Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 75 of 318
Found at i:25886761 original size:52 final size:51
Alignment explanation
Indices: 25886690--25886865 Score: 254
Period size: 52 Copynumber: 3.5 Consensus size: 51
25886680 ATCAAGTGAC
* **
25886690 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGT-G
* *
25886742 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
25886788 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
25886839 AAAAGTGATAAGTGATAGCTTCGGCTA
1 -AAAGTGATAAGTGATAGCTTCGGCTA
25886866 TACTATAATC
Statistics
Matches: 111, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
46 44 0.40
52 67 0.60
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:25886796 original size:98 final size:98
Alignment explanation
Indices: 25886676--25886869 Score: 343
Period size: 98 Copynumber: 2.0 Consensus size: 98
25886666 TTTGAGTACT
* *
25886676 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
25886741 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
*
25886774 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
25886839 AAAAGTGATAAGTGATAGCTTCGGCTATACT
66 AAAAGTGATAAGTAATAGCTTCGGCTATACT
25886870 ATAATCATAA
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.29
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:25896366 original size:25 final size:26
Alignment explanation
Indices: 25896313--25896367 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
25896303 AGTGTTTTTT
25896313 ATTTT-CTTCTGTCTATTCTCTACTC
1 ATTTTACTTCTGTCTATTCTCTACTC
* * *
25896338 -TTTTACTTCTTTCTATTGT-TAGTC
1 ATTTTACTTCTGTCTATTCTCTACTC
25896362 ATTTTA
1 ATTTTA
25896368 AAGAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.15, C:0.20, G:0.05, T:0.60
Consensus pattern (26 bp):
ATTTTACTTCTGTCTATTCTCTACTC
Found at i:25916703 original size:24 final size:24
Alignment explanation
Indices: 25916672--25916723 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
25916662 AATTGATTTA
25916672 AAAGAACACCTAGCTGTTTCAGCT
1 AAAGAACACCTAGCTGTTTCAGCT
25916696 AAAGAACACCTAGCTGTTTCAGCT
1 AAAGAACACCTAGCTGTTTCAGCT
25916720 AAAG
1 AAAG
25916724 CTTGAGTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (24 bp):
AAAGAACACCTAGCTGTTTCAGCT
Found at i:25923282 original size:12 final size:12
Alignment explanation
Indices: 25923265--25923289 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25923255 CAACATCATT
25923265 ACCGTCACCGGC
1 ACCGTCACCGGC
25923277 ACCGTCACCGGC
1 ACCGTCACCGGC
25923289 A
1 A
25923290 TTTGCATCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.48, G:0.24, T:0.08
Consensus pattern (12 bp):
ACCGTCACCGGC
Found at i:25927843 original size:18 final size:18
Alignment explanation
Indices: 25927820--25927856 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
25927810 ATATTCATGT
*
25927820 TTTCAGAAAGTTCTTGTG
1 TTTCAGAAAGTTCTCGTG
25927838 TTTCAGAAAGTTCTCGTG
1 TTTCAGAAAGTTCTCGTG
25927856 T
1 T
25927857 CTCCAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.43
Consensus pattern (18 bp):
TTTCAGAAAGTTCTCGTG
Found at i:25930187 original size:201 final size:200
Alignment explanation
Indices: 25929504--25930468 Score: 1262
Period size: 201 Copynumber: 4.9 Consensus size: 200
25929494 GCGGTGATCT
* * * * *
25929504 TAACTGCTCCATTCTACTAATATCTTCCCTAATTGG-CAACTCGGCAGCTGGAGCAGTGAGAATC
1 TAACTGCTCCGTTCTACCAATATCTT-CCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAATC
* * * * ** * * * *
25929568 ACAGTCTTGCGTCTATTCTTCCTCAAGGGGGATTGGTGTTCTGAAGTGATGGCAGACTTGGCCCT
65 ACAGTCTTGCGTCTGTTCCTCCTCGAGGGGGCTTCTTGTTGTGAAG-AAGGGCACACTTGGCCCT
* ** * **
25929633 CTCAACCTCACTCCTATCTTGTACAATTGCATCCAATTCTTCAGTTGTGCCTTTTCCTTGAAGCG
129 CTCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTTCCTACAAGCG
25929698 GTGCCT-
194 GTGCCTC
* *
25929704 TCAACTGCTCCG---------TATCTTCCTTATTTGCCAAATCTGCAGCTGGAGCAGTAAGAATC
1 T-AACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAATC
* *
25929760 ACAGTCTTGCGTCTGTTCCTCCTCGAGGGGGCATCTTGTTGTGAAGAAAGGGCACCCTTGGCCCT
65 ACAGTCTTGCGTCTGTTCCTCCTCGAGGGGGCTTCTTGTTGTGAAG-AAGGGCACACTTGGCCCT
*
25929825 CTCAACCTCACTACTATCTTCCACAATTGCATCCAATTCTTCAGTCGTG------CCTACAAGCG
129 CTCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTTCCTACAAGCG
25929884 GTGCCTC
194 GTGCCTC
* * *
25929891 TAACTGCTCCGTTCTACCAATATCTTCCTTATTTGCCAAATCTGCAACTGGAGCAGTAAGAATCA
1 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAATCA
* *
25929956 CAGTCTTGCGTCTGTTCCTCCTCAAGGGGGCTTCTTGTTGTGAAGAAAGGGCACCCTTGGCCCTC
66 CAGTCTTGCGTCTGTTCCTCCTCGAGGGGGCTTCTTGTTGTGAAG-AAGGGCACACTTGGCCCTC
* *
25930021 TCTACCTCACTACTATCTTCCACAATTGCATCCAATTCTTCAGTCGTGCCTTTTCCTACAAGCGG
130 TCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTTCCTACAAGCGG
25930086 TGCCTC
195 TGCCTC
*
25930092 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACCA
1 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAATCA
* ** * * *
25930157 CAGTTTTGCGTCTGCCCCTCCTCGAGGGGGCTTCTTGTTGTGAAGTAGCTGCATACTTGGCCCTC
66 CAGTCTTGCGTCTGTTCCTCCTCGAGGGGGCTTCTTGTTGTGAAGAAG-GGCACACTTGGCCCTC
* * *
25930222 TCGACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTCCCTACAACCGG
130 TCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTTCCTACAAGCGG
25930287 TGCCTC
195 TGCCTC
* * *
25930293 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGACCAAATCGACAGCTGGAGCAGTAAGAACCA
1 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAATCA
** * * * *
25930358 CAGTCTTGCGTCTGCCCCTCCTCGAGGGGGCTGCTTGTTGTGAAGTAGCTGCATACTTGGCCCTC
66 CAGTCTTGCGTCTGTTCCTCCTCGAGGGGGCTTCTTGTTGTGAAGAAG-GGCACACTTGGCCCTC
* *
25930423 TCGACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCGGTCG
130 TCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCG
25930469 AGCCCTTCCC
Statistics
Matches: 696, Mismatches: 50, Indels: 37
0.89 0.06 0.05
Matches are distributed among these distances:
186 24 0.03
187 1 0.00
191 7 0.01
192 128 0.18
195 154 0.22
200 3 0.00
201 379 0.54
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (200 bp):
TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAATCA
CAGTCTTGCGTCTGTTCCTCCTCGAGGGGGCTTCTTGTTGTGAAGAAGGGCACACTTGGCCCTCT
CAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTTCCTACAAGCGGT
GCCTC
Found at i:25930454 original size:402 final size:384
Alignment explanation
Indices: 25929504--25930468 Score: 1236
Period size: 387 Copynumber: 2.5 Consensus size: 384
25929494 GCGGTGATCT
* * * * * *
25929504 TAACTGCTCCATTCTACTAATATCTTCCCTAATTGGCAACTCGGCAGCTGGAGCAGTGAGAATCA
1 TAACTGCTCCGTTCTACCAATATCTT-CCTTATTGCCAAATC-GCAGCTGGAGCAGTAAGAATCA
* * * * * *
25929569 CAGTCTTGCGTCTATTCTTCCTCAAGGGGGATTG-GTGTTCTGAAGT-GATGGCAGACTTGGCCC
64 CAGTCTTGCGTCTGTTCCTCCTCAAGGGGG-CTGCTTGTTGTGAAGTAG-T-GCACACTTGGCCC
* ** * **
25929632 TCTCAACCTCACTCCTATCTTGTACAATTGCATCCAATTCTTCAGTTGTGCCTTTTCCTTGAAGC
126 TCTCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTTCCTACAAGC
* * *
25929697 GGTGCCTTCAACTGCTCCGTATCTTCCTTATTTGCCAAATCTGCAGCTGGAGCAGTAAGAATCAC
191 GGTGCCTTCAACTGCTCCGTATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACCAC
** *
25929762 AGTCTTGCGTCTGTTCCTCCTCGAGGGGGCATCTTGTTGTGAAGAAAGGGCACCCTTGGCCCTCT
256 AGTCTTGCGTCTGCCCCTCCTCGAGGGGGCATCTTGTTGTGAAGAAAGGGCACACTTGGCCCTCT
* *
25929827 CAACCTCACTACTATCTTCCACAATTGCATCCAATTCTTCAGTCGTGCCTACAAGCGGTGCCTC
321 CAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTACAACCGGTGCCTC
*
25929891 TAACTGCTCCGTTCTACCAATATCTTCCTTATTTGCCAAATCTGCAACTGGAGCAGTAAGAATCA
1 TAACTGCTCCGTTCTACCAATATCTTCCTTA-TTGCCAAATC-GCAGCTGGAGCAGTAAGAATCA
* * * *
25929956 CAGTCTTGCGTCTGTTCCTCCTCAAGGGGGCTTCTTGTTGTGAAGAAAGGGCACCCTTGGCCCTC
64 CAGTCTTGCGTCTGTTCCTCCTCAAGGGGGCTGCTTGTTGTGAAG-TAGTGCACACTTGGCCCTC
* *
25930021 TCTACCTCACTACTATCTTCCACAATTGCATCCAATTCTTCAGTCGTGCCTTTTCCTACAAGCGG
128 TCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTTCCTACAAGCGG
25930086 TGCC-TCTAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTA
193 TGCCTTC-AACTGCTCCG---------TATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTA
* * * * *
25930150 AGAACCACAGTTTTGCGTCTGCCCCTCCTCGAGGGGGCTTCTTGTTGTGAAG-TAGCTGCATACT
248 AGAACCACAGTCTTGCGTCTGCCCCTCCTCGAGGGGGCATCTTGTTGTGAAGAAAG-GGCACACT
*
25930214 TGGCCCTCTCGACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTCCCT
312 TGGCCCTCTCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTG------CCT
25930279 ACAACCGGTGCCTC
371 ACAACCGGTGCCTC
*
25930293 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGACCAAATCGACAGCTGGAGCAGTAAGAACCA
1 TAACTGCTCCGTTCTACCAATATCTTCCTTATTG-CCAAATCG-CAGCTGGAGCAGTAAGAATCA
** * *
25930358 CAGTCTTGCGTCTGCCCCTCCTCGAGGGGGCTGCTTGTTGTGAAGTAGCTGCATACTTGGCCCTC
64 CAGTCTTGCGTCTGTTCCTCCTCAAGGGGGCTGCTTGTTGTGAAGTAG-TGCACACTTGGCCCTC
* *
25930423 TCGACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCGGTCG
128 TCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCG
25930469 AGCCCTTCCC
Statistics
Matches: 502, Mismatches: 52, Indels: 33
0.86 0.09 0.06
Matches are distributed among these distances:
386 7 0.01
387 174 0.35
389 1 0.00
395 2 0.00
396 142 0.28
401 6 0.01
402 170 0.34
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (384 bp):
TAACTGCTCCGTTCTACCAATATCTTCCTTATTGCCAAATCGCAGCTGGAGCAGTAAGAATCACA
GTCTTGCGTCTGTTCCTCCTCAAGGGGGCTGCTTGTTGTGAAGTAGTGCACACTTGGCCCTCTCA
ACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTTCCTACAAGCGGTGC
CTTCAACTGCTCCGTATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACCACAGTCT
TGCGTCTGCCCCTCCTCGAGGGGGCATCTTGTTGTGAAGAAAGGGCACACTTGGCCCTCTCAACC
TCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTACAACCGGTGCCTC
Found at i:25930531 original size:162 final size:162
Alignment explanation
Indices: 25930328--25930784 Score: 659
Period size: 162 Copynumber: 2.8 Consensus size: 162
25930318 TCCTTATTGA
* * * *
25930328 CCAAATC-GACAGCTGGAGCAGTAAGAACCACAGTCTTGCGTCTGCCCCTCCTCGAGGGGGCTGC
1 CCAAATCGGA-AGCTAGAGCGGTAAGAGCCACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTGC
*
25930392 TTGTTGTGAAGTAGCTGCATACTTGGCCCTCTCGACCTCACTACTATCTTCAACAATTGCATCCA
65 TTGTTGTGAAGTAGCTGCATACTTGGCCCTCTCAACCTCACTACTATCTTCAACAATTGCATCCA
* *
25930457 ATTCTTCGGTCGAGCCCTTCCCTCCAACCGATG
130 ATTCTTCAGTCGAGCCCTTCCCTACAACCGATG
* * *
25930490 CCAAATCGGAAGCTAGATCGGTAAGAGCCACAGTCTTGCGTCTGCTCCTCCTCGAGTGGGCTTCT
1 CCAAATCGGAAGCTAGAGCGGTAAGAGCCACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTGCT
* * *
25930555 TGTTGTGAAGTTGCTGCATACTTGGCCCCCTCAACCTCACTACTATCTTCAATAATTGCATCCAA
66 TGTTGTGAAGTAGCTGCATACTTGGCCCTCTCAACCTCACTACTATCTTCAACAATTGCATCCAA
* *
25930620 TTCTTCAGTCGAGCCCTTCCCTACAGCCGGTG
131 TTCTTCAGTCGAGCCCTTCCCTACAACCGATG
* *
25930652 CCAAATCGGCAGCTGGAGCGGTAAGAGCCACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTG-
1 CCAAATCGGAAGCTAGAGCGGTAAGAGCCACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGC-TGC
* * * * * *
25930716 TTGTTGTGAAGTAAC-GACACACTTGACCTTCTCAACCTCACTACTCTCTTCAACAATTGCCTCC
65 TTGTTGTGAAGTAGCTG-CATACTTGGCCCTCTCAACCTCACTACTATCTTCAACAATTGCATCC
25930780 AATTC
129 AATTC
25930785 AGCACTCCTG
Statistics
Matches: 263, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
161 1 0.00
162 259 0.98
163 3 0.01
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.27
Consensus pattern (162 bp):
CCAAATCGGAAGCTAGAGCGGTAAGAGCCACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTGCT
TGTTGTGAAGTAGCTGCATACTTGGCCCTCTCAACCTCACTACTATCTTCAACAATTGCATCCAA
TTCTTCAGTCGAGCCCTTCCCTACAACCGATG
Found at i:25934668 original size:21 final size:21
Alignment explanation
Indices: 25934642--25934684 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
25934632 TCTATCTTAC
25934642 CTTATTCCATATTAATATTAA
1 CTTATTCCATATTAATATTAA
25934663 CTTATTCCATATTAATATTAA
1 CTTATTCCATATTAATATTAA
25934684 C
1 C
25934685 CTACATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (21 bp):
CTTATTCCATATTAATATTAA
Found at i:25937382 original size:54 final size:54
Alignment explanation
Indices: 25937324--25937431 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
25937314 ATACCTAATT
* *
25937324 ACTTTTAATTTATGCAAATTCACTTAACCGAAATCTAATTAACTACACAACTAG
1 ACTTTTAATTTATACAAATTCACTTAACCAAAATCTAATTAACTACACAACTAG
25937378 ACTTTTAATTTATACAAATTCACTTAACCAAAATCTAATTAACTACACAACTAG
1 ACTTTTAATTTATACAAATTCACTTAACCAAAATCTAATTAACTACACAACTAG
25937432 CTTCGTAAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.43, C:0.20, G:0.04, T:0.33
Consensus pattern (54 bp):
ACTTTTAATTTATACAAATTCACTTAACCAAAATCTAATTAACTACACAACTAG
Found at i:25940128 original size:26 final size:26
Alignment explanation
Indices: 25940097--25940151 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
25940087 TTCTAAAAAA
*
25940097 TTTACCAG-GGGCAAAATCGTTAAATT
1 TTTACC-GTGGGCAAAATCGTCAAATT
* *
25940123 TTTACCGTGGGTAAAATTGTCAAATT
1 TTTACCGTGGGCAAAATCGTCAAATT
25940149 TTT
1 TTT
25940152 TAGGGTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (26 bp):
TTTACCGTGGGCAAAATCGTCAAATT
Found at i:25942479 original size:47 final size:47
Alignment explanation
Indices: 25942405--25942674 Score: 334
Period size: 47 Copynumber: 5.7 Consensus size: 47
25942395 CACTAATGAA
* *
25942405 CAGAGAGCACTGAAGTGCT--ATA-CAGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCCAAT
* * * *
25942449 TAGATAGCAATGACGTGCTAAATATTAGAGAGCACAAATGTGCCAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCCAAT
25942496 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCCAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCCAAT
*
25942543 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCCAAT
* **** *
25942590 CAGAGAGCACTGACGTACT-AATATTCAGAGAGCACTGGCGTGCTAATAAT
1 CAGAGAGCACTGACGTGCTAAATA-TCAGAGAGCACAAATGTGC---CAAT
*
25942640 CAGAGAGCACTGACGTACT-AATATTCAGAGAGCAC
1 CAGAGAGCACTGACGTGCTAAATA-TCAGAGAGCAC
25942675 TGGCGTGCTA
Statistics
Matches: 203, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
44 15 0.07
46 7 0.03
47 142 0.70
50 39 0.19
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (47 bp):
CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCCAAT
Found at i:25942482 original size:25 final size:24
Alignment explanation
Indices: 25942405--25942698 Score: 257
Period size: 25 Copynumber: 12.4 Consensus size: 24
25942395 CACTAATGAA
*
25942405 CAGAGAGCACTGAAGTGCT-ATA-
1 CAGAGAGCACTGACGTGCTAATAT
** *
25942427 CAGAGAGCACAAATGTGCTAAT-T
1 CAGAGAGCACTGACGTGCTAATAT
* *
25942450 -AGATAGCAATGACGTGCTAAATAT
1 CAGAGAGCACTGACGTGCT-AATAT
* ** * *
25942474 TAGAGAGCACAAATGTGC-CA-AT
1 CAGAGAGCACTGACGTGCTAATAT
25942496 CAGAGAGCACTGACGTGCTAAATAT
1 CAGAGAGCACTGACGTGCT-AATAT
** * *
25942521 CAGAGAGCACAAATGTGC-CA-AT
1 CAGAGAGCACTGACGTGCTAATAT
25942543 CAGAGAGCACTGACGTGCTAAATAT
1 CAGAGAGCACTGACGTGCT-AATAT
** *
25942568 CAGAGAGCACAAATGTGCT-A-AT
1 CAGAGAGCACTGACGTGCTAATAT
*
25942590 CAGAGAGCACTGACGTACTAATATT
1 CAGAGAGCACTGACGTGCTAATA-T
*
25942615 CAGAGAGCACTGGCGTGCTAATAAT
1 CAGAGAGCACTGACGTGCTAAT-AT
*
25942640 CAGAGAGCACTGACGTACTAATATT
1 CAGAGAGCACTGACGTGCTAATA-T
*
25942665 CAGAGAGCACTGGCGTGCTAATAAT
1 CAGAGAGCACTGACGTGCTAAT-AT
25942690 CAGAGAGCA
1 CAGAGAGCA
25942699 TGCTGAATTC
Statistics
Matches: 215, Mismatches: 40, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
22 79 0.37
23 9 0.04
24 5 0.02
25 120 0.56
26 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (24 bp):
CAGAGAGCACTGACGTGCTAATAT
Found at i:25943566 original size:25 final size:24
Alignment explanation
Indices: 25943532--25943706 Score: 164
Period size: 25 Copynumber: 7.4 Consensus size: 24
25943522 GACTTCAGCA
*
25943532 TGCTCTCTGATTATTAGCACGCCAG
1 TGCTCTCTGA-TATTAGCACGTCAG
*
25943557 TGCTCTCTGAATATTAGCACGCCAG
1 TGCTCTCTG-ATATTAGCACGTCAG
25943582 TGCTCTCTGATATTTAGCACGTCAG
1 TGCTCTCTGATA-TTAGCACGTCAG
* **
25943607 TGCTCTCT-A-ATTAGCACATTTG
1 TGCTCTCTGATATTAGCACGTCAG
*
25943629 TGCTCTCTGATATTTAGCATGTCAG
1 TGCTCTCTGATA-TTAGCACGTCAG
* **
25943654 TGCTCTCTG--ATTAGCACATTTG
1 TGCTCTCTGATATTAGCACGTCAG
* * *
25943676 TGCTCTCTG-TA-TAACACTTCAA
1 TGCTCTCTGATATTAGCACGTCAG
25943698 TGCTCTCTG
1 TGCTCTCTG
25943707 TTCATTAGTG
Statistics
Matches: 127, Mismatches: 17, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
22 49 0.39
23 4 0.03
24 5 0.04
25 68 0.54
26 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (24 bp):
TGCTCTCTGATATTAGCACGTCAG
Found at i:25943638 original size:47 final size:47
Alignment explanation
Indices: 25943532--25943684 Score: 200
Period size: 47 Copynumber: 3.2 Consensus size: 47
25943522 GACTTCAGCA
* ****
25943532 TGCTCTCTGAT-TATTAGCACGCCAGTGCTCTCTGAATATTAGCACGCCAG
1 TGCTCTCTGATAT-TTAGCACGTCAGTGCTCTCT--A-ATTAGCACATTTG
25943582 TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTAATTAGCACATTTG
1 TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTAATTAGCACATTTG
* *
25943629 TGCTCTCTGATATTTAGCATGTCAGTGCTCTCTGATTAGCACATTTG
1 TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTAATTAGCACATTTG
25943676 TGCTCTCTG
1 TGCTCTCTG
25943685 TATAACACTT
Statistics
Matches: 95, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
47 63 0.66
48 1 0.01
50 30 0.32
51 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.37
Consensus pattern (47 bp):
TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTAATTAGCACATTTG
Found at i:25943678 original size:22 final size:22
Alignment explanation
Indices: 25943606--25943684 Score: 86
Period size: 22 Copynumber: 3.5 Consensus size: 22
25943596 TAGCACGTCA
*
25943606 GTGCTCTCTAATTAGCACATTT
1 GTGCTCTCTGATTAGCACATTT
** **
25943628 GTGCTCTCTGATATTTAGCATGTCA
1 GTGCTCTCTG--A-TTAGCACATTT
25943653 GTGCTCTCTGATTAGCACATTT
1 GTGCTCTCTGATTAGCACATTT
25943675 GTGCTCTCTG
1 GTGCTCTCTG
25943685 TATAACACTT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
22 26 0.58
23 1 0.02
24 1 0.02
25 17 0.38
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.41
Consensus pattern (22 bp):
GTGCTCTCTGATTAGCACATTT
Found at i:25943714 original size:47 final size:46
Alignment explanation
Indices: 25943581--25943706 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 46
25943571 TAGCACGCCA
* * * *
25943581 GTGCTCTCTGATATTTAGCACGTCAGTGCTCTCTAATTAGCACATTT
1 GTGCTCTCTGATA-TTAACATGTCAATGCTCTCTGATTAGCACATTT
* *
25943628 GTGCTCTCTGATATTTAGCATGTCAGTGCTCTCTGATTAGCACATTT
1 GTGCTCTCTGATA-TTAACATGTCAATGCTCTCTGATTAGCACATTT
25943675 GTGCTCTCTG-TA-TAACACT-TCAATGCTCTCTG
1 GTGCTCTCTGATATTAACA-TGTCAATGCTCTCTG
25943707 TTCATTAGTG
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
44 16 0.22
45 1 0.01
46 2 0.03
47 55 0.74
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (46 bp):
GTGCTCTCTGATATTAACATGTCAATGCTCTCTGATTAGCACATTT
Found at i:25945793 original size:13 final size:14
Alignment explanation
Indices: 25945766--25945795 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
25945756 TATTATTGTT
*
25945766 AAAAGTAAATAAAA
1 AAAAGGAAATAAAA
25945780 AAAAGGAAATAAAA
1 AAAAGGAAATAAAA
25945794 AA
1 AA
25945796 GAAAGAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (14 bp):
AAAAGGAAATAAAA
Found at i:25945866 original size:17 final size:19
Alignment explanation
Indices: 25945846--25945887 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
25945836 CAGGGGACGG
25945846 AAGAAAGAA-A-AAGAGAA
1 AAGAAAGAAGAGAAGAGAA
25945863 AAGAAAGAAGAGAAGAGAA
1 AAGAAAGAAGAGAAGAGAA
*
25945882 GAGAAA
1 AAGAAA
25945888 ATTAAAGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.41
18 1 0.05
19 12 0.55
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAGAAGAGAA
Found at i:25945875 original size:14 final size:14
Alignment explanation
Indices: 25945849--25945886 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
25945839 GGGACGGAAG
25945849 AAAGAAA-AAGAGA
1 AAAGAAAGAAGAGA
25945862 AAAGAAAGAAGAGA
1 AAAGAAAGAAGAGA
*
25945876 AGAGAAGAGAA
1 AAAGAA-AGAA
25945887 AATTAAAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 7 0.32
14 11 0.50
15 4 0.18
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (14 bp):
AAAGAAAGAAGAGA
Found at i:25950473 original size:29 final size:29
Alignment explanation
Indices: 25950434--25950513 Score: 117
Period size: 28 Copynumber: 2.8 Consensus size: 29
25950424 CACTTTGTGC
25950434 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGATGGATTATAT
*
25950463 TATTCTGGTGTGTTTGGGA-GGATTATAT
1 TATTCTGGTGTGTTTTGGATGGATTATAT
* * *
25950491 GATACTGGTGTGTTTTGGTTGGA
1 TATTCTGGTGTGTTTTGGATGGA
25950514 CATTTTGGTG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
28 24 0.53
29 21 0.47
ACGTcount: A:0.16, C:0.04, G:0.33, T:0.47
Consensus pattern (29 bp):
TATTCTGGTGTGTTTTGGATGGATTATAT
Found at i:25950736 original size:22 final size:23
Alignment explanation
Indices: 25950699--25950742 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
25950689 GCTTTATTGA
25950699 TCAGGCACTTTATGTGTCGTATG
1 TCAGGCACTTTATGTGTCGTATG
25950722 TCAGGCAC-TTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
25950743 TCTGATCAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATG
Found at i:25965186 original size:13 final size:14
Alignment explanation
Indices: 25965168--25965196 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
25965158 AAAATATACA
25965168 AAAATT-AAATAGT
1 AAAATTGAAATAGT
25965181 AAAATTGAAATAGT
1 AAAATTGAAATAGT
25965195 AA
1 AA
25965197 TAGATGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (14 bp):
AAAATTGAAATAGT
Found at i:25965581 original size:21 final size:20
Alignment explanation
Indices: 25965542--25965581 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
25965532 ATAATAATAG
*
25965542 TATTTTAAATTTAAGATATT
1 TATTTTAAATTTAAAATATT
*
25965562 TATTTTATATTTTAAAATAT
1 TATTTTA-AATTTAAAATAT
25965582 ATTGTTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
TATTTTAAATTTAAAATATT
Found at i:25973275 original size:46 final size:46
Alignment explanation
Indices: 25973223--25973344 Score: 226
Period size: 46 Copynumber: 2.7 Consensus size: 46
25973213 GCTTTCTGAA
25973223 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
25973269 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
25973315 ATAAAATGTGTAAGACCATGGTGGAAAGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGAT
25973345 TGTAACGCCC
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.40, C:0.11, G:0.25, T:0.24
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:25977739 original size:26 final size:26
Alignment explanation
Indices: 25977710--25977869 Score: 266
Period size: 26 Copynumber: 6.2 Consensus size: 26
25977700 TGGTACAAAT
*
25977710 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
25977736 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
25977762 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
25977788 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
25977814 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
25977840 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
25977866 TGAT
1 TGAT
25977870 GGACATTTCA
Statistics
Matches: 127, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 127 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:25977772 original size:52 final size:52
Alignment explanation
Indices: 25977710--25977869 Score: 293
Period size: 52 Copynumber: 3.1 Consensus size: 52
25977700 TGGTACAAAT
25977710 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
25977762 TGATAATGGGTTAGGTAAATATTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
25977814 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
25977866 TGAT
1 TGAT
25977870 GGACATTTCA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 104 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:25979463 original size:27 final size:27
Alignment explanation
Indices: 25979423--25979563 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
25979413 AGGAAGCGTC
*
25979423 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
25979450 TTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
25979476 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
25979504 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
25979531 CTGGTGGCTCTACCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
25979558 CTGGTG
1 CTGGTG
25979564 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 84 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:25979502 original size:54 final size:54
Alignment explanation
Indices: 25979420--25979563 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
25979410 TGGAGGAAGC
*
25979420 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
25979474 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
25979528 GTTCTGGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
25979564 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 79 0.93
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:25979574 original size:27 final size:26
Alignment explanation
Indices: 25979436--25979581 Score: 104
Period size: 27 Copynumber: 5.4 Consensus size: 26
25979426 GTGGCTATGC
* *
25979436 CACAATTATCTG-ATTTGGTGGCTCTGC
1 CACAA-TATCTGTATCTGGTGGCTC-GT
* * *
25979463 CACATATATCTGT-CCTGGTGGCTATGC
1 CACA-ATATCTGTATCTGGTGGCT-CGT
*
25979490 CACAATTATCTG-ATCTGGTGGCTCTGC
1 CACAA-TATCTGTATCTGGTGGCTC-GT
25979517 CACATATATCTGT-TCTGGTGGCTC-T
1 CACA-ATATCTGTATCTGGTGGCTCGT
*
25979542 ACCACAATATCTGTATCTGGTGACTTCGT
1 --CACAATATCTGTATCTGGTGGC-TCGT
25979571 CACAATATCTG
1 CACAATATCTG
25979582 GCAGCCTCGC
Statistics
Matches: 99, Mismatches: 7, Indels: 26
0.75 0.05 0.20
Matches are distributed among these distances:
26 9 0.09
27 85 0.86
28 4 0.04
29 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (26 bp):
CACAATATCTGTATCTGGTGGCTCGT
Found at i:25979575 original size:81 final size:80
Alignment explanation
Indices: 25979423--25979581 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 80
25979413 AGGAAGCGTC
* *
25979423 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTACCACATATATCTGTCCTGGTGACTAT
25979488 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* *
25979504 CTGGTGGCTCTGCCAC-ATATATCTG-TTCTGGTGGCTCTACCACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGATT-TGGTGGCTCTACCACATATATCTGT-CCTGGTGAC
*
25979566 T-TCGTCACAATATCTG
63 TAT-GCCACAATATCTG
25979582 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
80 19 0.28
81 50 0.72
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTACCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:25981219 original size:23 final size:24
Alignment explanation
Indices: 25981193--25981287 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 24
25981183 AAATGTCCAA
25981193 CCAAAACACACCAG-TATAATCCT
1 CCAAAACACACCAGATATAATCCT
25981216 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG----ATATAATCCT
*
25981244 CCCAAACACACCTGAATGATATAATCCAT
1 CCAAAACACACC---A-GATATAATCC-T
25981273 CCAAAACACACCAGA
1 CCAAAACACACCAGA
25981288 ATTCGGATAA
Statistics
Matches: 60, Mismatches: 2, Indels: 18
0.75 0.03 0.22
Matches are distributed among these distances:
23 14 0.23
25 2 0.03
26 1 0.02
28 29 0.48
29 12 0.20
31 1 0.02
32 1 0.02
ACGTcount: A:0.44, C:0.34, G:0.05, T:0.17
Consensus pattern (24 bp):
CCAAAACACACCAGATATAATCCT
Found at i:25981289 original size:29 final size:28
Alignment explanation
Indices: 25981207--25981289 Score: 121
Period size: 28 Copynumber: 2.9 Consensus size: 28
25981197 AACACACCAG
*
25981207 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATCA
* * *
25981235 TATAATCCTCCCAAACACACCTGAATGA
1 TATAATCCTCCAAAACACACCAGAATCA
25981263 TATAATCCATCCAAAACACACCAGAAT
1 TATAATCC-TCCAAAACACACCAGAAT
25981290 TCGGATAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 32 0.67
29 16 0.33
ACGTcount: A:0.43, C:0.31, G:0.05, T:0.20
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATCA
Found at i:25984256 original size:46 final size:45
Alignment explanation
Indices: 25984136--25984277 Score: 167
Period size: 46 Copynumber: 3.1 Consensus size: 45
25984126 AGGCTGTTAC
* * *
25984136 AAAGATACCATGGCAACATGACGGGAATGAATAAGACCATTGTTG
1 AAAGATACCATGGCAACATGACAGAAATGAATAAGACCATAGTTG
* ** * * *
25984181 AAAGATACCATGGGAATGTAACATGAAATGAACAAGACCATGGTTG
1 AAAGATACCATGGCAACATGACA-GAAATGAATAAGACCATAGTTG
* *
25984227 AAAGATACCATGGCAACCTGACAGAAAATGAGTAAGACCATAGTTG
1 AAAGATACCATGGCAACATGACAG-AAATGAATAAGACCATAGTTG
25984273 AAAGA
1 AAAGA
25984278 CATTATGGCA
Statistics
Matches: 80, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
45 19 0.24
46 61 0.76
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (45 bp):
AAAGATACCATGGCAACATGACAGAAATGAATAAGACCATAGTTG
Found at i:25984594 original size:16 final size:17
Alignment explanation
Indices: 25984573--25984605 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25984563 ATGATGGAGC
25984573 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
25984589 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
25984606 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:25988535 original size:37 final size:37
Alignment explanation
Indices: 25988478--25988551 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
25988468 TTGGTAGAGG
*
25988478 TTGTAACAAGCCAGCGTATGTTAAATTGTCCCCCTTA
1 TTGTAACAAGCCAACGTATGTTAAATTGTCCCCCTTA
*
25988515 TTGTAACAAGCCAACTTATGTTAAATTGTCCCCCTTA
1 TTGTAACAAGCCAACGTATGTTAAATTGTCCCCCTTA
25988552 CATGTTTGAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (37 bp):
TTGTAACAAGCCAACGTATGTTAAATTGTCCCCCTTA
Found at i:25991735 original size:3 final size:3
Alignment explanation
Indices: 25991729--25991766 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
25991719 TATTATACTA
25991729 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
25991767 ATAATACATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:25993151 original size:25 final size:25
Alignment explanation
Indices: 25993122--25993173 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
25993112 TTTGGCTTGA
**
25993122 CATTTACTAAGCAATATTGAATATT
1 CATTTACTAAGCAATATCAAATATT
* *
25993147 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
25993172 CA
1 CA
25993174 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.38
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:25996569 original size:44 final size:44
Alignment explanation
Indices: 25996519--25996604 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
25996509 TAACAGTAGC
*
25996519 AGTACGACACACATGGTGCCTCATCGACTCGAA-GTCGAAGTAAT
1 AGTACGACACACATAGTGCCTCATCGACTC-AAGGTCGAAGTAAT
**
25996563 AGTACGACACTTATAGTGCCTCATCGACTCAAGGTCGAAGTA
1 AGTACGACACACATAGTGCCTCATCGACTCAAGGTCGAAGTA
25996605 TCCCTGAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 2 0.05
44 36 0.95
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (44 bp):
AGTACGACACACATAGTGCCTCATCGACTCAAGGTCGAAGTAAT
Found at i:25997398 original size:16 final size:17
Alignment explanation
Indices: 25997367--25997399 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
25997357 AATTTCTATC
25997367 CAATTTATACCCTAATT
1 CAATTTATACCCTAATT
*
25997384 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
25997400 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (17 bp):
CAATTTATACCCTAATT
Found at i:25998198 original size:20 final size:18
Alignment explanation
Indices: 25998173--25998209 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
25998163 ACCATTTGAT
25998173 TTATTTCATAATATAATATC
1 TTATTT-ATAAT-TAATATC
25998193 TTATTTATAATTAATAT
1 TTATTTATAATTAATAT
25998210 AAATTACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATTTATAATTAATATC
Found at i:26001408 original size:39 final size:40
Alignment explanation
Indices: 26001204--26001426 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
26001194 TTGAATGCTG
* * * * * *
26001204 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
26001244 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
26001284 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
26001324 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
26001364 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
26001403 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26001427 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:26001446 original size:79 final size:80
Alignment explanation
Indices: 26001279--26001461 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
26001269 GTGCGAGATA
* * *
26001279 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
26001344 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
26001359 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
26001423 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
26001438 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
26001462 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:26003411 original size:16 final size:16
Alignment explanation
Indices: 26003390--26003463 Score: 71
Period size: 16 Copynumber: 4.7 Consensus size: 16
26003380 TCTTTATTTC
26003390 ATTTATTTTATTTGTT
1 ATTTATTTTATTTGTT
*
26003406 ATTTATTTTATGT-TT
1 ATTTATTTTATTTGTT
* * * **
26003421 ATTT-TAATAATATAAT
1 ATTTAT-TTTATTTGTT
26003437 ATTTATTTTATTTGTT
1 ATTTATTTTATTTGTT
26003453 ATTTATTTTAT
1 ATTTATTTTAT
26003464 GTTTATTTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
14 1 0.02
15 10 0.22
16 33 0.73
17 1 0.02
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (16 bp):
ATTTATTTTATTTGTT
Found at i:26003421 original size:11 final size:11
Alignment explanation
Indices: 26003391--26003473 Score: 57
Period size: 11 Copynumber: 7.4 Consensus size: 11
26003381 CTTTATTTCA
26003391 TTTAT-TTTAT
1 TTTATATTTAT
26003401 TTGT-TATTTAT
1 TT-TATATTTAT
*
26003412 TTTATGTTTAT
1 TTTATATTTAT
*
26003423 TTTAATAATATAAT
1 TTT-AT-AT-TTAT
26003437 ATTTAT-TTTAT
1 -TTTATATTTAT
26003448 TTGT-TATTTAT
1 TT-TATATTTAT
*
26003459 TTTATGTTTAT
1 TTTATATTTAT
26003470 TTTA
1 TTTA
26003474 ATAATAATAA
Statistics
Matches: 58, Mismatches: 5, Indels: 19
0.71 0.06 0.23
Matches are distributed among these distances:
10 8 0.14
11 38 0.66
12 3 0.05
13 1 0.02
14 5 0.09
15 3 0.05
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (11 bp):
TTTATATTTAT
Found at i:26003442 original size:47 final size:48
Alignment explanation
Indices: 26003390--26003486 Score: 187
Period size: 47 Copynumber: 2.0 Consensus size: 48
26003380 TCTTTATTTC
26003390 ATTTATTTTATTTGTTATTTATTTTATGTTTATTTTAATAAT-ATAAT
1 ATTTATTTTATTTGTTATTTATTTTATGTTTATTTTAATAATAATAAT
26003437 ATTTATTTTATTTGTTATTTATTTTATGTTTATTTTAATAATAATAAT
1 ATTTATTTTATTTGTTATTTATTTTATGTTTATTTTAATAATAATAAT
26003485 AT
1 AT
26003487 AATTATTATT
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 42 0.86
48 7 0.14
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (48 bp):
ATTTATTTTATTTGTTATTTATTTTATGTTTATTTTAATAATAATAAT
Found at i:26004982 original size:33 final size:33
Alignment explanation
Indices: 26004943--26005051 Score: 132
Period size: 33 Copynumber: 3.3 Consensus size: 33
26004933 GGTGTACATT
**
26004943 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTATACACAAAGTATACCTAA
*
26004976 CTTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTTCA-AGTGGTATACACAAAGTATACCTAA
* * * *
26005009 CCTTTCCAAGT-GTACACACAAAGTGTACATAA
1 CCTTTTCAAGTGGTATACACAAAGTATACCTAA
26005041 CCTTTTCAAGT
1 CCTTTTCAAGT
26005052 TGTAGCACTT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
32 29 0.45
33 35 0.54
34 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.34
Consensus pattern (33 bp):
CCTTTTCAAGTGGTATACACAAAGTATACCTAA
Found at i:26012050 original size:33 final size:33
Alignment explanation
Indices: 26012012--26012125 Score: 142
Period size: 33 Copynumber: 3.5 Consensus size: 33
26012002 GGTGTACATT
**
26012012 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACCTAA
*
26012045 CCTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTTCA-AGTGGTACACACAAAGTATACCTAA
* * *
26012078 CCTTTCCAAGT-GTACACACAAAGTGTACATAA
1 CCTTTTCAAGTGGTACACACAAAGTATACCTAA
*
26012110 CCTTTTCAAGTTGTAC
1 CCTTTTCAAGTGGTAC
26012126 CACTTGGGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
32 29 0.41
33 40 0.57
34 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.32
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACAAAGTATACCTAA
Found at i:26013430 original size:23 final size:21
Alignment explanation
Indices: 26013361--26013435 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
26013351 CCTGATCAGT
** *
26013361 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTA
* *
26013382 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTA
26013403 ATACGACACACGAGGTGCCTCA
1 ATACGACACACGAGGTGCCT-A
26013425 AGTACGACACA
1 A-TACGACACA
26013436 TAAAGTGCCT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 35 0.78
22 1 0.02
23 9 0.20
ACGTcount: A:0.37, C:0.28, G:0.21, T:0.13
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTA
Found at i:26013443 original size:23 final size:21
Alignment explanation
Indices: 26013361--26013448 Score: 86
Period size: 21 Copynumber: 4.1 Consensus size: 21
26013351 CCTGATCAGT
*
26013361 ATACGACACATAAAGTGCCTA
1 ATACGACACACAAAGTGCCTA
* * * *
26013382 AAACGACACACGAGGTGCCTG
1 ATACGACACACAAAGTGCCTA
* *
26013403 ATACGACACACGAGGTGCCTCA
1 ATACGACACACAAAGTGCCT-A
*
26013425 AGTACGACACATAAAGTGCCTA
1 A-TACGACACACAAAGTGCCTA
26013447 AT
1 AT
26013449 CGGTAAAGCC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
21 36 0.65
22 3 0.05
23 16 0.29
ACGTcount: A:0.38, C:0.26, G:0.20, T:0.16
Consensus pattern (21 bp):
ATACGACACACAAAGTGCCTA
Found at i:26013850 original size:15 final size:14
Alignment explanation
Indices: 26013826--26013865 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
26013816 TATATATTAT
26013826 ATAATTCAATCAAA
1 ATAATTCAATCAAA
*
26013840 ATAATTTCAATCAAT
1 ATAA-TTCAATCAAA
26013855 ATAAATTCAAT
1 AT-AATTCAAT
26013866 AAATTCATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 17 0.74
16 2 0.09
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATTCAATCAAA
Found at i:26014231 original size:51 final size:51
Alignment explanation
Indices: 26014175--26014292 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 51
26014165 CCAAAATTTT
* * * *
26014175 CTTCATACTTCATCCGGA-ATTATTACTTTGTTGTTCTGGCTTCAACAAGAA
1 CTTCATATTTCATCCGGATA-TATTACTTTATTGCTCTAGCTTCAACAAGAA
* *
26014226 CTTCATATTTCATCCGGATATATTACTTTATTGCTCTAGTTTCAACAAGAG
1 CTTCATATTTCATCCGGATATATTACTTTATTGCTCTAGCTTCAACAAGAA
26014277 CTTCATATTTCATCCG
1 CTTCATATTTCATCCG
26014293 AATAACTTAG
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
51 59 0.98
52 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.41
Consensus pattern (51 bp):
CTTCATATTTCATCCGGATATATTACTTTATTGCTCTAGCTTCAACAAGAA
Found at i:26014737 original size:2 final size:2
Alignment explanation
Indices: 26014730--26014761 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
26014720 TTACTTGTTT
*
26014730 TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26014762 ATAACATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:26016725 original size:27 final size:27
Alignment explanation
Indices: 26016622--26016724 Score: 152
Period size: 27 Copynumber: 3.8 Consensus size: 27
26016612 ATTACCAAAG
*
26016622 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
26016649 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
26016676 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
26016703 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTACAGAATTAC
26016725 TAAAATGCCC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:26016736 original size:54 final size:54
Alignment explanation
Indices: 26016608--26016743 Score: 164
Period size: 54 Copynumber: 2.5 Consensus size: 54
26016598 CCTCAAATTG
* * *
26016608 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTA
* * *** *
26016662 CAGAATTACCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTA
* * *
26016716 TAAAATTACTAAAATGCCCTTGGTTTAC
1 TAAAATTACCAAAATACCCTTGATTTAC
26016744 CAAAATACCC
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.38
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTA
Found at i:26016771 original size:27 final size:27
Alignment explanation
Indices: 26016740--26017052 Score: 215
Period size: 27 Copynumber: 11.6 Consensus size: 27
26016730 TGCCCTTGGT
**
26016740 TTACCAAAATACCCTCGATCAGTAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
* *
26016767 TTACCAAAATACCCTAG-TCTGTAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
* * *
26016793 TTACTAAAATACCC-CTGGTTTATAAAA
1 TTACCAAAATACCCTC-GATTTGTAAAA
* *
26016820 TTACCGAAATACCCTCAATTTGTAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
*
26016847 TTACCAAAATACCC-CTAGTTTGTAAAA
1 TTACCAAAATACCCTCGA-TTTGTAAAA
* *
26016874 TTACCAAAATACCACT-GGTTTGTGAAA
1 TTACCAAAATACC-CTCGATTTGTAAAA
* * *
26016901 TTATCGAAATACCCTCAATTTGTAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
** *
26016928 TTACCAAAATACCC-CTGATTTACAAAG
1 TTACCAAAATACCCTC-GATTTGTAAAA
* *
26016955 TTA-CAGAAATACCCTTGACTTTCTAAAAA
1 TTACCA-AAATACCCTCGA-TTTGT-AAAA
*** * * * **
26016984 TTATGGAAATACCATTGGTTTACAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
* * * * *
26017011 TTACTAAAATACCCTTGGTTTGTAGAT
1 TTACCAAAATACCCTCGATTTGTAAAA
*
26017038 TTACCAAAACACCCT
1 TTACCAAAATACCCT
26017053 TGTAGGATGA
Statistics
Matches: 226, Mismatches: 47, Indels: 26
0.76 0.16 0.09
Matches are distributed among these distances:
26 29 0.13
27 173 0.77
28 8 0.04
29 16 0.07
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TTACCAAAATACCCTCGATTTGTAAAA
Found at i:26016902 original size:81 final size:81
Alignment explanation
Indices: 26016740--26016943 Score: 311
Period size: 81 Copynumber: 2.5 Consensus size: 81
26016730 TGCCCTTGGT
* * ** *
26016740 TTACCAAAATACCCTCGATCAGTAAAATTACCAAAATA-CCCTAGTCTGTAAAATTACTAAAATA
1 TTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATA
*
26016804 CCCCTGGTTTATAAAA
66 CCACTGGTTTATAAAA
*
26016820 TTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATA
1 TTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATA
* *
26016885 CCACTGGTTTGTGAAA
66 CCACTGGTTTATAAAA
*
26016901 TTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
1 TTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
26016944 GATTTACAAA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 34 0.30
81 79 0.70
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (81 bp):
TTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATA
CCACTGGTTTATAAAA
Found at i:26016965 original size:81 final size:79
Alignment explanation
Indices: 26016740--26016967 Score: 282
Period size: 81 Copynumber: 2.8 Consensus size: 79
26016730 TGCCCTTGGT
* * **
26016740 TTACCAAAATACCCTCGATCAGTAAAATTACCAAAATA-CCCT-AGTCTGTAAAATTACTAAAAT
1 TTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA-T-TGTAAAATTAC-AAAAT
*
26016803 ACCCCTGGTTTATAAAA
63 ACCACTGGTTTATAAAA
*
26016820 TTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATA
1 TTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTGTAAAATTA-CAAAATA
* *
26016885 CCACTGGTTTGTGAAA
64 CCACTGGTTTATAAAA
*
26016901 TTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATT-TACAAAGTTACAGAAAT
1 TTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTGTA-AAA-TTACA-AAAT
26016965 ACC
63 ACC
26016968 CTTGACTTTC
Statistics
Matches: 131, Mismatches: 10, Indels: 13
0.85 0.06 0.08
Matches are distributed among these distances:
79 2 0.02
80 42 0.32
81 85 0.65
82 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (79 bp):
TTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTGTAAAATTACAAAATACC
ACTGGTTTATAAAA
Found at i:26017115 original size:27 final size:27
Alignment explanation
Indices: 26017085--26017172 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
26017075 ACCCCTATTA
26017085 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
* *
26017112 GGTAAAGAGACCGTACAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
** *
26017139 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAAAGACCGTAA-AGCCCCTGTAG
26017166 GGTAAAA
1 GGTAAAA
26017173 TGACGAATAT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAGCCCCTGTAG
Found at i:26018076 original size:25 final size:26
Alignment explanation
Indices: 26017979--26018076 Score: 171
Period size: 26 Copynumber: 3.8 Consensus size: 26
26017969 GAGGAAGTGC
*
26017979 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
26018005 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
26018031 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
26018057 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
26018077 ATTAAAGAGG
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 10 0.14
26 59 0.86
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:26018280 original size:42 final size:42
Alignment explanation
Indices: 26018221--26018312 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
26018211 TAGTCTCCCC
* ** *
26018221 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
26018263 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
26018305 AAATGGGC
1 AAATGGGC
26018313 CTATAGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:26018374 original size:31 final size:31
Alignment explanation
Indices: 26018336--26018414 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
26018326 CGTTTACAGT
*
26018336 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
26018367 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
26018398 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
26018415 ATATGTCAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:26021799 original size:7 final size:7
Alignment explanation
Indices: 26021787--26021811 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26021777 TGATGTGTGT
26021787 AATTGAA
1 AATTGAA
26021794 AATTGAA
1 AATTGAA
26021801 AATTGAA
1 AATTGAA
26021808 AATT
1 AATT
26021812 ATGAATTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (7 bp):
AATTGAA
Found at i:26022212 original size:37 final size:37
Alignment explanation
Indices: 26022149--26022253 Score: 133
Period size: 37 Copynumber: 2.8 Consensus size: 37
26022139 TACTTCATGT
*
26022149 TTTGGCGTGTTATCGAGTGAATTAGCTCTTAT-GAGCA
1 TTTGGCGTGTTATCG-GTGGATTAGCTCTTATGGAGCA
* *
26022186 TTTGGCGTGTTTTCGGTTGGACTAGCTCTT-TGGAGCA
1 TTTGGCGTGTTATCGG-TGGATTAGCTCTTATGGAGCA
*
26022223 ATTGGCGTGTTATCGGGTGGATTAGCTCTTA
1 TTTGGCGTGTTATC-GGTGGATTAGCTCTTA
26022254 CAAACGATTG
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
36 2 0.03
37 54 0.93
38 2 0.03
ACGTcount: A:0.16, C:0.14, G:0.30, T:0.39
Consensus pattern (37 bp):
TTTGGCGTGTTATCGGTGGATTAGCTCTTATGGAGCA
Found at i:26022270 original size:37 final size:37
Alignment explanation
Indices: 26022229--26022318 Score: 110
Period size: 37 Copynumber: 2.5 Consensus size: 37
26022219 AGCAATTGGC
*
26022229 GTGTTATCGGGTGGATTAGCTCTTACAAACGATTGAT
1 GTGTTATCAGGTGGATTAGCTCTTACAAACGATTGAT
* * * **
26022266 GTGTTATCAGGTGGTTTAGCTCTTATAAGCGATTGGC
1 GTGTTATCAGGTGGATTAGCTCTTACAAACGATTGAT
*
26022303 GTGTT-TCAGTTGGATT
1 GTGTTATCAGGTGGATT
26022319 GTTTGTGTAC
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
36 9 0.20
37 36 0.80
ACGTcount: A:0.20, C:0.12, G:0.29, T:0.39
Consensus pattern (37 bp):
GTGTTATCAGGTGGATTAGCTCTTACAAACGATTGAT
Found at i:26026151 original size:23 final size:23
Alignment explanation
Indices: 26026114--26026173 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
26026104 AATCACCTTG
* *
26026114 TAAAACAAAATGGCTCGTTTCTTA
1 TAAAA-AAAAAGGCTAGTTTCTTA
26026138 TAAAAAAAAAGGCTAGTTTCTTA
1 TAAAAAAAAAGGCTAGTTTCTTA
26026161 TAAAAAAAAAGGC
1 TAAAAAAAAAGGC
26026174 GTGAAATCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
23 29 0.85
24 5 0.15
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27
Consensus pattern (23 bp):
TAAAAAAAAAGGCTAGTTTCTTA
Found at i:26029996 original size:25 final size:25
Alignment explanation
Indices: 26029968--26030024 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
26029958 TGCTCTCACG
*
26029968 AGCTGTGAATCAGGAAGCTTATATA
1 AGCTGTGAATCAGGAAGCTTATACA
*** *
26029993 AGCTACAAATCAGGAAGCTTATACG
1 AGCTGTGAATCAGGAAGCTTATACA
26030018 AGCTGTG
1 AGCTGTG
26030025 GTGTGTCCGC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.25
Consensus pattern (25 bp):
AGCTGTGAATCAGGAAGCTTATACA
Found at i:26031525 original size:24 final size:24
Alignment explanation
Indices: 26031498--26031552 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
26031488 TTAGAGTTTG
*
26031498 ATTGAAATAAATAAACAGAGTTCA
1 ATTGAAACAAATAAACAGAGTTCA
* *
26031522 ATTGAAACAAATAAATAGAGTTTA
1 ATTGAAACAAATAAACAGAGTTCA
26031546 ATTGAAA
1 ATTGAAA
26031553 GATTATTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.27
Consensus pattern (24 bp):
ATTGAAACAAATAAACAGAGTTCA
Found at i:26056855 original size:15 final size:17
Alignment explanation
Indices: 26056830--26056865 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
26056820 ATAAAAATAT
26056830 AATATAATATT-AAAAA
1 AATATAATATTCAAAAA
26056846 AATA-AATATTCAAAAA
1 AATATAATATTCAAAAA
26056862 AATA
1 AATA
26056866 CATAATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (17 bp):
AATATAATATTCAAAAA
Found at i:26060143 original size:17 final size:17
Alignment explanation
Indices: 26060109--26060141 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26060099 AAAAAAATTA
*
26060109 AATATGTATAATTATTT
1 AATATGTATAAATATTT
26060126 AATATG-ATAAATATTT
1 AATATGTATAAATATTT
26060142 TATTGATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
AATATGTATAAATATTT
Found at i:26063904 original size:31 final size:29
Alignment explanation
Indices: 26063869--26063935 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 29
26063859 ATTAATAATG
*
26063869 TAAAATTATACTTTAACCTTCTTTAAAA-TTA
1 TAAAATT-TAATTTAA-C-TCTTTAAAAGTTA
*
26063900 TAAAAATTTAATTTAACTGTTTAAAAGTTA
1 T-AAAATTTAATTTAACTCTTTAAAAGTTA
26063930 TAAAAT
1 TAAAAT
26063936 ATAAACTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
29 13 0.41
30 5 0.16
31 8 0.25
32 6 0.19
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.43
Consensus pattern (29 bp):
TAAAATTTAATTTAACTCTTTAAAAGTTA
Found at i:26064860 original size:14 final size:14
Alignment explanation
Indices: 26064841--26064869 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26064831 TTTTCCTTTC
26064841 CTTACATATGATTA
1 CTTACATATGATTA
26064855 CTTACATATGATTA
1 CTTACATATGATTA
26064869 C
1 C
26064870 ATAAGATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.41
Consensus pattern (14 bp):
CTTACATATGATTA
Found at i:26064960 original size:7 final size:7
Alignment explanation
Indices: 26064948--26064975 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
26064938 CACTAGTAGT
26064948 AATAATA
1 AATAATA
26064955 AATAATA
1 AATAATA
26064962 AATAATA
1 AATAATA
26064969 AATAATA
1 AATAATA
26064976 TTAACTAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AATAATA
Found at i:26064960 original size:23 final size:23
Alignment explanation
Indices: 26064909--26064952 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
26064899 ATTGTTTTCC
*
26064909 TATT-ATCACTAGTTTAATAAAA
1 TATTAATCACTAGTGTAATAAAA
26064931 TATTAATCACTAGTAGTAATAA
1 TATTAATCACTAGT-GTAATAA
26064953 TAAATAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 9 0.47
24 6 0.32
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (23 bp):
TATTAATCACTAGTGTAATAAAA
Found at i:26082128 original size:18 final size:19
Alignment explanation
Indices: 26082107--26082142 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26082097 TGATATATGT
26082107 ATAAAT-TTAAAAATATAG
1 ATAAATATTAAAAATATAG
*
26082125 ATAAATATTAAAATTATA
1 ATAAATATTAAAAATATA
26082143 CATGAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (19 bp):
ATAAATATTAAAAATATAG
Found at i:26082154 original size:19 final size:19
Alignment explanation
Indices: 26082107--26082154 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
26082097 TGATATATGT
*
26082107 ATAAA-TTTAAAAATATAG
1 ATAAATTTTAAAAATATAC
* *
26082125 ATAAATATTAAAATTATAC
1 ATAAATTTTAAAAATATAC
*
26082144 ATGAATTTTAA
1 ATAAATTTTAA
26082155 TTCAATATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (19 bp):
ATAAATTTTAAAAATATAC
Found at i:26083130 original size:31 final size:31
Alignment explanation
Indices: 26083095--26083155 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
26083085 AAATAAGTAT
* * *
26083095 TAAATTATTTAAATTTTTTTGTTTAAGTCAA
1 TAAATTATTCAAAATTTTTTATTTAAGTCAA
26083126 TAAATTATTCAAAATTTTTTATTTAAGTCA
1 TAAATTATTCAAAATTTTTTATTTAAGTCA
26083156 TTAGATTCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (31 bp):
TAAATTATTCAAAATTTTTTATTTAAGTCAA
Found at i:26087430 original size:4 final size:4
Alignment explanation
Indices: 26087421--26087452 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
26087411 CCAAGCAACA
26087421 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
26087453 CCATGCATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:26090172 original size:21 final size:21
Alignment explanation
Indices: 26090146--26090188 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26090136 GATAAAATTA
* **
26090146 TTGGAAGTGGAATTTTAACCT
1 TTGGAAGGGGAACATTAACCT
26090167 TTGGAAGGGGAACATTAACCT
1 TTGGAAGGGGAACATTAACCT
26090188 T
1 T
26090189 CAGAAGAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.33
Consensus pattern (21 bp):
TTGGAAGGGGAACATTAACCT
Found at i:26092009 original size:9 final size:9
Alignment explanation
Indices: 26091997--26092030 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
26091987 AACAAAATTT
26091997 TAAAAATGG
1 TAAAAATGG
*
26092006 TAAAAATAG
1 TAAAAATGG
*
26092015 AAAAAATGG
1 TAAAAATGG
26092024 TAAAAAT
1 TAAAAAT
26092031 AAACTTTTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.21
Consensus pattern (9 bp):
TAAAAATGG
Found at i:26093860 original size:19 final size:19
Alignment explanation
Indices: 26093836--26093874 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
26093826 GATGAGTATG
26093836 TATGAATTATGAAGTTTTA
1 TATGAATTATGAAGTTTTA
26093855 TATGAATTATGAAGTTTTA
1 TATGAATTATGAAGTTTTA
26093874 T
1 T
26093875 GGAAGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (19 bp):
TATGAATTATGAAGTTTTA
Found at i:26095772 original size:40 final size:40
Alignment explanation
Indices: 26095707--26095917 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
26095697 TCTTCGGAAT
* * * *
26095707 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * *
26095746 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
26095786 TTAGCCCAGAT-ATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
*
26095826 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
26095866 TTAACCCGGATAAAATCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
26095906 TTAGCCCGGATA
1 TTAGCCCGGATA
26095918 TCATTCAAAT
Statistics
Matches: 149, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 5 0.03
40 140 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:26098157 original size:25 final size:25
Alignment explanation
Indices: 26098105--26098194 Score: 76
Period size: 25 Copynumber: 3.6 Consensus size: 25
26098095 CACACCACAA
* * **
26098105 CTCTTATGAGCGTCTCGATAATAGG
1 CTCTTATGAGCTTCCCGATAATTCG
*
26098130 CTCTTATGAGCTTCCC-ATTATTTCG
1 CTCTTATGAGCTTCCCGA-TAATTCG
* *
26098155 CTCTCT-GGAGCTTCCCGATAATTGG
1 CTCT-TATGAGCTTCCCGATAATTCG
*
26098180 CTTTTATGAGCTTCC
1 CTCTTATGAGCTTCC
26098195 AGATTAATGG
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
24 2 0.04
25 47 0.92
26 2 0.04
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.38
Consensus pattern (25 bp):
CTCTTATGAGCTTCCCGATAATTCG
Found at i:26098215 original size:25 final size:25
Alignment explanation
Indices: 26098161--26098230 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
26098151 TTCGCTCTCT
* *
26098161 GGAGCTTCCCGATAATTGGCTTTTA
1 GGAGCTTCCAGATAATTGGCTTTCA
* *
26098186 TGAGCTTCCAGATTAA-TGGCTTTCC
1 GGAGCTTCCAGA-TAATTGGCTTTCA
26098211 GGAGCTTTCC-GAT-ATTGGCT
1 GGAGC-TTCCAGATAATTGGCT
26098231 CTCCAAAGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
23 1 0.03
24 6 0.16
25 23 0.62
26 7 0.19
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (25 bp):
GGAGCTTCCAGATAATTGGCTTTCA
Found at i:26098215 original size:50 final size:50
Alignment explanation
Indices: 26098120--26098294 Score: 133
Period size: 50 Copynumber: 3.5 Consensus size: 50
26098110 ATGAGCGTCT
* * *
26098120 CGATAATAGGCTCTTATGAGCTTCCCATTATTTCGCTCTCTGGAGCTTCC
1 CGATAATTGGCTCTTATGAGCTTCCCATTATATCGCTCTCCGGAGCTTCC
* * * * *
26098170 CGATAATTGGCTTTTATGAGCTTCCAGATTA-ATGGCTTTCCGGAGCTTTC
1 CGATAATTGGCTCTTATGAGCTTCC-CATTATATCGCTCTCCGGAGCTTCC
* * * * * **
26098220 CGAT-ATTGGCTCTCCA-AAGCTTCCCATTACATGGCTCACATGAGCTTCC
1 CGATAATTGGCTCT-TATGAGCTTCCCATTATATCGCTCTCCGGAGCTTCC
* *
26098269 CGTTTA-TGTGCTCTTATGAGCATTCC
1 CGATAATTG-GCTCTTATGAGC-TTCC
26098295 TGAATATGAA
Statistics
Matches: 98, Mismatches: 20, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
48 4 0.04
49 35 0.36
50 51 0.52
51 8 0.08
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.35
Consensus pattern (50 bp):
CGATAATTGGCTCTTATGAGCTTCCCATTATATCGCTCTCCGGAGCTTCC
Found at i:26098687 original size:25 final size:25
Alignment explanation
Indices: 26098658--26098707 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
26098648 AATTGGTAAG
26098658 TTAAATTCAATGTTATACGAACTTA
1 TTAAATTCAATGTTATACGAACTTA
26098683 TTAAATTCAATGTTATACGAACTTA
1 TTAAATTCAATGTTATACGAACTTA
26098708 CTAAGCTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (25 bp):
TTAAATTCAATGTTATACGAACTTA
Found at i:26104359 original size:8 final size:8
Alignment explanation
Indices: 26104346--26104370 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26104336 ATTAGGGACT
26104346 AAAATGTG
1 AAAATGTG
26104354 AAAATGTG
1 AAAATGTG
26104362 AAAATGTG
1 AAAATGTG
26104370 A
1 A
26104371 GGGGTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:26104845 original size:42 final size:43
Alignment explanation
Indices: 26104747--26104892 Score: 134
Period size: 42 Copynumber: 3.4 Consensus size: 43
26104737 TGTTTTTGTT
** * * * *
26104747 TAAGACCACATCTGGGACGTTGGCATCGACT-TATGATTTAGGTG
1 TAAGACCATGTCTGGGACATCGGCATCGA-TATTTGA-TTACGTG
* * *
26104791 TAAGACCATGTCTGGGTCATCGGCATCG-TGTTTGATTTCGTG
1 TAAGACCATGTCTGGGACATCGGCATCGATATTTGATTACGTG
* * *
26104833 TAAGACCCTGTCTGGGACATTGGCATCGATATTTGATTACATG
1 TAAGACCATGTCTGGGACATCGGCATCGATATTTGATTACGTG
* *
26104876 TAAGACTACGTCTGGGA
1 TAAGACCATGTCTGGGA
26104893 TGTTGGCATT
Statistics
Matches: 83, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 31 0.37
43 29 0.35
44 23 0.28
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATCGGCATCGATATTTGATTACGTG
Found at i:26104868 original size:43 final size:42
Alignment explanation
Indices: 26104747--26104901 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 42
26104737 TGTTTTTGTT
** * * *
26104747 TAAGACCACATCTGGGACGTTGGCATCGACTTATGATTTAGGTG
1 TAAGACCATGTCTGGGACATTGGCATCGA-TTTTGATTT-CGTG
* *
26104791 TAAGACCATGTCTGGGTCATCGGCATCG-TGTTTGATTTCGTG
1 TAAGACCATGTCTGGGACATTGGCATCGAT-TTTGATTTCGTG
* * *
26104833 TAAGACCCTGTCTGGGACATTGGCATCGATATTTGATTACATG
1 TAAGACCATGTCTGGGACATTGGCATCGAT-TTTGATTTCGTG
* * **
26104876 TAAGACTACGTCTGGGATGTTGGCAT
1 TAAGACCATGTCTGGGACATTGGCAT
26104902 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
42 29 0.32
43 39 0.43
44 23 0.25
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATTGGCATCGATTTTGATTTCGTG
Found at i:26106418 original size:3 final size:3
Alignment explanation
Indices: 26106410--26106442 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
26106400 TATTCCAATG
26106410 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26106443 GTTTATGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26117542 original size:17 final size:18
Alignment explanation
Indices: 26117510--26117544 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26117500 TATTACTTTA
*
26117510 GCAATTTTTATTTTTATT
1 GCAATTTATATTTTTATT
26117528 GCAATTTAT-TTTTTATT
1 GCAATTTATATTTTTATT
26117545 TTTATTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.66
Consensus pattern (18 bp):
GCAATTTATATTTTTATT
Found at i:26120263 original size:20 final size:20
Alignment explanation
Indices: 26120238--26120289 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
26120228 ATGGGCGAGG
26120238 CACACGGCCGTGTGTTCGGA
1 CACACGGCCGTGTGTTCGGA
26120258 CACACGGCCGTGTGTTCGGA
1 CACACGGCCGTGTGTTCGGA
*
26120278 CACACGGGCGTG
1 CACACGGCCGTG
26120290 AGTTATACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.15, C:0.31, G:0.37, T:0.17
Consensus pattern (20 bp):
CACACGGCCGTGTGTTCGGA
Found at i:26121459 original size:31 final size:31
Alignment explanation
Indices: 26121324--26121462 Score: 206
Period size: 31 Copynumber: 4.5 Consensus size: 31
26121314 CAGTACAATT
* * * * *
26121324 TGGGCCAAAGCCCTTCCATAAACCATATCAT
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
* *
26121355 TGGGCCGAAGCATTTTCATAAATCATCTCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
*
26121386 TGGGCCGAAGCTTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
26121417 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
26121448 TGGGCCGAAGCCTTT
1 TGGGCCGAAGCCTTT
26121463 ACTGTAAACG
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 98 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAC
Found at i:26121535 original size:42 final size:42
Alignment explanation
Indices: 26121488--26121577 Score: 171
Period size: 42 Copynumber: 2.1 Consensus size: 42
26121478 GCCCTTAGGA
*
26121488 CCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGC
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
26121530 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
26121572 CCATTT
1 CCATTT
26121578 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
Found at i:26121753 original size:25 final size:26
Alignment explanation
Indices: 26121725--26121794 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 26
26121715 CTCTTTTAAT
26121725 AACTGGGGCAAAGCCCTTTCT-GATA
1 AACTGGGGCAAAGCCCTTTCTCGATA
* *
26121750 AACTGAGGCAAAGCCCTTT-TCGGTA
1 AACTGGGGCAAAGCCCTTTCTCGATA
*
26121775 AACTGGGGCAGAGCCCTTTC
1 AACTGGGGCAAAGCCCTTTC
26121795 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTCTCGATA
Found at i:26122674 original size:27 final size:27
Alignment explanation
Indices: 26122601--26122665 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
26122591 GGGCATATTC
* *
26122601 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCCTACAGGGGCT-TTACG
26122628 GTCATTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCCTACAGGGGCTTTACG
*
26122655 GTCTTTTTACC
1 GTCATTTTACC
26122666 TATTAGGGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCTTTACG
Found at i:26122817 original size:27 final size:27
Alignment explanation
Indices: 26122723--26122932 Score: 108
Period size: 27 Copynumber: 7.7 Consensus size: 27
26122713 ATCTACAAAC
* *
26122723 CAGGGGTATTTCAGTAATTTTGT-AAT
1 CAGGGGTATTTCTGTAATTTTATAAAT
** * *
26122749 CTAATGGTATTTCTATAATTTTTAAAAAGT
1 C-AGGGGTATTTCTGTAA-TTTTATAAA-T
* *
26122779 CAAGGGTATTT-TGTAATTTTGTAAAT
1 CAGGGGTATTTCTGTAATTTTATAAAT
* * *
26122805 CAGGGGTATTTTTATAATTTTACAAAT
1 CAGGGGTATTTCTGTAATTTTATAAAT
** * * *
26122832 TGGGGGTATTTCGGTAATTTCATAAAC
1 CAGGGGTATTTCTGTAATTTTATAAAT
* *
26122859 CAGTGGTATTT-TGGTAATTTTACAAA-
1 CAGGGGTATTTCT-GTAATTTTATAAAT
* * **
26122885 CTAAGGGTATTT-TGGTAATTCTAT-CCT
1 C-AGGGGTATTTCT-GTAATTTTATAAAT
*
26122912 ACAGGGGTATTTCAGTAATTT
1 -CAGGGGTATTTCTGTAATTT
26122933 CACAATCGAG
Statistics
Matches: 137, Mismatches: 37, Indels: 19
0.71 0.19 0.10
Matches are distributed among these distances:
26 13 0.09
27 102 0.74
28 9 0.07
29 11 0.08
30 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.43
Consensus pattern (27 bp):
CAGGGGTATTTCTGTAATTTTATAAAT
Found at i:26122867 original size:54 final size:53
Alignment explanation
Indices: 26122754--26122904 Score: 142
Period size: 54 Copynumber: 2.8 Consensus size: 53
26122744 GTAATCTAAT
* * * ** *
26122754 GGTATTTCT-ATAATTTTTAAAAAGTCAAGGGTATTTTGTAATTTTGTAAATCAGG
1 GGTATTT-TGATAA-TTTTACAAACT-AAGGGTATTTGGTAATTTCATAAACCAGG
* * ** *
26122809 GGTATTTTTATAATTTTACAAATTGGGGGTATTTCGGTAATTTCATAAACCAGT
1 GGTATTTTGATAATTTTACAAACTAAGGGTATTT-GGTAATTTCATAAACCAGG
*
26122863 GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATT
1 GGTATTTTGATAATTTTACAAACTAAGGGTA-TTTGGTAATT
26122905 CTATCCTACA
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
53 8 0.10
54 57 0.72
55 14 0.18
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (53 bp):
GGTATTTTGATAATTTTACAAACTAAGGGTATTTGGTAATTTCATAAACCAGG
Found at i:26122966 original size:27 final size:27
Alignment explanation
Indices: 26122936--26123093 Score: 176
Period size: 27 Copynumber: 5.9 Consensus size: 27
26122926 GTAATTTCAC
* *
26122936 AATCGAGGGTAAAACGATAATTTTGCA
1 AATCGAGGGTAAAACGATAATTCTGTA
26122963 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* * *
26122990 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
* * *
26123017 AATTGAGGGTAAAATTG-TAATTTTGTA
1 AATCGAGGGTAAAA-CGATAATTCTGTA
* *
26123044 AATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
* * *
26123071 AATC-AAGGTAAAATGGTAATTCT
1 AATCGAGGGTAAAACGATAATTCT
26123094 ACAAATTGAG
Statistics
Matches: 112, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
26 16 0.14
27 94 0.84
28 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:26123048 original size:81 final size:80
Alignment explanation
Indices: 26122940--26123105 Score: 253
Period size: 81 Copynumber: 2.1 Consensus size: 80
26122930 TTTCACAATC
* *
26122940 GAGGGTAAAACGATAATTTTGCAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAT
1 GAGGGTAAAACGATAATTTTGCAAATCGAGGGTAAAACGATAATTCTATAAATC-AAGGTAAAAT
*
26123005 GGTAATTCTATAAATT
65 GGTAATTCTACAAATT
* * *
26123021 GAGGGTAAAATTG-TAATTTTGTAAATCGAGGGTGAAACGATAATTCTATAAATCAAGGTAAAAT
1 GAGGGTAAAA-CGATAATTTTGCAAATCGAGGGTAAAACGATAATTCTATAAATCAAGGTAAAAT
26123085 GGTAATTCTACAAATT
65 GGTAATTCTACAAATT
26123101 GAGGG
1 GAGGG
26123106 CATTTCAGTA
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
80 29 0.37
81 48 0.62
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (80 bp):
GAGGGTAAAACGATAATTTTGCAAATCGAGGGTAAAACGATAATTCTATAAATCAAGGTAAAATG
GTAATTCTACAAATT
Found at i:26125391 original size:31 final size:31
Alignment explanation
Indices: 26125340--26125423 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
26125330 TTAGTCTTGA
* *
26125340 CATAT-ACTGGGCTGAAGCCTTTCCATAAAT
1 CATATCACTGAGCCGAAGCCTTTCCATAAAT
* *
26125370 CTTATCACTGAGCCGAAGCCTTTTCATAAAT
1 CATATCACTGAGCCGAAGCCTTTCCATAAAT
*
26125401 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGAGCCGAAGCCTTT
26125424 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGAGCCGAAGCCTTTCCATAAAT
Found at i:26125510 original size:42 final size:42
Alignment explanation
Indices: 26125451--26125538 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
26125441 CCTTAGGACT
* *
26125451 ATTTCAATATCACATGTATTGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
* *
26125493 ATTTCAATATCGCATGTAATGTCAATGAATGTATGCAAGCCT
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
26125535 ATTT
1 ATTT
26125539 GGGGAGACTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (42 bp):
ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
Found at i:26125714 original size:25 final size:25
Alignment explanation
Indices: 26125686--26125755 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
26125676 CTCTTTTAAT
*
26125686 AACTGGGGCAAAGCTC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* *
26125711 AACTGGGTCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
26125736 AACTGGGTCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
26125756 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:26126594 original size:27 final size:27
Alignment explanation
Indices: 26126564--26126628 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
26126554 GGGCATATTC
26126564 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
26126591 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
26126618 GTCTTTTTACC
1 GTCATTTTACC
26126629 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:26126712 original size:27 final size:27
Alignment explanation
Indices: 26126682--26126788 Score: 92
Period size: 27 Copynumber: 3.9 Consensus size: 27
26126672 GCAAATCTAC
*
26126682 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
* * *
26126709 AAACTAATGGCATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
26126735 AAAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* * *
26126765 AAATCAGGGGTATTT-TGTAATTTT
1 AAACCAAGGGTATTTCTATAATTTT
26126789 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 10, Indels: 9
0.78 0.12 0.11
Matches are distributed among these distances:
26 10 0.15
27 32 0.48
28 6 0.09
29 17 0.26
30 1 0.02
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:26126800 original size:27 final size:26
Alignment explanation
Indices: 26126731--26126867 Score: 107
Period size: 27 Copynumber: 5.1 Consensus size: 26
26126721 TTTCTATAAT
* *
26126731 TTTTAAAAAGTCAAGGGTATTTCTGTAA
1 TTTTACAAA-TCAGGGGTATTT-TGTAA
**
26126759 TTTTGTAAATCAGGGGTATTTTGTAA
1 TTTTACAAATCAGGGGTATTTTGTAA
* *
26126785 TTTTACAAAT-TGAGGGTATTTCGGTAA
1 TTTTACAAATCAG-GGGTATTT-TGTAA
* * * *
26126812 TTTCATAAACCAGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTT-GTAA
26126839 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTT-GTAA
26126866 TT
1 TT
26126868 CTATCCTACA
Statistics
Matches: 88, Mismatches: 16, Indels: 11
0.77 0.14 0.10
Matches are distributed among these distances:
25 1 0.01
26 22 0.25
27 57 0.65
28 8 0.09
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (26 bp):
TTTTACAAATCAGGGGTATTTTGTAA
Found at i:26126886 original size:54 final size:53
Alignment explanation
Indices: 26126744--26126867 Score: 160
Period size: 53 Copynumber: 2.3 Consensus size: 53
26126734 TAAAAAGTCA
* ** * *
26126744 AGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTCATAAACCAGGGGTATTTTGTAATTTTACAAATAG
*
26126797 AGGGTATTTCGGTAATTTCATAAACCAGTGGTATTTTGGTAATTTTACAAACTAG
1 AGGGTATTTCGGTAATTTCATAAACCAGGGGTATTTT-GTAATTTTACAAA-TAG
*
26126852 -GGGTATTTTGGTAATT
1 AGGGTATTTCGGTAATT
26126868 CTATCCTACA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
53 32 0.52
54 28 0.45
55 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTCATAAACCAGGGGTATTTTGTAATTTTACAAATAG
Found at i:26126893 original size:54 final size:53
Alignment explanation
Indices: 26126744--26126909 Score: 142
Period size: 54 Copynumber: 3.1 Consensus size: 53
26126734 TAAAAAGTCA
* ** * * *
26126744 AGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTCATAAACCAGGGGTATTTAGTAATTTTACAAATAG
* *
26126797 AGGGTATTTCGGTAATTTCATAAACCAGTGGTATTTTGGTAATTTTACAAACTAG
1 AGGGTATTTCGGTAATTTCATAAACCAGGGGTA-TTTAGTAATTTTACAAA-TAG
* ** * *
26126852 -GGGTATTTTGGTAA-TTC-TATCCTACAGGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTCATAAAC--CAGGGGTATTT-AGTAATTTTACAAATAG
26126904 AGGGTA
1 AGGGTA
26126910 AAATGATAAT
Statistics
Matches: 93, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
52 5 0.05
53 41 0.44
54 45 0.48
55 2 0.02
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTCATAAACCAGGGGTATTTAGTAATTTTACAAATAG
Found at i:26126907 original size:27 final size:26
Alignment explanation
Indices: 26126766--26126907 Score: 76
Period size: 27 Copynumber: 5.3 Consensus size: 26
26126756 TAATTTTGTA
* *
26126766 AATCAGGGGTATTT-TGTAATTTTAC
1 AATCAGGGGTATTTCGGTAATTTCAC
* *
26126791 AAAT-TGAGGGTATTTCGGTAATTTCATA
1 -AATCAG-GGGTATTTCGGTAATTTCA-C
* * * *
26126819 AACCAGTGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTCGGTAATTTCAC
* *
26126845 AAACTAGGGGTATTTTGGTAA-TTCTATC
1 AATC-AGGGGTATTTCGGTAATTTC-A-C
* *
26126873 -CTACAGGGGTATTTCAGTAATTTCAC
1 AAT-CAGGGGTATTTCGGTAATTTCAC
26126899 AATCGAGGG
1 AATC-AGGG
26126908 TAAAATGATA
Statistics
Matches: 87, Mismatches: 18, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
25 1 0.01
26 18 0.21
27 62 0.71
28 6 0.07
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (26 bp):
AATCAGGGGTATTTCGGTAATTTCAC
Found at i:26126929 original size:27 final size:27
Alignment explanation
Indices: 26126899--26127069 Score: 207
Period size: 27 Copynumber: 6.3 Consensus size: 27
26126889 GTAATTTCAC
* * **
26126899 AATCGAGGGTAAAATGATAATTTTGCA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
26126926 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
26126953 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
26126980 AATTGAGGGTAAAATTGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
26127007 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
26127034 AATTGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
26127061 AATTGAGGG
1 AATCGAGGG
26127070 CATTTCATTA
Statistics
Matches: 126, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:26127010 original size:81 final size:81
Alignment explanation
Indices: 26126903--26127069 Score: 255
Period size: 81 Copynumber: 2.1 Consensus size: 81
26126893 TTTCACAATC
* *
26126903 GAGGGTAAAATGATAATTTTGCAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAT
1 GAGGGTAAAATGATAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
*
26126968 GGTAATTCTATAAATT
66 GGTAATTCTACAAATT
* * * *
26126984 GAGGGTAAAATTG-TAATTTTATAAATCGAGGGTGAAACGGTAATTCTATAAATTGAGGGTAAAA
1 GAGGGTAAAA-TGATAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAA
26127048 TGGTAATTCTACAAATT
65 TGGTAATTCTACAAATT
26127065 GAGGG
1 GAGGG
26127070 CATTTCATTA
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
81 76 0.97
82 2 0.03
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.30
Consensus pattern (81 bp):
GAGGGTAAAATGATAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
GGTAATTCTACAAATT
Found at i:26129077 original size:953 final size:951
Alignment explanation
Indices: 26127233--26129147 Score: 3634
Period size: 953 Copynumber: 2.0 Consensus size: 951
26127223 AATATTTACT
26127233 ACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCCATTAGGCCCACATGACCCCTTCCGGC
1 ACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCCATTAGGCCCACATGACCCCTTCCGGC
26127298 CCATCGCGGCCTGAAGTAGCCATCCTACAGCTAGAGTAGCGAGAAAATACACACCTGATAGGAGA
66 CCATCGCGGCCTGAAGTAGCCATCCTACAGCTAGAGTAGCGAGAAAATACACACCTGATAGGAGA
26127363 CTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCCCAACCCAAACGAGCACGCCATACAG
131 CTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCCCAACCCAAACGAGCACGCCATACAG
26127428 CGAAAGGGATTAGCCAAGAAAAGGTACCTTTACTCTCCTCATGGTTCCCTCTATTTAAAGCCAGC
196 CGAAAGGGATTAGCCAAGAAAAGGTACCTTTACTCTCCTCATGGTTCCCTCTATTTAAAGCCAGC
26127493 TTCGCAACCACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCCAACATCAGAGTTTAAATTCAA
261 TTCGCAACCACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCCAACATCAGAGTTTAAATTCAA
*
26127558 CACCAACTCTTGCCGCCCCCTGTTAGCAAAATAAATGCTCCTTGCTTGCCATGGGATTCGAACCC
326 CACCAACTCTTGCCGCCCCCTATTAGCAAAATAAATGCTCCTTGCTTGCCATGGGATTCGAACCC
26127623 ATGCCTCCCCTCAAATGCTCCACACGCTACTTGCCACTAAGCCACAAGGCTTTTTGTGTCATATT
391 ATGCCTCCCCTCAAATGCTCCACACGCTACTTGCCACTAAGCCACAAGGCTTTTTGTGTCATATT
* *
26127688 TTATCCCCAATTAGTTATAAGGTCTAAAGGCCAAAGTCTAGGTTCCCTTAAAAAAAAACGAAAAT
456 TTATCCCCAATTAGTTATAAGGTCTAAAGGCCAAAGTCCAGGTTCCCTTAAAAAAAAACCAAAAT
26127753 AAATTGCAAGAGCCAAGGCTTGAACCCAGGCTCCCATACAACCTTAATGACGCCACAACCACTAG
521 AAATTGCAAGAGCCAAGGCTTGAACCCAGGCTCCCATACAACCTTAATGACGCCACAACCACTAG
26127818 ACTACAAGCTTCCTTGTGTCATTTATTTAACACAATAATTTAAAAACCCTCATCCAAGCATCGAG
586 ACTACAAGCTTCCTTGTGTCATTTATTTAACACAATAATTTAAAAACCCTCATCCAAGCATCGAG
*
26127883 GTTTTTTTTTTCACTTAATACCAAAATTTTTGCAAAAGCCCAAGTTTGAACCCAAGATTTCTCTA
651 GTTCTTTTTTTCACTTAATACCAAAATTTTTGCAAAAGCCCAAGTTTGAACCCAAGATTTCTCTA
*
26127948 ACACTTCTCAGGGCCATTAACCATCAAAGCAGACATTTAATTGTGTTATTTCATTGCACAATTAA
716 ACACTTCTCAGGGCCATTAACCACCAAAGCAGACATTTAATTGTGTTATTTCATTGCACAATTAA
* *
26128013 ATACCTATATACAACCTTCTTACGGACCCGCACTCAAGGCCCAATACTTCTAGGCCCAAATTCGG
781 ATACCTATATACAACCTCCTTACGGACCCACACTCAAGGCCCAATACTTCTAGGCCCAAATTCGG
26128078 GGTGTTACAATTCTACCCCCTTAAAGAAATTTCGTCCTTGAAATTTTCCACTCTCAGACTACACC
846 GGTGTTACAATTCTACCCCCTTAAAGAAATTTCGTCCTTGAAATTTTCCACTCTCAGACTACACC
26128143 GA-AACACTTCCGCTGTGCACTCTGATACTAATAATACTAAC
911 -ACAACACTTCCGCTGTGCACTCTGATACTAATAATACTAAC
26128184 ACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCCATTAGGCCCACATGACCCCTTCCGGC
1 ACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCCATTAGGCCCACATGACCCCTTCCGGC
26128249 CCATCGCGGCCTGAAGTAGCCATCCTACAGCTAGAGTAGCGAGAAAATACACACCTGATAGGAGA
66 CCATCGCGGCCTGAAGTAGCCATCCTACAGCTAGAGTAGCGAGAAAATACACACCTGATAGGAGA
26128314 CTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCCCAACCCAAACGAGCACGCCATACAG
131 CTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCCCAACCCAAACGAGCACGCCATACAG
26128379 CGAAAGGGATTAGCCAAGAAAAAGGTACCTTTACTCTCCTCATGGTTCCCTCTATTTAAAGCCAG
196 CGAAAGGGATTAGCCAAG-AAAAGGTACCTTTACTCTCCTCATGGTTCCCTCTATTTAAAGCCAG
* *
26128444 CTTTGCAACCACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCTAACATCAGAGTTTAAATTCA
260 CTTCGCAACCACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCCAACATCAGAGTTTAAATTCA
*
26128509 ACACCAACTCTTGCCGCCCCCTATTAGCAAAATAAATGCTCCTTTCTTGCCATGGGATTCGAACC
325 ACACCAACTCTTGCCGCCCCCTATTAGCAAAATAAATGCTCCTTGCTTGCCATGGGATTCGAACC
* *
26128574 CATGCCTCCCCTCAGATGCTCCACACGCTACTTGCCAGTAAGCCACAAGGCTTTTTGTGTCATAT
390 CATGCCTCCCCTCAAATGCTCCACACGCTACTTGCCACTAAGCCACAAGGCTTTTTGTGTCATAT
*
26128639 TTTATCCCCGATTAGTTATAAGGTCTAAAGGCCAAAGTCCAGGTTCCCTTAAGAAAAAAACCAAA
455 TTTATCCCCAATTAGTTATAAGGTCTAAAGGCCAAAGTCCAGGTTCCCTTAA-AAAAAAACCAAA
26128704 ATAAATTGCAAGAGCCAAGGCTTGAACCCAGGCTCCCATACAACCTTAATGACGCCACAACCACT
519 ATAAATTGCAAGAGCCAAGGCTTGAACCCAGGCTCCCATACAACCTTAATGACGCCACAACCACT
26128769 AGACTACAAGCTTCCTTGTGTCATTTATTTAACACAATAATTTAAAAACCCTCATCCAAGCATCG
584 AGACTACAAGCTTCCTTGTGTCATTTATTTAACACAATAATTTAAAAACCCTCATCCAAGCATCG
* *
26128834 AGGTTCTTTTTTTCACTTAATACCAAAATTTTTGCTAAAGCCCAAGTTTTAACCCAAGATTTCTC
649 AGGTTCTTTTTTTCACTTAATACCAAAATTTTTGCAAAAGCCCAAGTTTGAACCCAAGATTTCTC
26128899 TAACACTTCTCAGGGCCATTAACCACCAAAGCAGACATTTAATTGTGTTATTTCATTGCACAATT
714 TAACACTTCTCAGGGCCATTAACCACCAAAGCAGACATTTAATTGTGTTATTTCATTGCACAATT
26128964 AAATACCTATATACAACCTCCTTACGGACCCACACTCAAGGCCCAATACTTCTAGGCCCAAATTC
779 AAATACCTATATACAACCTCCTTACGGACCCACACTCAAGGCCCAATACTTCTAGGCCCAAATTC
26129029 GGGGTGTTACAATTCTACCCCCTTAAAGAAATTTCGTCCTTGAAATTTTCCACTCTCAGACTACA
844 GGGGTGTTACAATTCTACCCCCTTAAAGAAATTTCGTCCTTGAAATTTTCCACTCTCAGACTACA
*
26129094 CCACCACACTTCCGCTGTGCACTCTGATACTAATAATACTAAC
909 CCACAACACTTCCGCTGTGCACTCTGATACTAATAATACTAAC
* *
26129137 ATACAACCAAA
1 ACACAATCAAA
26129148 TCATTTGTCC
Statistics
Matches: 943, Mismatches: 18, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
951 213 0.23
952 286 0.30
953 444 0.47
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (951 bp):
ACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCCATTAGGCCCACATGACCCCTTCCGGC
CCATCGCGGCCTGAAGTAGCCATCCTACAGCTAGAGTAGCGAGAAAATACACACCTGATAGGAGA
CTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCCCAACCCAAACGAGCACGCCATACAG
CGAAAGGGATTAGCCAAGAAAAGGTACCTTTACTCTCCTCATGGTTCCCTCTATTTAAAGCCAGC
TTCGCAACCACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCCAACATCAGAGTTTAAATTCAA
CACCAACTCTTGCCGCCCCCTATTAGCAAAATAAATGCTCCTTGCTTGCCATGGGATTCGAACCC
ATGCCTCCCCTCAAATGCTCCACACGCTACTTGCCACTAAGCCACAAGGCTTTTTGTGTCATATT
TTATCCCCAATTAGTTATAAGGTCTAAAGGCCAAAGTCCAGGTTCCCTTAAAAAAAAACCAAAAT
AAATTGCAAGAGCCAAGGCTTGAACCCAGGCTCCCATACAACCTTAATGACGCCACAACCACTAG
ACTACAAGCTTCCTTGTGTCATTTATTTAACACAATAATTTAAAAACCCTCATCCAAGCATCGAG
GTTCTTTTTTTCACTTAATACCAAAATTTTTGCAAAAGCCCAAGTTTGAACCCAAGATTTCTCTA
ACACTTCTCAGGGCCATTAACCACCAAAGCAGACATTTAATTGTGTTATTTCATTGCACAATTAA
ATACCTATATACAACCTCCTTACGGACCCACACTCAAGGCCCAATACTTCTAGGCCCAAATTCGG
GGTGTTACAATTCTACCCCCTTAAAGAAATTTCGTCCTTGAAATTTTCCACTCTCAGACTACACC
ACAACACTTCCGCTGTGCACTCTGATACTAATAATACTAAC
Found at i:26130304 original size:31 final size:31
Alignment explanation
Indices: 26130263--26130346 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
26130253 TTAGTCTTGA
*
26130263 CATAT-ACTGGGCTGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
26130293 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
26130324 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
26130347 ACTGTAAACG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:26130421 original size:42 final size:42
Alignment explanation
Indices: 26130374--26130461 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
26130364 CCTTAGGACT
*
26130374 ATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
* *
26130416 ATTTCAATATCGCATGTAATGTCAATGAATGTATGCAAGCCT
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
26130458 ATTT
1 ATTT
26130462 AGGGAGACTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (42 bp):
ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
Found at i:26130637 original size:25 final size:25
Alignment explanation
Indices: 26130609--26130678 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
26130599 CTCTTTTAAT
*
26130609 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGTCAAAGCCCTTTTC-GATA
*
26130634 AACTGGGTCAAAGCCCTTTTCGGTA
1 AACTGGGTCAAAGCCCTTTTCGATA
*
26130659 AACTGGGTCAGAGCCCTTTT
1 AACTGGGTCAAAGCCCTTTT
26130679 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGTCAAAGCCCTTTTCGATA
Found at i:26131517 original size:27 final size:27
Alignment explanation
Indices: 26131487--26131551 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
26131477 GGGCATATTC
*
26131487 GTCATTTTATCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
26131514 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
26131541 GTCTTTTTACC
1 GTCATTTTACC
26131552 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:26131635 original size:27 final size:27
Alignment explanation
Indices: 26131605--26131712 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
26131595 GTAAATCTAC
*
26131605 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
* * * **
26131632 AAACTAATGGCATTTCTATAATTTTCAA
1 AAACCAAGGGTATTTCTATAATTTT-GT
* *
26131660 AAAGTCAAGGGTATTTCTGTAATTTTGT
1 AAA-CCAAGGGTATTTCTATAATTTTGT
* * * *
26131688 AAATCAGGGGTATTTTTGTAATTTT
1 AAACCAAGGGTATTTCTATAATTTT
26131713 ACAAATTGAG
Statistics
Matches: 64, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
27 41 0.64
28 6 0.09
29 17 0.27
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:26131710 original size:56 final size:54
Alignment explanation
Indices: 26131609--26131738 Score: 127
Period size: 56 Copynumber: 2.4 Consensus size: 54
26131599 ATCTACAAAC
* *
26131609 CAAGGGTATTTCAATAATTTTGTAAACTAATGGCATTTCTATAATTTTCAAAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAACTAAGGGCATTTCTATAATTTT-AAAAA-T
* * * * * *
26131665 CAAGGGTATTTCTGTAATTTTGTAAA-TCAGGGGTATTTTTGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAACT-AAGGGCATTTCTATAATTTTAAAAAT
** *
26131719 TGAGGGTATTTCGGTAATTT
1 CAAGGGTATTTCAGTAATTT
26131739 CACAAACCAT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 18 0.29
55 5 0.08
56 39 0.63
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAATTTTGTAAACTAAGGGCATTTCTATAATTTTAAAAAT
Found at i:26131718 original size:27 final size:27
Alignment explanation
Indices: 26131650--26131793 Score: 98
Period size: 27 Copynumber: 5.3 Consensus size: 27
26131640 GGCATTTCTA
* * *
26131650 TAATTTTCAAAAAGTCAAGGGTATTTCTG
1 TAATTTT-ACAAA-TCAGGGGTATTTTTG
**
26131679 TAATTTTGTAAATCAGGGGTATTTTTG
1 TAATTTTACAAATCAGGGGTATTTTTG
* **
26131706 TAATTTTACAAAT-TGAGGGTATTTCGG
1 TAATTTTACAAATCAG-GGGTATTTTTG
* * ** *
26131733 TAATTTCACAAACCATTGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTTG
26131760 TAATTTTACAAA-CTA-GGGTA-TTTTG
1 TAATTTTACAAATC-AGGGGTATTTTTG
26131785 ATAATTTTA
1 -TAATTTTA
26131794 TCCTACAGGG
Statistics
Matches: 93, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
25 4 0.04
26 14 0.15
27 65 0.70
28 3 0.03
29 7 0.08
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.43
Consensus pattern (27 bp):
TAATTTTACAAATCAGGGGTATTTTTG
Done.