTCAGCACAA
1 AGCCTACGGGTCTTTAAGCCCGGATATAATAC-CAGCACAA
25713598 TTTATTTTAT
Statistics
Matches: 174, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
75 1 0.01
76 59 0.34
77 11 0.06
78 103 0.59
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (78 bp):
AGCCTACGGGTCTTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
AATTCCAGCATAT
Found at i:25717551 original size:206 final size:206
Alignment explanation
Indices: 25717193--25718070 Score: 1551
Period size: 206 Copynumber: 4.3 Consensus size: 206
25717183 GATCTGGCTA
*
25717193 AAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
* *
25717257 TTGGCTTTCGCGTGCTTAAGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTTAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* *
25717322 ACAAGTCGAAGTCTGGTATCTCCATTTCGACGGAGAGTAGATACATAGTAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGTAGATACATAGCAGATCTGGCCTTCAGA
25717387 TGTTTATACTG
196 TGTTTATACTG
25717398 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
*
25717463 TTGCCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* *
25717528 ACAAGTCGAAGTCTGGCATCTCCATTTCAACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGTAGATACATAGCAGATCTGGCCTTCAGA
25717593 TGTTTATACTG
196 TGTTTATACTG
25717604 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
* *
25717669 TTGGCTTTCGTGTGCTTACGTTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
*
25717734 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGATAGTAGATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGTAGATACATAGCAGATCTGGCCTTCAGA
25717799 TGTTTATACTG
196 TGTTTATACTG
* *
25717810 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATTGAAGATATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
* *
25717875 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATTTCTGTATTGTTAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * *
25717940 ACAAGTCGAAGTCTGGCATCTCCATTCCGACAGAGAGTATATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGTAGATACATAGCAGATCTGGCCTTCAGA
*
25718005 TGTTTATACCG
196 TGTTTATACTG
** *
25718016 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAATAAACAAATCGAAGA
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGA
25718071 AGCAGATTTG
Statistics
Matches: 643, Mismatches: 29, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
205 4 0.01
206 639 0.99
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (206 bp):
AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGTAGATACATAGCAGATCTGGCCTTCAGA
TGTTTATACTG
Found at i:25718467 original size:15 final size:16
Alignment explanation
Indices: 25718441--25718470 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
25718431 TTTGCCCGGG
25718441 CTAAAAAGCCCAACAT
1 CTAAAAAGCCCAACAT
25718457 CTAAAAA-CCCAACA
1 CTAAAAAGCCCAACA
25718471 GCCCAATCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.33, G:0.03, T:0.10
Consensus pattern (16 bp):
CTAAAAAGCCCAACAT
Found at i:25718564 original size:13 final size:13
Alignment explanation
Indices: 25718546--25718581 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
25718536 TCTTTACTCC
25718546 AACCACCCCACTA
1 AACCACCCCACTA
25718559 AACCACCCCACTA
1 AACCACCCCACTA
*
25718572 AACCATCCCA
1 AACCACCCCA
25718582 ACCACTCCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.39, C:0.53, G:0.00, T:0.08
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:25718694 original size:16 final size:15
Alignment explanation
Indices: 25718663--25718700 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
25718653 AAGGGATTTT
25718663 TTTTTGG-AAGGGAG
1 TTTTTGGAAAGGGAG
*
25718677 TTTTTGGAAAGGCTAG
1 TTTTTGGAAAGG-GAG
25718693 TTTTTGGA
1 TTTTTGGA
25718701 GATTAATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.21, C:0.03, G:0.34, T:0.42
Consensus pattern (15 bp):
TTTTTGGAAAGGGAG
Found at i:25719071 original size:33 final size:39
Alignment explanation
Indices: 25718992--25719078 Score: 105
Period size: 33 Copynumber: 2.4 Consensus size: 39
25718982 TTTAATATTG
*
25718992 TTATTATTTTCTATTATTATTACTAATACCACTATTATCA
1 TTATTA-TTACTATTATTATTACTAATACCACTATTATCA
*
25719032 TCATTATTACTATTA-TATTA-TAATA-C-CT-TT-TCA
1 TTATTATTACTATTATTATTACTAATACCACTATTATCA
25719065 TTATTATTACTATT
1 TTATTATTACTATT
25719079 GTGTTTTTAC
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
33 16 0.36
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.11
38 5 0.11
39 8 0.18
40 5 0.11
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (39 bp):
TTATTATTACTATTATTATTACTAATACCACTATTATCA
Found at i:25721066 original size:19 final size:19
Alignment explanation
Indices: 25721018--25721075 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
25721008 AATCTGTTAA
*
25721018 TAAAAATAAATAAATATTAGT
1 TAAAAA-AAATAAAAATT-GT
**
25721039 TTTAAAAAATAAAAATTGT
1 TAAAAAAAATAAAAATTGT
*
25721058 TAAAAAAAACAAAAATTG
1 TAAAAAAAATAAAAATTG
25721076 ATGTTACACT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 17 0.55
20 10 0.32
21 4 0.13
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (19 bp):
TAAAAAAAATAAAAATTGT
Found at i:25721272 original size:17 final size:17
Alignment explanation
Indices: 25721250--25721282 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
25721240 TAAAAGCTTT
25721250 TGACTAAAATCAAAATG
1 TGACTAAAATCAAAATG
25721267 TGACTAAAATCAAAAT
1 TGACTAAAATCAAAAT
25721283 AATAGTAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
TGACTAAAATCAAAATG
Found at i:25730512 original size:44 final size:44
Alignment explanation
Indices: 25730431--25730521 Score: 119
Period size: 44 Copynumber: 2.1 Consensus size: 44
25730421 AATTCTGTTT
* * * *
25730431 TTAGTTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTCCCACTTAAAATCTGATCAGTGGAGATTATTTTAATA
** *
25730475 TTAGTTTTGCACTTAAAATTTGATCAGTGGAGATTATTTTAATA
1 TTAGTTTCCCACTTAAAATCTGATCAGTGGAGATTATTTTAATA
25730519 TTA
1 TTA
25730522 TTTGACGTAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.30, C:0.10, G:0.14, T:0.46
Consensus pattern (44 bp):
TTAGTTTCCCACTTAAAATCTGATCAGTGGAGATTATTTTAATA
Found at i:25731273 original size:21 final size:20
Alignment explanation
Indices: 25731251--25731288 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25731241 GCATAGTATA
25731251 AAAAAATAATTTTAAAATAT
1 AAAAAATAATTTTAAAATAT
* *
25731271 AAAATATTATTTTAAAAT
1 AAAAAATAATTTTAAAAT
25731289 TTATTTCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAAAATAATTTTAAAATAT
Found at i:25732264 original size:10 final size:10
Alignment explanation
Indices: 25732249--25732273 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
25732239 AAGCAAGGAA
25732249 AGAAAGTAAC
1 AGAAAGTAAC
25732259 AGAAAGTAAC
1 AGAAAGTAAC
25732269 AGAAA
1 AGAAA
25732274 AATAACTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.08, G:0.20, T:0.08
Consensus pattern (10 bp):
AGAAAGTAAC
Found at i:25736592 original size:10 final size:10
Alignment explanation
Indices: 25736577--25736601 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
25736567 AAGCAAGGAA
25736577 AGAAAGTAAC
1 AGAAAGTAAC
25736587 AGAAAGTAAC
1 AGAAAGTAAC
25736597 AGAAA
1 AGAAA
25736602 AATAACTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.08, G:0.20, T:0.08
Consensus pattern (10 bp):
AGAAAGTAAC
Found at i:25752269 original size:21 final size:21
Alignment explanation
Indices: 25752243--25752283 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
25752233 ATCTGCTCAA
* *
25752243 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
25752264 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
25752284 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:25765554 original size:28 final size:28
Alignment explanation
Indices: 25765523--25765578 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
25765513 AATATGTAGT
* *
25765523 AAAATTATATTTTAA-TTTTAAAATAATA
1 AAAATT-TAATTTAATTTTTAAAAAAATA
25765551 AAAATTTAATTTAATTTTTAAAAAAATA
1 AAAATTTAATTTAATTTTTAAAAAAATA
25765579 TAAAGATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
AAAATTTAATTTAATTTTTAAAAAAATA
Found at i:25768341 original size:17 final size:19
Alignment explanation
Indices: 25768302--25768343 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
25768292 CTGGTATTTT
*
25768302 AAAT-ATTATAAAAATAAG
1 AAATAATTATAAAAAAAAG
25768320 AAATAATTA-AAAAAAAAG
1 AAATAATTATAAAAAAAAG
25768338 -AATAAT
1 AAATAAT
25768344 AGATAAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 6 0.27
18 12 0.55
19 4 0.18
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (19 bp):
AAATAATTATAAAAAAAAG
Found at i:25768901 original size:25 final size:24
Alignment explanation
Indices: 25768869--25768916 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
25768859 TGTTAAATAA
25768869 GTTAAATATGCGGTTTTTTTAATTG
1 GTTAAATATG-GGTTTTTTTAATTG
**
25768894 GTTAAATATGTTTTTTTTTAATT
1 GTTAAATATGGGTTTTTTTAATT
25768917 TAATAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (24 bp):
GTTAAATATGGGTTTTTTTAATTG
Found at i:25769929 original size:28 final size:30
Alignment explanation
Indices: 25769883--25769940 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
25769873 AACTTTTAAA
*
25769883 TTATTTTCACTATCGT-AAATATGAAAATT
1 TTATTTTCACTATCATAAAATATGAAAATT
* *
25769912 TTATTTTTA-TATCATAAAATATTAAAATT
1 TTATTTTCACTATCATAAAATATGAAAATT
25769941 AATTATATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.48
Consensus pattern (30 bp):
TTATTTTCACTATCATAAAATATGAAAATT
Found at i:25773528 original size:6 final size:6
Alignment explanation
Indices: 25773519--25773552 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
25773509 CGGCAATGAC
*
25773519 GAAGAT GAAGAT GAAGAT GAAGAT GAAGTT GAAG
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAG
25773553 GGGGTGAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.47, C:0.00, G:0.35, T:0.18
Consensus pattern (6 bp):
GAAGAT
Found at i:25776944 original size:3 final size:3
Alignment explanation
Indices: 25776936--25776980 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
25776926 TCAGTATCCC
25776936 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
25776981 GGATGTGATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:25779264 original size:3 final size:3
Alignment explanation
Indices: 25779256--25779283 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
25779246 ACCAAAATAT
25779256 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
25779284 GAAAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:25780275 original size:21 final size:19
Alignment explanation
Indices: 25780223--25780288 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 19
25780213 TTTTTAAATA
* *
25780223 TTTAAATTTTTTTTTATATT
1 TTTAAAGTTTTTTGTA-ATT
*
25780243 TTTAAAGATTTTTGTAATT
1 TTTAAAGTTTTTTGTAATT
* *
25780262 TTTATGAAGTTTTTTGAAAAT
1 TTTA--AAGTTTTTTGTAATT
25780283 TTTAAA
1 TTTAAA
25780289 ATAATATATG
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
19 9 0.24
20 13 0.34
21 16 0.42
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (19 bp):
TTTAAAGTTTTTTGTAATT
Found at i:25782544 original size:8 final size:8
Alignment explanation
Indices: 25782531--25782587 Score: 60
Period size: 8 Copynumber: 7.1 Consensus size: 8
25782521 TTTAATTATA
25782531 TTTAAAAT
1 TTTAAAAT
*
25782539 TTTAAAAA
1 TTTAAAAT
*
25782547 TTCAAAAT
1 TTTAAAAT
*
25782555 TTTAAAAA
1 TTTAAAAT
*
25782563 TTCAAAAT
1 TTTAAAAT
*
25782571 TTTAAAAA
1 TTTAAAAT
*
25782579 TTCAAAAT
1 TTTAAAAT
25782587 T
1 T
25782588 CAAAATTCAA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.40
Consensus pattern (8 bp):
TTTAAAAT
Found at i:25782553 original size:7 final size:7
Alignment explanation
Indices: 25782543--25782600 Score: 62
Period size: 7 Copynumber: 7.7 Consensus size: 7
25782533 TAAAATTTTA
25782543 AAAATTC
1 AAAATTC
*
25782550 AAAATTTTA
1 AAAA--TTC
25782559 AAAATTC
1 AAAATTC
*
25782566 AAAATTTTA
1 AAAA--TTC
25782575 AAAATTC
1 AAAATTC
25782582 AAAATTC
1 AAAATTC
25782589 AAAATTC
1 AAAATTC
25782596 AAAAT
1 AAAAT
25782601 ATATTTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
7 31 0.72
9 12 0.28
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.33
Consensus pattern (7 bp):
AAAATTC
Found at i:25782555 original size:16 final size:16
Alignment explanation
Indices: 25782534--25782600 Score: 111
Period size: 16 Copynumber: 4.3 Consensus size: 16
25782524 AATTATATTT
25782534 AAAATTTTAAAAATTC
1 AAAATTTTAAAAATTC
25782550 AAAATTTTAAAAATTC
1 AAAATTTTAAAAATTC
25782566 AAAATTTTAAAAATTC
1 AAAATTTTAAAAATTC
*
25782582 AAAA--TTCAAAATTC
1 AAAATTTTAAAAATTC
25782596 AAAAT
1 AAAAT
25782601 ATATTTTTTA
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
14 13 0.27
16 36 0.73
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAATTTTAAAAATTC
Found at i:25788207 original size:16 final size:16
Alignment explanation
Indices: 25788186--25788224 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
25788176 AGATTCGACT
25788186 CATTTAATTTATGAAC
1 CATTTAATTTATGAAC
*
25788202 CATTTAATTTATGAAT
1 CATTTAATTTATGAAC
25788218 CATTTAA
1 CATTTAA
25788225 CTCTAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.46
Consensus pattern (16 bp):
CATTTAATTTATGAAC
Found at i:25788646 original size:14 final size:14
Alignment explanation
Indices: 25788629--25788665 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
25788619 AAAAAAAAAG
*
25788629 AGCAAAAAAATTCC
1 AGCAAAAAAAATCC
25788643 AGCAAAAAAAATCC
1 AGCAAAAAAAATCC
25788657 A--AAAAAAAA
1 AGCAAAAAAAA
25788666 AAAACATTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 8 0.36
14 14 0.64
ACGTcount: A:0.70, C:0.16, G:0.05, T:0.08
Consensus pattern (14 bp):
AGCAAAAAAAATCC
Found at i:25788916 original size:19 final size:19
Alignment explanation
Indices: 25788879--25788918 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
25788869 TGTTTTCATA
* *
25788879 TTTTCTTTCCTTGGTTTTT
1 TTTTCTTTCCTTAGATTTT
*
25788898 TTTTCTTTCTTTAGATTTT
1 TTTTCTTTCCTTAGATTTT
25788917 TT
1 TT
25788919 ATTTTATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.75
Consensus pattern (19 bp):
TTTTCTTTCCTTAGATTTT
Found at i:25792496 original size:23 final size:23
Alignment explanation
Indices: 25792470--25792515 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
25792460 TTGCATTTTA
25792470 CACAATTTAATCAATTCATTATT
1 CACAATTTAATCAATTCATTATT
*
25792493 CACAATTTAATCAATTTATTATT
1 CACAATTTAATCAATTCATTATT
25792516 ATTCAACAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (23 bp):
CACAATTTAATCAATTCATTATT
Found at i:25795930 original size:23 final size:23
Alignment explanation
Indices: 25795903--25795946 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
25795893 TTCGCCCTCT
25795903 ACTCCTACCAAACATCAGTCAAA
1 ACTCCTACCAAACATCAGTCAAA
*
25795926 ACTCCTACCGAACATCAGTCA
1 ACTCCTACCAAACATCAGTCA
25795947 GGCAACACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.07, T:0.18
Consensus pattern (23 bp):
ACTCCTACCAAACATCAGTCAAA
Found at i:25797340 original size:44 final size:44
Alignment explanation
Indices: 25797279--25797693 Score: 254
Period size: 44 Copynumber: 9.4 Consensus size: 44
25797269 CTCTAAGCAG
* * *
25797279 CAGTGGAGCAGGTCGAAGCCATAATTCTTATCTCCTTGAAGTTT
1 CAGTGGAGTAGATCGAAGCCACAATTCTTATCTCCTTGAAGTTT
* ** * * **
25797323 CAGCGGAGTAGATCGAAGTTACAAATCTCT-TCTACC-TGAAATGA
1 CAGTGGAGTAGATCGAAGCCACAATTCT-TATCT-CCTTGAAGTTT
* ** * *
25797367 CATTGGAGCGGCTCGAAGCCACAATTCTTATCTACTTGAAGTTT
1 CAGTGGAGTAGATCGAAGCCACAATTCTTATCTCCTTGAAGTTT
* * * **
25797411 CAGTGGAGTAGATCGAAGCTACAAATCTCT-TCTCCTTGAAATGA
1 CAGTGGAGTAGATCGAAGCCACAATTCT-TATCTCCTTGAAGTTT
* * * *
25797455 CATTGGAGCAGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTC
1 CAGTGGAGTAGATCGAAGCCACAATTCTTATCTCCTTGAAGTTT
* * * * * **
25797499 CAGCGGAGTAGATCGAAGCTACAAATCTCT-TCTCCCTGAAATGG
1 CAGTGGAGTAGATCGAAGCCACAATTCT-TATCTCCTTGAAGTTT
* * ** * *
25797543 CATTAGAGCGGCTCGAAGCCACAATTCTTATCTTCTTGAAG-TT
1 CAGTGGAGTAGATCGAAGCCACAATTCTTATCTCCTTGAAGTTT
* * * * **
25797586 CTAGCGGAGTAGATCGAAGCTACAAATCTCTT-T-TCCCTGAAATGG
1 C-AGTGGAGTAGATCGAAGCCAC-AAT-TCTTATCTCCTTGAAGTTT
* * *
25797631 CATTGGAG-ATGTTCGAAGCCACAATTATTATCTCCTTGAAG-TT
1 CAGTGGAGTA-GATCGAAGCCACAATTCTTATCTCCTTGAAGTTT
* *
25797674 CTAGTAGAGTATATCGAAGC
1 C-AGTGGAGTAGATCGAAGC
25797694 TATAAATCTC
Statistics
Matches: 266, Mismatches: 88, Indels: 34
0.69 0.23 0.09
Matches are distributed among these distances:
42 3 0.01
43 11 0.04
44 237 0.89
45 11 0.04
46 4 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (44 bp):
CAGTGGAGTAGATCGAAGCCACAATTCTTATCTCCTTGAAGTTT
Found at i:25797393 original size:88 final size:88
Alignment explanation
Indices: 25797282--25797760 Score: 662
Period size: 88 Copynumber: 5.5 Consensus size: 88
25797272 TAAGCAGCAG
* *
25797282 TGGAGCAGG-TCGAAGCCATAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGTTACA
1 TGGAGC-GGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACA
*
25797346 AATCTCTTCTACCTGAAATGACAT
65 AATCTCTTCTCCCTGAAATGACAT
* *
25797370 TGGAGCGGCTCGAAGCCACAATTCTTATCTACTTGAAGTTTCAGTGGAGTAGATCGAAGCTACAA
1 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAA
*
25797435 ATCTCTTCTCCTTGAAATGACAT
66 ATCTCTTCTCCCTGAAATGACAT
* *
25797458 TGGAGCAGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAA
1 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAA
*
25797523 ATCTCTTCTCCCTGAAATGGCAT
66 ATCTCTTCTCCCTGAAATGACAT
* *
25797546 TAGAGCGGCTCGAAGCCACAATTCTTATCTTCTTGAAG-TTCTAGCGGAGTAGATCGAAGCTACA
1 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTTC-AGCGGAGTAGATCGAAGCTACA
* *
25797610 AATCTCTTTTCCCTGAAATGGCAT
65 AATCTCTTCTCCCTGAAATGACAT
** * * ** * *
25797634 TGGAGATGTTCGAAGCCACAATTATTATCTCCTTGAAG-TTCTAGTAGAGTATATCGAAGCTATA
1 TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTTC-AGCGGAGTAGATCGAAGCTACA
25797698 AATCTCTTCTCCCTGAAATGACAT
65 AATCTCTTCTCCCTGAAATGACAT
* * * *
25797722 TGGAGC-GATTGAAGACATCAA-TCTTATCTCCCTGAAGTT
1 TGGAGCGGCTCGAAGCCA-CAATTCTTATCTCCTTGAAGTT
25797761 GTAGTGGGGC
Statistics
Matches: 352, Mismatches: 35, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
87 26 0.07
88 326 0.93
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (88 bp):
TGGAGCGGCTCGAAGCCACAATTCTTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAA
ATCTCTTCTCCCTGAAATGACAT
Found at i:25797862 original size:44 final size:43
Alignment explanation
Indices: 25797795--25798039 Score: 158
Period size: 44 Copynumber: 5.5 Consensus size: 43
25797785 AATCACAAAC
* * *
25797795 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
1 CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAA-T
* * *
25797839 CTTATCTTCCTGAAGTTGTAGTGGAGCAGACTGAAGATTGCCAAT
1 CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAG-TT-ACAAT
* ** * *
25797884 CTTATC-TCTCTGAAGTTGCAGTAGG-GCAGATGGAAGCCATTAAC
1 CTTATCTTC-CTGAAGTTGCAGT-GGAGCAGATTGAAGTTA-CAAT
* * ** * *
25797928 CTTATC-TCTCTGAAGTTGTAGTAGAATAGGTTGAAATTACAAGT
1 CTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTGAAGTTACAA-T
** *
25797972 CTTATCCCCCTGAAGTTGCAGTGG-GACAGATTGAAGATAGCAAAT
1 CTTATCTTCCTGAAGTTGCAGTGGAG-CAGATTGAAGTTA-C-AAT
*
25798017 CTTAT-TTCCCTGAAGTTGTAGTG
1 CTTATCTT-CCTGAAGTTGCAGTG
25798040 TAACCGATTA
Statistics
Matches: 153, Mismatches: 36, Indels: 23
0.72 0.17 0.11
Matches are distributed among these distances:
43 3 0.02
44 91 0.59
45 52 0.34
46 7 0.05
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAT
Found at i:25797968 original size:133 final size:133
Alignment explanation
Indices: 25797792--25798034 Score: 335
Period size: 133 Copynumber: 1.8 Consensus size: 133
25797782 ACAAATCACA
* * * **
25797792 AACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTTCCTGAAGTTG
1 AACCTTATCTCCCTAAAGTTGCAGTAGAACAGGTTGAAATTACAAGTCTTATCCCCCTGAAGTTG
* * * *
25797857 TAGT-GGAGCAGACTGAAGATTGCCAATCTTATCTCTCTGAAGTTGCAGTAGGGCAGATGGAAGC
66 CAGTGGGA-CAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTAGGGCAGATGGAAGC
25797921 CATT
130 CATT
* * * *
25797925 AACCTTATCTCTCTGAAGTTGTAGTAGAATAGGTTGAAATTACAAGTCTTATCCCCCTGAAGTTG
1 AACCTTATCTCCCTAAAGTTGCAGTAGAACAGGTTGAAATTACAAGTCTTATCCCCCTGAAGTTG
* *
25797990 CAGTGGGACAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTG
66 CAGTGGGACAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTG
25798035 TAGTGTAACC
Statistics
Matches: 94, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
133 91 0.97
134 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (133 bp):
AACCTTATCTCCCTAAAGTTGCAGTAGAACAGGTTGAAATTACAAGTCTTATCCCCCTGAAGTTG
CAGTGGGACAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTAGGGCAGATGGAAGCC
ATT
Found at i:25798021 original size:89 final size:89
Alignment explanation
Indices: 25797795--25798038 Score: 228
Period size: 89 Copynumber: 2.7 Consensus size: 89
25797785 AATCACAAAC
* * * *
25797795 CTTATCTCCCTAAAGTTGCAGT-GGAGCAGGTTGAAGTTACAAGTCTTATCT-TCCTGAAGTTGT
1 CTTATCTCCCTGAAGTTGCAGTGGGA-CAGATTGAAGATACAAATCTTATCTCT-CTGAAGTTGT
* * *
25797858 AGTGGAGCAGACTGAAGATTGCCAAT
64 AGTAGAACAGACTGAAGATTGACAAT
* * ** ** *
25797884 CTTATCTCTCTGAAGTTGCAGTAGGG-CAGATGGAAGCCATTAACCTTATCTCTCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGT-GGGACAGATTGAAGATACAAATCTTATCTCTCTGAAGTTGTA
* **
25797948 GTAGAATAGGTTGAA-ATT-ACAAGT
65 GTAGAACAGACTGAAGATTGACAA-T
* * *
25797972 CTTATCCCCCTGAAGTTGCAGTGGGACAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGGACAGATTGAAGATA-CAAATCTTATCTCTCTGAAGTTGTA
25798037 GT
65 GT
25798039 GTAACCGATT
Statistics
Matches: 123, Mismatches: 26, Indels: 12
0.76 0.16 0.07
Matches are distributed among these distances:
87 6 0.05
88 34 0.28
89 80 0.65
90 1 0.01
91 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (89 bp):
CTTATCTCCCTGAAGTTGCAGTGGGACAGATTGAAGATACAAATCTTATCTCTCTGAAGTTGTAG
TAGAACAGACTGAAGATTGACAAT
Found at i:25798234 original size:44 final size:44
Alignment explanation
Indices: 25798115--25798275 Score: 148
Period size: 44 Copynumber: 3.6 Consensus size: 44
25798105 TATCATGGCG
* * * ** *
25798115 AATCTTATCTCCCTTAAGTTGCAGTGGAGTAGA-TGAAAGCCATT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTG-AAGATATA
* ** **
25798159 AATCTTATCTCTCTGAAGTTGTAGTAAAGCAGGTTGAA-AT-TA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATATA
*
25798201 CAAGTCTTATCTCCCTGTAGTTGTAGTGGAGCAGACTGAAGATAGTA
1 -AA-TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATA-TA
*
25798248 AATCTTATTTCCCTGAAGTTGTAGTGGA
1 AATCTTATCTCCCTGAAGTTGTAGTGGA
25798276 ACAAATTGAA
Statistics
Matches: 93, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 58 0.62
45 28 0.30
46 2 0.02
47 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.34
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATATA
Found at i:25798285 original size:89 final size:88
Alignment explanation
Indices: 25798117--25798285 Score: 191
Period size: 89 Copynumber: 1.9 Consensus size: 88
25798107 TCATGGCGAA
* * * *
25798117 TCTTATCTCCCTTAAGTTGCAGTGGAGTAGATGAAAGCCATTAATCTTATCTCTCTGAAGTTGTA
1 TCTTATCTCCCTTAAGTTGCAGTGGAGCAGATGAAAGACATAAATCTTATCTCCCTGAAGTTGTA
**
25798182 GTAAAGCAGGTTGAAATTACAAG
66 GTAAAGCAAATTGAAATTACAAG
* * *
25798205 TCTTATCTCCCTGT-AGTTGTAGTGGAGCAGACTG-AAGATAGTAAATCTTATTTCCCTGAAGTT
1 TCTTATCTCCCT-TAAGTTGCAGTGGAGCAGA-TGAAAGACA-TAAATCTTATCTCCCTGAAGTT
*
25798268 GTAGTGGAA-CAAATTGAA
63 GTAGT-AAAGCAAATTGAA
25798286 GCTATAATTA
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
88 31 0.46
89 34 0.51
90 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (88 bp):
TCTTATCTCCCTTAAGTTGCAGTGGAGCAGATGAAAGACATAAATCTTATCTCCCTGAAGTTGTA
GTAAAGCAAATTGAAATTACAAG
Found at i:25799841 original size:16 final size:16
Alignment explanation
Indices: 25799822--25799852 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25799812 CTTCTTCACT
25799822 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
25799838 TACTTACTTACTTAA
1 TACTCACTTACTTAA
25799853 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:25799858 original size:20 final size:20
Alignment explanation
Indices: 25799819--25799858 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
25799809 AAACTTCTTC
* *
25799819 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
25799839 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
25799859 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:25799966 original size:23 final size:24
Alignment explanation
Indices: 25799931--25799975 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
25799921 TTTGCTCTTC
25799931 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTTGTCTTACCTTTT
25799955 TAGCAT-AACTTGTCTTACCTT
1 TAGCATGAACTTGTCTTACCTT
25799976 ACCTTACCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (24 bp):
TAGCATGAACTTGTCTTACCTTTT
Found at i:25800230 original size:55 final size:53
Alignment explanation
Indices: 25800103--25800298 Score: 216
Period size: 55 Copynumber: 3.6 Consensus size: 53
25800093 CTTACCCTTT
* * *
25800103 CCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTAT-GAACTCATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTA-CCTTTCCTTATAGAACTTATCAATG
* *
25800156 CCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTACCTTT-CCTTATAG-AACTTATCAATG
* * * * *
25800211 CCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTAGA-AACCTTACCAATTG
1 CCATGCCTTGACATGGTCTTACATG-GTACCTTTCCTTATAGAA-CTTATCAA-TG
*
25800266 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGCCTTGACATGGTCTTACATGGTA-CCTT
25800299 AAACCTTAAT
Statistics
Matches: 120, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
52 4 0.03
53 33 0.28
54 9 0.08
55 69 0.57
56 5 0.04
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CCATGCCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTTATCAATG
Found at i:25803250 original size:26 final size:27
Alignment explanation
Indices: 25803166--25803252 Score: 92
Period size: 26 Copynumber: 3.3 Consensus size: 27
25803156 TTAATTTGTG
* *
25803166 TATTA-TTTATTT-TAATTTATTTAACA
1 TATTATTTTATTTCAAATTTATTT-ATA
*
25803192 TATTA-TTTATTTGAAATTTACTTTATA
1 TATTATTTTATTTCAAATTTA-TTTATA
25803219 TATTATTTTATTTCAAATTT-TTTATA
1 TATTATTTTATTTCAAATTTATTTATA
*
25803245 TTTTATTT
1 TATTATTT
25803253 ATGTTAAATC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
26 25 0.46
27 13 0.24
28 16 0.30
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (27 bp):
TATTATTTTATTTCAAATTTATTTATA
Found at i:25804594 original size:26 final size:26
Alignment explanation
Indices: 25804565--25804620 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
25804555 TTCATATTAT
*
25804565 GAATCTTTA-TCAAATAAAGAAAATGA
1 GAATCTATATTCAAA-AAAGAAAATGA
*
25804591 GAAT-TATATTCAAAAAAGAAAGTGA
1 GAATCTATATTCAAAAAAGAAAATGA
25804616 GAATC
1 GAATC
25804621 AAATCAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (26 bp):
GAATCTATATTCAAAAAAGAAAATGA
Found at i:25804632 original size:25 final size:25
Alignment explanation
Indices: 25804573--25804632 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
25804563 ATGAATCTTT
*
25804573 ATCAAATAAAGAAAATGAGAATTATA
1 ATCAAA-AAAGAAAATGAGAATCATA
* *
25804599 TTCAAAAAAGAAAGTGAGAATCA-A
1 ATCAAAAAAGAAAATGAGAATCATA
25804623 ATCAACAAAA
1 ATCAA-AAAA
25804633 TTAAAAGACA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 5 0.17
25 19 0.66
26 5 0.17
ACGTcount: A:0.62, C:0.08, G:0.12, T:0.18
Consensus pattern (25 bp):
ATCAAAAAAGAAAATGAGAATCATA
Found at i:25806138 original size:20 final size:20
Alignment explanation
Indices: 25806113--25806150 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25806103 TATTATATAA
* *
25806113 AATATATTTTTTATATTAGC
1 AATATAATTTTTAAATTAGC
25806133 AATATAATTTTTAAATTA
1 AATATAATTTTTAAATTA
25806151 TTATTTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (20 bp):
AATATAATTTTTAAATTAGC
Found at i:25816296 original size:14 final size:11
Alignment explanation
Indices: 25816265--25816289 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25816255 GTTATTTTAA
25816265 TTTTTCTTTTT
1 TTTTTCTTTTT
25816276 TTTTTCTTTTT
1 TTTTTCTTTTT
25816287 TTT
1 TTT
25816290 CCGTTCTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:25820090 original size:20 final size:20
Alignment explanation
Indices: 25820058--25820095 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
25820048 TGATGGGGAG
*
25820058 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
25820078 CAAGAA-ATACAAGCTGGA
1 CAAGAATAT-CAAGCTGGA
25820096 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:25822057 original size:46 final size:46
Alignment explanation
Indices: 25822003--25822269 Score: 347
Period size: 46 Copynumber: 5.8 Consensus size: 46
25821993 TTCTGATAGA
* *
25822003 AAATGTGTAAGACCATGGTTAAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG
* *
25822049 AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG
** *
25822095 AAACATGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG
* **
25822141 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAC-ATG
** * *
25822188 AAATGAATAAGACCATGGTTGAATGATACCATGGCAACATGACA-G
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG
* * * *
25822233 AAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 -AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
25822270 TCATGTCGAA
Statistics
Matches: 200, Mismatches: 19, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
45 1 0.00
46 159 0.80
47 40 0.20
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG
Found at i:25823865 original size:20 final size:20
Alignment explanation
Indices: 25823827--25823867 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
25823817 TTCTAATACG
*
25823827 TATATATATTATATGTATTT
1 TATATATATTATATATATTT
*
25823847 TATATATATTATGTATATTT
1 TATATATATTATATATATTT
25823867 T
1 T
25823868 TTTAATGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
TATATATATTATATATATTT
Found at i:25824090 original size:19 final size:21
Alignment explanation
Indices: 25824052--25824101 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
25824042 TACATTAGTG
25824052 TATATTTTATGTACATATAT-A
1 TATATTTTATGTACA-ATATCA
*
25824073 TATATTTTTTGTAC-ATATCA
1 TATATTTTATGTACAATATCA
25824093 T-TATTTTAT
1 TATATTTTAT
25824102 ATTATTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 11 0.42
20 2 0.08
21 13 0.50
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (21 bp):
TATATTTTATGTACAATATCA
Found at i:25825639 original size:16 final size:15
Alignment explanation
Indices: 25825613--25825647 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
25825603 TGATGTGAAT
25825613 AATATAAAATATTAA
1 AATATAAAATATTAA
*
25825628 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
25825644 AATA
1 AATA
25825648 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:25825824 original size:20 final size:21
Alignment explanation
Indices: 25825782--25825824 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
25825772 CCTTTTTTAG
* *
25825782 AATAATAATTAAATATACGAA
1 AATAATAATTAAATACACAAA
*
25825803 AATAAT-ATTATATACACAAA
1 AATAATAATTAAATACACAAA
25825823 AA
1 AA
25825825 GGTATATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (21 bp):
AATAATAATTAAATACACAAA
Found at i:25826591 original size:17 final size:17
Alignment explanation
Indices: 25826571--25826609 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
25826561 AAAAAAATAA
*
25826571 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
25826588 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
25826605 AAAAT
1 AAAAT
25826610 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:25826867 original size:25 final size:25
Alignment explanation
Indices: 25826834--25826881 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
25826824 GTTTTTTTTT
25826834 GGGGTTAGGTTTTTTTTTGGGGGGG
1 GGGGTTAGGTTTTTTTTTGGGGGGG
25826859 GGGGTTAGGTTTTTTTTTGGGGG
1 GGGGTTAGGTTTTTTTTTGGGGG
25826882 ACTTAATGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.04, C:0.00, G:0.50, T:0.46
Consensus pattern (25 bp):
GGGGTTAGGTTTTTTTTTGGGGGGG
Found at i:25831520 original size:16 final size:17
Alignment explanation
Indices: 25831489--25831520 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25831479 AAATAAAAAT
25831489 AAAATAATACTTTTAAC
1 AAAATAATACTTTTAAC
25831506 AAAATAATA-TTTTAA
1 AAAATAATACTTTTAA
25831521 ATTTTATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAATAATACTTTTAAC
Found at i:25831614 original size:17 final size:18
Alignment explanation
Indices: 25831573--25831614 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
25831563 CATTTCAAAA
* *
25831573 AATTTTAATATCACTTTT
1 AATTTTTATATCACATTT
*
25831591 AAATTTTATAT-ACATTT
1 AATTTTTATATCACATTT
25831608 AATTTTT
1 AATTTTT
25831615 TATTAAGTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (18 bp):
AATTTTTATATCACATTT
Found at i:25832167 original size:26 final size:26
Alignment explanation
Indices: 25832133--25832183 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25832123 TCTTCTGAAT
* *
25832133 TTTTTAAATATAAAATA-ATATTTTTG
1 TTTTAAAATAAAAAATAGA-ATTTTTG
25832159 TTTTAAAATAAAAAATAGAATTTTT
1 TTTTAAAATAAAAAATAGAATTTTT
25832184 CTTAGATACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (26 bp):
TTTTAAAATAAAAAATAGAATTTTTG
Found at i:25836742 original size:22 final size:22
Alignment explanation
Indices: 25836700--25836742 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
25836690 GTTTAATATG
* **
25836700 TAATTTTATATATAATTTTTTT
1 TAATTTTATAAATAAAATTTTT
25836722 TAATTTTATAAATAAAATTTT
1 TAATTTTATAAATAAAATTTT
25836743 AATTTAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TAATTTTATAAATAAAATTTTT
Found at i:25838659 original size:23 final size:22
Alignment explanation
Indices: 25838620--25838677 Score: 62
Period size: 23 Copynumber: 2.6 Consensus size: 22
25838610 AGAAATAGAA
* *
25838620 AAAATTGTAAAAGTATAAACAT
1 AAAATTCTAAAAATATAAACAT
* **
25838642 AAAATTTTAAAATATATAATTAT
1 AAAATTCTAAAA-ATATAAACAT
25838665 AAAATTCTAAAAA
1 AAAATTCTAAAAA
25838678 GATATTTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 12 0.40
23 18 0.60
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (22 bp):
AAAATTCTAAAAATATAAACAT
Found at i:25838975 original size:15 final size:15
Alignment explanation
Indices: 25838955--25838985 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25838945 ATCAAAAGTG
*
25838955 TATTTAATATTTTAA
1 TATTTAATATTATAA
25838970 TATTTAATATTATAA
1 TATTTAATATTATAA
25838985 T
1 T
25838986 TTTCTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTTAATATTATAA
Found at i:25839263 original size:31 final size:30
Alignment explanation
Indices: 25839227--25839289 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
25839217 CAAAAAACTT
25839227 AACAATCCAATGACTTAAATAAAAAATTTTA
1 AACAATCC-ATGACTTAAATAAAAAATTTTA
* * * *
25839258 AACAATTCATTACTTAAATGAAAATTTTTA
1 AACAATCCATGACTTAAATAAAAAATTTTA
25839288 AA
1 AA
25839290 TAATTTAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 21 0.75
31 7 0.25
ACGTcount: A:0.52, C:0.11, G:0.03, T:0.33
Consensus pattern (30 bp):
AACAATCCATGACTTAAATAAAAAATTTTA
Found at i:25839338 original size:31 final size:31
Alignment explanation
Indices: 25839282--25839352 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
25839272 TAAATGAAAA
*
25839282 TTTTTAAATAATTTAATGCCCATTTTATAAC
1 TTTTTAAATAATTTAATGACCATTTTATAAC
* ** *
25839313 TTTTTGAATAATTTAATGATTATTTTGTAAC
1 TTTTTAAATAATTTAATGACCATTTTATAAC
*
25839344 TCTTTAAAT
1 TTTTTAAAT
25839353 TTAAAAAATA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.52
Consensus pattern (31 bp):
TTTTTAAATAATTTAATGACCATTTTATAAC
Found at i:25844816 original size:28 final size:29
Alignment explanation
Indices: 25844771--25844840 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
25844761 TAAAAACAAA
* * *
25844771 AAAAATTAATAATT-AAATATTTCTTTAT
1 AAAATTTAATAATTCAAATAATTCATTAT
25844799 AAAATTTAA-AATTCAAATAATTCATTAT
1 AAAATTTAATAATTCAAATAATTCATTAT
25844827 -AAATTTAATAATTC
1 AAAATTTAATAATTC
25844841 CTATGTATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 12 0.32
28 25 0.68
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (29 bp):
AAAATTTAATAATTCAAATAATTCATTAT
Found at i:25845922 original size:22 final size:22
Alignment explanation
Indices: 25845896--25845942 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
25845886 ATAAATTCAC
25845896 TATAA-TAATATCCTATAT-AATA
1 TATAATTAATAT--TATATAAATA
25845918 TATAATTAATATTATATAAATA
1 TATAATTAATATTATATAAATA
25845940 TAT
1 TAT
25845943 TTTTATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 5 0.22
22 12 0.52
23 6 0.26
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (22 bp):
TATAATTAATATTATATAAATA
Found at i:25852278 original size:2 final size:2
Alignment explanation
Indices: 25852271--25852301 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
25852261 CCTCCTTTCA
25852271 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
25852302 ACAGATGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:25854005 original size:2 final size:2
Alignment explanation
Indices: 25853998--25854027 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
25853988 CCTCCTTTCA
25853998 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
25854028 TCACCACACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:25855785 original size:15 final size:15
Alignment explanation
Indices: 25855761--25855791 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25855751 TACTAATGTC
25855761 ATTTAATATTAAAAT
1 ATTTAATATTAAAAT
*
25855776 ATTTAGTATTAAAAT
1 ATTTAATATTAAAAT
25855791 A
1 A
25855792 ATATTGTGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (15 bp):
ATTTAATATTAAAAT
Found at i:25856695 original size:22 final size:22
Alignment explanation
Indices: 25856670--25856720 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
25856660 AATTTTCACG
25856670 CGTTTTTTGATCGTATTCCTGA
1 CGTTTTTTGATCGTATTCCTGA
25856692 CGTTTTTTGATCGTATTCCTGA
1 CGTTTTTTGATCGTATTCCTGA
*
25856714 CATTTTT
1 CGTTTTT
25856721 AATATTATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.14, C:0.18, G:0.16, T:0.53
Consensus pattern (22 bp):
CGTTTTTTGATCGTATTCCTGA
Found at i:25862548 original size:72 final size:72
Alignment explanation
Indices: 25862439--25863515 Score: 867
Period size: 72 Copynumber: 15.2 Consensus size: 72
25862429 TCCTTAGATA
* * * * *
25862439 CCTCTTCAAGTTCCTTATTTTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAAGACTCTCCTCC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
25862504 TTGGTTG
66 TTGGGTG
* *
25862511 CCT-TTCCAGGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTTCCTCAATACTCTCC-C
1 CCTCTT-CAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCAC
*
25862574 CTTTGGGTT
65 C-TTGGGTG
* * * * * * * **
25862583 CCTCTTCAGGTTCCTTAGTT-TCAACCAGCCTTGATTTTGGTACATTTTCCTCAACATTCCCCTT
1 CCTCTTCAGGTTCCTT-CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCAC
25862647 CTTGGGTG
65 CTTGGGTG
* * *** *
25862655 CGTCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCCATACCTTCTT-CTCAATACTCTCCAC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCAC
* *
25862719 CTTAGGTA
65 CTTGGGTG
* * * * * * * *
25862727 TCTCTTCAAGTTCCTTCTTCTCAACTAACTTTGATTTTGGTACTTTTTCCTGAACCCTCTCCTCC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
25862792 TTGGGTG
66 TTGGGTG
* * * * **
25862799 CCTCATT-AGGTTTCTTCTTCTTAACCAAATTTGGTTTTGGTACCTTTTCCTCATCGGTCTCCAC
1 CCTC-TTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCAC
*
25862863 CTTGGGTA
65 CTTGGGTG
* * * * *
25862871 CCTCCTT-AGG---CTCCTTCTCAACCAAATTTGGTTTTGATTCCTTTTCCTCAACACTCTCCCC
1 CCT-CTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCAC
25862932 CTTGGGTG
65 CTTGGGTG
* * * * * * *
25862940 CATCTTTAGGTTCCTTCTTCTCAATCAACTTCGGTTTTGGTA-ATTTCTTCTCAACACCCTCCAC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTT-TCCTCAACACTCTCCAC
*
25863004 CTTGGGTA
65 CTTGGGTG
* * * * * * *
25863012 TCTCTTCAGGTTCCTTTTTCTCAACCAACTTTGATTTTGGTACTTTTTTCTCAACAATCTCCCCC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
25863077 TTGGGTA
66 TTGGGTG
* * * *
25863084 CCTCTTCAGG------------AACCAACTTTGATTTTGGTACTTTTTTCTCAACAGTCTCCACC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
25863137 TTGGGTA
66 TTGGGTG
* * * *
25863144 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGATACCTTTTCTTCAACACTCACCCCC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
25863209 TTGGATG
66 TTGGGTG
* * * * * *** * ** *
25863216 CGTCCTT-AGTTTCCTCCTCCTCGATTGACTTCGGTTTTGAAACCTTCTT-CTCACCACTCTCCA
1 CCT-CTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCA
*
25863279 CCTTGGGTA
64 CCTTGGGTG
* * * * *
25863288 TCACTTCAAGTTCCTTCTTCTCGACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCCCC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
* *
25863353 TTCGATG
66 TTGGGTG
* * * * * * *
25863360 CGTCTTTAGGTTCTTTCTTCTCGATCGAA-TTTTGTTTTGGTACCTTCTT-CTCAACACTCTTCA
1 CCTCTTCAGGTTCCTTCTTCTC-AACCAACTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCA
* *
25863423 CCTTGTGTA
64 CCTTGGGTG
** * * * * *
25863432 CCTCTTCAGGTTTTTTCTTCTCAACCAACTTTAGTTTTGCTACTTTTTCCTCAACATTCTCC-TC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
25863496 TTGGGATT
66 TTGGG-TG
*
25863504 TCTCTTCAGGTT
1 CCTCTTCAGGTT
25863516 TCTCCACCTT
Statistics
Matches: 794, Mismatches: 174, Indels: 74
0.76 0.17 0.07
Matches are distributed among these distances:
60 58 0.07
68 3 0.00
69 55 0.07
71 27 0.03
72 628 0.79
73 23 0.03
ACGTcount: A:0.16, C:0.30, G:0.13, T:0.42
Consensus pattern (72 bp):
CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
TTGGGTG
Found at i:25862699 original size:144 final size:143
Alignment explanation
Indices: 25862439--25864279 Score: 1128
Period size: 144 Copynumber: 12.8 Consensus size: 143
25862429 TCCTTAGATA
* * * * *
25862439 CCTCTTCAAGTTCCTTATTTTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAAGACTCTCCTCC
1 CCTCTTCAGGTTCCTT-TTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACATTCCCCT-C
* *
25862504 TTGGTTGCCT-TTCCAGGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTTCCTCAATAC
64 TTGGGTGCCTCTT-CAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAATAC
25862568 TCTCC-CCTTTGGGT-T
128 TCTCCACC-TTGGGTAT
* * * *
25862583 CCTCTTCAGGTTCCTTAGTTTCAACCAGCCTTGATTTTGGTACATTTTCCTCAACATTCCCCTTC
1 CCTCTTCAGGTTCCTT-TTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACATTCCCC-TC
* * ***
25862648 TTGGGTGCGTCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCCATACCTTCTT-CTCAATAC
64 TTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAATAC
*
25862712 TCTCCACCTTAGGTAT
128 TCTCCACCTTGGGTAT
* * * * * ** *
25862728 -CTCTTCAAGTTCCTTCTTCTCAACTAACTTTGATTTTGGTACTTTTTCCTGAACCCTCTCCTCC
1 CCTCTTCAGGTTCCTT-TTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACATTCCCCT-C
* * *
25862792 TTGGGTGCCTCATT-AGGTTTCTTCTTCTTAACCAAATTTGGTTTTGGTACCTTTTCCTC-AT-C
64 TTGGGTGCCTC-TTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAATAC
25862854 GGTCTCCACCTTGGGTA-
128 --TCTCCACCTTGGGTAT
* * * * * *
25862871 CCTCCTT-AGGCTCC--TTCTCAACCAAATTTGGTTTTGATTCCTTTTCCTCAACACTCTCCCC-
1 CCT-CTTCAGGTTCCTTTTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACA-T-TCCCCT
* * * * * * *
25862932 CTTGGGTGCATCTTTAGGTTCCTTCTTCTCAATCAACTTCGGTTTTGGTA-ATTTCTTCTCAACA
63 CTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTT-TCCTCAATA
*
25862996 CCCTCCACCTTGGGTAT
127 CTCTCCACCTTGGGTAT
* *
25863013 -CTCTTCAGGTTCCTTTTTCTCAACCAACTTTGATTTTGGTACTTTTTTCTCAACAATCTCCCC-
1 CCTCTTCAGGTTCCTTTTT-TCAACCAACTTTGATTTTGGTACCTTTTCCTCAAC-AT-TCCCCT
* * * * * *
25863076 CTTGGGTACCTCTTCAGG------------AACCAACTTTGATTTTGGTACTTTTTTCTCAACAG
63 CTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAATAC
25863129 TCTCCACCTTGGGTA-
128 TCTCCACCTTGGGTAT
* * * * * *
25863144 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGATACCTTTTCTTCAACACTCACCCCC
1 CCTCTTCAGGTTCCTT-TTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACATTC-CCCTC
* * * * * * *** * ** **
25863209 TTGGATGCGTCCTT-AGTTTCCTCCTCCTCGATTGACTTCGGTTTTGAAACCTTCTT-CTCACCA
64 TTGGGTGCCT-CTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAATA
25863272 CTCTCCACCTTGGGTAT
127 CTCTCCACCTTGGGTAT
* * * * *
25863289 -CACTTCAAGTTCCTTCTTCTCGACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCCC-
1 CCTCTTCAGGTTCCTT-TTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACA-T-TCCCCT
* * * * * * * * *
25863352 CTTCGATGCGTCTTTAGGTTCTTTCTTCTCGATCGAA-TTTTGTTTTGGTACCTTCTT-CTCAAC
63 CTTGGGTGCCTCTTCAGGTTCCTTCTTCTC-AACCAACTTTGGTTTTGGTACCTT-TTCCTCAAT
* *
25863415 ACTCTTCACCTTGTGTA-
126 ACTCTCCACCTTGGGTAT
* * * *
25863432 CCTCTTCAGGTT-TTTTCTTCTCAACCAACTTT-AGTTTTGCTACTTTTTCCTCAACATTCTCCT
1 CCTCTTCAGGTTCCTTT-TT-TCAACCAACTTTGA-TTTTGGTACCTTTTCCTCAACATTCCCCT
**
25863495 CTTGGGATTTCTCTTCAGGTTTCTCCACCTTGGGTACCTCCTTCTCAACCAACTTTGGTTTTGGT
63 CTTGGG-TGCCTCTTCAGG--T-T---CC-----T---T-CTTCTCAACCAACTTTGGTTTTGGT
* * *
25863560 ACCTTTTCCTCAACAATCTCCACCTTGGGTGT
112 ACCTTTTCCTCAATACTCTCCACCTTGGGTAT
* * * * * *
25863592 -GTCTTCAGGTTCCTTTTTCTCGATCAACTTTGGTTTTGGTGCCTTCTT-CTCAACACTCTCCAC
1 CCTCTTCAGGTTCCTTTTT-TCAACCAACTTTGATTTTGGTACCTT-TTCCTCAACA-T-TCCCC
* * ** * * * *
25863655 -CTTGGGTACCTCTTCAAGTTTTTTCTTTTCAACCAACTTT-G--CT-G--CTTTTTCCTCAACA
62 TCTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAATA
* *
25863713 CTCTCCCCCTTGGGT-G
127 CTCTCCACCTTGGGTAT
* * * * * * *
25863729 CCTCTTCAAGTTTCTTCTTCTCTACCAACTTTGGTTCTGGTACCTTTTCCTCAACACTCTCCAC-
1 CCTCTTCAGGTTCCTT-TTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACA-T-TCCCCT
* * * * * *
25863793 CTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAAATTTTGTTCTGGTACCTTTTCCCCAACAC
63 CTTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAATAC
*
25863858 TCTCCACCTTGCGTA-
128 TCTCCACCTTGGGTAT
* *
25863873 CCTCTTCAGGTTCC--TTCTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACATTGTTCCC-C
1 CCTCTTCAGGTTCCTTTTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACA-T-TCCCCTC
** * * * * * * *
25863935 TTACGTACTTCTTCAGATTCCTTCTTATCAACCAACTTTGATTTTGGTACCTTTTCCTGAACACT
64 TTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAATACT
25864000 CTCCACCTTGGGTA-
129 CTCCACCTTGGGTAT
** * * * * * * * *
25864014 CCTCTTTTGGTTCCTTCTTCTCAGCCGACTTTGGTTTTGGTACCTGTTCCTCAATAGTCTCCTCC
1 CCTCTTCAGGTTCCTT-TTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACATTCCCCT-C
* * * * * * *
25864079 TTGGGTACCTCTTTAGGTTCATTGGTTTCAGTTTTAACCAACTTTGGTTTTGGCACCTTTTCCTT
64 TTGGGTGCCTCTTCAGGTTCCTT--CTTC----TCAACCAACTTTGGTTTTGGTACCTTTTCCTC
* * * * *
25864144 AACACTCTCCTCTTTGAGCAT
123 AATACTCTCCACCTTGGGTAT
* * ** * * * * * *
25864165 -CTGTTCAGTTTCCTTATTTTTGACCAGCTTTGGTTTTGGCACCTTTTGCTCAACGTTTCCCTTC
1 CCTCTTCAGGTTCCTT-TTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAAC-ATTCCCCTC
* * * * * **
25864229 TTGGGTACCTTTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTTGGTACC
64 TTGGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACC
25864280 GTCTCAGCTT
Statistics
Matches: 1337, Mismatches: 260, Indels: 200
0.74 0.14 0.11
Matches are distributed among these distances:
130 2 0.00
131 4 0.00
132 95 0.07
133 8 0.01
137 2 0.00
138 110 0.08
139 3 0.00
140 9 0.01
141 221 0.17
142 11 0.01
143 24 0.02
144 596 0.45
145 21 0.02
146 5 0.00
147 1 0.00
148 3 0.00
150 104 0.08
151 4 0.00
155 1 0.00
156 1 0.00
157 1 0.00
158 7 0.01
159 89 0.07
160 12 0.01
161 3 0.00
ACGTcount: A:0.15, C:0.30, G:0.13, T:0.42
Consensus pattern (143 bp):
CCTCTTCAGGTTCCTTTTTTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACATTCCCCTCTT
GGGTGCCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAATACTCT
CCACCTTGGGTAT
Found at i:25862839 original size:216 final size:216
Alignment explanation
Indices: 25862441--25864098 Score: 634
Period size: 216 Copynumber: 7.7 Consensus size: 216
25862431 CTTAGATACC
* *** *
25862441 TCTTCAAGTTCCTTATTTTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAAGACTCTCCTCCTT
1 TCTTCAAGTTCCTTATTCTCAACCAACTTTGGTTTCCATACCTTTTCCTCAAGACTCTCCACCTT
* *
25862506 GGTTGCCTTTCCAGGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTTCCTCAATACTCT
66 GGTTGCCTTTCCAAGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTTCCTCAACACTCT
* * **
25862571 CCCCTTTGGGTTCCTCTTCAGGTTCCTTAGTTTCAACCAGCCTTGATTTTGGTACATTTTCCTCA
131 CCCCTTTGGGTGCCTCTTCAGGTTCCTTACTTTCAACCAAACTTGATTTTGGTACATTTTCCTCA
25862636 ACATTCCCCTTCTTGGGTGCG
196 ACATTCCCCTTCTTGGGTGCG
* * * *
25862657 TCTTCAGGTTCCTTCTTCTCAATCAACTTTGGTTTCCATACCTTCTT-CTCAATACTCTCCACCT
1 TCTTCAAGTTCCTTATTCTCAACCAACTTTGGTTTCCATACCTT-TTCCTCAAGACTCTCCACCT
* * *
25862721 TAGGTAT--CTCTT-CAAGTTCCTTCTTCTCAACTAACTTT-GATTTTGGTACTTTTTCCTGAAC
65 T-GGT-TGCCT-TTCCAAGTTCCTTCTTCTCAACCAACTTTAG-TTTTGGTACCTTTTCCTCAAC
* * * * * *
25862782 CCTCTCCTCC-TTGGGTGCCTCATT-AGGTTTCTT-CTTCTTAACCAAATTTGGTTTTGGTACCT
126 ACTCTCC-CCTTTGGGTGCCTC-TTCAGGTTCCTTACTT-TCAACCAAACTTGATTTTGGTACAT
* ** * ** * *
25862844 TTTCCTCATCGGTCTCCACCTTGGGTACC
188 TTTCCTCAACATTCCCCTTCTTGGGTGCG
* * * ** * * *
25862873 TCCTT-AGGCTCC---TTCTCAACCAAATTTGGTTTTGATTCCTTTTCCTCAACACTCTCCCCCT
1 T-CTTCAAGTTCCTTATTCTCAACCAACTTTGGTTTCCATACCTTTTCCTCAAGACTCTCCACCT
* * * ** * *
25862934 TGGGTGCATCTTT--AGGTTCCTTCTTCTCAATCAACTTCGGTTTTGGTA-ATTTCTTCTCAACA
65 TGGTTGC--CTTTCCAAGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTT-TCCTCAACA
* ** * *
25862996 CCCTCCACC-TTGGGTATCTCTTCAGGTTCCTT-TTTCTCAACC-AACTTTGATTTTGGTACTTT
127 CTCTCC-CCTTTGGGTGCCTCTTCAGGTTCCTTACTT-TCAACCAAAC-TTGATTTTGGTACATT
* *
25863058 TTTCTCAACAATCTCCCC--CTTGGGTAC-
189 TTCCTCAAC-AT-TCCCCTTCTTGGGTGCG
** * *** * * * *
25863085 -C-TC---TT-C--A---GGAACCAACTTTGATTTTGGTACTTTTTTCTCAACAGTCTCCACCTT
1 TCTTCAAGTTCCTTATTCTCAACCAACTTTGGTTTCCATACCTTTTCCTCAAGACTCTCCACCTT
* * * * * *
25863139 GGGTACCTCTT-CAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGATACCTTTTCTTCAACACTC
66 GGTTGCCT-TTCCAAGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTTCCTCAACACTC
* * * * * * * * *** * ** *
25863203 ACCCCCTTGGATGCGTCCTT-AGTTTCC-TCCTCCTCGA-TTGACTTCGGTTTTGAAACCTTCTT
130 TCCCCTTTGGGTGCCT-CTTCAGGTTCCTTACT-TTCAACCAAACTT-GATTTTGGTACATT-TT
* * * ** *
25863265 -CTCACCACTCTCCACCTTGGGTATC-
191 CCTCAACATTCCCCTTCTTGGGT-GCG
* * * *** * *
25863290 ACTTCAAGTTCCTTCTTCTCGACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCCCCTT
1 TCTTCAAGTTCCTTATTCTCAACCAACTTTGGTTTCCATACCTTTTCCTCAAGACTCTCCACCTT
* * * * * * *
25863355 CGATGCGTCTTT--AGGTTCTTTCTTCTCGATCGAA-TTTTGTTTTGGTACCTTCTT-CTCAACA
66 GGTTGC--CTTTCCAAGTTCCTTCTTCTC-AACCAACTTTAGTTTTGGTACCTT-TTCCTCAACA
* * * * * * * *
25863416 CTCTTCACC-TTGTGTACCTCTTCAGGTT-TTTTCTTCTCAACC-AACTTTAGTTTTGCTACTTT
127 CTC-TCCCCTTTGGGTGCCTCTTCAGGTTCCTTACTT-TCAACCAAACTTGA-TTTTGGTACATT
* *
25863478 TTCCTCAACATTCTCC-TCTTGGGATTTC-
189 TTCCTCAACATTCCCCTTCTTGGG--TGCG
* ***
25863506 TCTTCAGGTTTCTCCACCTTGGGTACCTCCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTC
1 TCTTCAAG--T-T---CC-T---TA-----TTCTCAACCAACTTTGGTTTCCATACCTTTTCCTC
* * * * * * * * *
25863571 AACAATCTCCACCTTGGGTGTGTC-TT-CAGGTTCCTTTTTCTCGATCAACTTTGGTTTTGGTGC
51 AAGACTCTCCACCTT-GGT-TGCCTTTCCAAGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTAC
* * * *
25863634 CTTCTT-CTCAACACTCTCCACC-TTGGGTACCTCTTCAAGTT-TTTTCTTTTCAACC-AAC---
114 CTT-TTCCTCAACACTCTCC-CCTTTGGGTGCCTCTTCAGGTTCCTTAC-TTTCAACCAAACTTG
* * * *
25863692 --TTTGCTGCTTTTTCCTCAACACTCTCCCC--CTTGGGTGCC
176 ATTTTGGTACATTTTCCTCAACA-T-TCCCCTTCTTGGGTGCG
* * * ** *
25863731 TCTTCAAGTTTCTTCTTCTCTACCAACTTTGG-TTCTGGTACCTTTTCCTCAACACTCTCCACCT
1 TCTTCAAGTTCCTTATTCTCAACCAACTTTGGTTTC-CATACCTTTTCCTCAAGACTCTCCACCT
* * * * * * *
25863795 TGGGTACCTCTT-CAGGTTCCTTCTTCTCAACCAAATTTTGTTCTGGTACCTTTTCCCCAACACT
65 TGGTTGCCT-TTCCAAGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTTCCTCAACACT
* * *
25863859 CTCCACC-TTGCGTACCTCTTCAGGTTCCTT-C--TCAACC-AACTTTGATTTTGGTACCTTTTC
129 CTCC-CCTTTGGGTGCCTCTTCAGGTTCCTTACTTTCAACCAAAC-TTGATTTTGGTACATTTTC
* ** * *
25863919 CTCAACATTGTTCCC--CTTACGTACT
192 CTCAACA-T-TCCCCTTCTTGGGTGCG
* * * *** * *
25863944 TCTTC-AGATTCCTTCTTATCAACCAACTTTGATTTTGGTACCTTTTCCTGAACACTCTCCACCT
1 TCTTCAAG-TTCCTTATTCTCAACCAACTTTGGTTTCCATACCTTTTCCTCAAGACTCTCCACCT
* * *** * * * * * *
25864008 TGGGTACCTCTT-TTGGTTCCTTCTTCTCAGCCGACTTTGGTTTTGGTACCTGTTCCTCAATAGT
65 TGGTTGCCT-TTCCAAGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTTCCTCAACACT
* *
25864072 CTCCTCC-TTGGGTACCTCTTTAGGTTC
129 CTCC-CCTTTGGGTGCCTCTTCAGGTTC
25864099 ATTGGTTTCA
Statistics
Matches: 1132, Mismatches: 214, Indels: 195
0.73 0.14 0.13
Matches are distributed among these distances:
202 6 0.01
203 8 0.01
204 125 0.11
205 9 0.01
206 2 0.00
207 12 0.01
208 2 0.00
209 7 0.01
210 115 0.10
211 4 0.00
212 13 0.01
213 295 0.26
214 5 0.00
215 21 0.02
216 296 0.26
217 26 0.02
218 5 0.00
219 2 0.00
222 3 0.00
223 2 0.00
224 2 0.00
225 27 0.02
226 8 0.01
227 4 0.00
230 6 0.01
231 122 0.11
232 3 0.00
233 2 0.00
ACGTcount: A:0.15, C:0.31, G:0.13, T:0.41
Consensus pattern (216 bp):
TCTTCAAGTTCCTTATTCTCAACCAACTTTGGTTTCCATACCTTTTCCTCAAGACTCTCCACCTT
GGTTGCCTTTCCAAGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTTCCTCAACACTCT
CCCCTTTGGGTGCCTCTTCAGGTTCCTTACTTTCAACCAAACTTGATTTTGGTACATTTTCCTCA
ACATTCCCCTTCTTGGGTGCG
Found at i:25863107 original size:60 final size:60
Alignment explanation
Indices: 25863034--25863153 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
25863024 CCTTTTTCTC
*
25863034 AACCAACTTTGATTTTGGTACTTTTTTCTCAACAATCTCCCCCTTGGGTACCTCTTCAGG
1 AACCAACTTTGATTTTGGTACTTTTTTCTCAACAATCTCCACCTTGGGTACCTCTTCAGG
*
25863094 AACCAACTTTGATTTTGGTACTTTTTTCTCAACAGTCTCCACCTTGGGTACCTCTTCAGG
1 AACCAACTTTGATTTTGGTACTTTTTTCTCAACAATCTCCACCTTGGGTACCTCTTCAGG
25863154 TTCCTTCTTC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.20, C:0.28, G:0.14, T:0.38
Consensus pattern (60 bp):
AACCAACTTTGATTTTGGTACTTTTTTCTCAACAATCTCCACCTTGGGTACCTCTTCAGG
Found at i:25863208 original size:132 final size:132
Alignment explanation
Indices: 25862965--25863212 Score: 363
Period size: 132 Copynumber: 1.9 Consensus size: 132
25862955 TCTTCTCAAT
* * *
25862965 CAACTTCGGTTTTGGTAATTTCTTCTCAACACCCTCCACCTTGGGTATCTCTTCAGGTTCCTTTT
1 CAACTTCGATTTTGGTAATTTCTTCTCAACACCCTCCACCTTGGGTACCTCTTCAGGTTCCTTCT
* * *
25863030 TCTCAACCAACTTTGATTTTGGTACTTTTTTCTCAACAATCTCCCCCTTGGGTACCTCTTCAGGA
66 TCTCAACCAACTTTGATTTTGATACTTTTCTCTCAACAATCACCCCCTTGGGTACCTCTTCAGGA
25863095 AC
131 AC
* * * **
25863097 CAACTTTGATTTTGGTACTTTTTTCTCAACAGTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCT
1 CAACTTCGATTTTGGTAATTTCTTCTCAACACCCTCCACCTTGGGTACCTCTTCAGGTTCCTTCT
* *
25863162 TCTCAACCAACTTTGGTTTTGATACCTTTTCT-TCAACACTCACCCCCTTGG
66 TCTCAACCAACTTTGATTTTGATA-CTTTTCTCTCAACAATCACCCCCTTGG
25863213 ATGCGTCCTT
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
132 96 0.94
133 6 0.06
ACGTcount: A:0.18, C:0.30, G:0.12, T:0.40
Consensus pattern (132 bp):
CAACTTCGATTTTGGTAATTTCTTCTCAACACCCTCCACCTTGGGTACCTCTTCAGGTTCCTTCT
TCTCAACCAACTTTGATTTTGATACTTTTCTCTCAACAATCACCCCCTTGGGTACCTCTTCAGGA
AC
Found at i:25863620 original size:72 final size:72
Alignment explanation
Indices: 25863535--25864279 Score: 670
Period size: 72 Copynumber: 10.4 Consensus size: 72
25863525 TGGGTACCTC
* ***
25863535 CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACAATCTCCACCTTGGGTGTGTCTTCAG
1 CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAG
25863600 GTTCCTT
66 GTTCCTT
* * * *
25863607 TTTCTCGATCAACTTTGGTTTTGGTGCCTTCTT-CTCAACACTCTCCACCTTGGGTACCTCTTCA
1 CTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCACCTTGGGTACCTCTTCA
* **
25863671 AGTTTTTT
65 GGTTCCTT
* * * * * *
25863679 CTTTTCAACCAACTTT-G--CT-G--CTTTTTCCTCAACACTCTCCCCCTTGGGTGCCTCTTCAA
1 CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAG
*
25863738 GTTTCTT
66 GTTCCTT
* *
25863745 CTTCTCTACCAACTTTGGTTCTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAG
1 CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAG
25863810 GTTCCTT
66 GTTCCTT
* * * * *
25863817 CTTCTCAACCAAATTTTGTTCTGGTACCTTTTCCCCAACACTCTCCACCTTGCGTACCTCTTCAG
1 CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAG
25863882 GTT-C--
66 GTTCCTT
* * * ** *
25863886 CTTCTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACATTGTTCC-CCTTACGTACTTCTTCA
1 CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACT-CTCCACCTTGGGTACCTCTTCA
*
25863950 GATTCCTT
65 GGTTCCTT
* * * **
25863958 CTTATCAACCAACTTTGATTTTGGTACCTTTTCCTGAACACTCTCCACCTTGGGTACCTCTTTTG
1 CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAG
25864023 GTTCCTT
66 GTTCCTT
* * * * * * *
25864030 CTTCTCAGCCGACTTTGGTTTTGGTACCTGTTCCTCAATAGTCTCCTCCTTGGGTACCTCTTTAG
1 CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAG
*
25864095 GTTCATT
66 GTTCCTT
* * * * * * * * *
25864102 GGTTTCAGTTTTAACCAACTTTGGTTTTGGCACCTTTTCCTTAACACTCTCCTCTTTGAGCATCT
1 --CTTC----TCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCT
* *
25864167 GTTCAGTTTCCTT
60 CTTCAGGTTCCTT
* * ** * * * * * *
25864180 ATTTTTGACCAGCTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCC-CTTCTTGGGTACCTTTTC
1 CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCAC--CTTGGGTACCTCTTC
*
25864243 AGGTTTCTT
64 AGGTTCCTT
* * **
25864252 CTTTTCAGCCAACTTCAGTTTTGGTACC
1 CTTCTCAACCAACTTTGGTTTTGGTACC
25864280 GTCTCAGCTT
Statistics
Matches: 549, Mismatches: 103, Indels: 42
0.79 0.15 0.06
Matches are distributed among these distances:
65 2 0.00
66 53 0.10
67 1 0.00
68 1 0.00
69 57 0.10
70 6 0.01
71 9 0.02
72 361 0.66
73 2 0.00
74 3 0.01
76 2 0.00
78 52 0.09
ACGTcount: A:0.15, C:0.30, G:0.13, T:0.42
Consensus pattern (72 bp):
CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAG
GTTCCTT
Found at i:25863724 original size:138 final size:138
Alignment explanation
Indices: 25863563--25864091 Score: 460
Period size: 141 Copynumber: 3.8 Consensus size: 138
25863553 TTTTGGTACC
** * * * *
25863563 TTTTCCTCAACAATCTCCACCTTGGGTGTGTCTTCAGGTTCCTTTTTCTCGATCAACTTTGGTTT
1 TTTTCCTCAACAATCTCCACCTTGGGTGCCTCTTCAAGTTCCTTCTTCTCGACCAACTTTGGTTC
* ** *
25863628 TGGTGCCTTCTT-CTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTTTTTCTTTTCAACCAAC
66 TGGTACCTT-TTCCTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTCCTTCTTCTCAACCAAC
25863692 TTTGCTGCT
130 TTTGCTGCT
* * * *
25863701 TTTTCCTCAACACTCTCCCCCTTGGGTGCCTCTTCAAGTTTCTTCTTCTCTACCAACTTTGGTTC
1 TTTTCCTCAACAATCTCCACCTTGGGTGCCTCTTCAAGTTCCTTCTTCTCGACCAACTTTGGTTC
* *
25863766 TGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAAAT
66 TGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTCCTTCTTCTCAACC-AAC
*
25863831 TTTGTTCTGGTACC
130 TTTG--CT-G--CT
* * * * * * * *
25863845 TTTTCCCCAACACTCTCCACCTTGCGTACCTCTTCAGGTT-C--CTTCTCAACCAACTTTGATTT
1 TTTTCCTCAACAATCTCCACCTTGGGTGCCTCTTCAAGTTCCTTCTTCTCGACCAACTTTGGTTC
* * ** * *
25863907 TGGTACCTTTTCCTCAACATTGTTCC-CCTTACGTACTTCTTC-AGATTCCTTCTTATCAACCAA
66 TGGTACCTTTTCCTCAACACT-CTCCACCTTGGGTACCTCTTCAAG-TTCCTTCTTCTCAACCAA
* *
25863970 CTTTGATTTTGGTACC
129 CTTTG---CT-G--CT
* * * *** *
25863986 TTTTCCTGAACACTCTCCACCTTGGGTACCTCTTTTGGTTCCTTCTTCTC-AGCCGACTTTGGTT
1 TTTTCCTCAACAATCTCCACCTTGGGTGCCTCTTCAAGTTCCTTCTTCTCGA-CCAACTTTGGTT
* * * * *
25864050 TTGGTACCTGTTCCTCAATAGTCTCCTCCTTGGGTACCTCTT
65 CTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTT
25864092 TAGGTTCATT
Statistics
Matches: 328, Mismatches: 48, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
137 2 0.01
138 108 0.33
139 6 0.02
140 7 0.02
141 112 0.34
142 5 0.02
143 5 0.02
144 83 0.25
ACGTcount: A:0.15, C:0.32, G:0.12, T:0.41
Consensus pattern (138 bp):
TTTTCCTCAACAATCTCCACCTTGGGTGCCTCTTCAAGTTCCTTCTTCTCGACCAACTTTGGTTC
TGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTCCTTCTTCTCAACCAACT
TTGCTGCT
Found at i:25864057 original size:213 final size:207
Alignment explanation
Indices: 25863539--25864098 Score: 640
Period size: 213 Copynumber: 2.7 Consensus size: 207
25863529 TACCTCCTTC
* ***
25863539 TCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACAATCTCCACCTTGGGTGTGTCTTCAGGTTC
1 TCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTC
* * *
25863604 CTTTTTCTC-GATCAACTTTGGTTTTGGTGCCTTCTT-CTCAACACTCTCCACCTTGGGTACCTC
66 CTTCTTCTCAG-CCAACTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCACCTTGGGTACCTC
* * * * ** *
25863667 TTCAAGTTTTTTCTTTTCAACCAACTTTGCTGCTTTTTCCTCAACACTCTCCCCCTTGGGTGCCT
129 TTC-AG--GTTCCTTCTCAACCAACTTTGCTGCCTTTTCCTCAACACTCTCCCCCTTACGTACCT
* *
25863732 CTTCAAGTTTCTTCTTC
191 CTTCAAGTTCCTTCTTA
* *
25863749 TCTACCAACTTTGGTTCTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTC
1 TCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTC
* * * * * *
25863814 CTTCTTCTCAACCAAATTTTGTTCTGGTACCTTTTCCCCAACACTCTCCACCTTGCGTACCTCTT
66 CTTCTTCTCAGCCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTT
* * * * *
25863879 CAGGTTCCTTCTCAACCAACTTTGATTTTGGTACCTTTTCCTCAACATTGTTCCCCTTACGTACT
131 CAGGTTCCTTCTCAACCAACTTTG---CT-G--CCTTTTCCTCAACACTCTCCCCCTTACGTACC
25863944 TCTTC-AGATTCCTTCTTA
190 TCTTCAAG-TTCCTTCTTA
* * **
25863962 TCAACCAACTTTGATTTTGGTACCTTTTCCTGAACACTCTCCACCTTGGGTACCTCTTTTGGTTC
1 TCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTC
* * * * *
25864027 CTTCTTCTCAGCCGACTTTGGTTTTGGTACCTGTTCCTCAATAGTCTCCTCCTTGGGTACCTCTT
66 CTTCTTCTCAGCCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTT
*
25864092 TAGGTTC
131 CAGGTTC
25864099 ATTGGTTTCA
Statistics
Matches: 294, Mismatches: 47, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
207 18 0.06
209 4 0.01
210 113 0.38
211 1 0.00
212 2 0.01
213 156 0.53
ACGTcount: A:0.15, C:0.31, G:0.13, T:0.41
Consensus pattern (207 bp):
TCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAGGTTC
CTTCTTCTCAGCCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTT
CAGGTTCCTTCTCAACCAACTTTGCTGCCTTTTCCTCAACACTCTCCCCCTTACGTACCTCTTCA
AGTTCCTTCTTA
Found at i:25864325 original size:117 final size:116
Alignment explanation
Indices: 25864186--25867737 Score: 2040
Period size: 117 Copynumber: 30.0 Consensus size: 116
25864176 CCTTATTTTT
* * *
25864186 GACCAGCTTTGGTTTTGGCACCTTTTGCTCAACGTTTCCCTTCTTGGGTACCTTTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTT-CCTCCTTGGGTACCTCTTCAGGTTTCT
* *
25864251 TCTTTTCAGCCAACTTCAGTTTTGGTACCGTCTCAGCTTCAGCTTCAGCTTC
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* * *
25864303 AACCAACTTTGTTTTTGGCACCTTTTGCTCAGCAC-TTTCCTCCTTGGGTACCTCTTCATGTTTC
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCA--ACGTTTCCTCCTTGGGTACCTCTTCAGGTTTC
* * * * *
25864367 TTGTTTTCAGCCAACATCAGTTTAGGTACCTTCTCTGCTTCAGCTTCAGCATG
64 TTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* * * * *
25864420 GACCAACTTTGGTTTTGGGACCTCTTGCTCAACACTTTCCACCTTGGGTACCTCTTCAGATTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
*
25864485 TCGTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC-T----TT-
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* * *
25864531 GACCAACTTTGGTTTTGGCAACTTTTGCTCAAAGGTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTC-AACGTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* *
25864596 TCTTTTCAAG-CAATATCAATTTTGGTACC-T-T---C-TCAGCTTCAGCTTC
65 TCTTTTC-AGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* * *
25864642 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGCTACCTCTTCAAGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * * * **
25864707 TCTTTGCAGCCATCATCTGTTTTGGTACCTTCTCAGGTTCAGCCTTC-TTTTC
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG-CTTCAGCTTC
* * * * * *
25864759 GACCAACTTTGGTTTGGGCATCTTTTGCTGAACGCTTTCCT-C--GGTTACCTCTTTAGGATTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACG-TTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* *
25864821 TCTTTTCAGACAACATCAGTTTTGGTA-CTT-T---C-TCAGCTTCAGCATC
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* * *
25864867 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTTCTCCTTGGGTACCTCTTTAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
*
25864932 TCTTTTCCGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC-T----TT-
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* *
25864978 GACCAACTTTGGTTTTGGCAACTTTTGCTCAACGCTTTCCTCCTTGGGTAACTCTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACG-TTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * **
25865043 TCTTTTCAACC-ACTATCAATTGCGGTACCTTCT---CTT---CTTCAGCTTC
65 TCTTTTCAGCCAAC-ATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* * * * *
25865089 GACCAACTGTGGTTTTGGTACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCCTCAAGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
** * * * ***
25865154 TCAGTTCAGCCATCATCTGTTTTGGTACCTTCTCAGCCTCAGCTTCCTTTTC
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* * * * *
25865206 GACCAACTTTGGTTTGGGCACCTTTTGCTCAATGCTGTCGTCCTTGGTTACCTCTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACG-TTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* *
25865271 TCTTTTCAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATC
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* * ** *
25865323 GACCAGCTTTGGTTTTGGGC-CCTTTTGCTCAACGTTTTCCTCCATCTGTACCTCTTCATGTTTC
1 GACCAACTTTGGTTTT-GGCACCTTTTGCTCAACG-TTTCCTCCTTGGGTACCTCTTCAGGTTTC
** *
25865387 TTCTTTTCAGCCAATTTCAGTTTTGGTACCTTCTCATCTTCAGCTGCAACTTCAGCCTCCTTTTC
64 TTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCA---G---CTTCAG----C--TTC
* * *
25865452 GATCAACTTCT-GTTTTCGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTC
1 GACCAACTT-TGGTTTTGGCACCTTTTGCTCAACG-TTTCCTCCTTGGGTACCTCTTCAGGTTTC
* * *
25865516 TTCTTTTCTGCCAACATCAGTTTTGGTA-CTT-T---C-TCGGTTTCAGCTTC
64 TTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* * * * ** * *
25865563 TACCAACTTTAGTTTTGGCGCCTTTTGCTCAACGCTTTCCTCCATCTGTTCCTCTTCATGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACG-TTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* ** *
25865628 TCTTTTCAGCTAATTTCAGTTTTGGTACCTTCTCATCTTCAGCTGCAACTTCAGCCTCCTTTTC
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCA---G---CTTCAG----C--TTC
** *
25865692 GACCAACTTCT-GTTTTGTTACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTC
1 GACCAACTT-TGGTTTTGGCACCTTTTGCTCAACG-TTTCCTCCTTGGGTACCTCTTCAGGTTTC
*
25865756 TTCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTCAGCTTCA---T---CTTC
64 TTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* * * * * * *
25865803 GACCAACTTTTGTTTTGGCACATTTTTCTCAACACTTTCCTCCTTGGGCT-GCTCATCAAGTTTC
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGG-TACCTCTTCAGGTTTC
* * *
25865867 TTCTTTTCAGCCAAAATCAGTTTTGATACCTTCTCAGCTTCAGCCTC--CTTTAC
64 TTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC-TT-C
* * * * * *
25865920 TACTAACTTTGGTTTTGGCACCTTTTGCTCAATGCTTTTCTCCTTGGTTACATCTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACG-TTTCCTCCTTGGGTACCTCTTCAGGTTTCT
** *
25865985 TCTTTTCAGCCAATGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATC
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* *
25866037 GACCAGCTTTGGTTTTGGCCCCTTTTGCTCAACG-------C-T---TACCTCTTCAGGTTTCTT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *
25866091 CTTTTCAGCCAACTTTAGTTTTGGTACCTTCTCGGCTTCAGCTTCAGTCTCCTTTTC
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAG----C--TTC
* *
25866148 GACCAACTTTGGTTTTGGCACCATTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * *
25866213 T-TGTTTCAGCCAACTTCTGTTTTGGTACATTCTCAGCTTCAGCTTCAGCTTC
65 TCT-TTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
* ** * ** * * * * * ** *** *
25866265 -AGCTTCGGTCTCCTTTTCG-ACCAATTTTGGTTTTGGCACCTTTTGCTCAATACTTTCCTC--C
1 GACCAAC--TTTGGTTTTGGCACC--TTTT-G--CT--CAACGTTTCCTCCTTGGGTACCTCTTC
* * * **** * * ** * * *
25866326 ATGGGTAC--CTCTTCAGGTTTCTTC--TTTTCG-ACCAACTTCAGTTTTGGTACCTTCTTAGCT
57 A-GGTTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTC-TCAG-CTT--CAGCTTC--AGCT
25866386 TC
115 TC
* ** * * * ** * *
25866388 -AGCTTCAGCTTCAG-TTTGAATCTCCTTTCCGAC-CAAC-TTTGGT-GTT-GGCACCATTTCCT
1 GA-C--CAACTTTGGTTTTG--GCACCTTT-TG-CTCAACGTTTCCTCCTTGGGTACC---T-CT
* * * * * **** ** ** * *
25866447 CCTTGGGTAC--CTCTTCAGGTTTC-T-TTTTTTCCATGACCTTCAGTTTTATTACATTCTCAGC
55 TC-AGGTTTCTTCTTTTCAGCCAACATCAGTTTT-GGT-ACCTTC----TCA--GC--T-TCAGC
25866508 TTCAGCTTCAACCTCCTTTTC
108 TTCAG----------C--TTC
* * * *
25866529 GACCAACTTTGGTTTTGGCACCATTTGCTCAACACTTTCCT-CTCTGTGTACCTCTTCAGGTTTA
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCT-TGGGTACCTCTTCAGGTTTC
* * * *
25866593 TTCTTTTCAGCAAACTTCAGTTTTGGTACATTCTCGGCTTCAGCTTCAGCCTCAGCCTCCTTTAC
64 TTCTTTTCAGCCAACATCAGTTTTGGTAC---CT--TC-TCAGCTTCAGCTTCAG----C-TT-C
* * * * * *
25866658 GACCAACTCTGGTTTTGGTACCTTTTGCTGAACACTTTCCTCCTTGGATACCTCATCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * * *
25866723 TCTTTTCGGCCAACTTCAGTTTTGGTACATTCTCAGCTTTAGCTTCAGCTCCAGCCTCCTTTTC
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCT---C---AGCTTCAGCTTCAG----C--TTC
* * * *
25866787 AACCAACTTTGGTTTTGGTACCATTTGCTCTACACG-TTCCT-C--AGGTACCTCTTCCA-GTTT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTC-A-ACGTTTCCTCCTTGGGTACCTCTT-CAGGTTT
* * **
25866847 CTTCTTTTCAGCAAACTTCAGTTTTGGTAAATTCTCAGCTTCAGCTTTAGCCTCAGCCTCCTTTT
63 CTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC--T----TCAG----C--TT
25866912 C
116 C
* * * * *
25866913 GACCAACTTTGGTTTCGGCACCTTTTGCTCAACACTTTCCTCCATGGATACCTCTTGAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * * *
25866978 TCTTTTC-GACCAACTTCAGTTTTTGTACCTTCTCAGTTTCAGTTTCAGTTTCCTTTTC
65 TCTTTTCAG-CCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAG----C--TTC
* * * * * * *
25867036 AACTAGA-TTTGGTTTTGGCACCATTTGCTTGATAC-TTTCCTCCCTGGGCACCTCTTTAGGTTT
1 GACCA-ACTTTGGTTTTGGCACCTTTTGC-TCA-ACGTTTCCTCCTTGGGTACCTCTTCAGGTTT
* ** * * *** *
25867099 CTTCTTTTCGGCCAAGTTCAGTTTTGGTACATTCTCAGCTTCAGCCTCCTTTTT
63 CTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
*
25867153 GACCAACTTTGGTTTTGGCACCATTTTG-TCTATAC-TTTTCTCCTTGGGTACCTCTTCAGGTTT
1 GACCAACTTTGGTTTTGGCACC-TTTTGCTC-A-ACGTTTCCTCCTTGGGTACCTCTTCAGGTTT
* * ** ** * * * ***
25867216 CCTCTTTTCAGCAAAGTTCAGTTTTGGTAAATTTTCTGCTTCAGCCTCCTTTTC
63 CTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
** * * * * *
25867270 -AGCCATGTTTGGTTTTGTCACCTTTTGCTCAACACTTTCCTCCGTGGGCACATCTTCAGGTTTC
1 GA-CCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTC
* * * * *
25867334 TTATTTTCGGCCAACTTCAGTTCTGGTACCTTCTCAGCTTCAG-TCTC--CTTTT
64 TTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCT-TCAGC-TTC
* * * * * *
25867386 GAGCCATCTTTGGTTCTGGCACCATTTGCTCAACACTTTTCTCCTCGGGTACCTCTTCAGGTTTC
1 GA-CCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTC
* * ** * * *
25867451 TTCTTTTCAGCAAACTTCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCC
64 TTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCA-GCTTC
***** ** * * *
25867505 TTTTGGAC-CAGCTTTT-GCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTC
1 -GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTC
* ** * ***
25867568 TTCTTTTCAGCCAACTTCAGTTTCAGTACCTCCTCAGCTTCAG-TCTCCTTTTC
64 TTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCT-TCAGCTTC
* *** * * * *
25867621 AACTGGCTTTGGTTTTGGCACCATTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCGGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * * *
25867686 TCTCTTCTGCCAACTTCAGTTTTGATACCTT-TGCAGCTTCAGCTTCAGCTTC
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCT-CAGCTTCAGCTTCAGCTTC
25867738 AGCTGCAGTT
Statistics
Matches: 2714, Mismatches: 483, Indels: 476
0.74 0.13 0.13
Matches are distributed among these distances:
105 66 0.02
106 3 0.00
107 4 0.00
108 45 0.02
109 4 0.00
110 13 0.00
111 565 0.21
112 16 0.01
113 8 0.00
114 42 0.02
115 7 0.00
116 31 0.01
117 1000 0.37
118 38 0.01
119 17 0.01
120 29 0.01
121 9 0.00
122 8 0.00
123 218 0.08
124 17 0.01
125 3 0.00
126 98 0.04
127 7 0.00
128 11 0.00
129 361 0.13
130 8 0.00
131 7 0.00
132 1 0.00
133 1 0.00
135 9 0.00
136 5 0.00
137 8 0.00
138 17 0.01
139 14 0.01
140 12 0.00
141 10 0.00
142 1 0.00
143 1 0.00
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.41
Consensus pattern (116 bp):
GACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTC
Found at i:25864595 original size:111 final size:111
Alignment explanation
Indices: 25864183--25866078 Score: 1701
Period size: 111 Copynumber: 16.4 Consensus size: 111
25864173 TTTCCTTATT
* * * * *
25864183 TTTGACCAGCTTTGGTTTTGGCACCTTTTGCTCAACG-TTTCCCTTCTTGGGTACCTTTTCAGGT
1 TTTGACCAACTTTGGTTTTGGCACCTTTTGCTCAAAGCTTT-CCTCCTTGGTTACCTCTTCAGGT
*
25864247 TTCTTCTTTTCAGCCAACTTCAGTTTTGGTACCGTCTCAGCTTCAGCTTCAGC
65 TTCTTCTTTTCAGCCAACATCAGTTTTGGTACC-T-T---C-TCAGCTTCAGC
** * * * *
25864300 TTCAACCAACTTTGTTTTTGGCACCTTTTGCTCAGCA-CTTTCCTCCTTGGGTACCTCTTCATGT
1 TTTGACCAACTTTGGTTTTGGCACCTTTTGCTCA-AAGCTTTCCTCCTTGGTTACCTCTTCAGGT
* * *
25864364 TTCTTGTTTTCAGCCAACATCAGTTTAGGTACCTTCTCTGCTTCAGC
65 TTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* * * *
25864411 TTCAGCATGGACCAACTTTGGTTTTGGGACCTCTTGCTCAACA-CTTTCCACCTTGGGTACCTCT
1 TT-----T-GACCAACTTTGGTTTTGGCACCTTTTGCTCAA-AGCTTTCCTCCTTGGTTACCTCT
* *
25864475 TCAGATTTCTTCGTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
59 TCAGGTTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* *
25864528 TTTGACCAACTTTGGTTTTGGCAACTTTTGCTCAAAGGTTTCCTCCTTGGTTACCTCTTCAGGTT
1 TTTGACCAACTTTGGTTTTGGCACCTTTTGCTCAAAGCTTTCCTCCTTGGTTACCTCTTCAGGTT
* *
25864593 TCTTCTTTTCAAG-CAATATCAATTTTGGTACCTTCTCAGCTTCAGC
66 TCTTCTTTTC-AGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* * *
25864639 TTCGACCAACTTTGGTTTTGGCACCTTTTGCTCAACA-CTTTCCTCCTTGGCTACCTCTTCAAGT
1 TTTGACCAACTTTGGTTTTGGCACCTTTTGCTCAA-AGCTTTCCTCCTTGGTTACCTCTTCAGGT
* * * *
25864703 TTCTTCTTTGCAGCCATCATCTGTTTTGGTACCTTCTCAGGTTCAGCCTTC
65 TTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG----C
* * * * *
25864754 TTTTCGACCAACTTTGGTTTGGGCATCTTTTGCTGAACGCTTTCCT-C--GGTTACCTCTTTAGG
1 -TTT-GACCAACTTTGGTTTTGGCACCTTTTGCTCAAAGCTTTCCTCCTTGGTTACCTCTTCAGG
* * *
25864816 ATTCTTCTTTTCAGACAACATCAGTTTTGGTACTTTCTCAGCTTCAGC
64 TTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* * * * *
25864864 ATCGACCAACTTTGGTTTTGGCACCTTTTGCTCAACA-CTTTTCTCCTTGGGTACCTCTTTAGGT
1 TTTGACCAACTTTGGTTTTGGCACCTTTTGCTCAA-AGCTTTCCTCCTTGGTTACCTCTTCAGGT
*
25864928 TTCTTCTTTTCCGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
65 TTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* * * *
25864975 TTTGACCAACTTTGGTTTTGGCAACTTTTGCTCAACGCTTTCCTCCTTGGGTAACTCTTCAGGTT
1 TTTGACCAACTTTGGTTTTGGCACCTTTTGCTCAAAGCTTTCCTCCTTGGTTACCTCTTCAGGTT
* * ** **
25865040 TCTTCTTTTCAACC-ACTATCAATTGCGGTACCTTCTCTTCTTCAGC
66 TCTTCTTTTCAGCCAAC-ATCAGTTTTGGTACCTTCTCAGCTTCAGC
* * * * * *
25865086 TTCGACCAACTGTGGTTTTGGTACCTTTTGCTCAACA-CTTTCCTCCTTGGGTACCTCCTCAAGT
1 TTTGACCAACTTTGGTTTTGGCACCTTTTGCTCAA-AGCTTTCCTCCTTGGTTACCTCTTCAGGT
** * * *
25865150 TTCTTCAGTTCAGCCATCATCTGTTTTGGTACCTTCTCAGCCTCAGCTTCC
65 TTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG----C
* * * *
25865201 TTTTCGACCAACTTTGGTTTGGGCACCTTTTGCTCAATGCTGTCGTCCTTGGTTACCTCTTCAGG
1 -TTT-GACCAACTTTGGTTTTGGCACCTTTTGCTCAAAGCTTTCCTCCTTGGTTACCTCTTCAGG
*
25865266 TTTCTTCTTTTCAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGC
64 TTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* * *
25865314 TTCAGCATCGACCAGCTTTGGTTTTGGGC-CCTTTTGCTCAACGTTTTCCTCCATCT-G-TACCT
1 TT-----T-GACCAACTTTGGTTTT-GGCACCTTTTGCTCAAAGCTTTCCTCC-T-TGGTTACCT
* ** *
25865376 CTTCATGTTTCTTCTTTTCAGCCAATTTCAGTTTTGGTACCTTCTCATCTTCAGC
57 CTTCAGGTTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* * *
25865431 TGCAACTTCAGCCTCCTTTTCGATCAACTTCT-GTTTTCGCACCTTTTGCTCAACGCTTTCCTCC
1 T-----TT--G-------A-C---CAACTT-TGGTTTTGGCACCTTTTGCTCAAAGCTTTCCTCC
* * * *
25865495 TTGGTTACCTCTTCAGGTTTCTTCTTTTCTGCCAACATCAGTTTTGGTACTTTCTCGGTTTCAGC
47 TTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* * * *
25865560 TTCT-ACCAACTTTAGTTTTGGCGCCTTTTGCTCAACGCTTTCCTCCATCT-GTT-CCTCTTCAT
1 TT-TGACCAACTTTGGTTTTGGCACCTTTTGCTCAAAGCTTTCCTCC-T-TGGTTACCTCTTCAG
* ** *
25865622 GTTTCTTCTTTTCAGCTAATTTCAGTTTTGGTACCTTCTCATCTTCAGC
63 GTTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* ** *
25865671 TGCAACTTCAGCCTCCTTTTCGACCAACTTCT-GTTTTGTTACCTTTTGCTCAACGCTTTCCTCC
1 T-----TT--G-------A----CCAACTT-TGGTTTTGGCACCTTTTGCTCAAAGCTTTCCTCC
* *
25865735 TTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTCAGCTTCATC
47 TTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* * * * * * * *
25865800 TTCGACCAACTTTTGTTTTGGCACATTTTTCTCAACA-CTTTCCTCCTTGGGCT-GCTCATCAAG
1 TTTGACCAACTTTGGTTTTGGCACCTTTTGCTCAA-AGCTTTCCTCCTT-GGTTACCTCTTCAGG
* *
25865863 TTTCTTCTTTTCAGCCAAAATCAGTTTTGATACCTTCTCAGCTTCAGCC
64 TTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG-C
* * * *
25865912 TCCTTTACTACTAACTTTGGTTTTGGCACCTTTTGCTCAATGCTTTTCTCCTTGGTTACATCTTC
1 T--TTGAC--C-AACTTTGGTTTTGGCACCTTTTGCTCAAAGCTTTCCTCCTTGGTTACCTCTTC
**
25865977 AGGTTTCTTCTTTTCAGCCAATGTCAGTTTTGGTACCTTCTCAGCTTCAGC
61 AGGTTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
* * * *
25866028 TTCAGCATCGACCAGCTTTGGTTTTGGCCCCTTTTGCTCAACGCTTACCTC
1 TT-----T-GACCAACTTTGGTTTTGGCACCTTTTGCTCAAAGCTTTCCTC
25866079 TTCAGGTTTC
Statistics
Matches: 1469, Mismatches: 203, Indels: 214
0.78 0.11 0.11
Matches are distributed among these distances:
108 35 0.02
109 2 0.00
110 8 0.01
111 609 0.41
112 17 0.01
113 2 0.00
114 57 0.04
115 4 0.00
116 13 0.01
117 515 0.35
118 10 0.01
119 2 0.00
120 2 0.00
122 2 0.00
124 2 0.00
125 1 0.00
126 1 0.00
127 2 0.00
128 8 0.01
129 175 0.12
130 2 0.00
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.41
Consensus pattern (111 bp):
TTTGACCAACTTTGGTTTTGGCACCTTTTGCTCAAAGCTTTCCTCCTTGGTTACCTCTTCAGGTT
TCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC
Found at i:25864627 original size:228 final size:229
Alignment explanation
Indices: 25864185--25867735 Score: 2507
Period size: 234 Copynumber: 15.0 Consensus size: 229
25864175 TCCTTATTTT
* * * * *
25864185 TGACCAGCTTTGGTTTTGGCACCTTTTGCTCAAC-GTTTCCCTTCTTGGGTACCTTTTCAGGTTT
1 TGACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTT-CCTCCTTGGGTACCTCTTCAGATTT
* * *
25864249 CTTCTTTTCAGCCAACTTCAGTTTTGGTACCGTCTCAGCTTCAG-CTTCAGCTTCAACCAACTTT
65 CTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTT----TTCGACCAACTTT
* * * * * *
25864313 GTTTTTGGCACCTTTTGCTCAGCACTTTCCTCCTTGGGTACCTCTTCATGTTTCTTGTTTTCAGC
126 GGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGC
* * *
25864378 CAACATCAGTTTAGGTACCTTCTCTGCTTCAGCTTCAGC
191 CAATATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
* * *
25864417 ATGGACCAACTTTGGTTTTGGGACCTCTTGCTCAACACTTTCCACCTTGGGTACCTCTTCAGATT
1 -T-GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGATT
*
25864482 TCTTCGTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG-C-TTT-GACCAACTTTGGT
64 TCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTTTTCGACCAACTTTGGT
* * *
25864544 TTTGGCAACTTTTGCTCAAAGGTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAAG-CA
129 TTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTC-AGCCA
*
25864608 ATATCAATTTTGGTACCTTCTCAGCTTCAGCTT---C
193 ATATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
*
25864642 -GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGCTACCTCTTCA-AGTTT
1 TGACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGA-TTT
* * * *
25864705 CTTCTTTGCAGCCATCATCTGTTTTGGTACCTTCTCAGGTTCAGCCTTCTTTTCGACCAACTTTG
65 CTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG-C--CTTTTCGACCAACTTTG
* * * * * *
25864770 GTTTGGGCATCTTTTGCTGAACGCTTTCCT-C--GGTTACCTCTTTAGGATTCTTCTTTTCAGAC
127 GTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCC
* * *
25864832 AACATCAGTTTTGGTACTTTCTCAGCTTCAG---CATC
192 AATATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
* * *
25864867 -GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTTCTCCTTGGGTACCTCTTTAGGTTTC
1 TGACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGATTTC
*
25864931 TTCTTTTCCGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG-C-TTT-GACCAACTTTGGTTT
66 TTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTTTTCGACCAACTTTGGTTT
* * * * *
25864993 TGGCAACTTTTGCTCAACGCTTTCCTCCTTGGGTAACTCTTCAGGTTTCTTCTTTTCAACCACTA
131 TGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAATA
* ** **
25865058 TCAATTGCGGTACCTTCTCTTCTTCAGCTT---C
196 TCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
* * *
25865089 -GACCAACTGTGGTTTTGGTACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCCTCA-AGTTT
1 TGACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGA-TTT
** * * *
25865152 CTTCAGTTCAGCCATCATCTGTTTTGGTACCTTCTCAGCCTCAGCTTCCTTTTCGACCAACTTTG
65 CTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG---CCTTTTCGACCAACTTTG
* * * *
25865217 GTTTGGGCACCTTTTGCTCAATGCTGTCGTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCC
127 GTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCC
**
25865282 AACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
192 AATATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
* ** * **
25865320 ATCGACCAGCTTTGGTTTTGGGC-CCTTTTGCTCAACGTTTTCCTCCATCTGTACCTCTTCATG-
1 -T-GACCAACTTTGGTTTT-GGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCA-GA
**
25865383 TTTCTTCTTTTCAGCCAATTTCAGTTTTGGTACCTTCTCATCTTCAGCTGCAACTTCAGCCTCCT
62 TTTCTTCTTTTCAGCCAACATCAGTTTTGGTA-C--CT--TC-TCA---G---CTTCAG---CCT
* *
25865448 TTTCGATCAACTTCT-GTTTTCGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGG
112 TTTCGACCAACTT-TGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGG
* * * * *
25865512 TTTCTTCTTTTCTGCCAACATCAGTTTTGGTACTTTCTCGGTTTCAGCTT---C
176 TTTCTTCTTTTCAGCCAATATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
* * * * ** *
25865563 T-ACCAACTTTAGTTTTGGCGCCTTTTGCTCAACGCTTTCCTCCATCTGTTCCTCTTCATG-TTT
1 TGACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCA-GATTT
* **
25865626 CTTCTTTTCAGCTAATTTCAGTTTTGGTACCTTCTCATCTTCAGCTGCAACTTCAGCCTCCTTTT
65 CTTCTTTTCAGCCAACATCAGTTTTGGTA-C--CT--TC-TCA---G---CTTCAG---CCTTTT
**
25865691 CGACCAACTTCT-GTTTTGTTACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTT
115 CGACCAACTT-TGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTT
*
25865755 CTTCTTTTCAGCCAACT-TCAGTTTTGGTACCTTCTCAGCTTCATCTT---C
179 CTTCTTTTCAGCCAA-TATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
* * * * *
25865803 -GACCAACTTTTGTTTTGGCACATTTTTCTCAACACTTTCCTCCTTGGGCT-GCTCATCA-AGTT
1 TGACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGG-TACCTCTTCAGA-TT
* * * *
25865865 TCTTCTTTTCAGCCAAAATCAGTTTTGATACCTTCTCAGCTTCAGCCTCCTTTACTACTAACTTT
64 TCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCT--TTT-CGACCAACTTT
* * *
25865930 GGTTTTGGCACCTTTTGCTCAATGCTTTTCTCCTTGGTTACATCTTCAGGTTTCTTCTTTTCAGC
126 GGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGC
*
25865995 CAATGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
191 CAATATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
* * * *
25866034 ATCGACCAGCTTTGGTTTTGGCCCCTTTTGCTC-A-A-----C-GC-T---TACCTCTTCAGGTT
1 -T-GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGATT
* *
25866087 TCTTCTTTTCAGCCAACTTTAGTTTTGGTACCTTCTCGGCTTCAGCTTCAGTCTCCTTTTCGACC
64 TCTTCTTTTCAGCCAACATCAGTTTTGGTACC-T-T---C-TCAGCTTCAG---CCTTTTCGACC
* * *
25866152 AACTTTGGTTTTGGCACCATTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT-TG
120 AACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCT-
* *
25866216 TTTCAGCCAACT-TCTGTTTTGGTACATTCTCAGCTTCAGCTTCAGCTTCAGCTTCGGTCTCC
184 TTTCAGCCAA-TATCAGTTTTGGT--A----C--CTT---C-TCAGCTTCAGCTTCAG----C
* * * *
25866278 TTTTCGACCAATTTTGGTTTTGGCACCTTTTGCTCAATACTTTCCTCCATGGGTACCTCTTCAGG
1 ---T-GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGA
* * ***
25866343 TTTCTTCTTTTC-GACCAACTTCAGTTTTGGTACCTTCTTAGCTTCAG-CTTCAGCTTCAGTTTG
62 TTTCTTCTTTTCAG-CCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTT----TTC-G-ACC
* ** * * * * *
25866406 AA-TCTCCTTTCCGACCAACTTTGGTGTTGGC-AC-CATTTCCTCCTTGGGTACCTCTTCAGGTT
120 AACTTTGGTTT-TG-GCACCTTT--TGCT--CAACGC-TTTCCTCCTTGGTTACCTCTTCAGGTT
* ** * *
25866468 TCTTTTTTTCCATGACC--T-TCAGTTTTATTACATTCTCAGCTTCAGCTTCAACCTCC
178 TCTTCTTTT-CA-G-CCAATATCAGTTTTGGTACCTTCTCAGCTTCAGCTTC-A---GC
* *
25866524 TTTTCGACCAACTTTGGTTTTGGCACCATTTGCTCAACACTTTCCT-CTCTGTGTACCTCTTCAG
1 ---T-GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCT-TGGGTACCTCTTCAG
* * * * *
25866588 GTTTATTCTTTTCAGCAAACTTCAGTTTTGGTACATTCTCGGCTTCAGCTTCAGCCTCAGCCTCC
61 ATTTCTTCTTTTCAGCCAACATCAGTTTTGGT--A----C--CTT---C-TCAGCTTCAGCCT--
* * * * * *
25866653 TTTACGACCAACTCTGGTTTTGGTACCTTTTGCTGAACACTTTCCTCCTTGGATACCTCATCAGG
112 TTT-CGACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGG
* * *
25866718 TTTCTTCTTTTCGGCCAACT-TCAGTTTTGGTACATTCTCAGCTTTAGCTTCAGC
176 TTTCTTCTTTTCAGCCAA-TATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
* * * * *
25866772 TCCAGCCTCCTTTTCAACCAACTTTGGTTTTGGTACCATTTGCTCTACACGTTCCT-C--AGGTA
1 T---G-----------ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTA
* * *
25866834 CCTCTTCCAG-TTTCTTCTTTTCAGCAAACTTCAGTTTTGGTAAATTCTCAGCTTCAGCTTTAGC
52 CCTCTT-CAGATTTCTTCTTTTCAGCCAACATCAGTTTTGGT--A----C--CTT---C-TCAGC
* * * * *
25866898 CTCAGCCTCCTTTTCGACCAACTTTGGTTTCGGCACCTTTTGCTCAACACTTTCCTCCATGGATA
104 TTCAG---CCTTTTCGACCAACTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTA
* * * *
25866963 CCTCTTGAGGTTTCTTCTTTTC-GACCAACT-TCAGTTTTTGTACCTTCTCAGTTTCAGTTTCAG
166 CCTCTTCAGGTTTCTTCTTTTCAG-CCAA-TATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAG
25867026 TTTCC
229 ----C
*** * ** * * * * *
25867031 TTTTCAACTAGATTTGGTTTTGGCACCATTTGCTTGATACTTTCCTCCCTGGGCACCTCTTTAGG
1 TGACCAAC----TTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGA
* ** * *
25867096 TTTCTTCTTTTCGGCCAAGTTCAGTTTTGGTACATTCTCAGCTTCAGCCTCCTTTTTGACCAACT
62 TTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG---CCTTTTCGACCAACT
* ** * * *
25867161 TTGGTTTTGGCACCATTTTG-TCTATACTTTTCTCCTTGGGTACCTCTTCAGGTTTCCTCTTTTC
124 TTGGTTTTGGCACC-TTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTC
* ** * * * ***
25867225 AGCAAAGT-TCAGTTTTGGTAAATTTTCTGCTTCAGCCTCCTTT
188 AGCCAA-TATCAGTTTTGGTACCTTCTCAGCTTCAG-CTTCAGC
* ** * * * * *
25867268 TCAGCCATGTTTGGTTTTGTCACCTTTTGCTCAACACTTTCCTCCGTGGGCACATCTTCAGGTTT
1 TGA-CCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGATTT
* * * * *
25867333 CTTATTTTCGGCCAACTTCAGTTCTGGTACCTTCTCAGCTTCAGTCTCCTTTT-GAGCCATCTTT
65 CTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG---CCTTTTCGA-CCAACTTT
* * * * * *
25867397 GGTTCTGGCACCATTTGCTCAACACTTTTCTCCTCGGGTACCTCTTCAGGTTTCTTCTTTTCAGC
126 GGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGC
* ** * *
25867462 AAACT-TCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCC
191 CAA-TATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCA-GC
* *
25867502 T--CC--TTTTGGACCAGCTTTT-GCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCA
1 TGACCAACTTT-G----G-TTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCA
* * ** * * ***
25867562 GGTTTCTTCTTTTCAGCCAACTTCAGTTTCAGTACCTCCTCAGCTTCAGTCTCCTTTTCAACTGG
60 GATTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG---CCTTTTCGACCAA
* * * * * *
25867627 CTTTGGTTTTGGCACCATTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCGGGTTTCTTCTCTT
122 CTTTGGTTTTGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTT
* *
25867692 CTGCCAACT-TCAGTTTTGATACCTT-TGCAGCTTCAGCTTCAGC
187 CAGCCAA-TATCAGTTTTGGTACCTTCT-CAGCTTCAGCTTCAGC
25867735 T
1 T
25867736 TCAGCTGCAG
Statistics
Matches: 2758, Mismatches: 359, Indels: 402
0.78 0.10 0.11
Matches are distributed among these distances:
219 38 0.01
220 4 0.00
221 3 0.00
222 275 0.10
223 1 0.00
224 3 0.00
225 157 0.06
226 3 0.00
227 15 0.01
228 417 0.15
229 11 0.00
230 2 0.00
231 8 0.00
232 1 0.00
233 15 0.01
234 564 0.20
235 13 0.00
236 3 0.00
237 5 0.00
238 2 0.00
239 7 0.00
240 410 0.15
241 10 0.00
242 1 0.00
243 2 0.00
244 3 0.00
245 6 0.00
246 241 0.09
247 5 0.00
248 6 0.00
249 31 0.01
250 5 0.00
251 4 0.00
252 115 0.04
253 12 0.00
254 8 0.00
255 175 0.06
256 11 0.00
257 16 0.01
258 138 0.05
259 8 0.00
260 1 0.00
261 3 0.00
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.41
Consensus pattern (229 bp):
TGACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGATTTC
TTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTTTTCGACCAACTTTGGTTT
TGGCACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAATA
TCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGC
Found at i:25866256 original size:6 final size:6
Alignment explanation
Indices: 25866245--25866270 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
25866235 TGGTACATTC
25866245 TCAGCT TCAGCT TCAGCT TCAGCT TC
1 TCAGCT TCAGCT TCAGCT TCAGCT TC
25866271 GGTCTCCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.35
Consensus pattern (6 bp):
TCAGCT
Found at i:25867887 original size:24 final size:24
Alignment explanation
Indices: 25867859--25867916 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
25867849 CATCTTAGGC
*
25867859 TCTTGTTCTTCTTCTGGTTCTTG-T
1 TCTTGTTCTTCGTCTGGTTC-TGAT
* *
25867883 TCTTGCTCTTGGTCTGGTTCTGAT
1 TCTTGTTCTTCGTCTGGTTCTGAT
25867907 TCTTCGTTCT
1 TCTT-GTTCT
25867917 GTTCCTCAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 2 0.07
24 22 0.79
25 4 0.14
ACGTcount: A:0.02, C:0.22, G:0.19, T:0.57
Consensus pattern (24 bp):
TCTTGTTCTTCGTCTGGTTCTGAT
Found at i:25870361 original size:126 final size:127
Alignment explanation
Indices: 25870135--25870379 Score: 393
Period size: 126 Copynumber: 1.9 Consensus size: 127
25870125 GTTTTAGCCT
* *
25870135 TAAGAGAATATTCGAATATTCAAAACAAACAAAGAAAAGCGAAGCCCAGTACGTTAGGGCACGAT
1 TAAGAGAATATTCGAATATTCAAAACAAACAAAGAAAAGCGAAACCCAGTACGCTAGGGCACGAT
* *
25870200 TCTTCGAATTCTTTAAATACCGAACATTACCTTTATTTTGAAAATTTTTGAGAGTGAACTGG
66 TCTTCGAATTCTTTAAATACCAAACATTACCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
* * * *
25870262 TAAGAGGATATTCGAATATTCAAGACAAACAAAG-AAAGCGAAACTCAGTACGCTAGGGCATGAT
1 TAAGAGAATATTCGAATATTCAAAACAAACAAAGAAAAGCGAAACCCAGTACGCTAGGGCACGAT
* *
25870326 TCTTCGAATTCTTTAAATACTAAACATTGCCTTTATTTTGAAAAATTTTGAGAG
66 TCTTCGAATTCTTTAAATACCAAACATTACCTTTATTTTGAAAAATTTTGAGAG
25870380 AAGATCAATG
Statistics
Matches: 108, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
126 76 0.70
127 32 0.30
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (127 bp):
TAAGAGAATATTCGAATATTCAAAACAAACAAAGAAAAGCGAAACCCAGTACGCTAGGGCACGAT
TCTTCGAATTCTTTAAATACCAAACATTACCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
Found at i:25871298 original size:18 final size:18
Alignment explanation
Indices: 25871275--25871310 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
25871265 ATAACAAGTA
25871275 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
25871293 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
25871311 ACGGTTTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.61, T:0.22
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:25871326 original size:29 final size:30
Alignment explanation
Indices: 25871287--25871386 Score: 85
Period size: 37 Copynumber: 3.1 Consensus size: 30
25871277 GTGATGGAGG
*
25871287 TAGTGGGGGTGATGGAGGTAGTGGACGGTT
1 TAGTAGGGGTGATGGAGGTAGTGGACGGTT
* *
25871317 TAGTAGGGTGTGGGGGTGATAGAGGTAGTGGATGGTT
1 TAGTA-------GGGGTGATGGAGGTAGTGGACGGTT
* *
25871354 TAGTA-GGGTGATGGAGTTAGTGGTCGGTT
1 TAGTAGGGGTGATGGAGGTAGTGGACGGTT
25871383 TAGT
1 TAGT
25871387 GGAGTGTTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
29 24 0.43
30 4 0.07
37 28 0.50
ACGTcount: A:0.18, C:0.02, G:0.49, T:0.31
Consensus pattern (30 bp):
TAGTAGGGGTGATGGAGGTAGTGGACGGTT
Found at i:25871342 original size:37 final size:37
Alignment explanation
Indices: 25871289--25871363 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
25871279 GATGGAGGTA
*
25871289 GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAGGGT
1 GTGGGGGTGATAGAGGTAGTGGACGGTTTAGTAGGGT
*
25871326 GTGGGGGTGATAGAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATAGAGGTAGTGGACGGTTTAGTAGGGT
25871363 G
1 G
25871364 ATGGAGTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.17, C:0.01, G:0.53, T:0.28
Consensus pattern (37 bp):
GTGGGGGTGATAGAGGTAGTGGACGGTTTAGTAGGGT
Found at i:25879719 original size:87 final size:87
Alignment explanation
Indices: 25879573--25879749 Score: 354
Period size: 87 Copynumber: 2.0 Consensus size: 87
25879563 CTGCCTCTTC
25879573 AAAGTTATTTTGTCACAATATGAAGAAAGAGCAAAATGGTTTAGTGGATCATCATTTCCAATACC
1 AAAGTTATTTTGTCACAATATGAAGAAAGAGCAAAATGGTTTAGTGGATCATCATTTCCAATACC
25879638 AATTACCTCGAATAATATAATT
66 AATTACCTCGAATAATATAATT
25879660 AAAGTTATTTTGTCACAATATGAAGAAAGAGCAAAATGGTTTAGTGGATCATCATTTCCAATACC
1 AAAGTTATTTTGTCACAATATGAAGAAAGAGCAAAATGGTTTAGTGGATCATCATTTCCAATACC
25879725 AATTACCTCGAATAATATAATT
66 AATTACCTCGAATAATATAATT
25879747 AAA
1 AAA
25879750 TTTAATTATG
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 90 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (87 bp):
AAAGTTATTTTGTCACAATATGAAGAAAGAGCAAAATGGTTTAGTGGATCATCATTTCCAATACC
AATTACCTCGAATAATATAATT
Found at i:25882528 original size:7 final size:7
Alignment explanation
Indices: 25882488--25882541 Score: 51
Period size: 6 Copynumber: 7.9 Consensus size: 7
25882478 AAATGAAAAC
25882488 ATTAAAT
1 ATTAAAT
25882495 -TTAAAT
1 ATTAAAT
25882501 -TTAAA-
1 ATTAAAT
* *
25882506 ATAAAAA
1 ATTAAAT
25882513 ATTATAAT
1 ATTA-AAT
25882521 ATTAAAT
1 ATTAAAT
25882528 ATTTAAAT
1 A-TTAAAT
25882536 ATTAAA
1 ATTAAA
25882542 AAATACTTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
6 15 0.38
7 12 0.30
8 13 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
ATTAAAT
Found at i:25882725 original size:22 final size:21
Alignment explanation
Indices: 25882700--25882755 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
25882690 AATTTAACAA
25882700 AAAATTTTAAAATATTTTTTAT
1 AAAATTTTAAAATATTTTTT-T
*
25882722 AAAATTATAATATATATTTTTTT
1 AAAATTTTAA-A-ATATTTTTTT
25882745 -AAATTTTAAAA
1 AAAATTTTAAAA
25882756 AGTCAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 1 0.03
21 1 0.03
22 17 0.57
23 2 0.07
24 9 0.30
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
AAAATTTTAAAATATTTTTTT
Found at i:25886760 original size:46 final size:46
Alignment explanation
Indices: 25886742--25886848 Score: 130
Period size: 46 Copynumber: 2.3 Consensus size: 46
25886732 TGACAAGTGG
* * *
25886742 AAAGTGATAAGTAATAGCT-TCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
*
25886788 AAAGTGATAAGTGATAGCT-TCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
*
25886834 -AAGTGAAAAGTGATA
1 AAAGTGATAAGTGATA
25886849 AGTGATAGCT
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
45 14 0.24
46 44 0.76
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTATAGCTACACTTATCTGATCAAGTGAC
Done.