Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 77 of 318
Found at i:26455790 original size:40 final size:40
Alignment explanation
Indices: 26455729--26455905 Score: 309
Period size: 40 Copynumber: 4.4 Consensus size: 40
26455719 TGTGCATAGT
* *
26455729 ATTCATGCGGGTTATTTTAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
26455769 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
26455809 ATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
26455849 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
26455889 ATTCGTGCTGGTTATTA
1 ATTCGTGCGGGTTATTA
26455906 CATCCGAGCC
Statistics
Matches: 131, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 131 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
Found at i:26455925 original size:80 final size:80
Alignment explanation
Indices: 26455759--26455925 Score: 262
Period size: 80 Copynumber: 2.1 Consensus size: 80
26455749 CCGGGTTAAG
26455759 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * * *
26455824 TATAACCGGGCTAAG
66 TACAACCGAGCCAAA
* *
26455839 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTAT
1 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
26455904 TACATCCGAGCCAAA
66 TACAACCGAGCCAAA
*
26455919 TTCCGAA
1 TCCCGAA
26455926 AGTATTTATG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGCATTCGTGCGGGTTAT
TACAACCGAGCCAAA
Found at i:26466372 original size:78 final size:80
Alignment explanation
Indices: 26466273--26466446 Score: 273
Period size: 78 Copynumber: 2.2 Consensus size: 80
26466263 TGTGCATAGT
* * *
26466273 ATTCGTGCGGGTTATT-TAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTATTATAATCGGG
1 ATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGG
26466337 GTAACTCCCGAA-GC
66 GTAACTCCCGAAGGC
26466351 ATTCGTGC-GGTTATTATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGG
1 ATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGG
* *
26466415 TTAAGTCCCGAAGGC
66 GTAACTCCCGAAGGC
*
26466430 ATTCGTGCTGGTTATTA
1 ATTCGTGCGGGTTATTA
26466447 CATCGAGCCA
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
77 7 0.08
78 63 0.72
79 10 0.11
80 8 0.09
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (80 bp):
ATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGG
GTAACTCCCGAAGGC
Found at i:26466410 original size:40 final size:40
Alignment explanation
Indices: 26466273--26466446 Score: 273
Period size: 40 Copynumber: 4.4 Consensus size: 40
26466263 TGTGCATAGT
26466273 ATTCGTGCGGGTTATT-TAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
* * * *
26466312 ATTCGTGCTGGTTATTATAATCGGGGTAACTCCCGAA-GC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
26466351 ATTCGTGC-GGTTATTATAACCGGGCTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
26466390 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
26466430 ATTCGTGCTGGTTATTA
1 ATTCGTGCGGGTTATTA
26466447 CATCGAGCCA
Statistics
Matches: 123, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
38 25 0.20
39 35 0.28
40 63 0.51
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (40 bp):
ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
Found at i:26476824 original size:40 final size:40
Alignment explanation
Indices: 26476769--26476945 Score: 291
Period size: 40 Copynumber: 4.4 Consensus size: 40
26476759 TGTGCATAGT
*
26476769 ATTCGTGCGGGTTATTTTAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
* * * *
26476809 ATTCGTGCTGGTTATTATAATCGGGGTAACTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
26476849 ATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
26476889 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
26476929 ATTCGTGCTGGTTATTA
1 ATTCGTGCGGGTTATTA
26476946 CATTCGAGCC
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 126 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (40 bp):
ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
Found at i:26476965 original size:80 final size:80
Alignment explanation
Indices: 26476769--26476965 Score: 232
Period size: 80 Copynumber: 2.5 Consensus size: 80
26476759 TGTGCATAGT
** * ** * * *
26476769 ATTCGTGCGGGTTATTTTAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTATTATAATCGGG
1 ATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTATTATAACCGGG
26476834 GTAACTCCCGAAGGC
66 GTAACTCCCGAAGGC
* * * *
26476849 ATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGG
1 ATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTATTATAACCGGG
* *
26476914 TTAAGTCCCGAAGGC
66 GTAACTCCCGAAGGC
* ** *
26476929 ATTCGTGCTGGTTATTACATTCGAGCCAAATTCCGAA
1 ATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAA
26476966 AGTATTTATG
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 103 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (80 bp):
ATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTATTATAACCGGG
GTAACTCCCGAAGGC
Found at i:26499492 original size:27 final size:26
Alignment explanation
Indices: 26499399--26499784 Score: 81
Period size: 27 Copynumber: 14.6 Consensus size: 26
26499389 TTAGTTTACC
* * *
26499399 AAATTACTGAAATACACTCAACTTGTA
1 AAATTACTCAAATAC-CTCGATTTGTA
* *
26499426 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TA-CCTCGATTTGTA
26499453 AAATTA-TCCAAATATCCTCGATTTGTA
1 AAATTACT-CAAATA-CCTCGATTTGTA
* *
26499480 AAATTACTGAAATA---AGA----TA
1 AAATTACTCAAATACCTCGATTTGTA
* ** **
26499499 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTCA-AATA-CCTCGATTTGTA
* * * * **
26499526 AAATTATTGAAATACCCTTGGTTTACA
1 AAATTACTCAAATA-CCTCGATTTGTA
* ***
26499553 AAATTACCCAAATACCATCGATCAATA
1 AAATTACTCAAATACC-TCGATTTGTA
* *
26499580 AAATTAC-CAAAATACCCCTGGTTTGT-
1 AAATTACTC-AAATACCTC-GATTTGTA
* * *
26499606 AAATTAC-CAAAATACCTTTGGTTTATA
1 AAATTACTC-AAATACC-TCGATTTGTA
* * *
26499633 AAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACTCAAATACCTCGA-TTTGTA
* * *
26499660 AAATTACTAAAATACCCTTTGGTTTGTA
1 AAATTACTCAAATA-CC-TCGATTTGTA
*
26499688 AAATTAC-CAAAATACC-CTTAGTTTGTA
1 AAATTACTC-AAATACCTC-GA-TTTGTA
*
26499715 AAATTAC-CAAAATATCC-CTAGTTTGTA
1 AAATTACTC-AAATA-CCTCGA-TTTGTA
* *
26499742 AAATTA-TCGAAATACCCCTGATTTGTG
1 AAATTACTC-AAATACCTC-GATTTGTA
26499769 AAATTAC-CGAAATACC
1 AAATTACTC-AAATACC
26499785 CTTGTAGGGT
Statistics
Matches: 271, Mismatches: 56, Indels: 64
0.69 0.14 0.16
Matches are distributed among these distances:
18 1 0.00
19 10 0.04
23 4 0.01
26 31 0.11
27 194 0.72
28 31 0.11
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (26 bp):
AAATTACTCAAATACCTCGATTTGTA
Found at i:26499721 original size:82 final size:80
Alignment explanation
Indices: 26499578--26499787 Score: 287
Period size: 82 Copynumber: 2.6 Consensus size: 80
26499568 CATCGATCAA
* * * *
26499578 TAAAATTACCAAAATACCCCTGGTTTGTAAATTACCAAAATACCTTTGGTTTATAAAATTACTAA
1 TAAAATTACTAAAATACCCCTGGTTTGTAAATTACCAAAATACCCTTAGTTTATAAAATTACCAA
26499643 AATACCCCTAGTTTG
66 AATACCCCTAGTTTG
* *
26499658 TAAAATTACTAAAATACCCTTTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACC
1 TAAAATTACTAAAATACCC-CTGGTTTGT-AAATTACCAAAATACCCTTAGTTTATAAAATTACC
*
26499723 AAAATATCCCTAGTTTG
64 AAAATACCCCTAGTTTG
* * *
26499740 TAAAATTA-TCGAAATACCCCTGATTTGTGAAATTACCGAAATACCCTT
1 TAAAATTACT-AAAATACCCCTGGTTTGT-AAATTACCAAAATACCCTT
26499788 GTAGGGTAGA
Statistics
Matches: 115, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
80 18 0.16
81 34 0.30
82 63 0.55
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.34
Consensus pattern (80 bp):
TAAAATTACTAAAATACCCCTGGTTTGTAAATTACCAAAATACCCTTAGTTTATAAAATTACCAA
AATACCCCTAGTTTG
Found at i:26499767 original size:54 final size:54
Alignment explanation
Indices: 26499578--26499786 Score: 257
Period size: 54 Copynumber: 3.9 Consensus size: 54
26499568 CATCGATCAA
* *
26499578 TAAAATTACCAAAATACCCCTG-GTTTGT-AAATTACCAAAATACCTTTGGTTTA
1 TAAAATTACCAAAATACCCCTGAGTTTGTAAAATTACCAAAATACC-CTGGTTTG
* *
26499631 TAAAATTACTAAAATACCCCT-AGTTTGTAAAATTACTAAAATACCCTTTGGTTTG
1 TAAAATTACCAAAATACCCCTGAGTTTGTAAAATTACCAAAATACCC--TGGTTTG
* *
26499686 TAAAATTACCAAAATA-CCCTTAGTTTGTAAAATTACCAAAATATCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTGAGTTTGTAAAATTACCAAAATA-CCCTGGTTTG
* * * *
26499740 TAAAATTATCGAAATACCCCTGA-TTTGTGAAATTACCGAAATACCCT
1 TAAAATTACCAAAATACCCCTGAGTTTGTAAAATTACCAAAATACCCT
26499787 TGTAGGGTAG
Statistics
Matches: 137, Mismatches: 12, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
53 30 0.22
54 57 0.42
55 47 0.34
56 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCCTGAGTTTGTAAAATTACCAAAATACCCTGGTTTG
Found at i:26499785 original size:27 final size:27
Alignment explanation
Indices: 26499578--26499785 Score: 217
Period size: 27 Copynumber: 7.7 Consensus size: 27
26499568 CATCGATCAA
*
26499578 TAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGATTTG
** * *
26499605 T-AAATTACCAAAATACCTTTGGTTTA
1 TAAAATTACCAAAATACCCCTGATTTG
*
26499631 TAAAATTACTAAAATACCCCT-AGTTTG
1 TAAAATTACCAAAATACCCCTGA-TTTG
* * *
26499658 TAAAATTACTAAAATACCCTTTGGTTTG
1 TAAAATTACCAAAATACCC-CTGATTTG
*
26499686 TAAAATTACCAAAATA-CCCTTAGTTTG
1 TAAAATTACCAAAATACCCCTGA-TTTG
*
26499713 TAAAATTACCAAAATATCCCT-AGTTTG
1 TAAAATTACCAAAATACCCCTGA-TTTG
* *
26499740 TAAAATTATCGAAATACCCCTGATTTG
1 TAAAATTACCAAAATACCCCTGATTTG
* *
26499767 TGAAATTACCGAAATACCC
1 TAAAATTACCAAAATACCC
26499786 TTGTAGGGTA
Statistics
Matches: 155, Mismatches: 19, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
26 24 0.15
27 106 0.68
28 25 0.16
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGATTTG
Found at i:26499800 original size:27 final size:27
Alignment explanation
Indices: 26499770--26500099 Score: 464
Period size: 27 Copynumber: 12.3 Consensus size: 27
26499760 TGATTTGTGA
*
26499770 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26499797 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26499824 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
26499851 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
26499878 AATTATTGCAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26499905 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
26499932 AATTACCAAAATACTCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
26499959 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
26499986 AATTATCGCAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26500013 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26500040 AATTACCGAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26500067 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26500093 AATTACC
1 AATTACC
26500100 ATTTTTCCCC
Statistics
Matches: 270, Mismatches: 33, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
26 16 0.06
27 254 0.94
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26500578 original size:22 final size:22
Alignment explanation
Indices: 26500526--26500590 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
26500516 TTAAAGCCTT
* *
26500526 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
26500548 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* * *
26500570 TTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
26500591 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:26508045 original size:26 final size:26
Alignment explanation
Indices: 26508016--26508123 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
26508006 TGGTACAAAT
26508016 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * **
26508042 TGATAATGGATTAGGTAACTAATCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26508068 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26508094 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26508120 TGAT
1 TGAT
26508124 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26510460 original size:40 final size:41
Alignment explanation
Indices: 26510371--26510520 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
26510361 CGCTGACTCA
* *
26510371 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
26510412 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
26510452 AAAAGCCCTTTGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
26510493 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
26510521 TAAACCCCAA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:26518723 original size:39 final size:41
Alignment explanation
Indices: 26518625--26518783 Score: 214
Period size: 41 Copynumber: 3.9 Consensus size: 41
26518615 CGATTCTTAG
*
26518625 CACTGACTCAAAAAGCCCTTCGAGACCAAGCTCGGATTATGA
1 CACTGGCTC-AAAAGCCCTTCGAGACCAAGCTCGGATTATGA
* * * * * * * *
26518667 CATTGGCCCGAAGGCCCTTCGAAACTAGGTTCGG-TT-TGA
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGA
26518706 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGA
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGA
26518747 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATT
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATT
26518784 TAAACCCCAA
Statistics
Matches: 98, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 29 0.30
40 4 0.04
41 59 0.60
42 6 0.06
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.21
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGA
Found at i:26521050 original size:8 final size:8
Alignment explanation
Indices: 26521037--26521066 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
26521027 AGATCGGCAC
26521037 AAGCCGAA
1 AAGCCGAA
26521045 AAGCCGAA
1 AAGCCGAA
*
26521053 ATGCCGAA
1 AAGCCGAA
26521061 AAGCCG
1 AAGCCG
26521067 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:26521496 original size:27 final size:27
Alignment explanation
Indices: 26521456--26521596 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
26521446 AGGAAGTGTC
*
26521456 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
26521483 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
26521509 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
26521537 CTGGTGGCACTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
26521564 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
26521591 CTGGTG
1 CTGGTG
26521597 ACTTCGTCAA
Statistics
Matches: 100, Mismatches: 7, Indels: 14
0.83 0.06 0.12
Matches are distributed among these distances:
26 11 0.11
27 85 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:26521534 original size:54 final size:54
Alignment explanation
Indices: 26521452--26521596 Score: 247
Period size: 54 Copynumber: 2.7 Consensus size: 54
26521442 ATGGAGGAAG
*
26521452 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATC
26521506 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATC
* *
26521560 TGTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 TGTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
26521597 ACTTCGTCAA
Statistics
Matches: 87, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 6 0.07
54 81 0.93
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (54 bp):
TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATC
Found at i:26521610 original size:27 final size:26
Alignment explanation
Indices: 26521456--26521614 Score: 104
Period size: 27 Copynumber: 5.9 Consensus size: 26
26521446 AGGAAGTGTC
* * * *
26521456 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCA-AAATATCTGTT
* * *
26521483 CTGGTGGCTCTGCCACATATATCTGTC
1 CTGGTGACTCTGCCA-AAATATCTGTT
* * * *
26521510 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCA-AAATATCTGTT
* * *
26521537 CTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGACTCTGCCA-AAATATCTGTT
* *
26521564 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCAAAATATCTGT-T
*
26521591 CTGGTGACT-TCGTCAAAATATCTG
1 CTGGTGACTCT-GCCAAAATATCTG
26521615 GCAGCCTCGT
Statistics
Matches: 109, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 9 0.08
27 100 0.92
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (26 bp):
CTGGTGACTCTGCCAAAATATCTGTT
Found at i:26523719 original size:46 final size:46
Alignment explanation
Indices: 26523652--26523872 Score: 270
Period size: 46 Copynumber: 4.8 Consensus size: 46
26523642 TGTAACCCGC
26523652 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
26523698 CCATAAGTGAACTCAGG-CTCAACTCAACGAGCTT-GGATGC-CTAG-TT
1 CCATAAGTGAACTC-GGACTCAACTCAACGAG-TTCGG--GCGTTCGCAT
* *** *
26523744 ACATCTCTCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
26523791 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
26523837 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
26523873 ATGCCCAAAT
Statistics
Matches: 147, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
45 2 0.01
46 110 0.75
47 33 0.22
48 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:26529707 original size:26 final size:26
Alignment explanation
Indices: 26529678--26529837 Score: 248
Period size: 26 Copynumber: 6.2 Consensus size: 26
26529668 TGGTACAAAT
*
26529678 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATATTCCA
26529704 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATATTCCA
* *
26529730 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATATTCCA
26529756 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATATTCCA
* * * *
26529782 TGATAATGGGTTACGTAAATGTTTCA
1 TGATAATGGATTAGGTAAATATTCCA
*
26529808 TGATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATATTCCA
26529834 TGAT
1 TGAT
26529838 GGGCATTTAA
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 121 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATATTCCA
Found at i:26529744 original size:52 final size:52
Alignment explanation
Indices: 26529678--26529837 Score: 284
Period size: 52 Copynumber: 3.1 Consensus size: 52
26529668 TGGTACAAAT
*
26529678 TGATAATGGATTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
26529730 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * *
26529782 TGATAATGGGTTACGTAAATGTTTCATGATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
26529834 TGAT
1 TGAT
26529838 GGGCATTTAA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 104 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:26531475 original size:27 final size:27
Alignment explanation
Indices: 26531435--26531575 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
26531425 AGGAAGCGTC
*
26531435 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
26531462 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
**
26531488 CCTGGTGGCTAGGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
26531516 CTGGTGGCACTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
26531543 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
26531570 CTGGTG
1 CTGGTG
26531576 ACTTCGTCAA
Statistics
Matches: 98, Mismatches: 9, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 83 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:26531514 original size:54 final size:54
Alignment explanation
Indices: 26531432--26531575 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
26531422 TGGAGGAAGC
*
26531432 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCT
*
26531486 GTCCTGGTGGCTAGGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCT
* *
26531540 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
26531576 ACTTCGTCAA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCT
Found at i:26537552 original size:40 final size:40
Alignment explanation
Indices: 26537501--26538327 Score: 1395
Period size: 40 Copynumber: 20.6 Consensus size: 40
26537491 CATTTGAATG
26537501 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
26537541 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
26537581 ATATCCGGGTTAAGACCCAAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
26537621 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
26537661 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
26537701 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
26537741 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
26537781 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGATTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
26537821 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
26537861 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
26537901 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
26537941 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
26537981 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCAAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
26538021 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
26538061 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
26538101 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGATAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTG--AT
* *
26538143 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
26538183 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
26538223 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
26538263 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
26538303 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
26538328 ATTGAGCTTG
Statistics
Matches: 742, Mismatches: 41, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.00
40 700 0.94
41 1 0.00
42 39 0.05
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:26543613 original size:47 final size:47
Alignment explanation
Indices: 26543559--26543744 Score: 264
Period size: 47 Copynumber: 4.0 Consensus size: 47
26543549 TTAGGATTTT
* ** * *
26543559 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATAGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
26543606 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
26543653 ATGTGATGAATGTGAGCACGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
26543700 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGC
26543745 TAGTGTGAAA
Statistics
Matches: 123, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 123 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:26544014 original size:37 final size:37
Alignment explanation
Indices: 26543906--26544014 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
26543896 GGAAATATAT
*
26543906 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
26543943 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
26543980 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
26544015 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:26545199 original size:26 final size:25
Alignment explanation
Indices: 26545149--26545255 Score: 160
Period size: 26 Copynumber: 4.2 Consensus size: 25
26545139 TGGTACAAAT
26545149 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
* **
26545174 TGATAATGGATTAGGTAACTAATCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
26545200 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
26545226 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
26545252 TGAT
1 TGAT
26545256 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
25 11 0.15
26 60 0.82
27 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:26546894 original size:27 final size:27
Alignment explanation
Indices: 26546854--26546940 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
26546844 AGGAAGCGTC
26546854 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* * *
26546881 CTGGTGGCTCTGCCAC-ATATATTTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
* *
26546908 CTGGTGGCTTTACCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
26546935 CTGGTG
1 CTGGTG
26546941 ACTTCGTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
26 7 0.14
27 42 0.84
28 1 0.02
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:26551504 original size:19 final size:19
Alignment explanation
Indices: 26551482--26551518 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26551472 GGAATAATAT
*
26551482 ATATAGTAAAATATATAAC
1 ATATAATAAAATATATAAC
*
26551501 ATATAATAAAATTTATAA
1 ATATAATAAAATATATAA
26551519 ATAAAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (19 bp):
ATATAATAAAATATATAAC
Found at i:26551509 original size:10 final size:10
Alignment explanation
Indices: 26551482--26551541 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
26551472 GGAATAATAT
*
26551482 ATATAGTAAA
1 ATATAATAAA
*
26551492 ATAT-ATAAC
1 ATATAATAAA
26551501 ATATAATAAA
1 ATATAATAAA
26551511 ATTTATAAATAAA
1 A--TAT-AATAAA
* *
26551524 ATATATTATA
1 ATATAATAAA
26551534 ATATAATA
1 ATATAATA
26551542 TGATAAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 7 0.17
10 20 0.50
11 3 0.08
12 3 0.08
13 7 0.17
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (10 bp):
ATATAATAAA
Found at i:26555944 original size:23 final size:25
Alignment explanation
Indices: 26555918--26555969 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
26555908 TTTTAATCCT
26555918 TTTTAAAT-TTTT-TATATAATTTA
1 TTTTAAATATTTTATATATAATTTA
*
26555941 TTTTAAATATTTTATATATTATTTA
1 TTTTAAATATTTTATATATAATTTA
26555966 TTTT
1 TTTT
26555970 TACTATAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 8 0.31
24 4 0.15
25 14 0.54
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTAAATATTTTATATATAATTTA
Found at i:26556066 original size:13 final size:14
Alignment explanation
Indices: 26556038--26556090 Score: 76
Period size: 15 Copynumber: 3.9 Consensus size: 14
26556028 TATTATTCAT
26556038 ATTTTATTATAT--
1 ATTTTATTATATAC
26556050 ATTTTATT-TATAC
1 ATTTTATTATATAC
26556063 ATTTTATTATATATC
1 ATTTTATTATATA-C
26556078 ATTTTATTATATA
1 ATTTTATTATATA
26556091 TTATTCATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
11 3 0.08
12 8 0.22
13 8 0.22
14 4 0.11
15 14 0.38
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTTTATTATATAC
Found at i:26556075 original size:27 final size:27
Alignment explanation
Indices: 26556038--26556111 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 27
26556028 TATTATTCAT
26556038 ATTTTA-T-TATATATTTTATTTATAC
1 ATTTTATTATATATATTTTATTTATAC
*
26556063 ATTTTATTATATATCATTTTA-TTATAT
1 ATTTTATTATATAT-ATTTTATTTATAC
26556090 ATTATTCATTATAT-TATTTTAT
1 ATT-TT-ATTATATATATTTTAT
26556112 ATAATTATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
25 6 0.14
26 1 0.02
27 19 0.45
28 9 0.21
29 7 0.17
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (27 bp):
ATTTTATTATATATATTTTATTTATAC
Found at i:26556082 original size:15 final size:14
Alignment explanation
Indices: 26556036--26556111 Score: 81
Period size: 13 Copynumber: 5.6 Consensus size: 14
26556026 TGTATTATTC
26556036 ATATTTTA-T-TAT
1 ATATTTTATTATAT
26556048 ATATTTTATT-TAT
1 ATATTTTATTATAT
*
26556061 ACATTTTATTATAT
1 ATATTTTATTATAT
26556075 ATCATTTTATTATAT
1 AT-ATTTTATTATAT
*
26556090 AT-TATTCATTATAT
1 ATAT-TTTATTATAT
26556104 -TATTTTAT
1 ATATTTTAT
26556112 ATAATTATTT
Statistics
Matches: 55, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.15
13 19 0.35
14 14 0.25
15 14 0.25
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (14 bp):
ATATTTTATTATAT
Found at i:26556118 original size:25 final size:26
Alignment explanation
Indices: 26556041--26556141 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 26
26556031 TATTCATATT
26556041 TTATTATA-TATTTTATTTATACATT-
1 TTATTATATTATTTTA-TTATACATTA
*
26556066 TTATTATATATCATTTTATTATATATTA
1 TTATTATAT-T-ATTTTATTATACATTA
26556094 TTCATTATATTATTTTA-TATA-ATTA
1 TT-ATTATATTATTTTATTATACATTA
26556119 TTTATTAT-TTATTATTATGTATA
1 -TTATTATATTATT-TTAT-TATA
26556142 ATTTAAAAAA
Statistics
Matches: 66, Mismatches: 1, Indels: 16
0.80 0.01 0.19
Matches are distributed among these distances:
24 5 0.08
25 20 0.30
26 6 0.09
27 19 0.29
28 9 0.14
29 7 0.11
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (26 bp):
TTATTATATTATTTTATTATACATTA
Found at i:26556126 original size:15 final size:14
Alignment explanation
Indices: 26556008--26556134 Score: 73
Period size: 15 Copynumber: 9.7 Consensus size: 14
26555998 ATTATTATAA
26556008 ATATATTATTT-TT
1 ATATATTATTTATT
*
26556021 ATCTATGTA-TTATT
1 ATATAT-TATTTATT
*
26556035 -CATA-T-TTTATT
1 ATATATTATTTATT
26556046 ATATA-T-TTTATT
1 ATATATTATTTATT
*
26556058 -TATA-CATTTTATT
1 ATATATTA-TTTATT
*
26556071 ATATATCATTTTATT
1 ATATATTA-TTTATT
*
26556086 ATATATTATTCA-T
1 ATATATTATTTATT
26556099 -TATATTA-TT-TT
1 ATATATTATTTATT
26556110 ATATAATTATTTATT
1 ATAT-ATTATTTATT
*
26556125 ATTTATTATT
1 ATATATTATT
26556135 ATGTATAATT
Statistics
Matches: 92, Mismatches: 9, Indels: 25
0.73 0.07 0.20
Matches are distributed among these distances:
11 12 0.13
12 20 0.22
13 20 0.22
14 19 0.21
15 21 0.23
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (14 bp):
ATATATTATTTATT
Found at i:26556314 original size:35 final size:34
Alignment explanation
Indices: 26556218--26556314 Score: 88
Period size: 35 Copynumber: 2.7 Consensus size: 34
26556208 TAATACTCTA
**
26556218 AAATTATTATATCATATAGTTTTTTTATATTATTTT
1 AAATTATTATATCATATA--TTTTTTATAAAATTTT
* * *
26556254 AATTCCTATTATATAATGT-TATTTTTATAAAATTATT
1 AAAT--TATTATATCATATAT-TTTTTATAAAATT-TT
26556291 AAATTATTATATCATATATTTTTT
1 AAATTATTATATCATATATTTTTT
26556315 TATATATTAA
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
35 17 0.35
36 15 0.31
37 5 0.10
38 11 0.23
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (34 bp):
AAATTATTATATCATATATTTTTTATAAAATTTT
Found at i:26556331 original size:35 final size:34
Alignment explanation
Indices: 26556219--26556331 Score: 106
Period size: 36 Copynumber: 3.1 Consensus size: 34
26556209 AATACTCTAA
26556219 AATTATTATATCATATAGTTTTTTTATATTATT-TT
1 AATTATTATATCATATA-TTTTTTTATA-TATTATT
* *
26556254 AATTCCTATTATAT-A-ATGTTATTTTTATAAAATTATT
1 AA-T--TATTATATCATATATT-TTTTTAT-ATATTATT
26556291 AAATTATTATATCATATATTTTTTTATATATTAATT
1 -AATTATTATATCATATATTTTTTTATATATT-ATT
26556327 AATTA
1 AATTA
26556332 ACCATTTTTT
Statistics
Matches: 64, Mismatches: 4, Indels: 20
0.73 0.05 0.23
Matches are distributed among these distances:
35 21 0.33
36 24 0.38
37 9 0.14
38 10 0.16
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (34 bp):
AATTATTATATCATATATTTTTTTATATATTATT
Found at i:26563710 original size:14 final size:15
Alignment explanation
Indices: 26563691--26563720 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26563681 ATGAATTAAA
26563691 AGAAGGC-ATTAAGG
1 AGAAGGCAATTAAGG
26563705 AGAAGGCAATTAAGG
1 AGAAGGCAATTAAGG
26563720 A
1 A
26563721 AAGAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.47, C:0.07, G:0.33, T:0.13
Consensus pattern (15 bp):
AGAAGGCAATTAAGG
Found at i:26564147 original size:19 final size:19
Alignment explanation
Indices: 26564123--26564213 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
26564113 ATAATCTTCA
26564123 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26564142 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
26564161 ATGATA--CAACCTTAGAT
1 ATGATATGCAATCTTAGAT
26564178 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26564196 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
26564214 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 15 0.22
19 37 0.55
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:26564239 original size:22 final size:22
Alignment explanation
Indices: 26564123--26564236 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
26564113 ATAATCTTCA
26564123 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26564142 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
26564161 ATGATA--CAACCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
26564178 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26564196 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
26564218 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
26564237 GATTTAATTT
Statistics
Matches: 80, Mismatches: 4, Indels: 18
0.78 0.04 0.18
Matches are distributed among these distances:
17 13 0.16
18 13 0.16
19 34 0.43
22 8 0.10
23 12 0.15
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:26572710 original size:89 final size:87
Alignment explanation
Indices: 26572581--26572742 Score: 200
Period size: 89 Copynumber: 1.8 Consensus size: 87
26572571 ATTCGACGGA
* * *
26572581 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACAC-T-GAAGCAGATCCAAGATG
26572646 ATTTGGCATCCTTGCGTTTACAAG
64 ATTTGGCATCCTTGCGTTTACAAG
* * ** * * *
26572670 GAGCAGATCGAAGACATAGTAGATTTGGCTTTCACG-TGTTTACGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTC-CGATGTTTACACTGAAGCAGATCCAAGATGA
26572734 TTTGGCATC
65 TTTGGCATC
26572743 TATGTACTGT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 25 0.40
88 1 0.02
89 35 0.56
90 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCGTTTACAAG
Found at i:26572981 original size:78 final size:78
Alignment explanation
Indices: 26572775--26572989 Score: 297
Period size: 78 Copynumber: 2.8 Consensus size: 78
26572765 CGAAGAAACA
* * *
26572775 GATTTGGCATCTCCACATTCGACGGAGAGCAGATCGAAGACATAGCAA-ATCTGACCTTCATTGA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATA-AAAGATCTGACCTTCATTGA
26572839 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
*** * * **
26572853 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAAAAGATCTGACCTTCATTGAA
26572918 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
26572931 GATTTGGCATCTCCATATTCGATGGAGAACAGATCAAAGACATAAAAGATCTAACCTTC
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAAAAGATCTGACCTTC
26572990 GGATGTTTTC
Statistics
Matches: 117, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
77 1 0.01
78 116 0.99
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAAAAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:26573248 original size:376 final size:376
Alignment explanation
Indices: 26572555--26573356 Score: 1325
Period size: 376 Copynumber: 2.1 Consensus size: 376
26572545 CGAAGAAACA
* *
26572555 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAACAGATCTAACCTTCGGATGT
* *
26572620 TTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGAC
66 TTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCATTGACAAGGAGCAGATCGAAGAC
* *
26572685 ATAGTAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTATGTAC
131 ATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAACAGATCTAAGATGATTTGGCATCTATGTAC
* *
26572750 TGTCAGAGAATAAATCGAAGAAACAGATTTGGCATCTCCACATTCGACGGAGAGCAGATCGAAGA
196 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCACATTCGACAGAGAGCAGATCGAAGA
*
26572815 CATAGCAAATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGG
261 CATAGCAAATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
* *
26572880 AGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGAT
326 AGCAGATCAAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGAT
* * *
26572931 GATTTGGCATCTCCATATTCGATGGAGAACAGATCAAAGACATAAAAGATCTAACCTTCGGATGT
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAACAGATCTAACCTTCGGATGT
*
26572996 TTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCATTGACAAGGAGCGGATCGAAGAC
66 TTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCATTGACAAGGAGCAGATCGAAGAC
* *
26573061 ATAGCATATTTGGCTTTCACGTGTTTACGCTGAAACAGATCTAAGATGATTTGGCATCTCTGTAC
131 ATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAACAGATCTAAGATGATTTGGCATCTATGTAC
* * * * *
26573126 TGTCGGAGAACAAATTGAAGAAACAGATTTGGCATCTTCATATTCGACAGAGAGTAGATCGAAGA
196 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCACATTCGACAGAGAGCAGATCGAAGA
* ** *
26573191 CATAGTAGGTCTGACCTTGATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
261 CATAGCAAATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
*
26573256 AGCAGATCGAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGAT
326 AGCAGATCAAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGAT
** * *
26573307 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAACAGAT
26573357 TGGACCTTCA
Statistics
Matches: 392, Mismatches: 34, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
376 392 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (376 bp):
GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAACAGATCTAACCTTCGGATGT
TTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCATTGACAAGGAGCAGATCGAAGAC
ATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAACAGATCTAAGATGATTTGGCATCTATGTAC
TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCACATTCGACAGAGAGCAGATCGAAGA
CATAGCAAATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
AGCAGATCAAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGAT
Found at i:26573282 original size:78 final size:78
Alignment explanation
Indices: 26573181--26573601 Score: 711
Period size: 78 Copynumber: 5.4 Consensus size: 78
26573171 GACAGAGAGT
** * *
26573181 AGATCGAAGACATAGTAGGTCTGACCTTGATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
1 AGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
26573246 TTAGACGGGGAGC
66 TTAGACGGGGAGC
*
26573259 AGATCGAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
1 AGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
26573324 TTAGACGGGGAGC
66 TTAGACGGGGAGC
*
26573337 AGATCAAAGACATAACAGAT-TGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
1 AGATCGAAGACATAACAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
*
26573401 ACTAGACGGGGAGC
65 ATTAGACGGGGAGC
* *
26573415 AGATCGAAGACACAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
1 AGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
*
26573480 TTAGACGGGGAGT
66 TTAGACGGGGAGC
26573493 AGATCGAAGACATAACAGAT-TGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
1 AGATCGAAGACATAACAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
26573557 ATTAGACGGGGAGC
65 ATTAGACGGGGAGC
*
26573571 AGATCGAAGACATAGCAGATCTGACCTTCAT
1 AGATCGAAGACATAACAGATCTGACCTTCAT
26573602 GTGTTTACAT
Statistics
Matches: 322, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
77 2 0.01
78 318 0.99
79 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (78 bp):
AGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
TTAGACGGGGAGC
Found at i:26573741 original size:44 final size:45
Alignment explanation
Indices: 26573541--26573814 Score: 277
Period size: 45 Copynumber: 6.1 Consensus size: 45
26573531 GATCCAAGAT
*
26573541 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * * *
26573588 GATCTGACCT-TCATGTGTTTACATC--GAAGTAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * *
26573633 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
26573678 GATTTGGCATCTCTATATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
26573722 GATTTGGCGTCTCTGTATTAGACGGGAAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * *
26573767 GATTTGGCGTCTCTGTATTAGACGGGGAGCAAATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
26573812 GAT
1 GAT
26573815 ATCGCCTTCC
Statistics
Matches: 184, Mismatches: 36, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
43 1 0.01
44 43 0.23
45 110 0.60
46 4 0.02
47 21 0.11
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:26573785 original size:134 final size:136
Alignment explanation
Indices: 26573541--26573801 Score: 343
Period size: 134 Copynumber: 1.9 Consensus size: 136
26573531 GATCCAAGAT
* *
26573541 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGA-ATAGCAGATCTGACCTTCATGTGA
* *
26573606 TTACATCGAAGTAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGGA
65 TTACATCGAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGGA
26573671 GATAACA
130 GATAACA
* * * *
26573678 GATTTGGCATCTCTATATTAGACGGGGAGCAGATTGAAG-A-AGCAGATTTGGCGTCTC-TGT-A
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACCT-TCATGTGA
* * * *
26573739 TTAGA-CGGGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAAATC
65 TTACATC--GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATC
26573802 AAAGATAGCA
Statistics
Matches: 109, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
132 1 0.01
133 4 0.04
134 64 0.59
135 3 0.03
137 37 0.34
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (136 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACCTTCATGTGAT
TACATCGAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGGAG
ATAACA
Found at i:26573786 original size:89 final size:89
Alignment explanation
Indices: 26573631--26573797 Score: 273
Period size: 89 Copynumber: 1.9 Consensus size: 89
26573621 TCCAAGATGA
*
26573631 CAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTATAT
1 CAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATAT
26573696 TAGACGGGGAGCAGATTGAAGAAG
66 TAGACGGGGAGCAGATTGAAGAAG
* * * *
26573720 CAGATTTGGCGTCTCTGTATTAGAC-GGGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA
1 CAGATTTGGCATCTCTGTATTAGACAGGG-AGCAAATCGAAGATAACAGATTTGGCATCTCTATA
26573784 TTAGACGGGGAGCA
65 TTAGACGGGGAGCA
26573798 AATCAAAGAT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
88 3 0.04
89 69 0.96
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (89 bp):
CAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATAT
TAGACGGGGAGCAGATTGAAGAAG
Found at i:26573842 original size:89 final size:89
Alignment explanation
Indices: 26573642--26573820 Score: 243
Period size: 89 Copynumber: 2.0 Consensus size: 89
26573632 AGATTTGGCA
* *
26573642 TCTCTGTATTAGACAGGG-AGCAAATCGGAGATAACAGATTTGGCATCTCTATATTAGACGGGGA
1 TCTCTGTATTAGAC-GGGAAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTAGACGGGGA
* ** * *
26573706 GCAGATTGAAGAAGCAGATTTGGCG
65 GCAAATCAAAGAAGCAGATTCGCCG
* *
26573731 TCTCTGTATTAGACGGGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAG
1 TCTCTGTATTAGACGGGAAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAG
26573796 CAAATCAAAGATAGCAGATATCGCC
66 CAAATCAAAGA-AGCAGAT-TCGCC
26573821 TTCCTGAGTT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
88 3 0.04
89 65 0.83
90 7 0.09
91 3 0.04
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (89 bp):
TCTCTGTATTAGACGGGAAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAG
CAAATCAAAGAAGCAGATTCGCCG
Found at i:26574230 original size:35 final size:37
Alignment explanation
Indices: 26574159--26574256 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
26574149 ATAATCTTCA
26574159 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
26574197 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
26574232 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
26574257 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:26574256 original size:17 final size:19
Alignment explanation
Indices: 26574159--26574249 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
26574149 ATAATCTTCA
26574159 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26574178 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26574197 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26574214 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26574232 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
26574250 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:26574275 original size:22 final size:22
Alignment explanation
Indices: 26574159--26574272 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
26574149 ATAATCTTCA
26574159 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26574178 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26574197 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26574214 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26574232 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
26574254 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
26574273 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:26583242 original size:79 final size:79
Alignment explanation
Indices: 26583111--26583270 Score: 266
Period size: 79 Copynumber: 2.0 Consensus size: 79
26583101 ATTTTTCATC
* *
26583111 TTTTCAATTTAGTCCCTAAATCATGATTTCATCAAAATTCCCTTAACAAAAGTTGTTTATATATC
1 TTTTCAATTTAGCCCCTAAATCATGATTTCATCAAAATTCCCTTAACAAAAGTTGTCTATATATC
*
26583176 AACAACTTTCCATT
66 AAAAACTTTCCATT
* *
26583190 TTTTCAATTTAGCCCCTAAATCATGATTTCATCAAAATTTCCTTAACAAAAGTTGTCTATCTATC
1 TTTTCAATTTAGCCCCTAAATCATGATTTCATCAAAATTCCCTTAACAAAAGTTGTCTATATATC
*
26583255 AAAAACTTTTCATT
66 AAAAACTTTCCATT
26583269 TT
1 TT
26583271 CTACCATAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (79 bp):
TTTTCAATTTAGCCCCTAAATCATGATTTCATCAAAATTCCCTTAACAAAAGTTGTCTATATATC
AAAAACTTTCCATT
Found at i:26591282 original size:25 final size:23
Alignment explanation
Indices: 26591198--26591302 Score: 90
Period size: 22 Copynumber: 4.5 Consensus size: 23
26591188 TGTACTATTA
*
26591198 AACAGAGAGCATTAAAGTGCTAT
1 AACAGAGAGCATTAATGTGCTAT
*
26591221 -ACAGAGAGCA-CAGATGTGCTA-
1 AACAGAGAGCATTA-ATGTGCTAT
* *
26591242 AACGGAGAGCACTAATGTGCTAAT
1 AACAGAGAGCATTAATGTGCT-AT
*
26591266 AATCAGAGAGCATTAATGTACTAAT
1 AA-CAGAGAGCATTAATGTGCT-AT
*
26591291 AATCAGATAGCA
1 AA-CAGAGAGCA
26591303 CGCTAGAGCT
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.01
22 33 0.49
23 2 0.03
24 2 0.03
25 30 0.44
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (23 bp):
AACAGAGAGCATTAATGTGCTAT
Found at i:26595316 original size:4 final size:4
Alignment explanation
Indices: 26595307--26595338 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
26595297 GATGATAGAT
26595307 GGTG GGTG GGTG GGTG GGTG GGTG GGTG GGTG
1 GGTG GGTG GGTG GGTG GGTG GGTG GGTG GGTG
26595339 TGTGTGTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.75, T:0.25
Consensus pattern (4 bp):
GGTG
Found at i:26597649 original size:9 final size:9
Alignment explanation
Indices: 26597624--26597656 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
26597614 TGTTATTAAA
26597624 GGTTAAAAT
1 GGTTAAAAT
26597633 GG-TAAAAT
1 GGTTAAAAT
26597641 GGTTAAAAT
1 GGTTAAAAT
26597650 GGCTTAA
1 GG-TTAA
26597657 TTAACTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.36
9 10 0.45
10 4 0.18
ACGTcount: A:0.42, C:0.03, G:0.24, T:0.30
Consensus pattern (9 bp):
GGTTAAAAT
Found at i:26600864 original size:4 final size:4
Alignment explanation
Indices: 26600855--26600885 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
26600845 CTTTTCTATC
26600855 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCT
26600886 CACGTTTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:26601746 original size:48 final size:48
Alignment explanation
Indices: 26601663--26601804 Score: 196
Period size: 48 Copynumber: 3.0 Consensus size: 48
26601653 TACTTAGGAG
* * * *
26601663 TCTCGCACCCTAAGTGCTAATATCATAGCCCGAAGCCAACTCAATGAA
1 TCTCACACCCGAAGTGCTAATATCATGGCCTGAAGCCAACTCAATGAA
* *
26601711 TCTCACACCTGAAGTGCCAATATCATGGCCTGAAGCCAACTCAATGAA
1 TCTCACACCCGAAGTGCTAATATCATGGCCTGAAGCCAACTCAATGAA
* *
26601759 TCTCGCACCCGAAGTGCTAATATCATGG-CTCAAAGCCAACTCAATG
1 TCTCACACCCGAAGTGCTAATATCATGGCCT-GAAGCCAACTCAATG
26601805 TAACCCCTAA
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 2 0.02
48 81 0.98
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.21
Consensus pattern (48 bp):
TCTCACACCCGAAGTGCTAATATCATGGCCTGAAGCCAACTCAATGAA
Found at i:26603495 original size:24 final size:24
Alignment explanation
Indices: 26603464--26603600 Score: 87
Period size: 24 Copynumber: 5.5 Consensus size: 24
26603454 CCATATAATA
*
26603464 GGAAGCTCATAACAGCCATAATCG
1 GGAAGCTCATAAAAGCCATAATCG
*
26603488 GGAAGCTCATAAAAGCCATTATCG
1 GGAAGCTCATAAAAGCCATAATCG
* * * * *
26603512 GGTAGCTTCA-GAGAGTCATTAATTG
1 GGAAGC-TCATAAAAGCCA-TAATCG
* * *
26603537 AGAAGCTCATGAAATAGCCTTTAATCA
1 GGAAGCTCAT-AAA-AGCC-ATAATCG
** * *
26603564 GGAAGCTCCGAAGATCCATATATCG
1 GGAAGCTCATAAAAGCCATA-ATCG
26603589 GGAAGCTCATAA
1 GGAAGCTCATAA
26603601 GAGTTGTTGT
Statistics
Matches: 81, Mismatches: 25, Indels: 13
0.68 0.21 0.11
Matches are distributed among these distances:
24 37 0.46
25 27 0.33
26 3 0.04
27 14 0.17
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.23
Consensus pattern (24 bp):
GGAAGCTCATAAAAGCCATAATCG
Found at i:26603700 original size:25 final size:25
Alignment explanation
Indices: 26603669--26603742 Score: 107
Period size: 25 Copynumber: 3.0 Consensus size: 25
26603659 GCTATTAATG
*
26603669 GGAAGCTCGTTAGAGCCATATATCA
1 GGAAGCTCGTAAGAGCCATATATCA
26603694 GGAAGCTCGTAAGAGCCATATATCA
1 GGAAGCTCGTAAGAGCCATATATCA
*
26603719 GGAAGCTC-AAGAGAGCCA-ATATCA
1 GGAAGCTCGTA-AGAGCCATATATCA
26603743 AGATGCTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
24 7 0.15
25 39 0.85
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (25 bp):
GGAAGCTCGTAAGAGCCATATATCA
Found at i:26603756 original size:24 final size:24
Alignment explanation
Indices: 26603680--26603763 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 24
26603670 GAAGCTCGTT
* *
26603680 AGAGCCATATATCAGGAAGCTCGTA-
1 AGAGCCA-ATATCAAGAAGCTC-AAG
*
26603705 AGAGCCATATATCAGGAAGCTCAAG
1 AGAGCCA-ATATCAAGAAGCTCAAG
* * *
26603730 AGAGCCAATATCAAGATGCTTATG
1 AGAGCCAATATCAAGAAGCTCAAG
*
26603754 AGAGCTAATA
1 AGAGCCAATA
26603764 ACGGGACGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
24 23 0.44
25 29 0.56
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (24 bp):
AGAGCCAATATCAAGAAGCTCAAG
Found at i:26608087 original size:22 final size:22
Alignment explanation
Indices: 26608059--26608103 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
26608049 CGTTGCAGAG
26608059 TATGAAGTATTCCAAGTAAAAA
1 TATGAAGTATTCCAAGTAAAAA
*
26608081 TATGAAGTATTCTAAGTAAAAA
1 TATGAAGTATTCCAAGTAAAAA
26608103 T
1 T
26608104 TGGGTGTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.49, C:0.07, G:0.13, T:0.31
Consensus pattern (22 bp):
TATGAAGTATTCCAAGTAAAAA
Found at i:26609340 original size:42 final size:42
Alignment explanation
Indices: 26609258--26609352 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
26609248 TTAAACCAAA
* *
26609258 AAATAATATTTAAATTATATCATATTTCTCAATTTAATACTT
1 AAATAGTATTTAAATTATATCATATTTCTCAATGTAATACTT
* *
26609300 AAATAGTATTTAAATTATAAT-ATGTTATCTCAA-GTGATACTT
1 AAATAGTATTTAAATTAT-ATCATATT-TCTCAATGTAATACTT
26609342 AAACT-GTATTT
1 AAA-TAGTATTT
26609353 TATTATTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
42 37 0.80
43 9 0.20
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.45
Consensus pattern (42 bp):
AAATAGTATTTAAATTATATCATATTTCTCAATGTAATACTT
Found at i:26609825 original size:26 final size:25
Alignment explanation
Indices: 26609786--26609841 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
26609776 AATTTAATTA
*
26609786 AATTTGATTTTTATAATTTAAATTTT
1 AATTTGATTCTTATAA-TTAAATTTT
* *
26609812 TATTTTATTCTTATAATTAAATTTT
1 AATTTGATTCTTATAATTAAATTTT
26609837 AATTT
1 AATTT
26609842 AAAAATATCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
AATTTGATTCTTATAATTAAATTTT
Found at i:26609896 original size:39 final size:39
Alignment explanation
Indices: 26609852--26609931 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
26609842 AAAAATATCA
*
26609852 CATATTAAAAAATGATTGGTTAAATGATTTTTTTAACTG
1 CATATTAAAAAATGATTGGTTAAATAATTTTTTTAACTG
* *
26609891 CATATTACAAAATGATTTGTTAAATAATTTTTTTAACTG
1 CATATTAAAAAATGATTGGTTAAATAATTTTTTTAACTG
26609930 CA
1 CA
26609932 AAGATAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (39 bp):
CATATTAAAAAATGATTGGTTAAATAATTTTTTTAACTG
Found at i:26611256 original size:26 final size:24
Alignment explanation
Indices: 26611217--26611266 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
26611207 AAATAAAAAA
* *
26611217 ATTTTAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
26611243 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
26611267 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:26618117 original size:21 final size:21
Alignment explanation
Indices: 26618091--26618134 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
26618081 TATTCTCTTT
26618091 CTACCAATCATGACAAGCTTC
1 CTACCAATCATGACAAGCTTC
26618112 CTACCAATCATGACAAGCTTC
1 CTACCAATCATGACAAGCTTC
26618133 CT
1 CT
26618135 CTATTCTCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.34, G:0.09, T:0.25
Consensus pattern (21 bp):
CTACCAATCATGACAAGCTTC
Found at i:26628859 original size:46 final size:46
Alignment explanation
Indices: 26628712--26629022 Score: 206
Period size: 46 Copynumber: 6.6 Consensus size: 46
26628702 TTTGTGCGCT
* *
26628712 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * * * *
26628758 AGTATAAGACCATGTTTGGGACATGGCATCAGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
26628806 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* **
26628852 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGAT--GTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* * * ** * * *
26628896 AGTGTATGACCATGTCTGGGACATGGCGTCCGCCTCGATTTCAATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-GAGAGCC
* * *
26628945 AGTGTAAGACCATGTTTGGGACATGGCATC-GACT--TGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-GA-GAGCC
* *
26628992 AGTGTAAGACCATGTCTAGGACGTGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
26629023 ACATTATACC
Statistics
Matches: 208, Mismatches: 43, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
44 9 0.04
45 16 0.08
46 69 0.33
47 59 0.28
48 25 0.12
49 30 0.14
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:26632860 original size:27 final size:27
Alignment explanation
Indices: 26632830--26633007 Score: 155
Period size: 27 Copynumber: 6.6 Consensus size: 27
26632820 TTATTGAGCC
* *
26632830 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26632857 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
26632884 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCTACATAAT-CAACT
** ** *
26632912 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
26632939 CGCACACTTAGTGC-ATCAT-ATCCATTT
1 CGCACACTTAGTGCTA-CATAAT-CAACT
* *
26632966 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
26632993 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26633008 GTACAATTTA
Statistics
Matches: 126, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 26 0.21
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26632996 original size:54 final size:53
Alignment explanation
Indices: 26632855--26633006 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 53
26632845 ATATAATCAA
* * *
26632855 CTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCAT
1 CTCGCACACTTAGTGCAACATAGTC-AATCGCACACTTAGTG-CACATAGTCCAT
** *
26632910 CTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATA-TCCAT
1 CTCGCACACTTAGTGCAACATAGTCAA-TCGCACACTTAGTGCA-CATAGTCCAT
*
26632964 TTCGCACACTTAGTGCAACATAGTCGAATCGCACACTTAGTGC
1 CTCGCACACTTAGTGCAACATAGTC-AATCGCACACTTAGTGC
26633007 TGTACAATTT
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
54 45 0.53
55 40 0.47
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (53 bp):
CTCGCACACTTAGTGCAACATAGTCAATCGCACACTTAGTGCACATAGTCCAT
Found at i:26636877 original size:5 final size:5
Alignment explanation
Indices: 26636863--26636905 Score: 79
Period size: 5 Copynumber: 8.8 Consensus size: 5
26636853 AATGTTTAAG
26636863 TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
26636906 AAAAGAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.11
5 34 0.89
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:26637882 original size:40 final size:40
Alignment explanation
Indices: 26637757--26637899 Score: 123
Period size: 40 Copynumber: 3.6 Consensus size: 40
26637747 GACATCAAGT
* * *
26637757 CGATGAGACACTAGGTTTCAATTTTATTACTTC-ATATTAATT
1 CGATGAGACACTAGGTGTCAAATTT-TTACTTCGA-ATT-ATC
* * * ** *
26637799 CGATGAGGCATTGGGTGTC-AA--TTTACTTCGGTTTAGC
1 CGATGAGACACTAGGTGTCAAATTTTTACTTCGAATTATC
*
26637836 CGATGAGACATTAGGTGTCAAATTTTTACTTCGAATTATC
1 CGATGAGACACTAGGTGTCAAATTTTTACTTCGAATTATC
* *
26637876 CAATGAGACACTAGGTGCCAAATT
1 CGATGAGACACTAGGTGTCAAATT
26637900 GGTATGTTTT
Statistics
Matches: 80, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
37 18 0.22
38 11 0.14
39 1 0.01
40 34 0.43
41 1 0.01
42 15 0.19
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (40 bp):
CGATGAGACACTAGGTGTCAAATTTTTACTTCGAATTATC
Found at i:26642121 original size:25 final size:25
Alignment explanation
Indices: 26642088--26642140 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
26642078 ATTCTATTCA
26642088 AACTCTATTTTACATCAATAAAATT
1 AACTCTATTTTACATCAATAAAATT
26642113 AACTCTATTTTACATCAATAAAATT
1 AACTCTATTTTACATCAATAAAATT
26642138 AAC
1 AAC
26642141 ACAATTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (25 bp):
AACTCTATTTTACATCAATAAAATT
Found at i:26642147 original size:25 final size:25
Alignment explanation
Indices: 26642094--26642147 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
26642084 TTCAAACTCT
* *
26642094 ATTTTACATCAATAAAATTAACTCT
1 ATTTTACATCAATAAAATTAACACA
26642119 ATTTTACATCAATAAAATTAACACA
1 ATTTTACATCAATAAAATTAACACA
26642144 ATTT
1 ATTT
26642148 AAAAAGATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (25 bp):
ATTTTACATCAATAAAATTAACACA
Found at i:26642882 original size:15 final size:16
Alignment explanation
Indices: 26642864--26642893 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26642854 TAAAAATCAA
26642864 ATAAAA-TTACATTAT
1 ATAAAAGTTACATTAT
26642879 ATAAAAGTTACATTA
1 ATAAAAGTTACATTA
26642894 AAAAAATCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (16 bp):
ATAAAAGTTACATTAT
Found at i:26643312 original size:60 final size:60
Alignment explanation
Indices: 26643248--26643366 Score: 195
Period size: 60 Copynumber: 2.0 Consensus size: 60
26643238 ATACTAAACT
* *
26643248 AAACACAACAATTTATAACATAA-TCTTAAATTAGTAATAAATTAATTTTAAAATAATTAC
1 AAACACAACAATTTATAACATAATTC-TAAATTACTAACAAATTAATTTTAAAATAATTAC
*
26643308 AAACACAACAATTTATAACGTAATTCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACACAACAATTTATAACATAATTCTAAATTACTAACAAATTAATTTTAAAATAATTA
26643367 TAAAAAATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
60 53 0.96
61 2 0.04
ACGTcount: A:0.53, C:0.11, G:0.02, T:0.34
Consensus pattern (60 bp):
AAACACAACAATTTATAACATAATTCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:26643448 original size:27 final size:27
Alignment explanation
Indices: 26643387--26643451 Score: 80
Period size: 25 Copynumber: 2.4 Consensus size: 27
26643377 TTTTATATTT
26643387 TTAATAAAAATAAAATAATAATATTTTA
1 TTAA-AAAAATAAAATAATAATATTTTA
*
26643415 TTTAAAAAATAAAA-AA-AATATTTTA
1 TTAAAAAAATAAAATAATAATATTTTA
*
26643440 ATATAAAAAATA
1 TTA-AAAAAATA
26643452 TATTACGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 10 0.30
26 10 0.30
27 10 0.30
28 3 0.09
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (27 bp):
TTAAAAAAATAAAATAATAATATTTTA
Found at i:26644011 original size:31 final size:31
Alignment explanation
Indices: 26643973--26644031 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
26643963 GCAAGCCTTC
26643973 AAGAAACACAATAGCACTTGAAATATGCTTA
1 AAGAAACACAATAGCACTTGAAATATGCTTA
26644004 AAGAAACACAATAGCACTTGAAATATGC
1 AAGAAACACAATAGCACTTGAAATATGC
26644032 ATTTGGTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.20
Consensus pattern (31 bp):
AAGAAACACAATAGCACTTGAAATATGCTTA
Found at i:26647752 original size:11 final size:11
Alignment explanation
Indices: 26647721--26647811 Score: 51
Period size: 11 Copynumber: 7.9 Consensus size: 11
26647711 CAAATGTCTC
*
26647721 TAAAATAGTAA
1 TAAAATAATAA
*
26647732 CAAAATTAATAA
1 TAAAA-TAATAA
26647744 TAAAATAATAA
1 TAAAATAATAA
* *
26647755 -ATATATAATAT
1 TA-AAATAATAA
*
26647766 TCAAATAATAA
1 TAAAATAATAA
*
26647777 CAACAA-AATAA
1 TAA-AATAATAA
*
26647788 TAGTAATATAATAG
1 TA--AA-ATAATAA
26647802 TAAAATAATA
1 TAAAATAATA
26647812 GCAAAACAAT
Statistics
Matches: 60, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
10 1 0.02
11 37 0.62
12 14 0.23
13 2 0.03
14 6 0.10
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.29
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:26647812 original size:11 final size:11
Alignment explanation
Indices: 26647781--26647817 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
26647771 TAATAACAAC
26647781 AAAATAATAGT
1 AAAATAATAGT
*
26647792 AATATAATAGT
1 AAAATAATAGT
*
26647803 AAAATAATAGC
1 AAAATAATAGT
26647814 AAAA
1 AAAA
26647818 CAATGAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.65, C:0.03, G:0.08, T:0.24
Consensus pattern (11 bp):
AAAATAATAGT
Found at i:26649980 original size:11 final size:11
Alignment explanation
Indices: 26649964--26649988 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26649954 TGTATTTGTA
26649964 TTTTTTAATAT
1 TTTTTTAATAT
26649975 TTTTTTAATAT
1 TTTTTTAATAT
26649986 TTT
1 TTT
26649989 ACTATACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTTTAATAT
Found at i:26650701 original size:133 final size:133
Alignment explanation
Indices: 26650551--26650792 Score: 448
Period size: 133 Copynumber: 1.8 Consensus size: 133
26650541 TATCAATACA
26650551 CCCTCAAGCTTCACTACATTGGGATGATCCAACTTCAGTAATATCATTATTTATTGTGCCATAAA
1 CCCTCAAGCTTCACTACATTGGGATGATCCAACTTCAGTAATATCATTATTTATTGTGCCATAAA
* *
26650616 TTTCACTCTCCCTGGATCTGATATTTCAAACCGGAACTTCTTCACTTTTGTGCTCCATTATCTGT
66 TTTCACACTCCCAGGATCTGATATTTCAAACCGGAACTTCTTCACTTTTGTGCTCCATTATCTGT
26650681 AGT
131 AGT
*
26650684 CCCTCAAGCTTCACTACATTGGGATGATCCAACTTCTGTAATATCATTATTTATTGTGCCATAAA
1 CCCTCAAGCTTCACTACATTGGGATGATCCAACTTCAGTAATATCATTATTTATTGTGCCATAAA
*
26650749 TTTCACACTCCCAGGATCTGATATTTCAAACCGGACCTTCTTCA
66 TTTCACACTCCCAGGATCTGATATTTCAAACCGGAACTTCTTCA
26650793 AGTCAACTAT
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
133 105 1.00
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (133 bp):
CCCTCAAGCTTCACTACATTGGGATGATCCAACTTCAGTAATATCATTATTTATTGTGCCATAAA
TTTCACACTCCCAGGATCTGATATTTCAAACCGGAACTTCTTCACTTTTGTGCTCCATTATCTGT
AGT
Found at i:26654293 original size:16 final size:15
Alignment explanation
Indices: 26654261--26654289 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26654251 ATGTATATAT
26654261 TTTTTTAAATATTTA
1 TTTTTTAAATATTTA
26654276 TTTTTTAAATATTT
1 TTTTTTAAATATTT
26654290 TATTGAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAAATATTTA
Found at i:26655621 original size:25 final size:25
Alignment explanation
Indices: 26655575--26655623 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
26655565 CCAAATAAAA
*
26655575 TTTTTATAATAAATAACTTAAAATAT
1 TTTTTATAAAAAATAAC-TAAAATAT
26655601 TTTTTATAAAAAATGAA-TAAAAT
1 TTTTTATAAAAAAT-AACTAAAAT
26655624 TAGAACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 6 0.29
26 13 0.62
27 2 0.10
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (25 bp):
TTTTTATAAAAAATAACTAAAATAT
Found at i:26656271 original size:15 final size:16
Alignment explanation
Indices: 26656245--26656277 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
26656235 AAATTCTTTG
*
26656245 TTTAATTTTTTTTGAA
1 TTTAATTTTTTTTAAA
26656261 TTTAA-TTTTTTTAAA
1 TTTAATTTTTTTTAAA
26656276 TT
1 TT
26656278 AAAAAAATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTAATTTTTTTTAAA
Found at i:26656438 original size:48 final size:48
Alignment explanation
Indices: 26656374--26656507 Score: 143
Period size: 48 Copynumber: 2.8 Consensus size: 48
26656364 AGTGATAATT
26656374 TTAAATTTTCAATACTATTCGATATTATT-TTAATTTATGCAAATT-TAA
1 TTAAATTTTCAATACTATTCGATATT-TTATTAATTTATGC-AATTATAA
* *
26656422 TTAAATTTGT-AATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAATTT-TCAATACTATTCGATATTTTATTAATTTATGCAATTATAA
* * * *
26656470 TTACAA-TTTCAATACTGTTTGAT-TTTTTTTCATTTATG
1 TTA-AATTTTCAATACTATTCGATATTTTATTAATTTATG
26656508 ATGTTTGCAT
Statistics
Matches: 77, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
47 21 0.27
48 53 0.69
49 3 0.04
ACGTcount: A:0.33, C:0.08, G:0.06, T:0.53
Consensus pattern (48 bp):
TTAAATTTTCAATACTATTCGATATTTTATTAATTTATGCAATTATAA
Found at i:26658119 original size:18 final size:18
Alignment explanation
Indices: 26658096--26658138 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
26658086 TGTCAGGTGC
*
26658096 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
26658114 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
26658132 GTTTCCT
1 GTATCCT
26658139 TTTCCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:26661841 original size:126 final size:126
Alignment explanation
Indices: 26661616--26661870 Score: 422
Period size: 126 Copynumber: 2.0 Consensus size: 126
26661606 TTATAGCCTC
* *
26661616 ATTTTTCTATAAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGTTG
1 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTCCAGAAATTTTGTTG
* * *
26661681 ACAGTGTATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAATGTCTACTCAGGATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
*
26661742 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTCCAGAAATTTTGTTG
1 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTCCAGAAATTTTGTTG
* *
26661807 ACAGTGCATCCTGTTTGAAGCGTTTTC-AGCACTATTTGTTCAGAAATGTCTGCTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGA-CACTATTTGTTCAGAAATGTCTACTCAGAATT
26661868 ATT
1 ATT
26661871 CTTGCAGAAA
Statistics
Matches: 120, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
125 1 0.01
126 119 0.99
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTCCAGAAATTTTGTTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
Found at i:26662343 original size:15 final size:15
Alignment explanation
Indices: 26662323--26662352 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26662313 TTAATTATTT
*
26662323 TCCTAAAACCCTAAA
1 TCCTAAAACACTAAA
26662338 TCCTAAAACACTAAA
1 TCCTAAAACACTAAA
26662353 CCCTTACAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (15 bp):
TCCTAAAACACTAAA
Found at i:26668357 original size:9 final size:9
Alignment explanation
Indices: 26668345--26668387 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
26668335 AAATATTATT
26668345 TTTTATAAA
1 TTTTATAAA
*
26668354 TTTTATAGA
1 TTTTATAAA
*
26668363 TTTTAAATAA
1 TTTTATA-AA
26668373 TTTTAATAAA
1 TTTT-ATAAA
26668383 TTTTA
1 TTTTA
26668388 ATTTTTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 15 0.54
10 11 0.39
11 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (9 bp):
TTTTATAAA
Found at i:26668372 original size:20 final size:20
Alignment explanation
Indices: 26668352--26668388 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26668342 ATTTTTTATA
*
26668352 AATTTT-ATAGATTTTAAAT
1 AATTTTAATAAATTTTAAAT
26668371 AATTTTAATAAATTTTAA
1 AATTTTAATAAATTTTAA
26668389 TTTTTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
AATTTTAATAAATTTTAAAT
Found at i:26668389 original size:10 final size:10
Alignment explanation
Indices: 26668344--26668389 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
26668334 AAAATATTAT
*
26668344 TTTTTATAAA
1 TTTTAATAAA
*
26668354 TTTT-ATAGA
1 TTTTAATAAA
26668363 TTTTAA-ATAA
1 TTTTAATA-AA
26668373 TTTTAATAAA
1 TTTTAATAAA
26668383 TTTTAAT
1 TTTTAAT
26668390 TTTTAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
9 9 0.29
10 21 0.68
11 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (10 bp):
TTTTAATAAA
Found at i:26668410 original size:29 final size:28
Alignment explanation
Indices: 26668322--26668415 Score: 84
Period size: 29 Copynumber: 3.1 Consensus size: 28
26668312 TAGCTAATTC
26668322 TTTTAAATTTTAAAAATATTATTTTTTATAAA
1 TTTTAAATTTTAAAAATA--A--TTTTATAAA
26668354 TTTTATAGATTTT--AAATAATTTTAATAAA
1 TTTTA-A-ATTTTAAAAATAATTTT-ATAAA
* *
26668383 TTTTAATTTTTAAAAATAATTCTTATAAT
1 TTTTAAATTTTAAAAATAATT-TTATAAA
26668412 TTTT
1 TTTT
26668416 TTGAAAATTT
Statistics
Matches: 54, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
27 4 0.07
28 5 0.09
29 26 0.48
30 3 0.06
32 10 0.19
33 1 0.02
34 5 0.09
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (28 bp):
TTTTAAATTTTAAAAATAATTTTATAAA
Found at i:26669061 original size:21 final size:21
Alignment explanation
Indices: 26669035--26669076 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
26669025 AAGAACAGCG
26669035 AATTATGAATTATTTAAATAT
1 AATTATGAATTATTTAAATAT
26669056 AATTATGAATTATTTAAATAT
1 AATTATGAATTATTTAAATAT
26669077 TCTTTGTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (21 bp):
AATTATGAATTATTTAAATAT
Found at i:26669332 original size:21 final size:21
Alignment explanation
Indices: 26669306--26669348 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
26669296 TATAATTATG
26669306 TAATCAG-TTACCATCCATACC
1 TAATCAGATT-CCATCCATACC
26669327 TAATCAGATTCCATCCATACC
1 TAATCAGATTCCATCCATACC
26669348 T
1 T
26669349 TTTATTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.30
Consensus pattern (21 bp):
TAATCAGATTCCATCCATACC
Found at i:26674711 original size:25 final size:25
Alignment explanation
Indices: 26674677--26674728 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
26674667 GAAGCTTGAA
*
26674677 TTTTTTTTTTTGAAAGTTTAGAAAC
1 TTTTTTTTTTTGAAAATTTAGAAAC
26674702 TTTTTTTTTTTGAAAATTTAGAAAC
1 TTTTTTTTTTTGAAAATTTAGAAAC
26674727 TT
1 TT
26674729 ACTCTCTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.04, G:0.10, T:0.58
Consensus pattern (25 bp):
TTTTTTTTTTTGAAAATTTAGAAAC
Found at i:26676940 original size:25 final size:25
Alignment explanation
Indices: 26676833--26676945 Score: 79
Period size: 25 Copynumber: 4.5 Consensus size: 25
26676823 AAGAGCTGTA
* *
26676833 ATCGGGAAGTTCAAGAGAGCCA-AT
1 ATCGGGAAGCTCCAGAGAGCCATAT
* * *
26676857 ATTGGGAAACTCCAGAGAGCCATTT
1 ATCGGGAAGCTCCAGAGAGCCATAT
* *
26676882 ATCGGGGAGCT-CATGAAAGAGCC-TTT
1 ATCGGGAAGCTCCA-G--AGAGCCATAT
* *
26676908 AATTGGGAAGCTCCAGGGAGCCATAT
1 -ATCGGGAAGCTCCAGAGAGCCATAT
*
26676934 ATCGGGATGCTC
1 ATCGGGAAGCTC
26676946 ATAAGAGCTA
Statistics
Matches: 68, Mismatches: 14, Indels: 13
0.72 0.15 0.14
Matches are distributed among these distances:
24 20 0.29
25 25 0.37
26 5 0.07
27 16 0.24
28 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.21
Consensus pattern (25 bp):
ATCGGGAAGCTCCAGAGAGCCATAT
Found at i:26678859 original size:14 final size:17
Alignment explanation
Indices: 26678827--26678864 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
26678817 GATTATAAAG
26678827 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
26678844 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
26678858 TATATTA
1 TATATTA
26678865 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:26679969 original size:22 final size:22
Alignment explanation
Indices: 26679928--26679969 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26679918 ATATTTGAGT
*
26679928 ATTGGTATTGAATTTAAATTGA
1 ATTGGTATTGAATTCAAATTGA
* *
26679950 ATTGGTATTTAATTCGAATT
1 ATTGGTATTGAATTCAAATT
26679970 TTAATTATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (22 bp):
ATTGGTATTGAATTCAAATTGA
Found at i:26681725 original size:85 final size:84
Alignment explanation
Indices: 26681556--26681783 Score: 307
Period size: 85 Copynumber: 2.7 Consensus size: 84
26681546 TTGGTATTTG
* * ** *
26681556 AACTTTCAAAATACATAAAAAAAAGGCCTTCAAACTTTTT-AAAAAATAATAATAAAGCCCTTTT
1 AACTTTCAAAATACAT--CAAAAAGGCCCTCAAACTTTTTCAAAAAA-AGCAATTAAGCCCTTTT
26681620 TTTACACTCAATTGAGTACTTA
63 TTTACACTCAATTGAGTACTTA
*
26681642 AACTTTCAAAATACATCAAAAAGGCCCTCAAACTTTTTCAAAAAAAGCAATTAAGCTCTTTTTTT
1 AACTTTCAAAATACATCAAAAAGGCCCTCAAACTTTTTCAAAAAAAGCAATTAAGC-CCTTTTTT
*
26681707 TTCACTCAATTG-GATACTTA
65 TACACTCAATTGAG-TACTTA
* * *
26681727 AACTTTCAAAATGCATCAAAAAGGCCCTTAAACTTTTCCAAAAAAAGCAATTAAGCC
1 AACTTTCAAAATACATCAAAAAGGCCCTCAAACTTTTTCAAAAAAAGCAATTAAGCC
26681784 ATTGATTTTT
Statistics
Matches: 129, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
84 30 0.23
85 83 0.64
86 16 0.12
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (84 bp):
AACTTTCAAAATACATCAAAAAGGCCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTTTTTT
ACACTCAATTGAGTACTTA
Found at i:26681999 original size:19 final size:20
Alignment explanation
Indices: 26681975--26682014 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
26681965 AATAAAAGTT
26681975 ATAG-AAAAATTAAATTTTA
1 ATAGAAAAAATTAAATTTTA
26681994 ATAGAAAAAAATTAAATTTTA
1 ATAG-AAAAAATTAAATTTTA
26682015 TTAAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
21 15 0.79
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (20 bp):
ATAGAAAAAATTAAATTTTA
Found at i:26682316 original size:10 final size:9
Alignment explanation
Indices: 26682291--26682479 Score: 58
Period size: 9 Copynumber: 19.9 Consensus size: 9
26682281 TCATAATTTC
*
26682291 TTTTTTACA
1 TTTTTTATA
*
26682300 ATTTTTATA
1 TTTTTTATA
*
26682309 TTTCTTTACA
1 TTT-TTTATA
26682319 TTTTTTATA
1 TTTTTTATA
*
26682328 TTTTTTACGA
1 TTTTTTA-TA
* *
26682338 TTTTATAAA
1 TTTTTTATA
* *
26682347 ATTTATA-A
1 TTTTTTATA
*
26682355 TTTTTTTCTA
1 -TTTTTTATA
*
26682365 TATTTCTATA
1 T-TTTTTATA
*
26682375 TATTTTATAA
1 TTTTTTAT-A
*
26682385 TTTTTTTACGA
1 -TTTTTTA-TA
*
26682396 TTTTTATAAAA
1 TTTTT-T-ATA
* ** *
26682407 TATTACAAA
1 TTTTTTATA
26682416 TTTTTTATAA
1 TTTTTTAT-A
26682426 TTTTTTATGA
1 TTTTTTAT-A
* *
26682436 TTTTATAAA
1 TTTTTTATA
26682445 TTTTTTATA
1 TTTTTTATA
*
26682454 ATTTTTA-A
1 TTTTTTATA
*
26682462 TATTGTTATA
1 T-TTTTTATA
*
26682472 GTTTTTAT
1 TTTTTTAT
26682480 TAAAATTTAA
Statistics
Matches: 131, Mismatches: 36, Indels: 26
0.68 0.19 0.13
Matches are distributed among these distances:
8 2 0.02
9 70 0.53
10 46 0.35
11 12 0.09
12 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTTTATA
Found at i:26682323 original size:18 final size:18
Alignment explanation
Indices: 26682291--26682341 Score: 75
Period size: 19 Copynumber: 2.8 Consensus size: 18
26682281 TCATAATTTC
26682291 TTTTTTACAATTTTTATA
1 TTTTTTACAATTTTTATA
*
26682309 TTTCTTTACATTTTTTATA
1 TTT-TTTACAATTTTTATA
*
26682328 TTTTTTACGATTTT
1 TTTTTTACAATTTT
26682342 ATAAAATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 12 0.41
19 17 0.59
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTTTTACAATTTTTATA
Found at i:26682369 original size:58 final size:58
Alignment explanation
Indices: 26682301--26682460 Score: 166
Period size: 59 Copynumber: 2.7 Consensus size: 58
26682291 TTTTTTACAA
* * *
26682301 TTTTTATATTTCTTTACATTTTTTATATTTTTTACGA-TTTTATAAAAT-TTATAATTT
1 TTTTTATATTTCTTTACATTTTATA-ATTTTTTACGATTTTTATAAAATATTACAAATT
* *
26682358 TTTTCTATATTTCTATATATTTTATAATTTTTTTACGATTTTTATAAAATATTACAAA-T
1 TTTT-TATATTTCTTTACATTTTATAA-TTTTTTACGATTTTTATAAAATATTACAAATT
* **
26682417 TTTTTATAATTT-TTTATGATTTTATAAATTTTTTATAATTTTTA
1 TTTTTAT-ATTTCTTTA-CATTTTAT-AATTTTTTACGATTTTTA
26682461 ATATTGTTAT
Statistics
Matches: 87, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
57 5 0.06
58 34 0.39
59 41 0.47
60 7 0.08
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (58 bp):
TTTTTATATTTCTTTACATTTTATAATTTTTTACGATTTTTATAAAATATTACAAATT
Found at i:26682402 original size:20 final size:19
Alignment explanation
Indices: 26682377--26682451 Score: 62
Period size: 19 Copynumber: 3.8 Consensus size: 19
26682367 TTTCTATATA
26682377 TTTTATAATTTTTTTACGAT
1 TTTTATAA-TTTTTTACGAT
** * *
26682397 TTTTATAAAATATTACAAATT
1 TTTTATAATTTTTTAC-GA-T
*
26682418 TTTTATAATTTTTTATGA-
1 TTTTATAATTTTTTACGAT
26682436 TTTTATAAATTTTTTA
1 TTTTAT-AATTTTTTA
26682452 TAATTTTTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
18 6 0.14
19 14 0.33
20 10 0.23
21 13 0.30
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (19 bp):
TTTTATAATTTTTTACGAT
Found at i:26682420 original size:30 final size:28
Alignment explanation
Indices: 26682327--26682422 Score: 86
Period size: 30 Copynumber: 3.3 Consensus size: 28
26682317 CATTTTTTAT
*
26682327 ATTTTTTACGA-TTTTATAAAATTTATA
1 ATTTTTTACGATTTTTATAAAATTTAAA
* * * *
26682354 ATTTTTTTCTATATTTCTATATATTTTATAA
1 ATTTTTTACGAT-TTT-TATAAAATTTA-AA
*
26682385 TTTTTTTACGATTTTTATAAAATATTACAA
1 ATTTTTTACGATTTTTATAAAAT-TTA-AA
26682415 ATTTTTTA
1 ATTTTTTA
26682423 TAATTTTTTA
Statistics
Matches: 52, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
27 9 0.17
29 9 0.17
30 24 0.46
31 10 0.19
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.59
Consensus pattern (28 bp):
ATTTTTTACGATTTTTATAAAATTTAAA
Found at i:26682446 original size:19 final size:18
Alignment explanation
Indices: 26682418--26682476 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
26682408 ATTACAAATT
*
26682418 TTTTATAATTTTTTATGA
1 TTTTATAATTTTTTATAA
26682436 TTTTATAAATTTTTTATAA
1 TTTTAT-AATTTTTTATAA
* *
26682455 TTTT-TAATATTGTTATAG
1 TTTTATAAT-TTTTTATAA
26682473 TTTT
1 TTTT
26682477 TATTAAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 3 0.08
18 18 0.50
19 15 0.42
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTTATAATTTTTTATAA
Found at i:26682477 original size:29 final size:29
Alignment explanation
Indices: 26682348--26682471 Score: 99
Period size: 29 Copynumber: 4.2 Consensus size: 29
26682338 TTTTATAAAA
* * *
26682348 TTTATAATTTTTTTCTATATTTCTATAT-AT
1 TTTATAAATTTTTTATA-ATTTTTA-ATGAT
* ** **
26682378 TTTATAATTTTTTTACGATTTTTATAAAAT
1 TTTATAAATTTTTTATAATTTTTA-ATGAT
* * *
26682408 ATTACAAATTTTTTATAATTTTTTATGAT
1 TTTATAAATTTTTTATAATTTTTAATGAT
26682437 TTTATAAATTTTTTATAATTTTTAAT-AT
1 TTTATAAATTTTTTATAATTTTTAATGAT
26682465 TGTTATA
1 T-TTATA
26682472 GTTTTTATTA
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
28 3 0.04
29 39 0.51
30 34 0.45
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.62
Consensus pattern (29 bp):
TTTATAAATTTTTTATAATTTTTAATGAT
Found at i:26682517 original size:29 final size:28
Alignment explanation
Indices: 26682436--26682517 Score: 67
Period size: 29 Copynumber: 2.9 Consensus size: 28
26682426 TTTTTTATGA
26682436 TTTTATAAATTTT-TTATAATTTTTAATAT
1 TTTTATAAATTTTATT-T-ATTTTTAATAT
* ** * **
26682465 TGTTATAGTTTTTATTAAAATTTAATCAT
1 TTTTATAAATTTTATTTATTTTTAAT-AT
*
26682494 TTTTATAACTTTTATTTATTTTTA
1 TTTTATAAATTTTATTTATTTTTA
26682518 TTTTTATCAT
Statistics
Matches: 39, Mismatches: 12, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
28 7 0.18
29 30 0.77
30 2 0.05
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (28 bp):
TTTTATAAATTTTATTTATTTTTAATAT
Found at i:26693168 original size:39 final size:39
Alignment explanation
Indices: 26693111--26693193 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
26693101 GCTGAAGAAG
*
26693111 AAACTCAATCATCCAATCAGTTCATCATTCTAATGAAAT
1 AAACTCAATCATCAAATCAGTTCATCATTCTAATGAAAT
*
26693150 AAACTGAATCATCAAATCAGTTCATCATTCTAATGAAAT
1 AAACTCAATCATCAAATCAGTTCATCATTCTAATGAAAT
26693189 AAACT
1 AAACT
26693194 AAGTTAAACT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.30
Consensus pattern (39 bp):
AAACTCAATCATCAAATCAGTTCATCATTCTAATGAAAT
Found at i:26701181 original size:25 final size:25
Alignment explanation
Indices: 26701147--26701197 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
26701137 TTCCTTATAA
**
26701147 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
26701172 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
26701197 A
1 A
26701198 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:26701196 original size:12 final size:12
Alignment explanation
Indices: 26701150--26701197 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
26701140 CTTATAAACT
26701150 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
26701162 TTCTATTAGGACT
1 TTAAATTAGGA-A
26701175 TTAAATTAGGAA
1 TTAAATTAGGAA
*
26701187 TTAGATTAGGA
1 TTAAATTAGGA
26701198 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:26705851 original size:25 final size:25
Alignment explanation
Indices: 26705802--26705852 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
26705792 TTCCTTATAA
** *
26705802 ACTTTAAATCAGGAATTCTATTAGG
1 ACTTTAAATCAGGAATTAGAATAGG
*
26705827 ACTTTAAATTAGGAATTAGAATAGG
1 ACTTTAAATCAGGAATTAGAATAGG
26705852 A
1 A
26705853 TTTTCCTTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (25 bp):
ACTTTAAATCAGGAATTAGAATAGG
Found at i:26708967 original size:40 final size:40
Alignment explanation
Indices: 26708916--26708996 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
26708906 TTATAAAGCC
26708916 AAAATTTTCATAGATTGTCCTCAACCTCTTCCAACCATAA
1 AAAATTTTCATAGATTGTCCTCAACCTCTTCCAACCATAA
26708956 AAAATTTTCATAGATTGTCCTCAACCTCTTCCAACCATAA
1 AAAATTTTCATAGATTGTCCTCAACCTCTTCCAACCATAA
26708996 A
1 A
26708997 GCCAATTCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.36, C:0.27, G:0.05, T:0.32
Consensus pattern (40 bp):
AAAATTTTCATAGATTGTCCTCAACCTCTTCCAACCATAA
Found at i:26727543 original size:19 final size:19
Alignment explanation
Indices: 26727519--26727558 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
26727509 TATGGAACAC
26727519 CTTCTTTATTCACCCTCCA
1 CTTCTTTATTCACCCTCCA
*
26727538 CTTCTTTATTCGCCCTCCA
1 CTTCTTTATTCACCCTCCA
26727557 CT
1 CT
26727559 CCAGGGGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.42, G:0.03, T:0.42
Consensus pattern (19 bp):
CTTCTTTATTCACCCTCCA
Found at i:26728204 original size:6 final size:6
Alignment explanation
Indices: 26728189--26728223 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
26728179 TGATCTCCCA
26728189 CCCC-T CCCCTT CCCCTT CCCCTT CCCCTT CCCCTT
1 CCCCTT CCCCTT CCCCTT CCCCTT CCCCTT CCCCTT
26728224 TTGTTTCTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.14
6 25 0.86
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (6 bp):
CCCCTT
Found at i:26729794 original size:26 final size:27
Alignment explanation
Indices: 26729731--26729800 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
26729721 AATTAATTTA
* *
26729731 TTTAAAAAATTTTAAAAATATTACATT
1 TTTATAAATTTTTAAAAATATTACATT
*
26729758 TTTATACATTTTTAATAAAT-TTA-ATT
1 TTTATAAATTTTTAA-AAATATTACATT
26729784 ATTT-TAAATTTTTAAAA
1 -TTTATAAATTTTTAAAA
26729801 TTAAAAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
25 2 0.05
26 13 0.35
27 18 0.49
28 4 0.11
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (27 bp):
TTTATAAATTTTTAAAAATATTACATT
Found at i:26730239 original size:30 final size:31
Alignment explanation
Indices: 26730183--26730261 Score: 133
Period size: 30 Copynumber: 2.6 Consensus size: 31
26730173 ATGTAATACC
26730183 AATAAAAATTAAATAATTTAGATAATTGAAA
1 AATAAAAATTAAATAATTTAGATAATTGAAA
26730214 AATAAAAATTAAATAATTT-GATAATTGAAA
1 AATAAAAATTAAATAATTTAGATAATTGAAA
* *
26730244 AATAAATATTAAAAAATT
1 AATAAAAATTAAATAATT
26730262 AATTATTGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 27 0.59
31 19 0.41
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (31 bp):
AATAAAAATTAAATAATTTAGATAATTGAAA
Found at i:26730922 original size:91 final size:89
Alignment explanation
Indices: 26730856--26731017 Score: 229
Period size: 89 Copynumber: 1.8 Consensus size: 89
26730846 GCTTCTATTT
* * * * *
26730856 TTTTTTTGCATTCATTTGGGTACTTGAATTTTCAAAATGTATCAAAAAGA-CCTTCAAA-TCTTT
1 TTTTTTTGCACTCAATTGAGTACTTGAACTTTCAAAAAGTATCAAAAAGATCC-TCAAACTCTTT
26730919 AAAAAAAATAAAAATTAAGCCCCTAC
65 AAAAAAAA-AAAAATTAAGCCCCTAC
* *
26730945 TTTTTTTGCACTCAATTGAGTACTTGAACTTTCAAAAAGTATCAAAAAGATCCTCAAACTTTTTC
1 TTTTTTTGCACTCAATTGAGTACTTGAACTTTCAAAAAGTATCAAAAAGATCCTCAAACTCTTTA
26731010 AAAAAAAA
66 AAAAAAAA
26731018 CTTAAACTCA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
89 51 0.80
90 13 0.20
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (89 bp):
TTTTTTTGCACTCAATTGAGTACTTGAACTTTCAAAAAGTATCAAAAAGATCCTCAAACTCTTTA
AAAAAAAAAAAATTAAGCCCCTAC
Done.