Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 76 of 318
Found at i:26131789 original size:26 final size:26
Alignment explanation
Indices: 26131695--26131793 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 26
26131685 TGTAAATCAG
* *
26131695 GGGTATTTTTGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACT-A
* * *
26131722 GGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAACTA
*
26131748 TTGGTATTTTGGTAATTTTACAAACTA
1 -GGGTATTTTGGTAATTTTACAAACTA
*
26131775 GGGTATTTTGATAATTTTA
1 GGGTATTTTGGTAATTTTA
26131794 TCCTACAGGG
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
26 18 0.30
27 42 0.70
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.44
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:26131807 original size:53 final size:53
Alignment explanation
Indices: 26131692--26131832 Score: 131
Period size: 53 Copynumber: 2.6 Consensus size: 53
26131682 TTTTGTAAAT
* * *
26131692 CAGGGGTATTTTTGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAGGGGTATTTTAGTAATTTTACAAACT-AGGGTATTTCGATAATTTCACAAAC
** * * * **
26131746 CATTGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGATAATTTTATCCTA-
1 CAGGGGTATTTTAGTAATTTTACAAACTAGGGTATTTCGATAATTTCA-CAAAC
* * * *
26131799 CAGGGGTATTTCAGTAATTTCACAATCGAGGGTA
1 CAGGGGTATTTTAGTAATTTTACAAACTAGGGTA
26131833 AAATGATAAT
Statistics
Matches: 70, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
53 44 0.63
54 26 0.37
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (53 bp):
CAGGGGTATTTTAGTAATTTTACAAACTAGGGTATTTCGATAATTTCACAAAC
Found at i:26131852 original size:27 final size:27
Alignment explanation
Indices: 26131822--26131992 Score: 225
Period size: 27 Copynumber: 6.3 Consensus size: 27
26131812 GTAATTTCAC
* * **
26131822 AATCGAGGGTAAAATGATAATTTTGCA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
26131849 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
26131876 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
26131903 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
26131930 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
26131957 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
26131984 AATCGAGGG
1 AATCGAGGG
26131993 CATTTCAATA
Statistics
Matches: 127, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:26131933 original size:81 final size:81
Alignment explanation
Indices: 26131822--26131992 Score: 279
Period size: 81 Copynumber: 2.1 Consensus size: 81
26131812 GTAATTTCAC
*
26131822 AATCGAGGGTAAAATGATAATTTTGCAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGATAATTTTGCAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
*
26131887 AAATGGTAATTCTATA
66 AAATGGTAATTCTACA
* * * * *
26131903 AATTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAATGATAATTTTGCAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
26131968 AAATGGTAATTCTACA
66 AAATGGTAATTCTACA
26131984 AATCGAGGG
1 AATCGAGGG
26131993 CATTTCAATA
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGATAATTTTGCAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
AAATGGTAATTCTACA
Found at i:26133345 original size:17 final size:17
Alignment explanation
Indices: 26133317--26133358 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
26133307 ATTGAGTCCA
26133317 TTTATCTTTATGTTTATT
1 TTTAT-TTTATGTTTATT
26133335 TTTATTTTATGTTTATT
1 TTTATTTTATGTTTATT
26133352 TTT-TTTT
1 TTTATTTT
26133359 CCTATTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 4 0.17
17 15 0.62
18 5 0.21
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTATTTTATGTTTATT
Found at i:26133349 original size:23 final size:21
Alignment explanation
Indices: 26133317--26133358 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
26133307 ATTGAGTCCA
26133317 TTTATCTTTATGTTTATTTTTAT
1 TTTATCTTTAT-TTT-TTTTTAT
*
26133340 TTTATGTTTATTTTTTTTT
1 TTTATCTTTATTTTTTTTT
26133359 CCTATTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 3 0.17
23 10 0.56
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (21 bp):
TTTATCTTTATTTTTTTTTAT
Found at i:26141707 original size:39 final size:39
Alignment explanation
Indices: 26141653--26141731 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
26141643 ACATTCAGTG
*
26141653 ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
1 ATTATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGA
26141692 ATTATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGA
1 ATTATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGA
26141731 A
1 A
26141732 ATATGTCTGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATTATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGA
Found at i:26145211 original size:22 final size:23
Alignment explanation
Indices: 26145185--26145230 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
26145175 CAACCAAACC
26145185 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
26145207 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
26145230 A
1 A
26145231 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:26145236 original size:23 final size:23
Alignment explanation
Indices: 26145192--26145236 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26145182 ACCAATTCAA
*
26145192 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
26145215 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
26145237 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:26160457 original size:12 final size:12
Alignment explanation
Indices: 26160433--26160471 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
26160423 TTAAAAAGTT
26160433 TAAACAAATAAA
1 TAAACAAATAAA
26160445 TAAA-AAATGAAA
1 TAAACAAAT-AAA
*
26160457 TAAGCAAATAAA
1 TAAACAAATAAA
26160469 TAA
1 TAA
26160472 GTAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 4 0.17
12 16 0.67
13 4 0.17
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (12 bp):
TAAACAAATAAA
Found at i:26160472 original size:12 final size:12
Alignment explanation
Indices: 26160437--26160480 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
26160427 AAAGTTTAAA
26160437 CAAATAAATAA-
1 CAAATAAATAAG
*
26160448 AAAATGAAATAAG
1 CAAAT-AAATAAG
26160461 CAAATAAATAAG
1 CAAATAAATAAG
*
26160473 TAAATAAA
1 CAAATAAA
26160481 AAATAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 4 0.14
12 20 0.71
13 4 0.14
ACGTcount: A:0.70, C:0.05, G:0.07, T:0.18
Consensus pattern (12 bp):
CAAATAAATAAG
Found at i:26160506 original size:3 final size:3
Alignment explanation
Indices: 26160498--26160614 Score: 96
Period size: 3 Copynumber: 38.7 Consensus size: 3
26160488 ATAAAATGAC
* * *
26160498 AAT AAT AAT GAT AAT AAAT AAT AGT AAT GAT AAT AAAT AAT -AT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * * * *
26160544 AAT AAT AGT AAT AAT AAT AGT CAT AAT AGT AAT GAT AAT AA- ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
*
26160589 AAGT AAT AGT AA- AAT AAT AAT AAT AA
1 AA-T AAT AAT AAT AAT AAT AAT AAT AA
26160615 ATAAACTAAT
Statistics
Matches: 89, Mismatches: 18, Indels: 14
0.74 0.15 0.12
Matches are distributed among these distances:
2 5 0.06
3 74 0.83
4 10 0.11
ACGTcount: A:0.60, C:0.01, G:0.08, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26160530 original size:12 final size:12
Alignment explanation
Indices: 26160487--26160584 Score: 71
Period size: 12 Copynumber: 8.4 Consensus size: 12
26160477 TAAAAAATAA
*
26160487 AATAA-AATGAC
1 AATAATAATGAT
26160498 AATAATAATGAT
1 AATAATAATGAT
26160510 AATAAATAAT-AGT
1 AAT-AATAATGA-T
*
26160523 AATGATAAT-A-
1 AATAATAATGAT
*
26160533 AATAAT-ATAAT
1 AATAATAATGAT
* *
26160544 AATAATAGTAAT
1 AATAATAATGAT
* *
26160556 AATAATAGTCAT
1 AATAATAATGAT
*
26160568 AATAGTAATGAT
1 AATAATAATGAT
26160580 AATAA
1 AATAA
26160585 ATATAAGTAA
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
9 2 0.03
10 6 0.08
11 11 0.15
12 43 0.60
13 10 0.14
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (12 bp):
AATAATAATGAT
Found at i:26160574 original size:51 final size:51
Alignment explanation
Indices: 26160515--26160613 Score: 148
Period size: 51 Copynumber: 1.9 Consensus size: 51
26160505 ATGATAATAA
*
26160515 ATAATAGTAATGATAATAAATA-ATA-TAATAATAATAGTAATAATAATAGTC
1 ATAATAGTAATGATAATAAATATA-AGTAATAATAA-AATAATAATAATAGTC
*
26160566 ATAATAGTAATGATAATAAATATAAGTAATAGTAAAATAATAATAATA
1 ATAATAGTAATGATAATAAATATAAGTAATAATAAAATAATAATAATA
26160614 AATAAACTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
51 35 0.80
52 9 0.20
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (51 bp):
ATAATAGTAATGATAATAAATATAAGTAATAATAAAATAATAATAATAGTC
Found at i:26161364 original size:7 final size:7
Alignment explanation
Indices: 26161354--26161378 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26161344 CGAAAAGAAA
26161354 AAAAAAG
1 AAAAAAG
26161361 AAAAAAG
1 AAAAAAG
26161368 AAAAAAG
1 AAAAAAG
26161375 AAAA
1 AAAA
26161379 TACCTTGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:26162361 original size:177 final size:175
Alignment explanation
Indices: 26162149--26162599 Score: 505
Period size: 177 Copynumber: 2.5 Consensus size: 175
26162139 GAGATTCGCT
* * * *
26162149 ATCTTCAGCCTGCTCCAC-TGCTACCCTAAGGAGATAAAGCTGGTGGCTTAAATCTGCTCCCTTG
1 ATCTTCAGCCTGCTCC-CTTGCTACCCTAAGGAGATAAGGCTAGTGGCTAAAATCTACTCCC-TG
26162213 CTACCTCGGGAAGATAAGATTCACCGCTTTCGATCTACCCCACTGCTAACTCGAGGAGACAAAAT
64 CTACCTCGGGAAGATAAGATTCACC-CTTTCGATCTACCCCACTGCTAACTCGAGGAGACAAAAT
** *
26162278 CTG-AATCATCAGTGTGCTCC-CTTGCTACCTCAGGAAGATAAGACTACA
128 CTGCAATCATCAGCCTGCTCCAC-TG-TACCTCAGGAAGACAAGACTACA
* *
26162326 ATCTTCAGCCTGCTCCCTTGCTACCCTACGGAGATAAGGCTAGTGCCTAAAATCTACTCGCCTGC
1 ATCTTCAGCCTGCTCCCTTGCTACCCTAAGGAGATAAGGCTAGTGGCTAAAATCTACTC-CCTGC
* * * * * * ** ** *
26162391 TACCTCGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCATTGCTACCTCTTGGAGATGAGATC
65 TACCTCGGGAAGATAAGATTCACCCT-TTCGATCTACCCCACTGCTAACTCGAGGAGACAAAATC
* ** * * *
26162456 TGCAATCTTCAGCCTGCTCCACTGTTGCTCAGGGAGACAAGGCTACT
129 TGCAATCATCAGCCTGCTCCACTGTACCTCAGGAAGACAAGACTACA
** * * *
26162503 GGCTTTAGCCTGCTCCCTTACTA-CCTCAGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTG
1 ATCTTCAGCCTGCTCCCTTGCTACCCT-AAGGAGATAAGGCTAGTGGCTAAAATCTACT-CCCTG
26162567 CTACCTCGGGAAGATAAGATTCACCACTTTCGA
64 CTACCTCGGGAAGATAAGATTCACC-CTTTCGA
26162600 CCTGCTACAC
Statistics
Matches: 232, Mismatches: 34, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
176 5 0.02
177 206 0.89
178 20 0.09
179 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (175 bp):
ATCTTCAGCCTGCTCCCTTGCTACCCTAAGGAGATAAGGCTAGTGGCTAAAATCTACTCCCTGCT
ACCTCGGGAAGATAAGATTCACCCTTTCGATCTACCCCACTGCTAACTCGAGGAGACAAAATCTG
CAATCATCAGCCTGCTCCACTGTACCTCAGGAAGACAAGACTACA
Found at i:26162563 original size:44 final size:44
Alignment explanation
Indices: 26162483--26162584 Score: 107
Period size: 44 Copynumber: 2.3 Consensus size: 44
26162473 TCCACTGTTG
* ** * * *
26162483 CTCAGGGAGACAAGGCTACTGGCTTTAGCCTGCTCCCTTACTAC
1 CTCAGGGAGATAAGGCTACTGGCTAAAACCTACTCCCCTACTAC
* * *
26162527 CTCAGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTGCTAC
1 CTCAGGGAGATAAGGCTACTGGCTAAAACCTACTCCCCTACTAC
26162571 CTC-GGGAAGATAAG
1 CTCAGGG-AGATAAG
26162585 ATTCACCACT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
43 3 0.06
44 45 0.94
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (44 bp):
CTCAGGGAGATAAGGCTACTGGCTAAAACCTACTCCCCTACTAC
Found at i:26162707 original size:176 final size:175
Alignment explanation
Indices: 26162334--26162716 Score: 513
Period size: 177 Copynumber: 2.2 Consensus size: 175
26162324 CAATCTTCAG
* *
26162334 CCTGCTCCCTTGCTACC-CTACGGAGATAAGGCTAGTGCCTAAAATCTACTCGCCTGCTACCTCG
1 CCTGCTCCCTTGCTACCTC-AGGGAGATAAGGCTAGTGCCTAAAATCTACTCCCCTGCTACCTCG
* * * * *
26162398 GGAAGATAAGATTCGCCATCTTCGATCTGCTCCATTGCTACCTCTTGGAGATGAGATCTGCAATC
65 GGAAGATAAGATTCACCATCTTCGACCTGCTACA-T-CTACCTCTTGGAGATAAGATCTACAATC
* * * *
26162463 TTCAGCCTGCTCCACTGTTGCTCAGGGAGACAAGGCTACTGGCTTTAG
128 TTCAGCCTGCTCCACTGCTACTCAGGGAGACAAGGCTACTGGCTTAAA
* *
26162511 CCTGCTCCCTTACTACCTCAGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTCGG
1 CCTGCTCCCTTGCTACCTCAGGGAGATAAGGCTAGTGCCTAAAATCTACTCCCCTGCTACCTCGG
26162576 GAAGATAAGATTCACCA-CTTTCGACCTGCTACA-CTA-CTGCTTAGGGAGATAAGATCTACAAT
66 GAAGATAAGATTCACCATC-TTCGACCTGCTACATCTACCT-CTT--GGAGATAAGATCTACAAT
* *
26162638 CTTCAGCCTGCTCCACTGCTACTCAGGGAGTCAAGGCTAGTGGCTTAAA
127 CTTCAGCCTGCTCCACTGCTACTCAGGGAGACAAGGCTACTGGCTTAAA
* * *
26162687 TCTGCTCCGTTGCTACCTCAGGCAGATAAG
1 CCTGCTCCCTTGCTACCTCAGGGAGATAAG
26162717 ATTTGCCGTC
Statistics
Matches: 182, Mismatches: 19, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
173 2 0.01
174 6 0.03
176 86 0.47
177 87 0.48
178 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (175 bp):
CCTGCTCCCTTGCTACCTCAGGGAGATAAGGCTAGTGCCTAAAATCTACTCCCCTGCTACCTCGG
GAAGATAAGATTCACCATCTTCGACCTGCTACATCTACCTCTTGGAGATAAGATCTACAATCTTC
AGCCTGCTCCACTGCTACTCAGGGAGACAAGGCTACTGGCTTAAA
Found at i:26162800 original size:133 final size:133
Alignment explanation
Indices: 26162511--26162879 Score: 435
Period size: 133 Copynumber: 2.8 Consensus size: 133
26162501 CTGGCTTTAG
* * * * *
26162511 CCTGCTCC-CTTACTACCTCAGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTCG
1 CCTGCTCCAC-TACTA-CTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTCA
* * * * * * *
26162575 GGAAGATAAGATTCACCACTTTCGACCTGCTACACTACTGCT---T-AGGGAGATAAGATCTACA
64 GGCAGATAAGATTCGCCATTTTAGA--T-CTACCCTACTGCTACCTCATGGATATAAGATCTACA
*
26162636 ATCTTCAG
126 ATCTTCAA
* * *
26162644 CCTGCTCCACTGCTACTCAGGGAGTCAAGGCTAGTGGCTTAAATCTGCTCCGTTGCTACCTCAGG
1 CCTGCTCCACTACTACTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTCAGG
* * * * *
26162709 CAGATAAGATTTGCCGTCTTT-GATCTACTCTAGTGCTACCTCATGGATATAAGATCTGCAATCT
66 CAGATAAGATTCGCCAT-TTTAGATCTACCCTACTGCTACCTCATGGATATAAGATCTACAATCT
26162773 TCAA
130 TCAA
*
26162777 CCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTCAGG
1 CCTGCTCCACTACTACTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTCAGG
*
26162842 GAGATAAGATTCGCCATTTTAGATCTACCCTACTGCTA
66 CAGATAAGATTCGCCATTTTAGATCTACCCTACTGCTA
26162880 TCTCGAGGTG
Statistics
Matches: 201, Mismatches: 28, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
129 11 0.05
130 1 0.00
132 61 0.30
133 127 0.63
134 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (133 bp):
CCTGCTCCACTACTACTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTCAGG
CAGATAAGATTCGCCATTTTAGATCTACCCTACTGCTACCTCATGGATATAAGATCTACAATCTT
CAA
Found at i:26162929 original size:133 final size:131
Alignment explanation
Indices: 26162509--26162930 Score: 387
Period size: 133 Copynumber: 3.2 Consensus size: 131
26162499 TACTGGCTTT
* * * *
26162509 AGCCTGCTCCCTTACTACCTCAGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTC
1 AGCCTGCT-CCTTACTACCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTC
* * * *
26162574 -GGGAAGATAAGATTCACCACTTTCGACCTGCTACACTACTGC--T-TAG-GGAGATAAGATCTA
65 AGGG-AGATAAGATTCGCCA-TTTTGA--T-CTACACTACTGCTATCTCGAGGTGATAAGATCTA
26162634 CAATCTTC
125 -AATCTTC
* * * *
26162642 AGCCTGCTCCACTGCTA-CTCAGGGAGTCAAGGCTAGTGGCTTAAATCTGCTCCGTTGCTACCTC
1 AGCCTGCTCC-TTACTACCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTC
* * * * * * *
26162706 AGGCAGATAAGATTTGCCGTCTTTGATCTACTCTAGTGCTACCTC-ATGGAT-ATAAGATCTGCA
65 AGGGAGATAAGATTCGCCAT-TTTGATCTACACTACTGCTATCTCGA-GG-TGATAAGATCT-AA
26162769 ATCTTC
126 ATCTTC
*
26162775 AACCTGCTCC--ACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCT
1 AGCCTGCTCCTTACTAC--CTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCT
* * *
26162838 CAGGGAGATAAGATTCGCCATTTTAGATCTACCCTACTGCTATCTCGAGGTGAAAAAATCTAAAT
64 CAGGGAGATAAGATTCGCCATTTT-GATCTACACTACTGCTATCTCGAGGTGATAAGATCTAAAT
*
26162903 CATC
128 CTTC
** *
26162907 AGTGTGCTTCCTTGCTACCTCAGG
1 AGCCTGC-TCCTTACTACCTCAGG
26162931 AAGATAAGAC
Statistics
Matches: 233, Mismatches: 37, Indels: 38
0.76 0.12 0.12
Matches are distributed among these distances:
129 10 0.04
130 4 0.02
131 1 0.00
132 74 0.32
133 139 0.60
134 1 0.00
135 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (131 bp):
AGCCTGCTCCTTACTACCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTCA
GGGAGATAAGATTCGCCATTTTGATCTACACTACTGCTATCTCGAGGTGATAAGATCTAAATCTT
C
Found at i:26163129 original size:43 final size:44
Alignment explanation
Indices: 26163081--26163169 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
26163071 GATCTGCAAT
*
26163081 CTTCAGCCTACTCTCC-TGCT-GCTCAGGGAGACAAGGCTAGTGG
1 CTTCAGCCTACTC-CCTTACTAGCTCAGGGAGACAAGGCTAGTGG
* * * *
26163124 CTTCAGCCTGCTCCCTTACTATCTCAGGGAGATATGGCTAGTGG
1 CTTCAGCCTACTCCCTTACTAGCTCAGGGAGACAAGGCTAGTGG
26163168 CT
1 CT
26163170 AAAATCTGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 2 0.05
43 15 0.38
44 22 0.56
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.27
Consensus pattern (44 bp):
CTTCAGCCTACTCCCTTACTAGCTCAGGGAGACAAGGCTAGTGG
Found at i:26163241 original size:132 final size:132
Alignment explanation
Indices: 26163099--26163341 Score: 292
Period size: 132 Copynumber: 1.8 Consensus size: 132
26163089 TACTCTCCTG
*** * * * *
26163099 CTGCTCAGGGAGACAAG-GCTAGTGGCTTCAGCCTGCTCC-CTTACTATCTCAGGGAGATATGGC
1 CTGCTCAGGGAGACAAGAGCTACAAGCTTCAGCCAGCTCCAC-TACT-GCTCAGGGAGACAAGGC
* * *
26163162 TAGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAGGATAATATTCGCTGCTTTCGATCTACTTC
64 TAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCGCTGCTTTCGATCTACTTC
26163227 ACTA
129 ACTA
* * * * *
26163231 CTGCTTAGGGAGATAAGATCTACAATCTTCAGCCAGCTCCACTGCTGCTCAGGGAGACAAGGCTA
1 CTGCTCAGGGAGACAAGAGCTACAAGCTTCAGCCAGCTCCACTACTGCTCAGGGAGACAAGGCTA
* * *
26163296 GTGGCTTAAATCTTCTCCCTTGCTACCTCAGGAAGATAAGATTCGC
66 GTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCGC
26163342 CATCTTCGAT
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
132 71 0.78
133 19 0.21
134 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (132 bp):
CTGCTCAGGGAGACAAGAGCTACAAGCTTCAGCCAGCTCCACTACTGCTCAGGGAGACAAGGCTA
GTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGATTCGCTGCTTTCGATCTACTTCAC
TA
Found at i:26163295 original size:176 final size:176
Alignment explanation
Indices: 26162972--26163335 Score: 457
Period size: 176 Copynumber: 2.1 Consensus size: 176
26162962 TTGCAACCCT
* * * *
26162972 AGGGAGATAAGGCTAGTGGCTAAAATCTGCTTCCTTGCTACCTCAGGAAGATAAGGTTTTCCGTT
1 AGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAA-GTATTCCGCT
* * * * * *
26163037 TTTGATCTGCTCCATTGCTACCTTATGGAGATAAGATCTGCAATCTTCAGCCTACTCTCCTGCTG
65 TTCGATCTACTCCACTACTACCTTAGGGAGATAAGATCTACAATCTTCAGCCTACTCTCCTGCTG
26163102 CTCAGGGAGACAAGGCTAGTGGCTTCAGCCTGCTCCCTTACTATCTC
130 CTCAGGGAGACAAGGCTAGTGGCTTCAGCCTGCTCCCTTACTATCTC
* * *
26163149 AGGGAGATATGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAGGATAA-TATTCGCTGC
1 AGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGTATTC-C-GC
* *
26163213 TTTCGATCTACTTCACTACT-GCTTAGGGAGATAAGATCTACAATCTTCAGCC-AGCTC-CACTG
64 TTTCGATCTACTCCACTACTACCTTAGGGAGATAAGATCTACAATCTTCAGCCTA-CTCTC-CTG
* ** * * *
26163275 CTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTTCTCCCTTGCTACCTC
127 CTGCTCAGGGAGACAAGGCTAGTGGCTTCAGCCTGCTCCCTTACTATCTC
*
26163325 AGGAAGATAAG
1 AGGGAGATAAG
26163336 ATTCGCCATC
Statistics
Matches: 160, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
175 6 0.04
176 89 0.56
177 65 0.41
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.29
Consensus pattern (176 bp):
AGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGTATTCCGCTT
TCGATCTACTCCACTACTACCTTAGGGAGATAAGATCTACAATCTTCAGCCTACTCTCCTGCTGC
TCAGGGAGACAAGGCTAGTGGCTTCAGCCTGCTCCCTTACTATCTC
Found at i:26163370 original size:619 final size:620
Alignment explanation
Indices: 26162149--26163385 Score: 1836
Period size: 619 Copynumber: 2.0 Consensus size: 620
26162139 GAGATTCGCT
* * * *
26162149 ATCTTCAGCCTGCTCCACTGCTACCCTAAGGAGATAAAGCTGGTGGCTTAAATCTGCTCCCTTGC
1 ATCTTCAACCTGCTCCACTACTACCCTAAGGAGACAAAGCTAGTGGCTTAAATCTGCTCCCTTGC
* * *
26162214 TACCTCGGGAAGATAAGATTCACCGCTTTCGATCTACCCCACTGCTAACTCGAGGAGACAAAATC
66 TACCTCGGGAAGATAAGATTCACCACTTTAGATCTACCCCACTGCTAACTCGAGGAGAAAAAATC
* *
26162279 TGAATCATCAGTGTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAGCCTGCTCCCT
131 TAAATCATCAGTGTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAGACTGCTCCCT
* *
26162344 TGCTACCCTACGGAGATAAGGCTAGTGCCTAAAATCTACTCGCCTGCTACCTCGGGAAGATAAGA
196 TGCAACCCTACGGAGATAAGGCTAGTGCCTAAAATCTACTCGCCTGCTACCTCAGGAAGATAAGA
* *
26162409 TTCGCCATCTTCGATCTGCTCCATTGCTACCTCTTGGAGATGAGATCTGCAATCTTCAGCCTGCT
261 TTCGCCATCTTCGATCTGCTCCATTGCTACCTCTTGGAGATAAGATCTGCAATCTTCAGCCTACT
* *
26162474 CCACTGTTGCTCAGGGAGACAAGGCTACTGGCTTTAGCCTGCTCCCTTACTACCTCAGGGAGATA
326 CCACTGCTGCTCAGGGAGACAAGGCTACTGGCTTCAGCCTGCTCCCTTACTACCTCAGGGAGATA
*
26162539 AGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTCGGGAAGATAAGATTCACCACTTTCGACCTG
391 AGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTCGGGAAGATAAGATTCACCACTTTCGACCTA
* *
26162604 CTACACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCTACTCAGGGAGT
456 CTACACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCAGCTCCACTGCTACTCAGGGAGA
* * * * *
26162669 CAAGGCTAGTGGCTTAAATCTGCTCCGTTGCTACCTCAGGCAGATAAGATTTGCCGTCTTTGATC
521 CAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTCAGGAAGATAAGATTCGCCATCTTCGATC
* *
26162734 TACTCTAGTGCTACCTCATGGATATAAGATCTGCA
586 TACTCCAGTGCTACCTCATGGAGATAAGATCTGCA
* * * *
26162769 ATCTTCAACCTGCTCCACTACTGCTC-AGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGC
1 ATCTTCAACCTGCTCCACTACTACCCTAAGGAGACAAAGCTAGTGGCTTAAATCTGCTCCCTTGC
* * * * *
26162833 TACCTCAGGG-AGATAAGATTCGCCATTTTAGATCTACCCTACTGCTATCTCGAGGTGAAAAAAT
66 TACCTC-GGGAAGATAAGATTCACCACTTTAGATCTACCCCACTGCTAACTCGAGGAGAAAAAAT
* *
26162897 CTAAATCATCAGTGTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATCTTTAGACTGCTCCC
130 CTAAATCATCAGTGTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAGACTGCTCCC
* * * *
26162962 TTGCAACCCTAGGGAGATAAGGCTAGTGGCTAAAATCTGCTTC-CTTGCTACCTCAGGAAGATAA
195 TTGCAACCCTACGGAGATAAGGCTAGTGCCTAAAATCTAC-TCGCCTGCTACCTCAGGAAGATAA
* ** * * *
26163026 GGTTTTCCGTTTTTGATCTGCTCCATTGCTACCT-TATGGAGATAAGATCTGCAATCTTCAGCCT
259 GATTCGCCATCTTCGATCTGCTCCATTGCTACCTCT-TGGAGATAAGATCTGCAATCTTCAGCCT
* *
26163090 ACTCTC-CTGCTGCTCAGGGAGACAAGGCTAGTGGCTTCAGCCTGCTCCCTTACTATCTCAGGGA
323 ACTC-CACTGCTGCTCAGGGAGACAAGGCTACTGGCTTCAGCCTGCTCCCTTACTACCTCAGGGA
* * * * * **
26163154 GATATGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAGGATAATATTCGCTGCTTTCGA
387 GATAAGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTCGGGAAGATAAGATTCACCACTTTCGA
* * *
26163219 TCTACTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCAGCTCCACTGCTGCTCAGG
452 CCTACTACACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCAGCTCCACTGCTACTCAGG
*
26163284 GAGACAAGGCTAGTGGCTTAAATCTTCTCCCTTGCTACCTCAGGAAGATAAGATTCGCCATCTTC
517 GAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTCAGGAAGATAAGATTCGCCATCTTC
* * * *
26163349 GATTTGCTCCATTGCTACCTCATGGAGATAGGATCTG
582 GATCTACTCCAGTGCTACCTCATGGAGATAAGATCTG
26163386 TGAATTCACC
Statistics
Matches: 550, Mismatches: 63, Indels: 9
0.88 0.10 0.01
Matches are distributed among these distances:
618 1 0.00
619 521 0.95
620 28 0.05
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (620 bp):
ATCTTCAACCTGCTCCACTACTACCCTAAGGAGACAAAGCTAGTGGCTTAAATCTGCTCCCTTGC
TACCTCGGGAAGATAAGATTCACCACTTTAGATCTACCCCACTGCTAACTCGAGGAGAAAAAATC
TAAATCATCAGTGTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAGACTGCTCCCT
TGCAACCCTACGGAGATAAGGCTAGTGCCTAAAATCTACTCGCCTGCTACCTCAGGAAGATAAGA
TTCGCCATCTTCGATCTGCTCCATTGCTACCTCTTGGAGATAAGATCTGCAATCTTCAGCCTACT
CCACTGCTGCTCAGGGAGACAAGGCTACTGGCTTCAGCCTGCTCCCTTACTACCTCAGGGAGATA
AGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTCGGGAAGATAAGATTCACCACTTTCGACCTA
CTACACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCAGCTCCACTGCTACTCAGGGAGA
CAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTCAGGAAGATAAGATTCGCCATCTTCGATC
TACTCCAGTGCTACCTCATGGAGATAAGATCTGCA
Found at i:26170008 original size:19 final size:18
Alignment explanation
Indices: 26169984--26170037 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
26169974 TGAAATAAGC
26169984 AAATAAATAAGTAAATAAA
1 AAATAAATAA-TAAATAAA
26170003 AAATAAA-AATATAATAAA
1 AAATAAATAATA-AATAAA
26170021 ATAAT-AATAATAAATAA
1 A-AATAAATAATAAATAA
26170038 TAGGAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 2 0.06
18 16 0.50
19 14 0.44
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (18 bp):
AAATAAATAATAAATAAA
Found at i:26170026 original size:3 final size:3
Alignment explanation
Indices: 26170004--26170188 Score: 118
Period size: 3 Copynumber: 62.7 Consensus size: 3
26169994 GTAAATAAAA
* ** *
26170004 AAT AAA AAT -AT AAT AA- AAT AAT AAT AAT AAAT AAT AGG AA- AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
** * * *
26170047 AAT AAT TGT AAT AAT AAT GAT AAT AAAT AAT AGT AGT AAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT -AAT AAT AAT
* *
26170094 AAT AGA- AAT AAT AAT GAT AA- AA- AAT AA- AAT AAT AAT AAT AGT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * **
26170136 AAT AAT AAT AGT AAT GAT AAT AA- ATAT AAGT AAT GGT AA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA-T AAT AAT AAT AAT AAT
26170181 AAT AAT AA
1 AAT AAT AA
26170189 CTAAACTAAT
Statistics
Matches: 142, Mismatches: 26, Indels: 28
0.72 0.13 0.14
Matches are distributed among these distances:
2 16 0.11
3 113 0.80
4 13 0.09
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:26170064 original size:12 final size:14
Alignment explanation
Indices: 26170013--26170090 Score: 51
Period size: 13 Copynumber: 5.9 Consensus size: 14
26170003 AAATAAAAAT
*
26170013 ATAATAAAATAA-TA
1 ATAAT-AAATAATTG
*
26170027 ATAATAAATAATAGG
1 ATAATAAATAAT-TG
*
26170042 A-AAAAAATAATTG
1 ATAATAAATAATTG
26170055 -TAAT-AATAA-TG
1 ATAATAAATAATTG
*
26170066 ATAATAAATAATAG
1 ATAATAAATAATTG
*
26170080 -TAGTAAATAAT
1 ATAATAAATAAT
26170091 AATAATAGAA
Statistics
Matches: 51, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
11 2 0.04
12 9 0.18
13 24 0.47
14 15 0.29
15 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (14 bp):
ATAATAAATAATTG
Found at i:26172668 original size:42 final size:42
Alignment explanation
Indices: 26172609--26172696 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
26172599 ATACTCCGTA
26172609 ACCCTCTTTCGGATTGAATACAGGTGAGGGGTGTTACATGGC
1 ACCCTCTTTCGGATTGAATACAGGTGAGGGGTGTTACATGGC
26172651 ACCCTCTTTCGGATTGAATACAGGTGAGGGGTGTTACATGGC
1 ACCCTCTTTCGGATTGAATACAGGTGAGGGGTGTTACATGGC
26172693 ACCC
1 ACCC
26172697 AATTGATTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (42 bp):
ACCCTCTTTCGGATTGAATACAGGTGAGGGGTGTTACATGGC
Found at i:26174833 original size:14 final size:15
Alignment explanation
Indices: 26174816--26174871 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
26174806 TTTTAGATAT
26174816 GATATG-CAATCTTA
1 GATATGACAATCTTA
26174830 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
26174847 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
26174865 GATATGA
1 GATATGA
26174872 TATGCAAGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:26174844 original size:17 final size:17
Alignment explanation
Indices: 26174803--26174873 Score: 97
Period size: 17 Copynumber: 4.0 Consensus size: 17
26174793 CAATGATATG
*
26174803 CAATTTTAGATATGATA
1 CAATCTTAGATATGATA
26174820 TGCAATCTTAGATATGATA
1 --CAATCTTAGATATGATA
*
26174839 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
26174857 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
26174874 TGCAAGCTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
17 16 0.33
18 16 0.33
19 16 0.33
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:26174865 original size:35 final size:36
Alignment explanation
Indices: 26174803--26174873 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
26174793 CAATGATATG
*
26174803 CAATTTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
26174839 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
26174874 TGCAAGCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 19 0.56
36 15 0.44
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATA
Found at i:26174892 original size:17 final size:19
Alignment explanation
Indices: 26174795--26174885 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
26174785 ATAATCTTCA
*
26174795 ATGATATGCAATTTTAGAT
1 ATGATATGCAATCTTAGAT
26174814 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26174833 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26174850 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
26174868 ATGATATGCAAGCTTAGA
1 ATGATATGCAATCTTAGA
26174886 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:26175198 original size:17 final size:17
Alignment explanation
Indices: 26175176--26175208 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26175166 TTTCCCTGAT
26175176 TTTTTTA-TATATTTTAA
1 TTTTTTAGTA-ATTTTAA
26175193 TTTTTTAGTAATTTTA
1 TTTTTTAGTAATTTTA
26175209 GTATCATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTTTTAGTAATTTTAA
Found at i:26179362 original size:46 final size:46
Alignment explanation
Indices: 26179310--26179668 Score: 522
Period size: 46 Copynumber: 7.8 Consensus size: 46
26179300 AGTGTGCTCT
* * *
26179310 CTGATATGGAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
26179356 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
26179402 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
26179448 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
26179494 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATTGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
26179540 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
26179586 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
26179633 ATGACA-GAAATGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATAC
26179669 TATGACATCA
Statistics
Matches: 292, Mismatches: 20, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
45 26 0.09
46 224 0.77
47 42 0.14
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:26183356 original size:46 final size:46
Alignment explanation
Indices: 26183303--26183624 Score: 482
Period size: 46 Copynumber: 7.0 Consensus size: 46
26183293 AGTGTGCTTT
*
26183303 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
26183349 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26183395 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
26183441 CTGATATGAAATGTGTAAGACCATGGTTGAAAGAAACCGTGGCAAA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *
26183487 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACTATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
26183533 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** **
26183579 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
26183625 TATGACAGAA
Statistics
Matches: 254, Mismatches: 21, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
46 218 0.86
47 36 0.14
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:26183655 original size:46 final size:46
Alignment explanation
Indices: 26183304--26183662 Score: 470
Period size: 46 Copynumber: 7.8 Consensus size: 46
26183294 GTGTGCTTTC
* * *
26183304 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACT
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
26183350 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
26183396 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
26183442 TGATATGAAATGTGTAAGACCATGGTTGAAAGAAACCGTGGCAA-A
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
26183487 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACTATGGCAACC
1 -TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
26183534 TGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*** * *
26183580 TGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * *
26183627 TGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
26183663 TATGACATCA
Statistics
Matches: 286, Mismatches: 24, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
46 245 0.86
47 41 0.14
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:26194431 original size:89 final size:87
Alignment explanation
Indices: 26194279--26194483 Score: 229
Period size: 89 Copynumber: 2.3 Consensus size: 87
26194269 TGACCTTCAT
* * *
26194279 TGAAGCAGATCCAAGATGATTTGGCATCTCTAT--ATTCGAC-GGAGAGCAGATCGAAGACATAG
1 TGAAGCAGATCTAAGATGATTTGGCATC-CT-TGCGTT-GACAAG-GAGCAGATCGAAGACATAG
* *
26194341 CAGATCTAACCTTC-GGATGTTTTCAC
62 CAGATCTAACCTTCACG-TGTTTACAC
*
26194367 ATCGAAGTAGATCTAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACATAGCA
1 -T-GAAGCAGATCTAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACATAGCA
* ** *
26194432 GATTTTGCTTTCACGTGTTTACAC
64 GATCTAACCTTCACGTGTTTACAC
26194456 TGAAGCAGATCTAAGATGATTTGGCATC
1 TGAAGCAGATCTAAGATGATTTGGCATC
26194484 TCTGTACTGT
Statistics
Matches: 100, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
87 26 0.26
88 2 0.02
89 43 0.43
90 29 0.29
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (87 bp):
TGAAGCAGATCTAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACATAGCAGA
TCTAACCTTCACGTGTTTACAC
Found at i:26194510 original size:87 final size:87
Alignment explanation
Indices: 26194279--26194516 Score: 241
Period size: 87 Copynumber: 2.7 Consensus size: 87
26194269 TGACCTTCAT
* * *
26194279 TGAAGCAGATCCAAGATGATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAG
1 TGAAGCAGATCTAAGATGATTTGGCATCTCT-TACT-GACAGAGAGCAGATCGAAGACATAGCAG
* *
26194344 ATCTAACCTTCGGATGTTTTCACA
64 ATCTAACCTTCCGATGTTTACACA
* *
26194368 TCGAAGTAGATCTAAGATGATTTGGCATC-CTTGCGTTGACA-AGGAGCAGATCGAAGACATAGC
1 T-GAAGCAGATCTAAGATGATTTGGCATCTCTTAC--TGACAGA-GAGCAGATCGAAGACATAGC
* ** *
26194431 AGATTTTGCTTTCACG-TGTTTACAC-
62 AGATCTAACCTTC-CGATGTTTACACA
* * * *
26194456 TGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAATAG
1 TGAAGCAGATCTAAGATGATTTGGCATCTCT-TACTGACAGAGAGCAGATCGAAGACATAG
26194517 ATTTGGTATC
Statistics
Matches: 124, Mismatches: 17, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
87 46 0.37
88 6 0.05
89 45 0.36
90 27 0.22
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (87 bp):
TGAAGCAGATCTAAGATGATTTGGCATCTCTTACTGACAGAGAGCAGATCGAAGACATAGCAGAT
CTAACCTTCCGATGTTTACACA
Found at i:26194540 original size:298 final size:298
Alignment explanation
Indices: 26193998--26194632 Score: 1099
Period size: 298 Copynumber: 2.1 Consensus size: 298
26193988 CAAAGAAACA
* *
26193998 GATTTAGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
1 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
* *
26194063 TTTCACATCGAAGTAGATCTAAGATGATTTGGTATCCTTGCGTTGACAAGGAGCGGATCGAAGAC
66 TTTCACATCGAAGTAGATCTAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGAC
***
26194128 ATAGAAGATTTGGCTTTCACGTGTTTATGGTAAAGCAGATCTAAGATGATTTGGCATCTCTGTAC
131 ATAGAAGATTTGGCTTTCACGTGTTTACACTAAAGCAGATCTAAGATGATTTGGCATCTCTGTAC
26194193 TGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
196 TGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
* *
26194258 CATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGAT
261 CATAGCAGACCTGACCTCCATTGAAGCAGATCCAAGAT
26194296 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
1 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
26194361 TTTCACATCGAAGTAGATCTAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGAC
66 TTTCACATCGAAGTAGATCTAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGAC
* * *
26194426 ATAGCAGATTTTGCTTTCACGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATCTCTGTAC
131 ATAGAAGATTTGGCTTTCACGTGTTTACACTAAAGCAGATCTAAGATGATTTGGCATCTCTGTAC
* * *
26194491 TGTCAGAGAACAAATCGAAGAAATAGATTTGGTATCTCCATATTCGACGGAGAGCAGATCGAAGA
196 TGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
26194556 CATAGCAGACCTGACCTCCATTGAAGCAGATCCAAGAT
261 CATAGCAGACCTGACCTCCATTGAAGCAGATCCAAGAT
* * * *
26194594 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAG
1 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAG
26194633 GCACAACAGA
Statistics
Matches: 318, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
298 318 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (298 bp):
GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
TTTCACATCGAAGTAGATCTAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGAC
ATAGAAGATTTGGCTTTCACGTGTTTACACTAAAGCAGATCTAAGATGATTTGGCATCTCTGTAC
TGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
CATAGCAGACCTGACCTCCATTGAAGCAGATCCAAGAT
Found at i:26194728 original size:78 final size:78
Alignment explanation
Indices: 26194516--26194732 Score: 276
Period size: 78 Copynumber: 2.8 Consensus size: 78
26194506 CGAAGAAATA
* ** * * *
26194516 GATTTGGTATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGAC-CTGACCTCCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG-CTCTGACCTTCATTGA
26194580 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * * *
26194594 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGGCACAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGCTCT-GACCTTCATTGA
26194658 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
26194672 GATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGAAGACATAGTAGCTCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGCTCTGACCTTCAT
26194733 GTGTTTACAT
Statistics
Matches: 117, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
77 1 0.01
78 115 0.98
79 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGCTCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:26194866 original size:44 final size:45
Alignment explanation
Indices: 26194746--26194945 Score: 276
Period size: 45 Copynumber: 4.5 Consensus size: 45
26194736 TTTACATCGA
* * * * *
26194746 AGCAGATCCAAGATGATAGATTTGGCATCCCTGTATTGGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
26194791 AGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAGACGGGA
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
26194836 AGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
26194880 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
26194925 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAACAGAT
26194946 ATCACCTTCC
Statistics
Matches: 135, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
44 40 0.30
45 95 0.70
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.23
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:26194877 original size:89 final size:90
Alignment explanation
Indices: 26194744--26194945 Score: 291
Period size: 89 Copynumber: 2.3 Consensus size: 90
26194734 TGTTTACATC
* * * *
26194744 GAAGCAGATCCAAGAT-GATAGATTTGGCATCCCTGTATTGGACGGGGAGCAAATCGGAGATAAC
1 GAAGCAGATCAAAGATAG-CAGATTTGGCATCCCTGTATTAGACGGGGAGCAAATCGAAGATAAC
26194808 AGATTTGGCATCTCTGTATTAGACGG
65 AGATTTGGCATCTCTGTATTAGACGG
** * * *
26194834 GAAGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GAAGCAGATCAAAGATAGCAGATTTGGCATCCCTGTATTAGACGGGGAGCAAATCGAAGATAACA
26194898 GATTTGGCATCTCTGTATTAGACGG
66 GATTTGGCATCTCTGTATTAGACGG
*
26194923 GGAGCAGATCAAAGATAGCAGAT
1 GAAGCAGATCAAAGATAGCAGAT
26194946 ATCACCTTCC
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
89 78 0.79
90 21 0.21
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (90 bp):
GAAGCAGATCAAAGATAGCAGATTTGGCATCCCTGTATTAGACGGGGAGCAAATCGAAGATAACA
GATTTGGCATCTCTGTATTAGACGG
Found at i:26195365 original size:35 final size:36
Alignment explanation
Indices: 26195302--26195372 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
26195292 CAATGATATG
*
26195302 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATATTAGATATGATA
26195338 CAATCTTAGATATGAT-TGCAATATTAGATATGATA
1 CAATCTTAGATATGATATGCAATATTAGATATGATA
26195373 TGTAATCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.53
36 16 0.47
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATATTAGATATGATA
Found at i:26195390 original size:22 final size:23
Alignment explanation
Indices: 26195363--26195407 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
26195353 TTGCAATATT
26195363 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
* *
26195385 AGATATGATTTTGTAATTTTAGA
1 AGATATGATTATGTAATCTTAGA
26195408 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.02, G:0.18, T:0.42
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:26195391 original size:17 final size:19
Alignment explanation
Indices: 26195294--26195384 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
26195284 ATAATCTTCA
26195294 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26195313 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26195332 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
26195349 ATGAT-TGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
*
26195367 ATGATATGTAATCTTAGA
1 ATGATATGCAATCTTAGA
26195385 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.23
19 35 0.53
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:26195417 original size:22 final size:23
Alignment explanation
Indices: 26195373--26195417 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26195363 AGATATGATA
*
26195373 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
* *
26195396 TGTAATTTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
26195418 GTAGATACCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:26195698 original size:17 final size:17
Alignment explanation
Indices: 26195676--26195708 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26195666 TTTCCCTGAT
26195676 TTTTTTA-TATATTTTAA
1 TTTTTTAGTA-ATTTTAA
26195693 TTTTTTAGTAATTTTA
1 TTTTTTAGTAATTTTA
26195709 GTATCATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTTTTAGTAATTTTAA
Found at i:26199768 original size:38 final size:38
Alignment explanation
Indices: 26199717--26199794 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
26199707 TTTCAGTGAG
26199717 TTGTTTAATTTGCTTAAGGCTTACTAAGCTAAGTTAGC
1 TTGTTTAATTTGCTTAAGGCTTACTAAGCTAAGTTAGC
26199755 TTGTTTAATTTGCTTAAGGCTTACTAAGCTAAGTTAGC
1 TTGTTTAATTTGCTTAAGGCTTACTAAGCTAAGTTAGC
26199793 TT
1 TT
26199795 ACTCTGTGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.44
Consensus pattern (38 bp):
TTGTTTAATTTGCTTAAGGCTTACTAAGCTAAGTTAGC
Found at i:26207883 original size:20 final size:20
Alignment explanation
Indices: 26207858--26207911 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
26207848 ATATATATAC
26207858 TAAATAAAATAATAAAATAA
1 TAAATAAAATAATAAAATAA
*** * *
26207878 TAAATATCTTATTAAAATAT
1 TAAATAAAATAATAAAATAA
26207898 TAAAT-AAATAATAA
1 TAAATAAAATAATAA
26207912 TTATCTAATT
Statistics
Matches: 25, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAATAAAATAATAAAATAA
Found at i:26209080 original size:112 final size:113
Alignment explanation
Indices: 26208933--26209166 Score: 282
Period size: 113 Copynumber: 2.1 Consensus size: 113
26208923 GATTCACAAA
*
26208933 AAGCGCCGCAAAAAAATAAGGCCAACGACGTCG-TTT-ATTGAGTTTTTGGGCCATTAGCGGCGT
1 AAGCGCCGCAAAAAAATAAGGCCAACGACGCCGTTTTCATTG-GTTTTTGGGCCATTAGCGGCGT
*
26208996 TTT-TACAAAAGCGCC-CTAATGCTCCTG-TCTTTAGCGGCG-TTTTCTGAG
65 TTTCT-CAAAAGCGCCGCTAATGAT-CTGTTCTTTAGCGGCGTTTTTCTG-G
* * * * *
26209044 AAGCGCCGCAAAAAACCTAAGGGCAACGACGCCGTTTTCTTTGTTTTTTGGGCCTTTAGCGGCGT
1 AAGCGCCGCAAAAAA-ATAAGGCCAACGACGCCGTTTTCATTGGTTTTTGGGCCATTAGCGGCGT
* * * *
26209109 TTTCTTAAAAGCGCCGCTAATGATTTGTTTTTTAGCGGCGTTTTTCTGT
65 TTTCTCAAAAGCGCCGCTAATGATCTGTTCTTTAGCGGCGTTTTTCTGG
26209158 AAGCGCCGC
1 AAGCGCCGC
26209167 TAATAGTAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
111 15 0.14
112 15 0.14
113 37 0.35
114 31 0.30
115 7 0.07
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (113 bp):
AAGCGCCGCAAAAAAATAAGGCCAACGACGCCGTTTTCATTGGTTTTTGGGCCATTAGCGGCGTT
TTCTCAAAAGCGCCGCTAATGATCTGTTCTTTAGCGGCGTTTTTCTGG
Found at i:26209551 original size:18 final size:21
Alignment explanation
Indices: 26209505--26209553 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 21
26209495 TAGTTCGACT
26209505 AAATTAATATATAAATCAAAC
1 AAATTAATATATAAATCAAAC
* *
26209526 AAAGTAATATA-AAA-C-ACC
1 AAATTAATATATAAATCAAAC
26209544 AAATTAATAT
1 AAATTAATAT
26209554 CGTGATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 11 0.44
19 1 0.04
20 3 0.12
21 10 0.40
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (21 bp):
AAATTAATATATAAATCAAAC
Found at i:26209837 original size:15 final size:16
Alignment explanation
Indices: 26209819--26209849 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
26209809 GCTTTAAGAC
26209819 TTAGGGTT-TAGGGGT
1 TTAGGGTTATAGGGGT
26209834 TTAGGGTTATAGGGGT
1 TTAGGGTTATAGGGGT
26209850 CGTGTTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (16 bp):
TTAGGGTTATAGGGGT
Found at i:26210154 original size:7 final size:7
Alignment explanation
Indices: 26210141--26210225 Score: 80
Period size: 7 Copynumber: 12.1 Consensus size: 7
26210131 TCGGATGTAA
26210141 GGGTTTG
1 GGGTTTG
*
26210148 TGGTTTG
1 GGGTTTG
26210155 GGGTTTG
1 GGGTTTG
26210162 GGGTTTG
1 GGGTTTG
26210169 GGGTTTG
1 GGGTTTG
*
26210176 GGATTTG
1 GGGTTTG
* *
26210183 GGTTTTT
1 GGGTTTG
* *
26210190 GAGTTTA
1 GGGTTTG
* *
26210197 GAGTTTA
1 GGGTTTG
**
26210204 ATGTTTG
1 GGGTTTG
26210211 GGGTTTG
1 GGGTTTG
26210218 GGGTTTG
1 GGGTTTG
26210225 G
1 G
26210226 AAATTTAAGG
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 65 1.00
ACGTcount: A:0.07, C:0.00, G:0.46, T:0.47
Consensus pattern (7 bp):
GGGTTTG
Found at i:26211047 original size:230 final size:230
Alignment explanation
Indices: 26210643--26211151 Score: 761
Period size: 230 Copynumber: 2.2 Consensus size: 230
26210633 AAGAAAACGG
*
26210643 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTATACAAAACGCCGCAACTATGTTTTCTTTGTTA
1 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTA-ATAAAACGCCGCAACTATGTTTTCTTTGTTA
* * * ** *
26210708 CGGGAACGGCGTCGTTTTCCATTGTTATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
65 CAGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
*
26210773 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCATTTATATATA
130 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATA
* * **
26210838 AACGTCGCAAACTCGAAATGGTGTTACGAAAAATGA
195 AACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
*
26210874 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGATAAAACGCCGCAAGTATGTTTTCTTTGTTA
1 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTA-ATAAAACGCCGCAACTATGTTTTCTTTGTTA
*
26210939 CAGAAACGGCATCGTTTT-CAAGGATATTTGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
65 CAGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
* * *
26211003 AAAGATTACAGGAGTTTGCTTTAAACGACTGCGTTTGACCTTATATTTAGTGGCGCTTATATATA
130 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATA
*
26211068 AACGCCGCAAAATCGAAATGGTGTTACGGAAAACAA
195 AACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
* *** *
26211104 CGCCGTTTACTTAGTTGGTTTTAGTGGCGCTTTT-ATTAAACGCCGCAA
1 CGCCGTTTTCTTA-TTACATTTAGTGGCG-TTTTAATAAAACGCCGCAA
26211152 ATTTGCATTA
Statistics
Matches: 252, Mismatches: 24, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
230 159 0.63
231 89 0.35
232 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (230 bp):
CGCCGTTTTCTTATTACATTTAGTGGCGTTTTAATAAAACGCCGCAACTATGTTTTCTTTGTTAC
AGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTTA
AAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATAA
ACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
Found at i:26211503 original size:19 final size:19
Alignment explanation
Indices: 26211481--26211524 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
26211471 CAGACATCTC
*
26211481 CCCCAAATCCCTAAAATTT
1 CCCCAAATCCCTAAAAGTT
* *
26211500 CCCCTAATCCCTAACAGTT
1 CCCCAAATCCCTAAAAGTT
26211519 CCCCAA
1 CCCCAA
26211525 CGTAGTCCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.43, G:0.02, T:0.23
Consensus pattern (19 bp):
CCCCAAATCCCTAAAAGTT
Found at i:26213564 original size:20 final size:20
Alignment explanation
Indices: 26213539--26213600 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
26213529 TACAATTTCT
26213539 TAACTTATATAATATTAAGA
1 TAACTTATATAATATTAAGA
*
26213559 TAACTTATATAATATT-ACA
1 TAACTTATATAATATTAAGA
* *
26213578 TAACTTATATCATGTTAAGA
1 TAACTTATATAATATTAAGA
26213598 TAA
1 TAA
26213601 AAAATCGAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
19 16 0.43
20 21 0.57
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (20 bp):
TAACTTATATAATATTAAGA
Found at i:26213683 original size:19 final size:18
Alignment explanation
Indices: 26213659--26213749 Score: 64
Period size: 19 Copynumber: 5.1 Consensus size: 18
26213649 TTTAACTTAC
26213659 AACTTACACAATACATAAT
1 AACTTACA-AATACATAAT
*
26213678 AACTTACAACTTACATAAT
1 AACTTACAA-ATACATAAT
* * * *
26213697 -ACATA-ATA-AC-TTAC
1 AACTTACAAATACATAAT
26213711 AACTTACACAATACATAAT
1 AACTTACA-AATACATAAT
*
26213730 AACTTACAACTTACATAAT
1 AACTTACAA-ATACATAAT
26213749 A
1 A
26213750 CATAATAACT
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
14 2 0.04
15 6 0.11
16 1 0.02
17 2 0.04
18 8 0.15
19 35 0.65
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.29
Consensus pattern (18 bp):
AACTTACAAATACATAAT
Found at i:26213683 original size:26 final size:26
Alignment explanation
Indices: 26213639--26213924 Score: 463
Period size: 26 Copynumber: 11.2 Consensus size: 26
26213629 CATTTGACTG
*
26213639 ACATAATACAT-TTAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
*
26213664 ACACAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
26213690 ACATAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
*
26213716 ACACAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
26213742 ACATAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
* *
26213768 ACATAATACAT-TTAACTTGCAACTT
1 ACATAATACATAATAACTTACAACTT
*
26213793 ACACAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
26213819 ACATAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
*
26213845 ACATAATACAT-TTAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
* *
26213870 ACACAATACAT-TTAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
26213895 ACATAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
26213921 ACAT
1 ACAT
26213925 TTAACTTACA
Statistics
Matches: 243, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
25 79 0.33
26 164 0.67
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (26 bp):
ACATAATACATAATAACTTACAACTT
Found at i:26213770 original size:19 final size:19
Alignment explanation
Indices: 26213696--26213826 Score: 65
Period size: 19 Copynumber: 7.5 Consensus size: 19
26213686 ACTTACATAA
26213696 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
* * *
26213715 TACACAAT-ACATAATAACT
1 TACATAATAAC-TTACAACT
*
26213734 TAC-----AACTTACATA-A
1 TACATAATAACTTACA-ACT
26213748 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
*
26213767 TACATAAT-ACATT-TAACT
1 TACATAATAAC-TTACAACT
* * *
26213785 TGCA-ACTTAC--ACAA--
1 TACATAATAACTTACAACT
26213799 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
26213818 TACATAATA
1 TACATAATA
26213827 CATAATAACT
Statistics
Matches: 81, Mismatches: 14, Indels: 34
0.63 0.11 0.26
Matches are distributed among these distances:
14 9 0.11
15 7 0.09
16 2 0.02
17 6 0.07
18 14 0.17
19 43 0.53
ACGTcount: A:0.48, C:0.21, G:0.01, T:0.31
Consensus pattern (19 bp):
TACATAATAACTTACAACT
Found at i:26213800 original size:77 final size:76
Alignment explanation
Indices: 26213643--26213924 Score: 492
Period size: 77 Copynumber: 3.7 Consensus size: 76
26213633 TGACTGACAT
* * *
26213643 AATACATTTAACTTACAACTTACACAATACATAATAACTTACAACTTACATAATACATAATAACT
1 AATACATATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACAT-TTAACT
26213708 TACAACTTACAC
65 TACAACTTACAC
26213720 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1 AATACAT-ATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
*
26213785 TGCAACTTACAC
65 TACAACTTACAC
26213797 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1 AATACAT-ATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
26213862 TACAACTTACAC
65 TACAACTTACAC
*
26213874 AATACATTTAACTTACAACTTACATAATACATAATAACTTACAACTTACAT
1 AATACATATAACTTACAACTTACATAATACATAATAACTTACAACTTACAT
26213925 TTAACTTACA
Statistics
Matches: 198, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
76 43 0.22
77 106 0.54
78 49 0.25
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (76 bp):
AATACATATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACTT
ACAACTTACAC
Found at i:26213932 original size:11 final size:10
Alignment explanation
Indices: 26213916--26213969 Score: 55
Period size: 9 Copynumber: 5.7 Consensus size: 10
26213906 AATAACTTAC
26213916 AACTTACATTT
1 AACTTACA-TT
26213927 AACTTACA-T
1 AACTTACATT
26213936 AA--TACATTT
1 AACTTACA-TT
26213945 AACTTACA-T
1 AACTTACATT
26213954 AACTTACA-T
1 AACTTACATT
26213963 AACTTAC
1 AACTTAC
26213970 CATTGCAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 4 0.10
9 23 0.59
11 12 0.31
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (10 bp):
AACTTACATT
Found at i:26213953 original size:18 final size:18
Alignment explanation
Indices: 26213890--26213955 Score: 89
Period size: 18 Copynumber: 3.6 Consensus size: 18
26213880 TTTAACTTAC
*
26213890 AACTTACATAATACATAAT
1 AACTTACATAATACAT-TT
*
26213909 AACTTACA-ACTTACATTT
1 AACTTACATA-ATACATTT
26213927 AACTTACATAATACATTT
1 AACTTACATAATACATTT
26213945 AACTTACATAA
1 AACTTACATAA
26213956 CTTACATAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
18 28 0.67
19 14 0.33
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:26213965 original size:18 final size:18
Alignment explanation
Indices: 26213805--26213969 Score: 69
Period size: 18 Copynumber: 9.5 Consensus size: 18
26213795 ACAATACATA
26213805 ATAACTTAC--AACTTAC
1 ATAACTTACATAACTTAC
*
26213821 ATAATACATA-ATAACTTAC
1 AT-A-ACTTACATAACTTAC
26213840 --AACTTACATAA--TAC
1 ATAACTTACATAACTTAC
26213854 ATTTAACTTAC--AACTTAC
1 A--TAACTTACATAACTTAC
*
26213872 ACAA--TACATTTAACTTAC
1 ATAACTTACA--TAACTTAC
*
26213890 --AACTTACATAATACATA-
1 ATAACTTACAT-A-ACTTAC
26213907 ATAACTTAC--AACTTAC
1 ATAACTTACATAACTTAC
26213923 ATTTAACTTACATAA--TAC
1 A--TAACTTACATAACTTAC
26213941 ATTTAACTTACATAACTTAC
1 A--TAACTTACATAACTTAC
26213961 ATAACTTAC
1 ATAACTTAC
26213970 CATTGCAATT
Statistics
Matches: 116, Mismatches: 5, Indels: 54
0.66 0.03 0.31
Matches are distributed among these distances:
14 6 0.05
15 8 0.07
16 16 0.14
17 2 0.02
18 64 0.55
19 14 0.12
20 6 0.05
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAACTTACATAACTTAC
Found at i:26219444 original size:21 final size:21
Alignment explanation
Indices: 26219418--26219488 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
26219408 CTACAACTTA
* *
26219418 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
26219439 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
26219460 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
26219481 AAGCAGAG
1 AAGCAGAG
26219489 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:26219731 original size:14 final size:14
Alignment explanation
Indices: 26219712--26219745 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
26219702 ATTGCTATTG
26219712 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
26219726 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
*
26219740 TTTGCT
1 GTTGCT
26219746 ACAGGAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (14 bp):
GTTGCTTTTGAAAT
Found at i:26219861 original size:40 final size:41
Alignment explanation
Indices: 26219811--26219973 Score: 166
Period size: 43 Copynumber: 3.9 Consensus size: 41
26219801 GTTTTTGTAT
* * *
26219811 AAAAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTG-T
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAA
* *
26219851 AAAAATGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAA
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG-TTTG-AA
* * ***
26219894 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCC
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG-TTTGAA
** * *
26219936 TTAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTT
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTT
26219974 TTTTCTAAGC
Statistics
Matches: 103, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 32 0.31
41 6 0.06
42 31 0.30
43 34 0.33
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (41 bp):
AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAA
Found at i:26220017 original size:42 final size:43
Alignment explanation
Indices: 26219899--26220017 Score: 179
Period size: 42 Copynumber: 2.8 Consensus size: 43
26219889 AGAAAAAAAA
26219899 CGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTCCCTTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCCCTTAAG
* **
26219941 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTC-TAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCCCTTAAG
* *
26219983 CGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
26220018 GTTTGTAAAC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
42 66 0.93
43 5 0.07
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.32
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCCCTTAAG
Found at i:26221279 original size:23 final size:24
Alignment explanation
Indices: 26221233--26221279 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26221223 ATACACGGAT
* *
26221233 TCCAACCCAAACACACCAGTAATA
1 TCCAACCAAAACACACCAGAAATA
26221257 TCCAACCAAAACACACCA-AAATA
1 TCCAACCAAAACACACCAGAAATA
26221280 ATCATGTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.51, C:0.36, G:0.02, T:0.11
Consensus pattern (24 bp):
TCCAACCAAAACACACCAGAAATA
Found at i:26221629 original size:26 final size:26
Alignment explanation
Indices: 26221591--26221640 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26221581 ACTATTTTCC
*
26221591 TATAAACATTTCACACAACCATTTTG
1 TATAAACAATTCACACAACCATTTTG
* * *
26221617 TATAACCAATTCATATAACCATTT
1 TATAAACAATTCACACAACCATTT
26221641 GTCATCTGGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.40, C:0.22, G:0.02, T:0.36
Consensus pattern (26 bp):
TATAAACAATTCACACAACCATTTTG
Found at i:26221756 original size:45 final size:44
Alignment explanation
Indices: 26221718--26222054 Score: 214
Period size: 45 Copynumber: 7.4 Consensus size: 44
26221708 CTTATTTATC
26221718 TTCGACATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATT
1 TTCGACATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCA-T
* * * * * * *
26221763 TTCTGTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTATTCAT
1 TTC-GACATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCAT
* * * * * * *
26221808 TTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
1 TTC--GACATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCAT
* * * * * *
26221854 TTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
1 TTC-GA-CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCAT
* * *
26221900 TT-GA-ATTGCGATGCCATAGCGTCTTTCAGCTATGGTCTTACTCGT
1 TTCGACA-T--GATGCCATAGTGTCTTTCAACTATGGTCTTACTCAT
* * * ** *
26221945 CT-GAATCATGATGCCATAGCGGCTTTCTGCTATGGTCTTACTC-G
1 TTCG-A-CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCAT
* * *
26221989 TCCGAATCATGATGCCATAGTGTCTTTTAGCTATGGTCTTACTCAT
1 TTCG-A-CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCAT
**
26222035 TTCTGGTATGATGCCATAGT
1 TTC-GACATGATGCCATAGT
26222055 CCAACTATGG
Statistics
Matches: 243, Mismatches: 37, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 1 0.00
45 119 0.49
46 118 0.49
47 2 0.01
48 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (44 bp):
TTCGACATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCAT
Found at i:26221789 original size:46 final size:46
Alignment explanation
Indices: 26221728--26221901 Score: 251
Period size: 46 Copynumber: 3.8 Consensus size: 46
26221718 TTCGACATGA
* * * *
26221728 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCAAGT
** *
26221774 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAAGT
* *
26221820 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAAGT
26221866 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
26221902 GAATTGCGAT
Statistics
Matches: 118, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 4 0.03
46 114 0.97
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAAGT
Found at i:26224390 original size:8 final size:8
Alignment explanation
Indices: 26224377--26224408 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
26224367 CTAGATCGGC
26224377 AAAAGCCG
1 AAAAGCCG
26224385 AAAAGCCG
1 AAAAGCCG
*
26224393 AAATGCCG
1 AAAAGCCG
26224401 AAAAGCCG
1 AAAAGCCG
26224409 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:26224856 original size:27 final size:27
Alignment explanation
Indices: 26224797--26224886 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
26224787 AGGAAGCGTC
*
26224797 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
26224825 TTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
26224852 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
26224881 CTGGTG
1 CTGGTG
26224887 ACTCTATCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 21 0.40
28 24 0.46
29 7 0.13
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:26224897 original size:29 final size:28
Alignment explanation
Indices: 26224843--26224897 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 28
26224833 CCTGCCACAT
* *
26224843 ATATCTGTTCTGGTGGCACTGCCACAAA
1 ATATCTGTTCTGGTGACACTACCACAAA
* *
26224871 ATATCTGTATCTGGTGACTCTATCACA
1 ATATCTGT-TCTGGTGACACTACCACA
26224898 TTTTCTGTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 8 0.36
29 14 0.64
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (28 bp):
ATATCTGTTCTGGTGACACTACCACAAA
Found at i:26226003 original size:11 final size:10
Alignment explanation
Indices: 26225975--26226008 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
26225965 AGCCTGTAAG
26225975 TATTCTGAAT
1 TATTCTGAAT
*
26225985 TTTTCTGAAT
1 TATTCTGAAT
26225995 ATATTCTGAAT
1 -TATTCTGAAT
26226006 TAT
1 TAT
26226009 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:26232522 original size:27 final size:27
Alignment explanation
Indices: 26232464--26232553 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
26232454 AGGAAGCGTC
26232464 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
26232492 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
26232519 CTGGTGGCACTACCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
26232548 CTGGTG
1 CTGGTG
26232554 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:26235273 original size:20 final size:20
Alignment explanation
Indices: 26235248--26235301 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
26235238 ATATATATAC
26235248 TAAATAAAATAATAAAATAA
1 TAAATAAAATAATAAAATAA
*** * *
26235268 TAAATATCTTATTAAAATAT
1 TAAATAAAATAATAAAATAA
26235288 TAAAT-AAATAATAA
1 TAAATAAAATAATAA
26235302 TTATCTAATT
Statistics
Matches: 25, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAATAAAATAATAAAATAA
Found at i:26235595 original size:30 final size:31
Alignment explanation
Indices: 26235527--26235585 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
26235517 TACCCTTAAA
* * *
26235527 ATATTTGCACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
26235558 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
26235586 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.29, C:0.20, G:0.03, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:26235843 original size:26 final size:25
Alignment explanation
Indices: 26235782--26235849 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
26235772 CATGCTCGAA
* *
26235782 TTTT-TGATTTTGGTGAATATTTTG
1 TTTTATGATGTTGATGAATATTTTG
* *
26235806 TGTTATGTTGTTGATGAATATTTGTG
1 TTTTATGATGTTGATGAATATTT-TG
26235832 TTTTATGATGTTTGATGA
1 TTTTATGATG-TTGATGA
26235850 TGAAATATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
24 3 0.09
25 15 0.43
26 10 0.29
27 7 0.20
ACGTcount: A:0.19, C:0.00, G:0.24, T:0.57
Consensus pattern (25 bp):
TTTTATGATGTTGATGAATATTTTG
Found at i:26237733 original size:43 final size:43
Alignment explanation
Indices: 26237683--26237768 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
26237673 TATGTGATAC
* * *
26237683 CGATATGTGTTTACGA-GCAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATGTGGTTAC-ATGCAAGACCATGTCTAGGACAGTGGCAT
* *
26237726 CGATATGTGGTTACATGTAAGACCATGTCTAGGACATTGGCAT
1 CGATATGTGGTTACATGCAAGACCATGTCTAGGACAGTGGCAT
26237769 TGTACGATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
CGATATGTGGTTACATGCAAGACCATGTCTAGGACAGTGGCAT
Found at i:26238219 original size:12 final size:12
Alignment explanation
Indices: 26238198--26238226 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26238188 AGGTGATATT
26238198 TATA-ATGTATA
1 TATATATGTATA
26238209 TATATATGTATA
1 TATATATGTATA
26238221 TATATA
1 TATATA
26238227 ATATGAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (12 bp):
TATATATGTATA
Found at i:26244041 original size:33 final size:33
Alignment explanation
Indices: 26244004--26244077 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 33
26243994 TTTATGTTTT
*
26244004 ATAAGTGTTAGTCAAAAAAATTCAAATAAGTTA
1 ATAAGTATTAGTCAAAAAAATTCAAATAAGTTA
26244037 ATAAGTATTAGTCAAAAAAATTCAAATAAGTTA
1 ATAAGTATTAGTCAAAAAAATTCAAATAAGTTA
*
26244070 ATAGGTAT
1 ATAAGTAT
26244078 CTTTAAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.51, C:0.05, G:0.12, T:0.31
Consensus pattern (33 bp):
ATAAGTATTAGTCAAAAAAATTCAAATAAGTTA
Found at i:26269785 original size:13 final size:13
Alignment explanation
Indices: 26269759--26269793 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
26269749 CAACGAAGAC
*
26269759 CACGGCCGTGCGA
1 CACGGCCGTACGA
*
26269772 CACGGTCGTACGA
1 CACGGCCGTACGA
26269785 CACGGCCGT
1 CACGGCCGT
26269794 GTGAACCACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.17, C:0.37, G:0.34, T:0.11
Consensus pattern (13 bp):
CACGGCCGTACGA
Found at i:26271553 original size:16 final size:16
Alignment explanation
Indices: 26271532--26271563 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26271522 TGTGTAATGC
26271532 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
26271548 CCCAAAAATCCTGAAA
1 CCCAAAAATCCCGAAA
26271564 TCTCGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:26272174 original size:303 final size:303
Alignment explanation
Indices: 26271627--26272209 Score: 1112
Period size: 303 Copynumber: 1.9 Consensus size: 303
26271617 TGATGGTAGG
26271627 TCTTTCCTTAACATGCTTAGTTGATTCGGCTATTGCTATGTATAGATGATATAAATATGAAATTG
1 TCTTTCCTTAACATGCTTAGTTGATTCGGCTATTGCTATGTATAGATGATATAAATATGAAATTG
*
26271692 GTTGTTATGATAATATAAGCATTAAATTGTGAATTGGTATTAAATTTTGTATGGCTAAGTTCGAA
66 GTTGTTATGATAATATAAGCATTAAATTGTGAATTGGTATTAAATGTTGTATGGCTAAGTTCGAA
**
26271757 TATGGTAAGGGTTTAGGGAAATATGTTTTGTCTTGTGAATAGTTTACTAAATCGGTTTAATGTTG
131 TATGGTAAGGGTTTAACGAAATATGTTTTGTCTTGTGAATAGTTTACTAAATCGGTTTAATGTTG
26271822 GAGTGAAATAATTATGTTATGTATATGTGAATAGGTCAAGGATATTAATGTAATGAATTGGGTAA
196 GAGTGAAATAATTATGTTATGTATATGTGAATAGGTCAAGGATATTAATGTAATGAATTGGGTAA
26271887 GTAGAAACAAGTTAAATTAGATGAAATGATTATGGTTTATATA
261 GTAGAAACAAGTTAAATTAGATGAAATGATTATGGTTTATATA
26271930 TCTTTCCTTAACATGCTTAGTTGATTCGGCTATTGCTATGTATAGATGATATAAATATGAAATTG
1 TCTTTCCTTAACATGCTTAGTTGATTCGGCTATTGCTATGTATAGATGATATAAATATGAAATTG
26271995 GTTGTTATGATAATATAAGCATTAAATTGTGAATTGGTATTAAATGTTGTATGGCTAAGTTCGAA
66 GTTGTTATGATAATATAAGCATTAAATTGTGAATTGGTATTAAATGTTGTATGGCTAAGTTCGAA
* * *
26272060 TGTGGTAAGGGTTTAACGAAATATGTTTTGTCTTGTGAATGGTTTACTATATCGGTTTAATGTTG
131 TATGGTAAGGGTTTAACGAAATATGTTTTGTCTTGTGAATAGTTTACTAAATCGGTTTAATGTTG
26272125 GAGTGAAATAATTATGTTATGTATATGTGAATAGGTCAAGGATATTAATGTAATGAATTGGGTAA
196 GAGTGAAATAATTATGTTATGTATATGTGAATAGGTCAAGGATATTAATGTAATGAATTGGGTAA
26272190 GTAGAAACAAGTTAAATTAG
261 GTAGAAACAAGTTAAATTAG
26272210 CTTTTTAAAT
Statistics
Matches: 274, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
303 274 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (303 bp):
TCTTTCCTTAACATGCTTAGTTGATTCGGCTATTGCTATGTATAGATGATATAAATATGAAATTG
GTTGTTATGATAATATAAGCATTAAATTGTGAATTGGTATTAAATGTTGTATGGCTAAGTTCGAA
TATGGTAAGGGTTTAACGAAATATGTTTTGTCTTGTGAATAGTTTACTAAATCGGTTTAATGTTG
GAGTGAAATAATTATGTTATGTATATGTGAATAGGTCAAGGATATTAATGTAATGAATTGGGTAA
GTAGAAACAAGTTAAATTAGATGAAATGATTATGGTTTATATA
Found at i:26273939 original size:26 final size:25
Alignment explanation
Indices: 26273910--26273973 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 25
26273900 AAATTATACG
*
26273910 TAATTAATGAATAATAAAATAATATA
1 TAATTAATGAATAATAAAATAA-AAA
26273936 TAATT--T--ATAATAAAATAAAAA
1 TAATTAATGAATAATAAAATAAAAA
*
26273957 TAATGTAAGGAATAATA
1 TAAT-TAATGAATAATA
26273974 TATATAGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
21 6 0.19
22 13 0.42
24 1 0.03
26 11 0.35
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (25 bp):
TAATTAATGAATAATAAAATAAAAA
Found at i:26274064 original size:29 final size:29
Alignment explanation
Indices: 26274008--26274064 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
26273998 AATAAAATTT
* *
26274008 ATAAATAAAATATAGAATAATATAATATG
1 ATAAATAAAATATAGAATAAAAAAATATG
*
26274037 ATAAATAATATATA-AATAAAAAATATAT
1 ATAAATAAAATATAGAATAAAAAA-ATAT
26274065 ATATACTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.32
Consensus pattern (29 bp):
ATAAATAAAATATAGAATAAAAAAATATG
Found at i:26274140 original size:25 final size:24
Alignment explanation
Indices: 26274094--26274150 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
26274084 AACTAGCGTT
26274094 TATA-AAAATAAATAATACATATA
1 TATATAAAATAAATAATACATATA
* *
26274117 GTATTTAAAATAAATTAA-ATATATA
1 -TATATAAAATAAA-TAATACATATA
26274142 TATATAAAA
1 TATATAAAA
26274151 GGATTAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 11 0.39
25 14 0.50
26 3 0.11
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (24 bp):
TATATAAAATAAATAATACATATA
Found at i:26275661 original size:44 final size:44
Alignment explanation
Indices: 26275580--26275690 Score: 143
Period size: 44 Copynumber: 2.5 Consensus size: 44
26275570 CAGATTTGCT
* * *
26275580 ATCTTCGATCTGCTCC-CCGGCTAATACAGAGATGCCAAATCTGTC
1 ATCTTCGATCTGC-CCTCTGTC-AATACAGAGACGCCAAATCTGTC
* * *
26275625 ATCTTTGATCTGCCCTCTGTCAATACAGAGACGCCAAATTTTTC
1 ATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTGTC
26275669 ATCTTCGATCTGCCCTCTGTCA
1 ATCTTCGATCTGCCCTCTGTCA
26275691 TCTTCGATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
44 43 0.74
45 15 0.26
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.32
Consensus pattern (44 bp):
ATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTGTC
Found at i:26275693 original size:21 final size:21
Alignment explanation
Indices: 26275667--26275755 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
26275657 GCCAAATTTT
26275667 TCATCTTCGATCTGCCCTCTG
1 TCATCTTCGATCTGCCCTCTG
26275688 TCATCTTCGATCTGCCCTCTG
1 TCATCTTCGATCTGCCCTCTG
* * ** *
26275709 TCA-ATACAGAGATGCCAAATCTG
1 TCATCTTC-GATCTGCC--CTCTG
*
26275732 TCATCTTTGATCTGCCCTCTG
1 TCATCTTCGATCTGCCCTCTG
26275753 TCA
1 TCA
26275756 ATACAGAGAC
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
20 2 0.04
21 37 0.70
23 13 0.25
24 1 0.02
ACGTcount: A:0.18, C:0.33, G:0.15, T:0.35
Consensus pattern (21 bp):
TCATCTTCGATCTGCCCTCTG
Found at i:26275726 original size:65 final size:65
Alignment explanation
Indices: 26275619--26275755 Score: 229
Period size: 65 Copynumber: 2.1 Consensus size: 65
26275609 AGATGCCAAA
* * *
26275619 TCTGTCATCTTTGATCTGCCCTCTGTCAATACAGAGACGCCAAATTTTTCATCTTCGATCTGCCC
1 TCTGTCATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCCC
* *
26275684 TCTGTCATCTTCGATCTGCCCTCTGTCAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCCC
1 TCTGTCATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCCC
26275749 TCTGTCA
1 TCTGTCA
26275756 ATACAGAGAC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.20, C:0.31, G:0.15, T:0.35
Consensus pattern (65 bp):
TCTGTCATCTTCGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCCC
Found at i:26275732 original size:44 final size:44
Alignment explanation
Indices: 26275690--26275848 Score: 248
Period size: 44 Copynumber: 3.6 Consensus size: 44
26275680 GCCCTCTGTC
26275690 ATCTTCGATCTGCCCTCTGTCAATACAGAGATGCCAAATCTG-T
1 ATCTTCGATCTGCCCTCTGTCAATACAGAGATGCCAAATCTGCT
* *
26275733 CATCTTTGATCTGCCCTCTGTCAATACAGAGACGCCAAATCTGCT
1 -ATCTTCGATCTGCCCTCTGTCAATACAGAGATGCCAAATCTGCT
* *
26275778 ATCTTCGATCTGCTCTCTGTCAATACAGAGTTGCCAAATCTGCT
1 ATCTTCGATCTGCCCTCTGTCAATACAGAGATGCCAAATCTGCT
* *
26275822 ATCTTTGATCTGCTCTCTGTCAATACA
1 ATCTTCGATCTGCCCTCTGTCAATACA
26275849 TCGATCTGCT
Statistics
Matches: 107, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
44 106 0.99
45 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (44 bp):
ATCTTCGATCTGCCCTCTGTCAATACAGAGATGCCAAATCTGCT
Found at i:26275796 original size:109 final size:110
Alignment explanation
Indices: 26275580--26275799 Score: 356
Period size: 109 Copynumber: 2.0 Consensus size: 110
26275570 CAGATTTGCT
26275580 ATCTTCGATCTGCTCCCCGGCTAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCCCTCTGT
1 ATCTTCGATCTGCTCCCCGGCTAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCCCTCTGT
**
26275645 CAATACAGAGACGCCAAATTTTTCATCTTCGATCTGCCCTCTGTC
66 CAATACAGAGACGCCAAATTGCTCATCTTCGATCTGCCCTCTGTC
* *
26275690 ATCTTCGATCTGC-CCTCTG-TCAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCCCTCTG
1 ATCTTCGATCTGCTCCCCGGCT-AATACAGAGATGCCAAATCTGTCATCTTTGATCTGCCCTCTG
*
26275753 TCAATACAGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGTC
65 TCAATACAGAGACGCCAAAT-TGCTCATCTTCGATCTGCCCTCTGTC
26275799 A
1 A
26275800 ATACAGAGTT
Statistics
Matches: 103, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
108 1 0.01
109 87 0.84
110 15 0.15
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.32
Consensus pattern (110 bp):
ATCTTCGATCTGCTCCCCGGCTAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCCCTCTGT
CAATACAGAGACGCCAAATTGCTCATCTTCGATCTGCCCTCTGTC
Found at i:26275890 original size:67 final size:67
Alignment explanation
Indices: 26275782--26275912 Score: 208
Period size: 67 Copynumber: 2.0 Consensus size: 67
26275772 TCTGCTATCT
*** * *
26275782 TCGATCTGCTCTCTGTCAATACAGAGTTGCCAAATCTGCTATCTTTGATCTGCTCTCTGTCAATA
1 TCGATCTGCTCTCTGTCAATACAGAGACACCAAATCTGCTATCTTCGATCTGCCCTCTGTCAATA
26275847 CA
66 CA
*
26275849 TCGATCTGCTCTCTGTCAATATAGAGACACCAAATCTGCTATCTTCGATCTGCCCTCTGTCAAT
1 TCGATCTGCTCTCTGTCAATACAGAGACACCAAATCTGCTATCTTCGATCTGCCCTCTGTCAAT
26275913 TCAGAGACGC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (67 bp):
TCGATCTGCTCTCTGTCAATACAGAGACACCAAATCTGCTATCTTCGATCTGCCCTCTGTCAATA
CA
Found at i:26295027 original size:22 final size:21
Alignment explanation
Indices: 26295002--26295049 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
26294992 TATACGTAAT
* *
26295002 TAATGAATAATAAAATAATATA
1 TAATGAACAATAAAATAA-AAA
**
26295024 TAATTTACAATAAAATAAAAA
1 TAATGAACAATAAAATAAAAA
26295045 TAATG
1 TAATG
26295050 TAAGGAATAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (21 bp):
TAATGAACAATAAAATAAAAA
Found at i:26295083 original size:19 final size:19
Alignment explanation
Indices: 26295056--26295138 Score: 60
Period size: 19 Copynumber: 4.2 Consensus size: 19
26295046 AATGTAAGGA
* *
26295056 ATAATATATAGTAAAATAT
1 ATAACATATAATAAAATAT
*
26295075 ATAACATATAATAAAATTT
1 ATAACATATAATAAAATAT
*
26295094 ATAA-ATAAAATATATAATAAT
1 ATAACATATAATA-A-AAT-AT
* *
26295115 ATAATATGATAAATAATATAT
1 ATAACAT-AT-AATAAAATAT
26295136 ATA
1 ATA
26295139 CTATTTTTAC
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
18 7 0.14
19 21 0.41
20 3 0.06
21 10 0.20
22 4 0.08
23 2 0.04
24 4 0.08
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAACATATAATAAAATAT
Found at i:26295102 original size:13 final size:13
Alignment explanation
Indices: 26295080--26295138 Score: 57
Period size: 13 Copynumber: 4.4 Consensus size: 13
26295070 AATATATAAC
26295080 ATAT-AATAAAAT
1 ATATAAATAAAAT
*
26295092 TTATAAATAAAAT
1 ATATAAATAAAAT
*
26295105 ATATAATAATATAAT
1 ATAT-A-AATAAAAT
*
26295120 ATGATAAATAATAT
1 AT-ATAAATAAAAT
26295134 ATATA
1 ATATA
26295139 CTATTTTTAC
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
12 3 0.08
13 14 0.37
14 9 0.24
15 10 0.26
16 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (13 bp):
ATATAAATAAAAT
Found at i:26295129 original size:17 final size:15
Alignment explanation
Indices: 26295097--26295138 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
26295087 AAAATTTATA
*
26295097 AATAAAATATATAAT
1 AATATAATATATAAT
26295112 AATATAATATGATAAAT
1 AATATAATAT-AT-AAT
26295129 AATAT-ATATA
1 AATATAATATA
26295139 CTATTTTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 10 0.42
16 6 0.25
17 8 0.33
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (15 bp):
AATATAATATATAAT
Found at i:26300584 original size:28 final size:27
Alignment explanation
Indices: 26300516--26300629 Score: 111
Period size: 28 Copynumber: 4.1 Consensus size: 27
26300506 AGCATGACTG
*
26300516 TAAATGTGATTGGGCCTAATGGCCGTA
1 TAAATGTGATTGGGCCTAATGGCCATA
* * *
26300543 TGAATTTGATTTGGGCCTAATGGACCACA
1 TAAATGTGA-TTGGGCCTAATGG-CCATA
*
26300572 TAAATGTGATTGGGCTTAATGGGCCATA
1 TAAATGTGATTGGGCCTAAT-GGCCATA
* * * *
26300600 TGAAGGAGATTGGGCCTAGTGGGCCATA
1 TAAATGTGATTGGGCCTAAT-GGCCATA
26300628 TA
1 TA
26300630 CAGGTATGTG
Statistics
Matches: 70, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
27 7 0.10
28 51 0.73
29 12 0.17
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (27 bp):
TAAATGTGATTGGGCCTAATGGCCATA
Found at i:26317251 original size:31 final size:32
Alignment explanation
Indices: 26317194--26317255 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
26317184 ACGAAGTCAC
* *
26317194 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
26317226 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
26317256 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:26322222 original size:19 final size:19
Alignment explanation
Indices: 26322198--26322237 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
26322188 TTATTTTTTT
* *
26322198 ATTAGAATCGAAAAGTTTA
1 ATTAGAATAGAAAAGTATA
26322217 ATTAGAATAGAAAAGTATA
1 ATTAGAATAGAAAAGTATA
26322236 AT
1 AT
26322238 AAAAGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30
Consensus pattern (19 bp):
ATTAGAATAGAAAAGTATA
Found at i:26328660 original size:16 final size:17
Alignment explanation
Indices: 26328616--26328660 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
26328606 TTCAGTTTGC
*
26328616 ATTTTCGAAAAACCTTT
1 ATTTTCGATAAACCTTT
*
26328633 ATTTTTGATAAACCTTT
1 ATTTTCGATAAACCTTT
*
26328650 GTTTTCG-TAAA
1 ATTTTCGATAAA
26328661 AACATTTTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (17 bp):
ATTTTCGATAAACCTTT
Found at i:26330549 original size:40 final size:40
Alignment explanation
Indices: 26330501--26330648 Score: 260
Period size: 40 Copynumber: 3.7 Consensus size: 40
26330491 GCAAACACAT
* * *
26330501 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
26330541 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
26330581 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
26330621 TTGCCTTCGGGCCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
26330649 TCCAATGCTC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:26334037 original size:58 final size:58
Alignment explanation
Indices: 26333935--26334065 Score: 208
Period size: 58 Copynumber: 2.3 Consensus size: 58
26333925 TTACCCGTTT
* * *
26333935 GGGCTAAATCCATTTCACACATATTCTTCGGGAGGGCTTATATTAGGATCACTCGTCC
1 GGGCTAGATCCTTTTCACACATATTCTTCGGGAGGGCTTATATTAGGATCACCCGTCC
* *
26333993 GGGTTAGATCCTTTTCACACATATTCTTCGGGAGGGCTTATATTAGGATCACCCTTCC
1 GGGCTAGATCCTTTTCACACATATTCTTCGGGAGGGCTTATATTAGGATCACCCGTCC
*
26334051 GGGCTAGATCTTTTT
1 GGGCTAGATCCTTTT
26334066 TAACGTCAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (58 bp):
GGGCTAGATCCTTTTCACACATATTCTTCGGGAGGGCTTATATTAGGATCACCCGTCC
Found at i:26341678 original size:45 final size:47
Alignment explanation
Indices: 26341627--26341714 Score: 117
Period size: 47 Copynumber: 1.9 Consensus size: 47
26341617 CACAGTTTGT
* *
26341627 CATTTGGCCACA-AT-ATATATACACTTTCACGTTCATCACATTGGC
1 CATTTGGCCACATATCATATATACACATTCACATTCATCACATTGGC
** *
26341672 CATTTGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CATTTGGCCACATATCATATATACACATTCACATTCATCACAT
26341715 AAAATTCTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
45 10 0.28
46 1 0.03
47 25 0.69
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (47 bp):
CATTTGGCCACATATCATATATACACATTCACATTCATCACATTGGC
Found at i:26345485 original size:40 final size:40
Alignment explanation
Indices: 26345441--26345639 Score: 263
Period size: 40 Copynumber: 5.0 Consensus size: 40
26345431 GAATACACAT
* * *
26345441 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
26345481 CACCAGCACGAATGCTCTTCGGAACTTAACCCTGATACAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
26345521 CTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
26345561 CTCTAGCACGAATGCTCTTCGAGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
26345601 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
26345640 TAACTCTCAA
Statistics
Matches: 139, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 139 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:26353519 original size:6 final size:6
Alignment explanation
Indices: 26353502--26353532 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
26353492 TTCAAAGGGG
*
26353502 AAATAA AGATAA AAATAA AAATAA AAATAA A
1 AAATAA AAATAA AAATAA AAATAA AAATAA A
26353533 TAAAAGATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:26372959 original size:68 final size:66
Alignment explanation
Indices: 26372886--26373034 Score: 176
Period size: 67 Copynumber: 2.2 Consensus size: 66
26372876 CATCATGTGT
* * * *
26372886 ACAAGAGAGGTACAAGGCATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GGCA-TAT-ATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCA
26372949 TGTAG
62 TGTAG
* * *
26372954 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATGCGTGATACTA-GTGAAGGACACCATGT
26373019 AG
65 AG
26373021 ACAAGAGAGCTACG
1 ACAAGAGAGCTACG
26373035 AGATAAACTG
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
64 25 0.35
65 3 0.04
66 5 0.07
67 26 0.37
68 12 0.17
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCATGTA
G
Found at i:26372989 original size:64 final size:64
Alignment explanation
Indices: 26372910--26373093 Score: 212
Period size: 67 Copynumber: 2.8 Consensus size: 64
26372900 AGGCATTATG
* * *
26372910 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
26372974 ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
26373039 AA
63 AA
* * *
26373041 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
26373094 CGAACTATAT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 26 0.26
66 22 0.22
67 31 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26378001 original size:44 final size:44
Alignment explanation
Indices: 26377938--26378040 Score: 179
Period size: 44 Copynumber: 2.3 Consensus size: 44
26377928 CCGATGTCCT
* *
26377938 AGACATGGTCTTACACGTAAATTTCAAATCGATGTCTGTGCCCC
1 AGACACGGTCTTACACGTAAATTTCAAATCGATGCCTGTGCCCC
*
26377982 AGACACGGTCTTACACGTAAATTTCAAATCGATGCCTGTGTCCC
1 AGACACGGTCTTACACGTAAATTTCAAATCGATGCCTGTGCCCC
26378026 AGACACGGTCTTACA
1 AGACACGGTCTTACA
26378041 TGATAATTCA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
AGACACGGTCTTACACGTAAATTTCAAATCGATGCCTGTGCCCC
Found at i:26382103 original size:15 final size:13
Alignment explanation
Indices: 26382074--26382100 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26382064 GGTCGACAGG
26382074 GACACGCCCGTGT
1 GACACGCCCGTGT
26382087 GACACGCCCGTGT
1 GACACGCCCGTGT
26382100 G
1 G
26382101 TGATTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:26392473 original size:13 final size:13
Alignment explanation
Indices: 26392457--26392489 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26392447 TTTAATTAAA
*
26392457 TTAGTTAATTAGT
1 TTAGATAATTAGT
26392470 TTAGATAATTAGT
1 TTAGATAATTAGT
26392483 TTA-ATAA
1 TTAGATAA
26392490 AGAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:26397881 original size:6 final size:6
Alignment explanation
Indices: 26397863--26397935 Score: 64
Period size: 6 Copynumber: 12.7 Consensus size: 6
26397853 TCCTCCTATT
* *
26397863 TTTTTA TTCTTA TTTTTA TTCTTA -TTTTA --TTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* **
26397908 TTTTCA TTTCAA TTTATTA -TTTTA TTTT
1 TTTTTA TTTTTA TTT-TTA TTTTTA TTTT
26397936 GAAAGACATA
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
4 4 0.07
5 7 0.13
6 42 0.78
7 1 0.02
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:26397916 original size:27 final size:27
Alignment explanation
Indices: 26397859--26397935 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 27
26397849 TGAATCCTCC
*
26397859 TATTTT-TTTATTCTTATTTTTATTCT
1 TATTTTATTTATTTTTATTTTTATTCT
26397885 TATTTTATTTATTTTTATTTTTATT-T
1 TATTTTATTTATTTTTATTTTTATTCT
*
26397911 TCATTTCAATTTATTATTTTATTTT
1 T-ATTT-TATTTA-T-TTTTATTTT
26397936 GAAAGACATA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
26 8 0.18
27 21 0.48
28 5 0.11
29 1 0.02
30 9 0.20
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.75
Consensus pattern (27 bp):
TATTTTATTTATTTTTATTTTTATTCT
Found at i:26402229 original size:40 final size:40
Alignment explanation
Indices: 26402185--26402264 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
26402175 GTTTTTTGAT
*
26402185 TCTTAAGTGTTGTTTTGGTATTTTGGAAATGAGTTTCTAA
1 TCTTAAGTGCTGTTTTGGTATTTTGGAAATGAGTTTCTAA
26402225 TCTTAAGTGCTGTTTTGGTATTTTGGAAATGAGTTTCTAA
1 TCTTAAGTGCTGTTTTGGTATTTTGGAAATGAGTTTCTAA
26402265 CACCGAGATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.23, C:0.06, G:0.23, T:0.49
Consensus pattern (40 bp):
TCTTAAGTGCTGTTTTGGTATTTTGGAAATGAGTTTCTAA
Found at i:26411235 original size:40 final size:40
Alignment explanation
Indices: 26411175--26411318 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
26411165 TATTCGAATG
*
26411175 ATATCCGGGCTAAGTA-CCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAG-ACCCGAAGGCATTTATGCTAGTGACT
* * * *
26411215 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* * *
26411255 ATATCTGGGCTAAGACCCGAAGGCATTTATGCTAGTAACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
26411295 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
26411319 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 2 0.02
40 85 0.96
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:26411308 original size:80 final size:79
Alignment explanation
Indices: 26411175--26411354 Score: 231
Period size: 80 Copynumber: 2.3 Consensus size: 79
26411165 TATTCGAATG
* * * * *
26411175 ATATCCGGGCTAAGTA-CCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCTGGGCTAAG-ACCCGAAGGCATTTATGCTAGTAACCATATCCGGACTAAGACCCGAAGGC
* *
26411239 ATTTGTGCGAGTTGCT
65 -CTTGTGCGAGTGGCT
*
26411255 ATATCTGGGCTAAGACCCGAAGGCATTTATGCTAGTAACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCTGGGCTAAGACCCGAAGGCATTTATGCTAGTAACCATATCCGGACTAAGACCCGAAGGCC
*
26411320 TTGTGCGAGTGGTT
66 TTGTGCGAGTGGCT
26411334 ATATCT-GGCTAA-ATCCCGAAG
1 ATATCTGGGCTAAGA-CCCGAAG
26411355 ATACTTGAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
77 1 0.01
78 13 0.15
79 19 0.21
80 56 0.63
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCTGGGCTAAGACCCGAAGGCATTTATGCTAGTAACCATATCCGGACTAAGACCCGAAGGCC
TTGTGCGAGTGGCT
Found at i:26418508 original size:40 final size:40
Alignment explanation
Indices: 26418464--26418730 Score: 346
Period size: 40 Copynumber: 6.7 Consensus size: 40
26418454 GCTACTTGCT
*
26418464 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
26418504 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
26418544 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
26418584 CAAATGCCTTCGGG-CTTAGCCTGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
26418623 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * *
26418663 CAAATACCTTCGGGACTTAGCCCGGAATTA-A-TCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--TTATAGTAACTCGCA
* * *
26418703 CAAATGTCTTCGGGACTTAACCCTGTTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA
26418731 GCATCCGAAT
Statistics
Matches: 205, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
38 4 0.02
39 33 0.16
40 166 0.81
41 1 0.00
43 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:26418642 original size:119 final size:120
Alignment explanation
Indices: 26418464--26418721 Score: 362
Period size: 119 Copynumber: 2.2 Consensus size: 120
26418454 GCTACTTGCT
* * *
26418464 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* * * *
26418529 -TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA
66 AAT-TAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGGAAT-TAATAACTAGCA
* *
26418584 CAAATGCCTTCGGG-CTTAGCCTGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCG
*
26418647 GAATTAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGGAATTAATCACTAGCA
65 GAATTAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGGAATTAATAACTAGCA
*
26418703 CAAATGTCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
26418722 ACCCTGTTAG
Statistics
Matches: 123, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
118 1 0.01
119 102 0.83
120 20 0.16
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGGAATTAATAACTAGCA
Found at i:26453078 original size:40 final size:40
Alignment explanation
Indices: 26453004--26453225 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
26452994 AACCCAAGTA
* *
26453004 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
26453043 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
26453083 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
26453123 CCTTCGAGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
26453163 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
26453203 CCTTTGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
26453226 CATTCGAATA
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 153 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Done.