Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 78 of 318
Found at i:26731180 original size:29 final size:27
Alignment explanation
Indices: 26731166--26731218 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
26731156 TGTAAATTTT
26731166 TATAAAAATAGTAAAAAATTATAAAATA
1 TATAAAAATA-TAAAAAATTATAAAATA
*
26731194 TATAGAAATATAAAAAA-TATAAAAT
1 TATAAAAATATAAAAAATTATAAAAT
26731219 TCTATAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 8 0.33
27 7 0.29
28 9 0.38
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (27 bp):
TATAAAAATATAAAAAATTATAAAATA
Found at i:26731187 original size:19 final size:19
Alignment explanation
Indices: 26731119--26731191 Score: 58
Period size: 19 Copynumber: 3.7 Consensus size: 19
26731109 AAAATTTAGG
*
26731119 AAAAAAATATAAAAATCA-T
1 AAAAAATTATAAAAAT-AGT
* *
26731138 AAAAATTATATAAAAAATTGT
1 AAAAAAT-TAT-AAAAATAGT
***
26731159 AAATTTTTATAAAAATAGT
1 AAAAAATTATAAAAATAGT
26731178 AAAAAATTATAAAA
1 AAAAAATTATAAAA
26731192 TATATAGAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
19 24 0.57
20 6 0.14
21 12 0.29
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (19 bp):
AAAAAATTATAAAAATAGT
Found at i:26731207 original size:17 final size:16
Alignment explanation
Indices: 26731166--26731218 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
26731156 TGTAAATTTT
*
26731166 TATAAAAATAGTAAAAAA
1 TATAAAAA-A-TATAAAA
*
26731184 TTATAAAATATATAGAAA
1 -TATAAAAAATATA-AAA
26731202 TATAAAAAATATAAAA
1 TATAAAAAATATAAAA
26731218 T
1 T
26731219 TCTATAATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 4 0.13
17 15 0.50
18 4 0.13
19 7 0.23
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (16 bp):
TATAAAAAATATAAAA
Found at i:26731224 original size:19 final size:18
Alignment explanation
Indices: 26731129--26731225 Score: 56
Period size: 19 Copynumber: 5.1 Consensus size: 18
26731119 AAAAAAATAT
26731129 AAAAATCATAAAAATTATATA
1 AAAAAT-AT-AAAATT-TATA
* *
26731150 AAAAAT-TGTAAATTTTTA
1 AAAAATAT-AAAATTTATA
*
26731168 TAAAAATAGTAAAAAATTATA
1 -AAAAATA-T-AAAATTTATA
*
26731189 AAATATATAGAAA--TATA
1 AAAAATATA-AAATTTATA
26731206 AAAAATATAAAATTCTATA
1 AAAAATATAAAATT-TATA
26731225 A
1 A
26731226 TGTCGTAAGA
Statistics
Matches: 60, Mismatches: 9, Indels: 16
0.71 0.11 0.19
Matches are distributed among these distances:
16 3 0.05
17 12 0.20
18 4 0.07
19 21 0.35
20 6 0.10
21 14 0.23
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
AAAAATATAAAATTTATA
Found at i:26731435 original size:9 final size:9
Alignment explanation
Indices: 26731421--26731577 Score: 59
Period size: 9 Copynumber: 16.7 Consensus size: 9
26731411 GTCGTTAATT
*
26731421 TTTTTATGA
1 TTTTTATAA
26731430 TTTTTATAAA
1 TTTTTAT-AA
*
26731440 ATTTTATAA
1 TTTTTATAA
26731449 -TTTTATAAA
1 TTTTTAT-AA
*
26731458 TTTTTCATGA
1 TTTTT-ATAA
26731468 TTTTTATAAAA
1 TTTTTAT--AA
** *
26731479 AATTTCTAA
1 TTTTTATAA
26731488 TTTTTAATAA
1 TTTTT-ATAA
** *
26731498 AATTTA-AT
1 TTTTTATAA
26731506 TTTTTAT-A
1 TTTTTATAA
26731514 TTTTTATTAAA
1 TTTTTA-T-AA
* *
26731525 ATTTAATAA
1 TTTTTATAA
*
26731534 TTTTTCTAA
1 TTTTTATAA
** *
26731543 AATTTATTA
1 TTTTTATAA
26731552 TTTATTATAA
1 TTT-TTATAA
*
26731562 TTTTTTCTAA
1 -TTTTTATAA
26731572 TTTTTA
1 TTTTTA
26731578 ATAAGAGTAG
Statistics
Matches: 105, Mismatches: 30, Indels: 26
0.65 0.19 0.16
Matches are distributed among these distances:
8 17 0.16
9 39 0.37
10 34 0.32
11 15 0.14
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (9 bp):
TTTTTATAA
Found at i:26731446 original size:19 final size:19
Alignment explanation
Indices: 26731422--26731502 Score: 83
Period size: 20 Copynumber: 4.2 Consensus size: 19
26731412 TCGTTAATTT
26731422 TTTTATGATTTTTATAAAA
1 TTTTATGATTTTTATAAAA
* *
26731441 TTTTAT-AATTTTATAAAT
1 TTTTATGATTTTTATAAAA
26731459 TTTTCATGATTTTTATAAAAA
1 TTTT-ATGATTTTTAT-AAAA
* * *
26731480 ATTTCTAATTTTTAATAAAA
1 TTTTATGATTTTT-ATAAAA
26731500 TTT
1 TTT
26731503 AATTTTTTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
18 14 0.28
19 8 0.16
20 20 0.40
21 8 0.16
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTTATGATTTTTATAAAA
Found at i:26731462 original size:10 final size:10
Alignment explanation
Indices: 26731429--26731477 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
26731419 TTTTTTTATG
26731429 ATTTTTATAA
1 ATTTTTATAA
*
26731439 AATTTTAT-A
1 ATTTTTATAA
26731448 A-TTTTATAA
1 ATTTTTATAA
*
26731457 ATTTTTCAT-G
1 ATTTTT-ATAA
26731467 ATTTTTATAA
1 ATTTTTATAA
26731477 A
1 A
26731478 AAATTTCTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
8 6 0.19
9 6 0.19
10 18 0.56
11 2 0.06
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (10 bp):
ATTTTTATAA
Found at i:26731490 original size:20 final size:19
Alignment explanation
Indices: 26731429--26731577 Score: 79
Period size: 19 Copynumber: 7.4 Consensus size: 19
26731419 TTTTTTTATG
*
26731429 ATTTTTATAAAATTTTATA
1 ATTTTTATAAAATTTTCTA
* *
26731448 A-TTTTATAAATTTTTCATG
1 ATTTTTATAAAATTTTC-TA
*
26731467 ATTTTTATAAAAAATTTCTA
1 ATTTTTAT-AAAATTTTCTA
*
26731487 ATTTTTAATAAAATTTAATTTTTTA
1 ATTTTT-AT--AA---AATTTTCTA
**
26731512 TATTTTTATTAAAATTTAATA
1 -ATTTTTA-TAAAATTTTCTA
*
26731533 ATTTTTCTAAAATTTAT-T-
1 ATTTTTATAAAATTT-TCTA
**
26731551 ATTTATTATAATTTTTTCTA
1 ATTT-TTATAAAATTTTCTA
26731571 ATTTTTA
1 ATTTTTA
26731578 ATAAGAGTAG
Statistics
Matches: 101, Mismatches: 15, Indels: 28
0.70 0.10 0.19
Matches are distributed among these distances:
18 18 0.18
19 24 0.24
20 23 0.23
21 16 0.16
22 3 0.03
24 2 0.02
25 8 0.08
26 7 0.07
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.59
Consensus pattern (19 bp):
ATTTTTATAAAATTTTCTA
Found at i:26731535 original size:46 final size:46
Alignment explanation
Indices: 26731456--26731566 Score: 118
Period size: 47 Copynumber: 2.4 Consensus size: 46
26731446 TAATTTTATA
* * *
26731456 AATTTTTCATGATTTTTATAAAAAATTTCTAATTTTTAATAAAATTT
1 AATTTTTTATAATTTTTATAAAAAATTTATAATTTTT-ATAAAATTT
* *
26731503 AATTTTTTAT-ATTTTTAT-TAAAATTTAATAATTTTTCTAAAATTT
1 AATTTTTTATAATTTTTATAAAAAATTT-ATAATTTTTATAAAATTT
*
26731548 ATTATTTATTATAATTTTT
1 A--ATTTTTTATAATTTTT
26731567 TCTAATTTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
45 16 0.29
46 16 0.29
47 17 0.31
48 6 0.11
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.59
Consensus pattern (46 bp):
AATTTTTTATAATTTTTATAAAAAATTTATAATTTTTATAAAATTT
Found at i:26731675 original size:86 final size:87
Alignment explanation
Indices: 26731583--26731746 Score: 242
Period size: 87 Copynumber: 1.9 Consensus size: 87
26731573 TTTTAATAAG
* * * *
26731583 AGTAGGGGCTTAATTGC-TTTTTTGAAAAAATTTGAGGGTCTTTTTGATGTATTTTTA-AAGTTC
1 AGTAGGGGCTTAATTACTTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCA-TTTTAGAAGTTC
26731646 AAGTACTCAATTGAGTGAAAAAA
65 AAGTACTCAATTGAGTGAAAAAA
* * *
26731669 AGTAGGGGCTTAATTACTTTTTTTGAAGAAGTTTAAGGGCCTTTTTTATGCATTTTAGAAGTTCA
1 AGTAGGGGCTTAATTACTTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTAGAAGTTCA
26731734 AGTACTCAATTGA
66 AGTACTCAATTGA
26731747 ATTTAAAAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
86 21 0.30
87 48 0.70
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (87 bp):
AGTAGGGGCTTAATTACTTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTAGAAGTTCA
AGTACTCAATTGAGTGAAAAAA
Found at i:26731755 original size:87 final size:86
Alignment explanation
Indices: 26731574--26731756 Score: 233
Period size: 87 Copynumber: 2.1 Consensus size: 86
26731564 TTTTCTAATT
* * * * *
26731574 TTTAATAAGAGTAGGGGCTTAATTGCTTTTTTGAAAAAATTTGAGGGTCTTTTTGATGTATTTTT
1 TTTAA-AAAAGTAGGGGCTTAATTACTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTT
*
26731639 AAAGTTCAAGTACTCAATTGAG
65 AAAGTTCAAGTACTCAATTGAA
** * * *
26731661 TGAAAAAAAGTAGGGGCTTAATTACTTTTTTTGAAGAAGTTTAAGGGCCTTTTTTATGCA-TTTT
1 TTTAAAAAAGTAGGGGCTTAATTAC-TTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTT
26731725 AGAAGTTCAAGTACTCAATTGAA
65 A-AAGTTCAAGTACTCAATTGAA
26731748 TTTAAAAAA
1 TTTAAAAAA
26731757 AAGAAGAGGG
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 23 0.28
87 58 0.72
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (86 bp):
TTTAAAAAAGTAGGGGCTTAATTACTTTTTTGAAAAAATTTAAGGGCCTTTTTGATGCATTTTTA
AAGTTCAAGTACTCAATTGAA
Found at i:26735642 original size:31 final size:31
Alignment explanation
Indices: 26735580--26735644 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
26735570 ACAAAAATAC
* *
26735580 TAAAAATATTAAAATAAATATTTTTAATAAA
1 TAAAAAAATTAAAATAAATATTTATAATAAA
* *
26735611 TAAAAAAATTTAAA-AAATATTTATACTTAAA
1 TAAAAAAATTAAAATAAATATTTATA-ATAAA
26735642 TAA
1 TAA
26735645 CATTAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 10 0.34
31 19 0.66
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (31 bp):
TAAAAAAATTAAAATAAATATTTATAATAAA
Found at i:26740215 original size:24 final size:24
Alignment explanation
Indices: 26740188--26740235 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26740178 AAAAGAGAAA
26740188 AAAAAGTCTGAGAAATTTTAGAGT
1 AAAAAGTCTGAGAAATTTTAGAGT
26740212 AAAAAGTCTGAGAAATTTTAGAGT
1 AAAAAGTCTGAGAAATTTTAGAGT
26740236 GAACCTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAAGTCTGAGAAATTTTAGAGT
Found at i:26746681 original size:203 final size:203
Alignment explanation
Indices: 26746332--26746741 Score: 786
Period size: 203 Copynumber: 2.0 Consensus size: 203
26746322 TGATGTTTGG
26746332 TTTGATCTCTAAGCCCTGGATATTGTAACATGATGATGTTTCTTCGTATGAGTTGCACATCTTAC
1 TTTGATCTCTAAGCCCTGGATATTGTAACATGATGATGTTTCTTCGTATGAGTTGCACATCTTAC
*
26746397 TGCTGCAGTATGAGCAAGACAAAAGGGAATTTTATGGTAAATCTTAGCATACTTTTTCACGCCTT
66 TGCTGCAGTATGAGCAAGACAAAAAGGAATTTTATGGTAAATCTTAGCATACTTTTTCACGCCTT
26746462 GGTCTGGTAGTTGATTCTGCTATTGTGTAGAATACACACACTATACATATATATTTGTATTTTC-
131 GGTCTGGTAGTTGATTCTGCTATTGTGTAGAATACACACACTATACATATATATTTGTA-TTTCA
26746526 ACGTCCCAA
195 ACGTCCCAA
26746535 TTTGATCTCTAAGCCCTGGATATTGTAACATGATGATGTTTCTTCGTATGAGTTGCACATCTTAC
1 TTTGATCTCTAAGCCCTGGATATTGTAACATGATGATGTTTCTTCGTATGAGTTGCACATCTTAC
*
26746600 TGCTGCAGTATGAGCAAGACAAAAAGGAATTTTATGGTAAATCTTAGCATACTTTTTCATGCCTT
66 TGCTGCAGTATGAGCAAGACAAAAAGGAATTTTATGGTAAATCTTAGCATACTTTTTCACGCCTT
26746665 GGTCTGGTAGTTGATTCTGCTATTGTGTAGAATACACACACTATACATATATATTTGTATTTCAA
131 GGTCTGGTAGTTGATTCTGCTATTGTGTAGAATACACACACTATACATATATATTTGTATTTCAA
26746730 CGTCCCAA
196 CGTCCCAA
26746738 TTTG
1 TTTG
26746742 TGCCGTCTTT
Statistics
Matches: 204, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
202 4 0.02
203 200 0.98
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (203 bp):
TTTGATCTCTAAGCCCTGGATATTGTAACATGATGATGTTTCTTCGTATGAGTTGCACATCTTAC
TGCTGCAGTATGAGCAAGACAAAAAGGAATTTTATGGTAAATCTTAGCATACTTTTTCACGCCTT
GGTCTGGTAGTTGATTCTGCTATTGTGTAGAATACACACACTATACATATATATTTGTATTTCAA
CGTCCCAA
Found at i:26761575 original size:125 final size:125
Alignment explanation
Indices: 26761460--26761772 Score: 464
Period size: 125 Copynumber: 2.5 Consensus size: 125
26761450 GCCAAACGGT
* * * *
26761460 AAATCGAAACCCAGTACAATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGTCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCACT
*
26761525 TTAATTTAAGAAAACATGGATGAAATTCCAAAAGGATATTCCGTATTTTAGTCGAATGAA
66 TTAATTTAAGAAAACATAGATGAAATTCCAAAAGGATATTCCGTATTTTAGTCGAATGAA
*
26761585 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCGCT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCACT
* ** * *
26761650 TTAATTTAAGAGAACATAGACAAAATTTCAAAAGGATATTCTGTATTTTAGTCGAATGAA
66 TTAATTTAAGAAAACATAGATGAAATTCCAAAAGGATATTCCGTATTTTAGTCGAATGAA
* * * * * * *
26761710 AAATCGAAACCTAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAAGATTTCCTCA
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCA
26761773 TGTTGAGGGG
Statistics
Matches: 169, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
125 169 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCACT
TTAATTTAAGAAAACATAGATGAAATTCCAAAAGGATATTCCGTATTTTAGTCGAATGAA
Found at i:26762393 original size:29 final size:26
Alignment explanation
Indices: 26762329--26762380 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
26762319 AGCTAAATTG
* *
26762329 TACATAAATAAATTTTAAAGAAAATA
1 TACATAAATAAATCTAAAAGAAAATA
*
26762355 TATAT-AATAAATCTAAAAGAAAATA
1 TACATAAATAAATCTAAAAGAAAATA
26762380 T
1 T
26762381 TTACATACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (26 bp):
TACATAAATAAATCTAAAAGAAAATA
Found at i:26762659 original size:24 final size:22
Alignment explanation
Indices: 26762601--26762662 Score: 63
Period size: 24 Copynumber: 2.8 Consensus size: 22
26762591 AATGAATGCC
*
26762601 AAATGAA-TTTAAAGAAATAAT
1 AAATGAATTTTAAAGAAATAAA
* * *
26762622 GAATGACTTATAAAGAATATAAA
1 AAATGAATTTTAAAGAA-ATAAA
26762645 AACATGAATTTTAAAGAA
1 AA-ATGAATTTTAAAGAA
26762663 CTCAATGGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 5 0.16
22 8 0.26
23 5 0.16
24 13 0.42
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.27
Consensus pattern (22 bp):
AAATGAATTTTAAAGAAATAAA
Found at i:26768400 original size:18 final size:18
Alignment explanation
Indices: 26768379--26768414 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26768369 AATAATTTTA
*
26768379 AAAAATTAGATAAAATTT
1 AAAAATAAGATAAAATTT
*
26768397 AAAAATAAGATTAAATTT
1 AAAAATAAGATAAAATTT
26768415 GTGATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (18 bp):
AAAAATAAGATAAAATTT
Found at i:26773859 original size:22 final size:21
Alignment explanation
Indices: 26773811--26773859 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
26773801 ATTTTTAAAC
* *
26773811 ATAAACTTATTATTTTTATTA
1 ATAAAATTATTATTTTTACTA
*
26773832 AAAAAATTATCTATTTTTACTA
1 ATAAAATTAT-TATTTTTACTA
*
26773854 TTAAAA
1 ATAAAA
26773860 ATTAACATAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAAAATTATTATTTTTACTA
Found at i:26774281 original size:22 final size:22
Alignment explanation
Indices: 26774255--26774302 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
26774245 TAGTAAACTT
* *
26774255 ATAAATTGATTACTTGAATATA
1 ATAAATTAATTAATTGAATATA
* *
26774277 ATAAATTAATTAATTTAATTTA
1 ATAAATTAATTAATTGAATATA
26774299 ATAA
1 ATAA
26774303 CTTATATTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (22 bp):
ATAAATTAATTAATTGAATATA
Found at i:26778849 original size:29 final size:29
Alignment explanation
Indices: 26778807--26778864 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
26778797 ATTGTTGGAG
*
26778807 AACGCAGGTTTATGTTGGTTAATAGTGGT
1 AACGCAGCTTTATGTTGGTTAATAGTGGT
*
26778836 AACGCAGCTTTATGTTGGTTGATAGTGGT
1 AACGCAGCTTTATGTTGGTTAATAGTGGT
26778865 TCATAGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.22, C:0.09, G:0.31, T:0.38
Consensus pattern (29 bp):
AACGCAGCTTTATGTTGGTTAATAGTGGT
Found at i:26779934 original size:87 final size:87
Alignment explanation
Indices: 26779832--26780013 Score: 348
Period size: 87 Copynumber: 2.1 Consensus size: 87
26779822 CAGGTATGTC
26779832 TACTACTTTCTTCGTTTGAATTGCCTTTGCACGTTACCTGATAATTGTTTTCAGTGCCATCATTC
1 TACTACTTTCTTCGTTTGAATTGCCTTTGCACGTTACCTGATAATTGTTTTCAGTGCCATCATTC
*
26779897 ATATGTTTACATATTTTGCAGG
66 ATATGTCTACATATTTTGCAGG
26779919 TACTACTTTCTTCGTTTGAATTGCCTTTGCACGTTACCTGATAATTGTTTTCAGTGCCATCATTC
1 TACTACTTTCTTCGTTTGAATTGCCTTTGCACGTTACCTGATAATTGTTTTCAGTGCCATCATTC
26779984 ATATGTCTACATATTTTGCAGG
66 ATATGTCTACATATTTTGCAGG
26780006 T-CTACTTT
1 TACTACTTT
26780014 GGAAAGACGA
Statistics
Matches: 94, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
86 7 0.07
87 87 0.93
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (87 bp):
TACTACTTTCTTCGTTTGAATTGCCTTTGCACGTTACCTGATAATTGTTTTCAGTGCCATCATTC
ATATGTCTACATATTTTGCAGG
Found at i:26783722 original size:18 final size:19
Alignment explanation
Indices: 26783685--26783723 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26783675 ATTACAAAAT
*
26783685 AATTCAAAATAATTTTTAA
1 AATTCAAAATAATTTATAA
*
26783704 AATTTAAAAT-ATTTATAA
1 AATTCAAAATAATTTATAA
26783722 AA
1 AA
26783724 AAATCCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTCAAAATAATTTATAA
Found at i:26784592 original size:8 final size:8
Alignment explanation
Indices: 26784579--26784635 Score: 53
Period size: 8 Copynumber: 7.0 Consensus size: 8
26784569 TTTTATTAAT
26784579 TTTTAAAA
1 TTTTAAAA
26784587 TTTTAAAA
1 TTTTAAAA
* *
26784595 ATTAAAAA
1 TTTTAAAA
*
26784603 ATTTAAAA
1 TTTTAAAA
26784611 -TTTAAAA
1 TTTTAAAA
*
26784618 CTATTAAAA
1 -TTTTAAAA
26784627 TTATTAAAA
1 TT-TTAAAA
26784636 GGTATAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
7 7 0.17
8 22 0.54
9 12 0.29
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (8 bp):
TTTTAAAA
Found at i:26792584 original size:26 final size:25
Alignment explanation
Indices: 26792541--26792593 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
26792531 TTTGGGATGG
26792541 AATGAGAGTAAATATTTT-AGGAGAA
1 AATGAGAGTAAATATTTTGAGG-GAA
26792566 AATGAGGAGTAAA-AGTTTTGAGGGAA
1 AATGA-GAGTAAATA-TTTTGAGGGAA
26792592 AA
1 AA
26792594 GTAAAAAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 6 0.24
26 16 0.64
27 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.28, T:0.25
Consensus pattern (25 bp):
AATGAGAGTAAATATTTTGAGGGAA
Found at i:26795863 original size:24 final size:24
Alignment explanation
Indices: 26795835--26795880 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
26795825 AAATATTTTT
26795835 TTATTTTATTTAATACTAATATAA
1 TTATTTTATTTAATACTAATATAA
*
26795859 TTATTTTATTTAATATTAATAT
1 TTATTTTATTTAATACTAATAT
26795881 TAATATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (24 bp):
TTATTTTATTTAATACTAATATAA
Found at i:26795900 original size:30 final size:30
Alignment explanation
Indices: 26795844--26795906 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
26795834 TTTATTTTAT
* *
26795844 TTAATACTAATATAATTATTTTATTTAATA
1 TTAATACTAATATAATAATTTAATTTAATA
* *
26795874 TTAATATTAATATAA-AATTTGAATTTATTA
1 TTAATACTAATATAATAATTT-AATTTAATA
26795904 TTA
1 TTA
26795907 TCTTTTTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (30 bp):
TTAATACTAATATAATAATTTAATTTAATA
Found at i:26806048 original size:26 final size:27
Alignment explanation
Indices: 26806009--26806066 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
26805999 TTTTTAATTT
*
26806009 TTTTATAATATTTA-AAAAAATATAAA
1 TTTTAGAATATTTATAAAAAATATAAA
* * *
26806035 TTTTAGAATTTTTATAAAAAATTTGAA
1 TTTTAGAATATTTATAAAAAATATAAA
26806062 TTTTA
1 TTTTA
26806067 AAAATTATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (27 bp):
TTTTAGAATATTTATAAAAAATATAAA
Found at i:26813741 original size:9 final size:9
Alignment explanation
Indices: 26813705--26813746 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
26813695 TTATAACTAA
26813705 TTAATT-AC
1 TTAATTAAC
*
26813713 TTAATTATC
1 TTAATTAAC
26813722 TTAATTAAAC
1 TTAATT-AAC
26813732 TTAATTAAC
1 TTAATTAAC
*
26813741 TAAATT
1 TTAATT
26813747 TAATCATCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
8 6 0.21
9 15 0.52
10 8 0.28
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (9 bp):
TTAATTAAC
Found at i:26813746 original size:19 final size:19
Alignment explanation
Indices: 26813698--26813743 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
26813688 ACTTAGTTTA
26813698 TAACTAATTAATTACTTAAT
1 TAACTAATTAA-TACTTAAT
*
26813718 TATCTTAATTAA-ACTTAAT
1 TAAC-TAATTAATACTTAAT
26813737 TAACTAA
1 TAACTAA
26813744 ATTTAATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 3 0.13
19 10 0.43
20 3 0.13
21 7 0.30
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (19 bp):
TAACTAATTAATACTTAAT
Found at i:26815197 original size:35 final size:35
Alignment explanation
Indices: 26815155--26815227 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
26815145 TCATAACCTT
26815155 CTTTTTTGTTATGCATTTACCATTTCTGTTCATAA
1 CTTTTTTGTTATGCATTTACCATTTCTGTTCATAA
26815190 CTTTTTTGTTATGCATTTACCATTTCTGTTCATAA
1 CTTTTTTGTTATGCATTTACCATTTCTGTTCATAA
26815225 CTT
1 CTT
26815228 AAGTTTACTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.19, C:0.18, G:0.08, T:0.55
Consensus pattern (35 bp):
CTTTTTTGTTATGCATTTACCATTTCTGTTCATAA
Found at i:26816827 original size:22 final size:22
Alignment explanation
Indices: 26816776--26816827 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
26816766 TTACTTTAAA
*
26816776 ATTTAAT--TATAAAAATATGT
1 ATTTAATAATATAAAAATATAT
* * *
26816796 AATTATTAATATAAAATTATAT
1 ATTTAATAATATAAAAATATAT
26816818 ATTTAATAAT
1 ATTTAATAAT
26816828 TATTGATATT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 5 0.21
22 19 0.79
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
ATTTAATAATATAAAAATATAT
Found at i:26817435 original size:23 final size:23
Alignment explanation
Indices: 26817408--26817467 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
26817398 ATAATGATAT
*
26817408 TATAATATATATTTTTGT-ATTAA
1 TATAA-ATATATTTTTATAATTAA
*
26817431 TATAAATATAATTTTATAATTAA
1 TATAAATATATTTTTATAATTAA
*
26817454 AATAAATA-ATTTTT
1 TATAAATATATTTTT
26817468 TTTTAAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 15 0.47
23 17 0.53
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TATAAATATATTTTTATAATTAA
Found at i:26818203 original size:17 final size:18
Alignment explanation
Indices: 26818173--26818206 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
26818163 ATTAATTAGT
26818173 TTGAAATAATTAAAATAA
1 TTGAAATAATTAAAATAA
26818191 TTGAAAT-ATTAAAATA
1 TTGAAATAATTAAAATA
26818207 TATCAACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (18 bp):
TTGAAATAATTAAAATAA
Found at i:26818873 original size:14 final size:14
Alignment explanation
Indices: 26818847--26818897 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
26818837 GAAAACAAAA
26818847 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
26818861 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
26818875 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
26818890 G-AATAAAA
1 GAAATAAAA
26818898 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:26818908 original size:17 final size:16
Alignment explanation
Indices: 26818886--26818919 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26818876 AAGTTAAAAT
26818886 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
26818903 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
26818919 A
1 A
26818920 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:26819640 original size:3 final size:3
Alignment explanation
Indices: 26819619--26819665 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
26819609 GTAAGTATAA
* *
26819619 TAT TAG TAT TAA T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26819666 GAGTGGGAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 1 0.03
3 38 0.97
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:26820079 original size:37 final size:39
Alignment explanation
Indices: 26820020--26820115 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
26820010 CGGATAGATT
* * * *
26820020 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
26820057 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
26820096 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
26820116 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:26826313 original size:22 final size:22
Alignment explanation
Indices: 26826288--26826338 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
26826278 TTATTATATT
*
26826288 AAAGTAATTAAATAAAGAAAAC
1 AAAGTAATAAAATAAAGAAAAC
* * *
26826310 AAAGAAATAAAATAAAGGAAAT
1 AAAGTAATAAAATAAAGAAAAC
26826332 AAAGTAA
1 AAAGTAA
26826339 AGTAAGTTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.71, C:0.02, G:0.12, T:0.16
Consensus pattern (22 bp):
AAAGTAATAAAATAAAGAAAAC
Found at i:26826332 original size:14 final size:14
Alignment explanation
Indices: 26826313--26826355 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
26826303 AGAAAACAAA
26826313 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
26826327 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* *
26826341 TAAGTTAAAATAAAG
1 GAA-ATAAAATAAAG
26826356 AATAAAAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 15 0.62
15 9 0.38
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.19
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:26827513 original size:37 final size:39
Alignment explanation
Indices: 26827454--26827549 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
26827444 CGGATAGATT
* * * *
26827454 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
26827491 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
26827530 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
26827550 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:26847539 original size:17 final size:16
Alignment explanation
Indices: 26847507--26847544 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
26847497 AAATATAATG
26847507 ATATATAAAATAATATT
1 ATATATAAAATAATA-T
26847524 ATATATAAAAGT-ATAT
1 ATATATAAAA-TAATAT
26847540 ATATA
1 ATATA
26847545 CACGTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 13 0.65
18 1 0.05
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
ATATATAAAATAATAT
Found at i:26847586 original size:12 final size:12
Alignment explanation
Indices: 26847479--26847587 Score: 59
Period size: 12 Copynumber: 9.3 Consensus size: 12
26847469 CAATAGTGAA
*
26847479 AATAATAAGTAT
1 AATAATAAATAT
26847491 AATAATAAATAT
1 AATAATAAATAT
* * *
26847503 AATGATATATAA
1 AATAATAAATAT
*
26847515 AATAAT-ATTAT
1 AATAATAAATAT
*
26847526 ATATAA-AAGTAT
1 A-ATAATAAATAT
* **
26847538 -ATATATACACGT
1 AATA-ATAAATAT
26847550 -ATAATAAA-AT
1 AATAATAAATAT
*
26847560 AATACT-AATATT
1 AATAATAAATA-T
26847572 AATAATAAATAT
1 AATAATAAATAT
26847584 AATA
1 AATA
26847588 GGGATAAAAA
Statistics
Matches: 72, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
10 6 0.08
11 13 0.18
12 49 0.68
13 4 0.06
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.35
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:26847636 original size:25 final size:26
Alignment explanation
Indices: 26847608--26847676 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
26847598 TAGATATAAT
*
26847608 AATATGTACATAATATGGTA-TTAAA
1 AATATGTACATAATATAGTATTTAAA
* *
26847633 AATATATATATAATATAGTATTTAAA
1 AATATGTACATAATATAGTATTTAAA
26847659 AA-ATGTATACATAATATA
1 AATATG--TACATAATATA
26847677 TATATTATGA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 19 0.53
26 7 0.19
27 10 0.28
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.38
Consensus pattern (26 bp):
AATATGTACATAATATAGTATTTAAA
Found at i:26847660 original size:27 final size:25
Alignment explanation
Indices: 26847608--26847676 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 25
26847598 TAGATATAAT
* *
26847608 AATATGTACATAATATGGTATTAAA
1 AATATATACATAATATAGTATTAAA
*
26847633 AATATATATATAATATAGTATTTAAAA
1 AATATATACATAATATAGTA-TT-AAA
*
26847660 AATGTATACATAATATA
1 AATATATACATAATATA
26847677 TATATTATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 17 0.46
26 2 0.05
27 18 0.49
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.38
Consensus pattern (25 bp):
AATATATACATAATATAGTATTAAA
Found at i:26847694 original size:3 final size:3
Alignment explanation
Indices: 26847686--26847769 Score: 57
Period size: 3 Copynumber: 28.3 Consensus size: 3
26847676 ATATATTATG
* * * * *
26847686 AAT AAT AAT AAT AGT ATAT ACAT -AT AAA AAT -AT ATT AAT ATT AAA
1 AAT AAT AAT AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
26847731 AAT AAT AAT CAT AAT AGT AAT ACT AAT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
26847770 CAATGACAAA
Statistics
Matches: 60, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
2 6 0.10
3 50 0.83
4 4 0.07
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26848014 original size:22 final size:22
Alignment explanation
Indices: 26847977--26848033 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
26847967 TACTAAAAAG
*
26847977 AAATATATAAATAAATAGGATAGA
1 AAATAGAT-AATAAATAGGATA-A
*
26848001 AAATA-ATAATAAATATGATAA
1 AAATAGATAATAAATAGGATAA
*
26848022 TAATAGATAATA
1 AAATAGATAATA
26848034 GCAAAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 5 0.17
22 18 0.60
23 2 0.07
24 5 0.17
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (22 bp):
AAATAGATAATAAATAGGATAA
Found at i:26849624 original size:62 final size:63
Alignment explanation
Indices: 26849549--26849690 Score: 232
Period size: 62 Copynumber: 2.3 Consensus size: 63
26849539 TCTTTGGTCC
* *
26849549 GCTCCACTACAACTTCAGGATTTCGCTACAACTTCATGGAGATAA-ACTTGTAATTTCAACCT
1 GCTCCACTACAACTTCAGGATTCCGCTACAACTTCATAGAGATAAGACTTGTAATTTCAACCT
* *
26849611 GCTCCACAACAACTTCAGGGTTCCGCTACAACTTCATAGAGATAAGACTTGTAATTTCAACCT
1 GCTCCACTACAACTTCAGGATTCCGCTACAACTTCATAGAGATAAGACTTGTAATTTCAACCT
*
26849674 GCTCCACTGCAACTTCA
1 GCTCCACTACAACTTCA
26849691 AGGAGGCCAA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
62 41 0.56
63 32 0.44
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (63 bp):
GCTCCACTACAACTTCAGGATTCCGCTACAACTTCATAGAGATAAGACTTGTAATTTCAACCT
Found at i:26849973 original size:63 final size:65
Alignment explanation
Indices: 26849893--26850220 Score: 178
Period size: 75 Copynumber: 4.6 Consensus size: 65
26849883 GAGTTGATAG
*
26849893 AAACTAAAAATACCTCAGCATGTGACCCGAGG-GTCA-CAATATGAGTTGATTTTTTTGAAACAT
1 AAACTAAAAATACCTCAGCATGTGACCCGAGGACTCACCAATATGAGTTGATTTTTTTGAAACAT
* * *
26849956 AAACTAAAAATACCTCAGTACGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAACTAAAAATACCTCAGCATGTGACCCGAGG----ACTCA-----C-CAATATGAGTTGATTTT
26850021 TTTGAAACAT
56 TTTGAAACAT
* *
26850031 AAACT-AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACGTT
1 AAACTAAAAATACCTCAGCATGTGACCCGAGG----ACTCA-----C-CAATATGAGTTGA----
*
26850095 TTTTTTTTAAAACAT
52 -TTTTTTTGAAACAT
* * * ** *
26850110 AAATTAAAAATACCTCAGTGCATGATTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
1 AAACTAAAAATACCTCA--GCATG---TGA--CCCGA-GGAC-TCAC-CAATATGAGTTGATTTT
26850175 TTTGAAACAT
56 TTTGAAACAT
* *
26850185 AAACTAAAAATACCTCAGCGTGTAACCCGAGG-CTCA
1 AAACTAAAAATACCTCAGCATGTGACCCGAGGACTCA
26850221 ACTCACCTCT
Statistics
Matches: 211, Mismatches: 27, Indels: 52
0.73 0.09 0.18
Matches are distributed among these distances:
63 29 0.14
65 2 0.01
66 1 0.00
68 6 0.03
70 2 0.01
73 4 0.02
74 50 0.24
75 61 0.29
79 17 0.08
80 26 0.12
82 4 0.02
84 2 0.01
85 5 0.02
87 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (65 bp):
AAACTAAAAATACCTCAGCATGTGACCCGAGGACTCACCAATATGAGTTGATTTTTTTGAAACAT
Found at i:26850097 original size:75 final size:75
Alignment explanation
Indices: 26849929--26850501 Score: 504
Period size: 75 Copynumber: 7.3 Consensus size: 75
26849919 CCGAGGGTCA
*** * *
26849929 CAATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGTACGCGACCCGAGGCTCAAC
1 CAATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGCGTGTGACCTGAGGCTCAAC
26849994 TCACCTCTCG
66 TCACCTCTCG
26850004 CAATATGAGTTGATTTTTTTGAAACATAAACT-AAAATACCTCAGCGTGTGACCTGAGGCTCAAC
1 CAATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGCGTGTGACCTGAGGCTCAAC
26850068 TCACCTCTCG
66 TCACCTCTCG
* * * ** **
26850078 CAATATGAGTTGACGTTTTTTTTTTAAAACATAAATTAAAAATACCTCAGTGCATGATTTGAGGC
1 CAATATGAGTTGA-----TTTTTTTGAAACATAAACTAAAAATACCTCAGCGTGTGACCTGAGGC
*
26850143 TCAACTCACTTCTCG
61 TCAACTCACCTCTCG
* *
26850158 CAATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGCGTGTAACCCGAGGCTCAAC
1 CAATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGCGTGTGACCTGAGGCTCAAC
26850223 TCACCTCTCG
66 TCACCTCTCG
***** * * *
26850233 CAATATGAGTTGACGTTTTCTTTTTTTTTGTTTTTTTTAAACATAAATTGAAAATATCTCAGTGC
1 CAATATGAGTTGA---------TTTTTTTG--AAACATAAAC-T--A---AAAATACCTCAGCGT
** * *
26850298 GTGATTTGAGGCTCAACTTACTTCTCG
49 GTGACCTGAGGCTCAACTCACCTCTCG
* * * * * *
26850325 CAATATGAGTTGACTTTTTCGAAAAATAGGAACTGAAGATACCTCAGCATGTGACCTGAGGCTCA
1 CAATATGAGTTGATTTTTTTGAAACATA--AACTAAAAATACCTCAGCGTGTGACCTGAGGCTCA
*
26850390 ACTCACCTCTCA
64 ACTCACCTCTCG
* * * * *
26850402 CCATATGAGTTGA-TTTTTTGAACAACAGAAATTGAAAATACCTC-GACGTGTGACCCGAGGCTC
1 CAATATGAGTTGATTTTTTTG-A-AACATAAACTAAAAATACCTCAG-CGTGTGACCTGAGGCTC
* *
26850465 AACTCTCCTCTCA
63 AACTCACCTCTCG
*
26850478 CAATATAAGTTGATTTTTTTGAAA
1 CAATATGAGTTGATTTTTTTGAAA
26850502 AACAGAAATA
Statistics
Matches: 403, Mismatches: 66, Indels: 58
0.76 0.13 0.11
Matches are distributed among these distances:
74 50 0.12
75 100 0.25
76 58 0.14
77 52 0.13
78 4 0.01
79 17 0.04
80 49 0.12
81 2 0.00
82 1 0.00
83 9 0.02
84 8 0.02
86 5 0.01
87 1 0.00
89 1 0.00
92 46 0.11
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (75 bp):
CAATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGCGTGTGACCTGAGGCTCAAC
TCACCTCTCG
Found at i:26850250 original size:155 final size:154
Alignment explanation
Indices: 26849942--26850501 Score: 612
Period size: 154 Copynumber: 3.6 Consensus size: 154
26849932 TATGAGTTGA
* * * *
26849942 TTTTTTTGAAACATAAACTAAAAATACCTCAGTACGCGACCCGAGGCTCAACTCACCTCTCGCAA
1 TTTTTTTAAAACATAAATTAAAAATACCTCAGTGCGTGACCCGAGGCTCAACTCACCTCTCGCAA
26850007 TATGAGTTGATTTTTTTGAAACATAAACTAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCAC
66 TATGAGTTGATTTTTTTGAAACATAAACTAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCAC
26850072 CTCTCGCAATATGAGTTGACGTTT
131 CTCTCGCAATATGAGTTGACGTTT
* *** *
26850096 TTTTTTTAAAACATAAATTAAAAATACCTCAGTGCATGATTTGAGGCTCAACTCACTTCTCGCAA
1 TTTTTTTAAAACATAAATTAAAAATACCTCAGTGCGTGACCCGAGGCTCAACTCACCTCTCGCAA
* *
26850161 TATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGCGTGTAACCCGAGGCTCAACTCA
66 TATGAGTTGATTTTTTTGAAACATAAACT-AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCA
26850226 CCTCTCGCAATATGAGTTGACGTTTTCTTTTTTTTT
130 CCTCTCGCAATATGAGTTGACG-----------TTT
* * * *** * *
26850262 GTTTTTTTTAAACATAAATTGAAAATATCTCAGTGCGTGATTTGAGGCTCAACTTACTTCTCGCA
1 -TTTTTTTAAAACATAAATTAAAAATACCTCAGTGCGTGACCCGAGGCTCAACTCACCTCTCGCA
* * * * *
26850327 ATATGAGTTGACTTTTTCGAAAAATAGGAACTGAAGATACCTCAGCATGTGACCTGAGGCTCAAC
65 ATATGAGTTGATTTTTTTGAAACATA--AACT-AAAATACCTCAGCGTGTGACCTGAGGCTCAAC
* *
26850392 TCACCTCTCACCATATGAGTTGA-----
127 TCACCTCTCGCAATATGAGTTGACGTTT
* * * * *
26850415 TTTTTTGAACAACAGAAATTGAAAATACCTCGACGT--GTGACCCGAGGCTCAACTCTCCTCTCA
1 TTTTTTTAA-AACATAAATTAAAAATACCTC-A-GTGCGTGACCCGAGGCTCAACTCACCTCTCG
*
26850478 CAATATAAGTTGATTTTTTTGAAA
63 CAATATGAGTTGATTTTTTTGAAA
26850502 AACAGAAATA
Statistics
Matches: 348, Mismatches: 40, Indels: 37
0.82 0.09 0.09
Matches are distributed among these distances:
152 7 0.02
153 60 0.17
154 86 0.25
155 57 0.16
166 3 0.01
167 82 0.24
169 53 0.15
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (154 bp):
TTTTTTTAAAACATAAATTAAAAATACCTCAGTGCGTGACCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTTGAAACATAAACTAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGACGTTT
Found at i:26850275 original size:92 final size:92
Alignment explanation
Indices: 26850171--26850344 Score: 231
Period size: 92 Copynumber: 1.9 Consensus size: 92
26850161 TATGAGTTGA
*
26850171 TTTTTTTGAAACATAAACTAAAAATACCTCAGCGTGTAACCCGAGGCTCAACTCACCTCTCGCAA
1 TTTTTTTGAAACATAAACTAAAAATACCTCAGCGCGTAACCCGAGGCTCAACTCACCTCTCGCAA
26850236 TATGAGTTGACGTTTTCTTTTTTTTTG
66 TATGAGTTGACGTTTTCTTTTTTTTTG
* * * * * * *** * *
26850263 TTTTTTTTAAACATAAATTGAAAATATCTCAGTGCGTGATTTGAGGCTCAACTTACTTCTCGCAA
1 TTTTTTTGAAACATAAACTAAAAATACCTCAGCGCGTAACCCGAGGCTCAACTCACCTCTCGCAA
*
26850328 TATGAGTTGACTTTTTC
66 TATGAGTTGACGTTTTC
26850345 GAAAAATAGG
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
92 69 1.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (92 bp):
TTTTTTTGAAACATAAACTAAAAATACCTCAGCGCGTAACCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGACGTTTTCTTTTTTTTTG
Found at i:26850412 original size:169 final size:168
Alignment explanation
Indices: 26850095--26850414 Score: 489
Period size: 167 Copynumber: 1.9 Consensus size: 168
26850085 AGTTGACGTT
26850095 TTTTTTTTAAAACATAAATTAAAAATACCTCAGTGCATGATTTGAGGCTCAACTCACTTCTCGCA
1 TTTTTTTTAAAACATAAATTAAAAATACCTCAGTGCATGATTTGAGGCTCAACTCACTTCTCGCA
* * * *
26850160 ATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGCGTGTAACCCGAGGCTCAACTC
66 ATATGAGTTGACTTTTTCGAAAAATAAACTAAAAATACCTCAGCATGTAACCCGAGGCTCAACTC
*
26850225 ACCTCTCGCAATATGAGTTGACGTTTTCTTTTTTTTTG
131 ACCTCTCACAATATGAGTTGACGTTTTCTTTTTTTTTG
* * * *
26850263 TTTTTTTT-AAACATAAATTGAAAATATCTCAGTGCGTGATTTGAGGCTCAACTTACTTCTCGCA
1 TTTTTTTTAAAACATAAATTAAAAATACCTCAGTGCATGATTTGAGGCTCAACTCACTTCTCGCA
* * * *
26850327 ATATGAGTTGACTTTTTCGAAAAATAGGAACTGAAGATACCTCAGCATGTGACCTGAGGCTCAAC
66 ATATGAGTTGACTTTTTCGAAAAATA--AACTAAAAATACCTCAGCATGTAACCCGAGGCTCAAC
*
26850392 TCACCTCTCACCATATGAGTTGA
129 TCACCTCTCACAATATGAGTTGA
26850415 TTTTTTGAAC
Statistics
Matches: 136, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
167 75 0.55
168 8 0.06
169 53 0.39
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (168 bp):
TTTTTTTTAAAACATAAATTAAAAATACCTCAGTGCATGATTTGAGGCTCAACTCACTTCTCGCA
ATATGAGTTGACTTTTTCGAAAAATAAACTAAAAATACCTCAGCATGTAACCCGAGGCTCAACTC
ACCTCTCACAATATGAGTTGACGTTTTCTTTTTTTTTG
Found at i:26850465 original size:76 final size:77
Alignment explanation
Indices: 26850305--26850510 Score: 254
Period size: 76 Copynumber: 2.7 Consensus size: 77
26850295 TGCGTGATTT
* * * * * * * *
26850305 GAGGCTCAACTTACTTCTCGCAATATGAGTTGACTTTTTCGAAAAATAGGAACTGAAGATACCTC
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGACTTTTTTGAAAAACAGAAATTGAAAATACCTC
*
26850370 AGCATGTGACCT
66 AGCATGTGACCC
* *
26850382 GAGGCTCAACTCACCTCTCACCATATGAGTTGA-TTTTTTGAACAACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGACTTTTTTGAAAAACAGAAATTGAAAATACCTC
*
26850446 -GACGTGTGACCC
66 AG-CATGTGACCC
* * *
26850458 GAGGCTCAACTCTCCTCTCACAATATAAGTTGATTTTTTTGAAAAACAGAAAT
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGACTTTTTTGAAAAACAGAAAT
26850511 AAAAATATCA
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
75 1 0.01
76 63 0.57
77 47 0.42
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (77 bp):
GAGGCTCAACTCACCTCTCACAATATGAGTTGACTTTTTTGAAAAACAGAAATTGAAAATACCTC
AGCATGTGACCC
Found at i:26859370 original size:31 final size:31
Alignment explanation
Indices: 26859335--26859396 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
26859325 ACCGTTCTTA
26859335 TGCAATTTTAGCTAATTTCTAAACATTTTCT
1 TGCAATTTTAGCTAATTTCTAAACATTTTCT
26859366 TGCAATTTTAGCTAATTTCTAAACATTTTCT
1 TGCAATTTTAGCTAATTTCTAAACATTTTCT
26859397 CTCAAAGAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.06, T:0.48
Consensus pattern (31 bp):
TGCAATTTTAGCTAATTTCTAAACATTTTCT
Found at i:26861469 original size:119 final size:121
Alignment explanation
Indices: 26861246--26861542 Score: 483
Period size: 119 Copynumber: 2.5 Consensus size: 121
26861236 AATTATTTTA
* * * *
26861246 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTCAAATTATATTT
26861310 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
26861366 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAAT-ATTATGTT-AATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTCAAATTATATTT
* *
26861429 TATAGTATCATATATTATTATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
26861485 AATTTTATTAAATTCTATATTTTAATTATAATATATCTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTCAAAT
26861543 ATGATTAAAT
Statistics
Matches: 164, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
119 110 0.67
120 51 0.31
121 3 0.02
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (121 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTCAAATTATATTT
TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:26861764 original size:45 final size:40
Alignment explanation
Indices: 26861666--26861775 Score: 105
Period size: 45 Copynumber: 2.6 Consensus size: 40
26861656 TTTTCCATTA
26861666 TGCTATTACACCTCTATTCCATT-CAACCAACCACAAGAT
1 TGCTATTACACCTCTATTCCATTACAACCAACCACAAGAT
* * ** *
26861705 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACAACCAACC--ACA--AGA-T
* *
26861750 TGCTATTACACCTCTAATCCAATACA
1 TGCTATTACACCTCTATTCCATTACA
26861776 CCTCTAATCC
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
39 21 0.38
40 7 0.12
42 3 0.05
44 2 0.04
45 23 0.41
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (40 bp):
TGCTATTACACCTCTATTCCATTACAACCAACCACAAGAT
Found at i:26861777 original size:16 final size:16
Alignment explanation
Indices: 26861756--26861823 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
26861746 GATTTGCTAT
26861756 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26861772 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
26861788 TACAACTCTAATCCAA
1 TACACCTCTAATCCAA
26861804 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26861820 TACA
1 TACA
26861824 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:26865151 original size:23 final size:22
Alignment explanation
Indices: 26865100--26865151 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
26865090 CCTCGTCTTT
*
26865100 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
26865122 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
26865145 TTCTTTT
1 TTCTTTT
26865152 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:26882350 original size:15 final size:15
Alignment explanation
Indices: 26882332--26882363 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
26882322 TTTTCAACTA
26882332 TTATTATATTTCTAT
1 TTATTATATTTCTAT
26882347 TTATTATATTTCTAT
1 TTATTATATTTCTAT
26882362 TT
1 TT
26882364 CTATTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATTATATTTCTAT
Found at i:26882515 original size:25 final size:24
Alignment explanation
Indices: 26882449--26882547 Score: 99
Period size: 24 Copynumber: 4.0 Consensus size: 24
26882439 TTTTTTTGTT
*
26882449 ATTATTTATTTTAACTTTTTATAC
1 ATTATTTATTTTAAATTTTTATAC
** * *
26882473 AACATTCATTTCAAATTTTTATAC
1 ATTATTTATTTTAAATTTTTATAC
* *
26882497 ATTATTTATTTTAATATTTTCATAT
1 ATTATTTATTTTAA-ATTTTTATAC
* *
26882522 ATTATGTATTTTAAACTTTTTTTAC
1 ATTATTTATTTTAAA-TTTTTATAC
26882547 A
1 A
26882548 CATTATATTT
Statistics
Matches: 58, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
24 30 0.52
25 28 0.48
ACGTcount: A:0.32, C:0.09, G:0.01, T:0.58
Consensus pattern (24 bp):
ATTATTTATTTTAAATTTTTATAC
Found at i:26883090 original size:71 final size:71
Alignment explanation
Indices: 26883010--26883145 Score: 245
Period size: 71 Copynumber: 1.9 Consensus size: 71
26883000 GTTTTCTTAA
* * *
26883010 ATTAAAATAAGGCAATATTTTGTGTTTGGAAATTTGAGAAATCGTGCCTAATCCTGCTGGGTTTC
1 ATTAAAATAAGGCAATATTTTGTGTTTGGAAATTCGAGAAATCATACCTAATCCTGCTGGGTTTC
26883075 GACATT
66 GACATT
26883081 ATTAAAATAAGGCAATATTTTGTGTTTGGAAATTCGAGAAATCATACCTAATCCTGCTGGGTTTC
1 ATTAAAATAAGGCAATATTTTGTGTTTGGAAATTCGAGAAATCATACCTAATCCTGCTGGGTTTC
26883146 AACTTACCGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (71 bp):
ATTAAAATAAGGCAATATTTTGTGTTTGGAAATTCGAGAAATCATACCTAATCCTGCTGGGTTTC
GACATT
Found at i:26888482 original size:20 final size:19
Alignment explanation
Indices: 26888442--26888485 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
26888432 AATAACATAT
*
26888442 TAAAAAATATAAATATAAA
1 TAAAAAATATAAACATAAA
26888461 TAAAAAA-ATAAGACATATAA
1 TAAAAAATATAA-ACATA-AA
26888481 TAAAA
1 TAAAA
26888486 TTTTAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 11 0.50
20 7 0.32
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (19 bp):
TAAAAAATATAAACATAAA
Found at i:26889731 original size:888 final size:883
Alignment explanation
Indices: 26888196--26889863 Score: 2211
Period size: 888 Copynumber: 1.9 Consensus size: 883
26888186 CACAAGTTTG
*
26888196 AAATGTAATACATAGATCATTTTAAATCAAATTTAAAAACTATAAAATATTTCCAAACATAACAC
1 AAATGTAATACATACATCATTTTAAATCAAATTTAAAAACTATAAAATATTTCCAAACATAACAC
* *
26888261 TTCATCAAATCTCAATTCTTTAAAATTTAAATTTATAAATTTACAAAAACATACGAAGCATTTAA
66 TTCATCAAATCTCAACTCTTTAAAATTTAAATTTATAAATTTACAAAAACAAACGAAGCATTTAA
* * * *
26888326 ATCAATTAATGATATAATTATGGGGAAAATATTTGTAGCATTGTTAATAACGTTTTTAATCTTTA
131 ATCAATTAATGATATAATTATGGGAAAAATATTTGTAGCACTATTAATAACGTTTTTAATATTTA
* * * * * *
26888391 TAAATAAGATTAGGATGATGACAAGTTTTTTTATAAGATATAATAACATATTAAAAAATATAAAT
196 CAAATAAAATTAGAATGATGACAAGTATTTTCATAAGATATAATAACATATTAAAAAACATAAAT
* *
26888456 ATAAATAAAAAAATAAGACATATAATAAAATTTTAAATTTATTTGTAGAATTAAAAAAATATATT
261 ATAAATAAAAAAATAACACATATAATAAAATTTTAAACTTATTTGTAGAATTAAAAAAATATA--
* * *
26888521 GTCAATGTACTCAATGCTAATCCATAATTATATAAAAAACCTAATGATATCATTTCTATGAAATA
324 -TCAATG-ACTAAATACTAATCCATAATTATATAAAAAACCTAATGATATCATTTCTACGAAATA
*
26888586 TTAAAAAAAACTTTGAAGTTGAAATTAGTTTTTAAACATATATTTAGATAATTAATTAAAATACT
387 TTAAAAAAAACTTAGAAGTTGAAATTAGTTTTTAAACATATATTTAGATAATTAATTAAAATACT
* *
26888651 TAAAATAATAGAAGTAAAAAAGAAGAAGCTTAAAGCATTCTTAAAATAGTTTAAAGCATTATTTA
452 TAAAATAATAGAAGT-AAAAAGAAGAAGCTTAAAGCATTCCTAAAATAGTTTAAAGCATTATTCA
* * * *
26888716 TCTCTTAAAATGTATAATTTTTTATATCTTTATGTGCTTTTATTTTTAAAGAGATTATTGGCGAC
516 TCTCTTAAAATATATAATTTTTGATATCTTTATGTACTTTTATTTTTAAAGAGATCATTGGCGAC
** * * *
26888781 TTGAAAGGGGGTATTCAATGAGATTTGAATTTTATAGTTGGAGAGCTAATAAGTTGTGATTGGAA
581 TTGAAAAAGGGTATTCAAAGAGATTTGAATTTCATAATTGGAGAGCTAATAAGTTGTGATTGGAA
* ** * * * * * *
26888846 TGTTGTCTTTAAGCAAATCTTACGAGAGGCAAACTCCATTGTATACTCGTTGGCTGGTATAATGA
646 TGTTGTCTTTAAACAAATCCAACAAGAGACAAACTCCATCGCACACTCGTTGGCTGGTACAATGA
* * * **
26888911 AGGAAGTATCGGTTGGTACTCAGATATTTCATAGTGTCCCCTCTTTGGTCAATCATCTTGTCAGA
711 AGGAAGCATCGGTTGGTACTCAGATATTTCATAATGCCCCCTCTTTACTCAATCATCTTGTCAGA
26888976 GTGGATAGCATGTCTAAGTGTTCGAATCTGTTATTTCTTATTTCAAACTAATTAAAAAGTGAGAT
776 GTGGATAGCATGTCTAAGTGTTCGAATCTGTTATTTCTTATTTCAAACTAATTAAAAAGTGAGAT
26889041 ATGACATTTTTATTAATATTTATATGTAAATTCTAAAAAAATT
841 ATGACATTTTTATTAATATTTATATGTAAATTCTAAAAAAATT
** * * *
26889084 AAATGTAATACATACATCATTTTAAATCAAATTTAAAAGTTATAAAATATTT-CTAATATGACAC
1 AAATGTAATACATACATCATTTTAAATCAAATTTAAAAACTATAAAATATTTCCAAACATAACAC
* * * *
26889148 TTCATGAAATCTCAACTCTTTAAAATTTAAATTTATGAGTTTACAAAAACAAATGAAGCATTTAA
66 TTCATCAAATCTCAACTCTTTAAAATTTAAATTTATAAATTTACAAAAACAAACGAAGCATTTAA
* *
26889213 ATCAATTAATGATTATATTTATTGGAAAAATATTTGATA-CACTATTAATAGA-GTTTTTTAA-A
131 ATCAATTAATGA-TATAATTATGGGAAAAATATTTG-TAGCACTATTAATA-ACG-TTTTTAATA
* * *
26889275 TTTACAAGTAAAATTAGAATGATGATAAGTATTTTCATAAGATATAGTAA-AGTATTAAAAAACA
192 TTTACAAATAAAATTAGAATGATGACAAGTATTTTCATAAGATATAATAACA-TATTAAAAAACA
* * * *
26889339 TAAATATAAATTAAAAAATAACACATATAATAAATTTTTAAACTTATTTGT-GAAATTAGAAGAA
256 TAAATATAAATAAAAAAATAACACATATAATAAAATTTTAAACTTATTTGTAG-AATTAAAAAAA
* *
26889403 TATA-C-A-G-C-AAATACTAATCTATAATTATATAAGAAAA-CTAATGATATCATTTCTACGAT
320 TATATCAATGACTAAATACTAATCCATAATTATATAA-AAAACCTAATGATATCATTTCTACGAA
*
26889462 ATATTAAAAAAAAAACTTAGAAGTTTGAAATTAGTTTTTAAACATATATTTATATAATTAATTAA
384 ATATT--AAAAAAAACTTAGAAG-TTGAAATTAGTTTTTAAACATATATTTAGATAATTAATTAA
* * *
26889527 AATATTTAAAATAATAGAAGT-GAAA-AA-AAGCTTAAAGCATTCCTAAAATAGTTTAAAGTATT
446 AATACTTAAAATAATAGAAGTAAAAAGAAGAAGCTTAAAGCATTCCTAAAATAGTTTAAAGCATT
26889589 ATTCATCTCTTAAAATATATAA-TTTTGATATCTTTGTAGAAATAGATTATACTTTTATTTTTAA
511 ATTCATCTCTTAAAATATATAATTTTTGATATC-TT-T----AT-G----TACTTTTATTTTTAA
* * *
26889653 AGAGATCATTGGTGACTTGAAAAAGGGTATTCAAAGAGATTTG-ATTATCATAATTCGG-GCGTT
565 AGAGATCATTGGCGACTTGAAAAAGGGTATTCAAAGAGATTTGAATT-TCATAATT-GGAGAGCT
* * * * * * *
26889716 ATTAAGTTTTGATTGGAATGTTGTCTTTAAATAGATCCAACAAGAGATAAACTCCGTCGCACATT
628 AATAAGTTGTGATTGGAATGTTGTCTTTAAACAAATCCAACAAGAGACAAACTCCATCGCACACT
* * * **
26889781 CGTTGGCTGGTACGATGAAGGAAGCGTCGGTTGGTATTCCTATATTTCATAATGCCCCCTCTTTA
693 CGTTGGCTGGTACAATGAAGGAAGCATCGGTTGGTACTCAGATATTTCATAATGCCCCCTCTTTA
26889846 CTCAATCATCTTGTCAGA
758 CTCAATCATCTTGTCAGA
26889864 ATAGGATGTT
Statistics
Matches: 674, Mismatches: 83, Indels: 46
0.84 0.10 0.06
Matches are distributed among these distances:
877 9 0.01
878 55 0.08
879 49 0.07
880 8 0.01
881 15 0.02
882 61 0.09
883 3 0.00
884 2 0.00
887 85 0.13
888 375 0.56
889 12 0.02
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.37
Consensus pattern (883 bp):
AAATGTAATACATACATCATTTTAAATCAAATTTAAAAACTATAAAATATTTCCAAACATAACAC
TTCATCAAATCTCAACTCTTTAAAATTTAAATTTATAAATTTACAAAAACAAACGAAGCATTTAA
ATCAATTAATGATATAATTATGGGAAAAATATTTGTAGCACTATTAATAACGTTTTTAATATTTA
CAAATAAAATTAGAATGATGACAAGTATTTTCATAAGATATAATAACATATTAAAAAACATAAAT
ATAAATAAAAAAATAACACATATAATAAAATTTTAAACTTATTTGTAGAATTAAAAAAATATATC
AATGACTAAATACTAATCCATAATTATATAAAAAACCTAATGATATCATTTCTACGAAATATTAA
AAAAAACTTAGAAGTTGAAATTAGTTTTTAAACATATATTTAGATAATTAATTAAAATACTTAAA
ATAATAGAAGTAAAAAGAAGAAGCTTAAAGCATTCCTAAAATAGTTTAAAGCATTATTCATCTCT
TAAAATATATAATTTTTGATATCTTTATGTACTTTTATTTTTAAAGAGATCATTGGCGACTTGAA
AAAGGGTATTCAAAGAGATTTGAATTTCATAATTGGAGAGCTAATAAGTTGTGATTGGAATGTTG
TCTTTAAACAAATCCAACAAGAGACAAACTCCATCGCACACTCGTTGGCTGGTACAATGAAGGAA
GCATCGGTTGGTACTCAGATATTTCATAATGCCCCCTCTTTACTCAATCATCTTGTCAGAGTGGA
TAGCATGTCTAAGTGTTCGAATCTGTTATTTCTTATTTCAAACTAATTAAAAAGTGAGATATGAC
ATTTTTATTAATATTTATATGTAAATTCTAAAAAAATT
Found at i:26893554 original size:32 final size:30
Alignment explanation
Indices: 26893490--26893561 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 30
26893480 GTCTCTTTTC
* *
26893490 TTTTTTGGTCACCCAACTATCAATTTTTTT
1 TTTTTTGGTCACCCAACTATCAATTATGTT
*
26893520 TTTAATTTGGTCACCCAACTAATCGA-TATGTT
1 TTT--TTTGGTCACCCAACT-ATCAATTATGTT
26893552 TTTTTTGGTC
1 TTTTTTGGTC
26893562 CATTTCTGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
30 10 0.28
32 22 0.61
33 4 0.11
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.50
Consensus pattern (30 bp):
TTTTTTGGTCACCCAACTATCAATTATGTT
Found at i:26901063 original size:17 final size:16
Alignment explanation
Indices: 26901035--26901087 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
26901025 TTTGGTTCGC
26901035 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26901051 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
26901068 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26901084 TGTA
1 TGTA
26901088 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:26901152 original size:44 final size:45
Alignment explanation
Indices: 26901068--26901158 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
26901058 GGATTAGAGG
* * *
26901068 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
26901113 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
26901157 TG
1 TG
26901159 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:26901344 original size:18 final size:17
Alignment explanation
Indices: 26901323--26901357 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26901313 TTATTATTAA
*
26901323 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26901341 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26901358 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26901514 original size:38 final size:38
Alignment explanation
Indices: 26901459--26901755 Score: 101
Period size: 39 Copynumber: 7.5 Consensus size: 38
26901449 TTTAATTAAA
*
26901459 ATATATAATTTAATGAAATTCTTAATAATTAATATTCTT
1 ATAT-TAATTTACTGAAATTCTTAATAATTAATATTCTT
* *
26901498 ATATTAATTTACTGAAA-TC---ATAATTTATGATACTGT
1 ATATTAATTTACTGAAATTCTTAATAATTAAT-ATTCT-T
* * * * * * *
26901534 AAAATATAAATTAAC--ATAATTATTATTAAATATATTTTAATT
1 ---ATATTAATTTACTGA-AATTCTTAATAATTA-ATATT-CTT
*
26901576 AAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTT
1 --A-TAT-TAATTTACTGAAATTCTTAATAATTAATATTCTT
* * ***
26901618 ATATTAATTTACTGAAA-TCATAAT-ATATGATACTGTAAA
1 ATATTAATTTACTGAAATTCTTAATAAT-TAATA-T-TCTT
* * * * ***
26901657 ATATAAATTAACAT-AATTATTATTAAATATATT-TTAATTAAA
1 ATATTAATTTAC-TGAA--ATTCTT-AATA-ATTAAT-ATTCTT
*
26901699 ATATATAATTTAATGAAATTCTTAATAATTAATATTCTT
1 ATAT-TAATTTACTGAAATTCTTAATAATTAATATTCTT
26901738 ATATTAATTTACTGAAAT
1 ATATTAATTTACTGAAAT
26901756 CATAATATAT
Statistics
Matches: 188, Mismatches: 40, Indels: 61
0.65 0.14 0.21
Matches are distributed among these distances:
34 8 0.04
35 4 0.02
36 3 0.02
37 13 0.07
38 40 0.21
39 41 0.22
40 7 0.04
41 9 0.05
42 22 0.12
43 24 0.13
44 14 0.07
45 3 0.02
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.45
Consensus pattern (38 bp):
ATATTAATTTACTGAAATTCTTAATAATTAATATTCTT
Found at i:26901519 original size:120 final size:120
Alignment explanation
Indices: 26901306--26901928 Score: 1210
Period size: 120 Copynumber: 5.2 Consensus size: 120
26901296 ATCATATTTA
*
26901306 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
26901371 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
26901426 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
*
26901491 TATTCTTATATTAATTTACTGAAATCATAATTTATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
26901546 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
26901611 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
26901666 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
26901731 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
26901786 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
26901851 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
26901906 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
26901929 AACTTGAAAA
Statistics
Matches: 498, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 498 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:26903390 original size:18 final size:18
Alignment explanation
Indices: 26903367--26903441 Score: 105
Period size: 18 Copynumber: 4.2 Consensus size: 18
26903357 ACCGTTTACG
26903367 GTACTATTCACGTATACA
1 GTACTATTCACGTATACA
*
26903385 GTACTATTCACGTATACG
1 GTACTATTCACGTATACA
* * *
26903403 GCACTATTCATGTATACG
1 GTACTATTCACGTATACA
*
26903421 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
26903439 GTA
1 GTA
26903442 GTTAGGATTG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.33
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:26925501 original size:21 final size:21
Alignment explanation
Indices: 26925475--26925517 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
26925465 GGTTCGCTGT
* *
26925475 ATTGGATTAGCGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
26925496 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
26925517 A
1 A
26925518 ATAGAGGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.02, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:26925517 original size:16 final size:16
Alignment explanation
Indices: 26925498--26925530 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26925488 TGTATTGGAT
*
26925498 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
26925514 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
26925530 T
1 T
26925531 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:26925575 original size:45 final size:44
Alignment explanation
Indices: 26925509--26925603 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
26925499 GGATTAGAGG
* *
26925509 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
26925554 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
26925598 TGTAAT
1 TGTAAT
26925604 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:26925786 original size:18 final size:17
Alignment explanation
Indices: 26925765--26925799 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26925755 TTATTATTTA
*
26925765 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26925783 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26925800 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26925793 original size:28 final size:27
Alignment explanation
Indices: 26925723--26925795 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
26925713 TTTATTATCA
*
26925723 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
26925751 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
26925778 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
26925796 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:26925898 original size:25 final size:25
Alignment explanation
Indices: 26925869--26925935 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 25
26925859 TAATATCAAT
26925869 AATAAATAATTTAATCATA-TTTAAA
1 AATAAATAATTTAAT-ATATTTTAAA
* *
26925894 CAT-AATTATTATAAATATATTTTAAA
1 AATAAATAATT-T-AATATATTTTAAA
*
26925920 AATATATAATTTAATA
1 AATAAATAATTTAATA
26925936 AAATTCTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
24 6 0.18
25 10 0.30
26 12 0.36
27 5 0.15
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (25 bp):
AATAAATAATTTAATATATTTTAAA
Found at i:26925986 original size:144 final size:142
Alignment explanation
Indices: 26925690--26926106 Score: 378
Period size: 125 Copynumber: 3.0 Consensus size: 142
26925680 ATTGTTATTG
26925690 TTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAAACATAA
1 TTATTTAAATTTTAATAAGATTA---A-TATC-AAAATAAATAATTTAATCATATTTAAACATAA
** ***
26925755 TTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCA--GAA
61 TTATTA--TAATATATTTT-A--AAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTT
* * ** * *
26925818 ATTTG-TTTTGGT-AAATTATT
121 ATATGAATTTACTCAAATCATA
26925838 TTATTTAAATTTTAATAAGATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTAT
1 TTATTTAAATTTTAATAAGATTAATATCAA-AATAAATAATTTAATCATATTTAAACATAATTAT
26925903 TATAAATATATTTTAAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAAT
65 TAT-AATATATTTTAAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAAT
*
26925968 TTACTCAAACCATA
129 TTACTCAAATCATA
* * * *
26925982 TTA-TTAAA-TATGATACTG-TAAAATAT-AAAATAACATAA-TT-AT--TA-TT-AA-AT-A-T
1 TTATTTAAATTTTAATA-AGAT-TAATATCAAAATAA-ATAATTTAATCATATTTAAACATAATT
*
26926034 A--AT-ATA-A--TT-AAAATATATTATTTAATAAAATTCTTAATAATTAATATTCTTATATGAA
63 ATTATAATATATTTTAAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAA
26926092 TTTACTCAAATCATA
128 TTTACTCAAATCATA
26926107 ATATATGATT
Statistics
Matches: 242, Mismatches: 18, Indels: 41
0.80 0.06 0.14
Matches are distributed among these distances:
125 62 0.26
126 2 0.01
128 1 0.00
129 3 0.01
131 2 0.01
133 2 0.01
134 1 0.00
135 2 0.01
136 2 0.01
137 2 0.01
138 2 0.01
140 37 0.15
141 7 0.03
142 18 0.07
143 27 0.11
144 48 0.20
145 1 0.00
148 23 0.10
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.45
Consensus pattern (142 bp):
TTATTTAAATTTTAATAAGATTAATATCAAAATAAATAATTTAATCATATTTAAACATAATTATT
ATAATATATTTTAAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTT
ACTCAAATCATA
Found at i:26926127 original size:17 final size:16
Alignment explanation
Indices: 26926105--26926151 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
26926095 ACTCAAATCA
26926105 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
26926122 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
26926136 TAAATATATGATTTAA
1 T-AATATATGATTTAA
26926152 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:26926152 original size:17 final size:17
Alignment explanation
Indices: 26926124--26926157 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26926114 ATTATAACTA
*
26926124 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
26926141 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
26926158 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:26926300 original size:93 final size:91
Alignment explanation
Indices: 26926190--26926383 Score: 284
Period size: 92 Copynumber: 2.1 Consensus size: 91
26926180 GATTATAGTT
* *
26926190 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTA-ATATAATTAT-ATAATAATATATAATTTC
* *
26926253 ATAAAATTCTTGATAATAAAAATTTTCTTA
63 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
26926283 TATGAATTTATACAATTTAAAATAATTAATATTAATATAATTATATAGTGATATATAATTTCATA
1 TATGAATTTATACAATTTAAAATAATTAATATTAATATAATTATATAATAATATATAATTTCATA
26926348 AAATTCTTAATAATAAAATGTTCTTA
66 AAATTCTTAATAATAAAATGTTCTTA
26926374 TATGAATTTA
1 TATGAATTTA
26926384 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 21 0.23
92 40 0.43
93 29 0.31
94 3 0.03
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (91 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAATATAATTATATAATAATATATAATTTCATA
AAATTCTTAATAATAAAATGTTCTTA
Found at i:26927797 original size:11 final size:11
Alignment explanation
Indices: 26927783--26927809 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
26927773 AAAAATAAAT
26927783 ACAAAAGTTTC
1 ACAAAAGTTTC
26927794 ACAAAAGTTTC
1 ACAAAAGTTTC
26927805 ACAAA
1 ACAAA
26927810 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:26944273 original size:21 final size:21
Alignment explanation
Indices: 26944230--26944275 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
26944220 GACCCTTTTT
* * *
26944230 ATATTATGCAACATCAGCTAC
1 ATATTATGCAACATAAACAAC
*
26944251 ATATTATGCAACCTAAACAAC
1 ATATTATGCAACATAAACAAC
26944272 ATAT
1 ATAT
26944276 ATCATGCTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (21 bp):
ATATTATGCAACATAAACAAC
Found at i:26945833 original size:3 final size:3
Alignment explanation
Indices: 26945819--26945852 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
26945809 CGTCAATGCC
*
26945819 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
26945853 CCTGGGATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:26946236 original size:18 final size:18
Alignment explanation
Indices: 26946213--26946248 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
26946203 TTGGTACCTC
26946213 AATTTAGT-TTTAATATTT
1 AATTTAGTATTTAA-ATTT
26946231 AATTTAGTATTTAAATTT
1 AATTTAGTATTTAAATTT
26946249 TTTTACCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (18 bp):
AATTTAGTATTTAAATTT
Found at i:26947240 original size:24 final size:26
Alignment explanation
Indices: 26947198--26947254 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 26
26947188 TATGTACATG
26947198 TATATTATTTTAAACGAATATTTTCC
1 TATATTATTTTAAACGAATATTTTCC
* *
26947224 TATATT-TTTT-AATGAATATTTTCA
1 TATATTATTTTAAACGAATATTTTCC
26947248 TAT-TTAT
1 TATATTAT
26947255 ATGTATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 2 0.07
24 16 0.57
25 4 0.14
26 6 0.21
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (26 bp):
TATATTATTTTAAACGAATATTTTCC
Found at i:26960680 original size:94 final size:94
Alignment explanation
Indices: 26960519--26960702 Score: 314
Period size: 94 Copynumber: 2.0 Consensus size: 94
26960509 GTGTGGAGGA
*
26960519 AGCATTGAAGGATACAAATTGGTCAAGCCCACAATGCTTCATTTGTTTTTCTTTTTGGACCACTA
1 AGCATTGAAGGATACAAATTGGTCAAGCCCACAATACTTCATTTGTTTTTCTTTTTGGACCACTA
* *
26960584 AACTGCTTTTACATGTGAAAAGTCAGATT
66 AACTCCTTTTACATATGAAAAGTCAGATT
* **
26960613 AGCATTGAAGGATGCAAATTGGTCAAGCCCGTAATACTTCATTTGTTTTTCTTTTTGGACCACTA
1 AGCATTGAAGGATACAAATTGGTCAAGCCCACAATACTTCATTTGTTTTTCTTTTTGGACCACTA
26960678 AACTCCTTTTACATATGAAAAGTCA
66 AACTCCTTTTACATATGAAAAGTCA
26960703 AATTGGCTTG
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 84 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.35
Consensus pattern (94 bp):
AGCATTGAAGGATACAAATTGGTCAAGCCCACAATACTTCATTTGTTTTTCTTTTTGGACCACTA
AACTCCTTTTACATATGAAAAGTCAGATT
Found at i:26965668 original size:23 final size:23
Alignment explanation
Indices: 26965642--26965731 Score: 67
Period size: 23 Copynumber: 3.9 Consensus size: 23
26965632 GAGCATTTGA
*
26965642 CACTTCGATGCAATTCATTCTAG
1 CACTTCGGTGCAATTCATTCTAG
* * ** *
26965665 CACTTTGTTGCAATTTGTTCTGG
1 CACTTCGGTGCAATTCATTCTAG
* **
26965688 TACTAT-GGTGTGATTCATTCTAG
1 CACT-TCGGTGCAATTCATTCTAG
26965711 CACTTCGGTGC-ATTACATTCT
1 CACTTCGGTGCAATT-CATTCT
26965732 GTGGAATGTA
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
22 4 0.08
23 45 0.90
24 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.41
Consensus pattern (23 bp):
CACTTCGGTGCAATTCATTCTAG
Found at i:26966676 original size:42 final size:42
Alignment explanation
Indices: 26966616--26966696 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
26966606 TAGTGTGCAA
26966616 AACACTAGGGGAAAATTACTCTAATTACATGTCCAATGTTGC
1 AACACTAGGGGAAAATTACTCTAATTACATGTCCAATGTTGC
* *
26966658 AACACTAGGGGCAGATTACTCTAATTACATGTCCAATGT
1 AACACTAGGGGAAAATTACTCTAATTACATGTCCAATGT
26966697 CATGACACCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (42 bp):
AACACTAGGGGAAAATTACTCTAATTACATGTCCAATGTTGC
Found at i:26970784 original size:40 final size:39
Alignment explanation
Indices: 26970684--26970799 Score: 117
Period size: 40 Copynumber: 2.9 Consensus size: 39
26970674 CCTTCTCAAG
* *
26970684 AATTAAAAGTGAATAGGATCTATTCCTAATTCACTAAAAGA
1 AATT-AAAGTGAATAGGATTTATT-CTGATTCACTAAAAGA
* *
26970725 AATTAAAGTGAATATGATTTATTCGTGATTCACTAGAA-A
1 AATTAAAGTGAATAGGATTTATTC-TGATTCACTAAAAGA
* * *
26970764 TATATAAAGTGGATAGGATTTGTTTCTGATTCACTA
1 AAT-TAAAGTGAATAGGATTT-ATTCTGATTCACTA
26970800 TGGTAACTCA
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
39 4 0.06
40 53 0.83
41 7 0.11
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (39 bp):
AATTAAAGTGAATAGGATTTATTCTGATTCACTAAAAGA
Found at i:26978372 original size:36 final size:36
Alignment explanation
Indices: 26978319--26978602 Score: 166
Period size: 36 Copynumber: 7.7 Consensus size: 36
26978309 TCATTATCTC
* * *
26978319 TCAG-AACAATTATTTATTCAGTAACAGTCAGTTCT
1 TCAGTAACAATCAATTATTCAGTAACAGTCAGTTAT
* * * **
26978354 TCGGTAACAATCAATTATTCAATAATAACCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAGTCAGTTAT
* * *
26978390 TCAGTATCGATCAATTGATCGGTTATCCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATT-A-----T-T-CAGTAACAGTCAGTTAT
* *
26978434 TCAGTAA-AATCAGA-TATTCAGTAACAATTAAGTTAT
1 TCAGTAACAATCA-ATTATTCAGTAAC-AGTCAGTTAT
* * * *
26978470 TCAGTAGCAGTC-ATTCATTCAGTGACAATCAGTTAT
1 TCAGTAACAATCAATT-ATTCAGTAACAGTCAGTTAT
** * *
26978506 TCAGTAATGATCAATTATTCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAGTCAGTTAT
* * * *
26978542 TCAGTAACAGTCTAA-TATCCAGTAACAGTTAATTA-
1 TCAGTAACAATC-AATTATTCAGTAACAGTCAGTTAT
* *
26978577 TCTGGTAACAGTCAATTATTCAGTAA
1 TC-AGTAACAATCAATTATTCAGTAA
26978603 TAATCAATTA
Statistics
Matches: 188, Mismatches: 43, Indels: 35
0.71 0.16 0.13
Matches are distributed among these distances:
35 15 0.08
36 127 0.68
37 19 0.10
42 2 0.01
43 6 0.03
44 19 0.10
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAGTAACAGTCAGTTAT
Found at i:26978438 original size:18 final size:18
Alignment explanation
Indices: 26978412--26978614 Score: 157
Period size: 18 Copynumber: 11.3 Consensus size: 18
26978402 AATTGATCGG
*
26978412 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
*
26978430 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
* *
26978448 -TATTCAGTAACAATTAA
1 TTATTCAGTAACAGTCAA
*
26978465 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAGTCAA
* * *
26978483 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAA
*
26978502 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * *
26978520 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
26978538 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTC-AA
* *
26978557 -TATCCAGTAACAGTTAA
1 TTATTCAGTAACAGTCAA
*
26978574 TTA-TCTGGTAACAGTCAA
1 TTATTC-AGTAACAGTCAA
* *
26978592 TTATTCAGTAATAATCAA
1 TTATTCAGTAACAGTCAA
26978610 TTATT
1 TTATT
26978615 TTATACTTTT
Statistics
Matches: 145, Mismatches: 28, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
17 20 0.14
18 108 0.74
19 17 0.12
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:26978809 original size:47 final size:47
Alignment explanation
Indices: 26978739--26978847 Score: 166
Period size: 47 Copynumber: 2.3 Consensus size: 47
26978729 GTAACAATAG
* * *
26978739 CAGTACGGTACACAGGGTGCCTCATCGGAACAAATCCGGAACAGTAA
1 CAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGAAACAGTAA
*
26978786 CAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGAAATAGTAA
1 CAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGAAACAGTAA
26978833 CAGTAACGGTA-ACAG
1 CAGT-ACGGTACACAG
26978848 TAACAATATC
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
47 51 0.89
48 6 0.11
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.16
Consensus pattern (47 bp):
CAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGAAACAGTAA
Found at i:26978895 original size:12 final size:12
Alignment explanation
Indices: 26978878--26978902 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26978868 AATACCGAAT
26978878 CGGTAACAGTAA
1 CGGTAACAGTAA
26978890 CGGTAACAGTAA
1 CGGTAACAGTAA
26978902 C
1 C
26978903 AGTAGTCGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:26979075 original size:20 final size:21
Alignment explanation
Indices: 26979027--26979075 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
26979017 CACTTTTCAG
26979027 TTTTCAATTAATTCATATTTT
1 TTTTCAATTAATTCATATTTT
**
26979048 AATT-AATTAATT-ATATTTT
1 TTTTCAATTAATTCATATTTT
26979067 TTTTCAATT
1 TTTTCAATT
26979076 CAATATAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 9 0.39
20 12 0.52
21 2 0.09
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTCAATTAATTCATATTTT
Found at i:26981154 original size:42 final size:42
Alignment explanation
Indices: 26981108--26981191 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
26981098 TGGTTTATTT
*
26981108 ACTTATTTAGTCCTTTCAGTTTTCTTTATTCTATAATTAAAC
1 ACTTATTTAGTCCTTTCAATTTTCTTTATTCTATAATTAAAC
26981150 ACTTATTTAGTCCTTTCAATTTTCTTTATTCTATAATTAAAC
1 ACTTATTTAGTCCTTTCAATTTTCTTTATTCTATAATTAAAC
26981192 TTTCACACTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.27, C:0.17, G:0.04, T:0.52
Consensus pattern (42 bp):
ACTTATTTAGTCCTTTCAATTTTCTTTATTCTATAATTAAAC
Found at i:26984955 original size:14 final size:13
Alignment explanation
Indices: 26984929--26984968 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
26984919 GTTTAAAGAC
*
26984929 TTTTATTTATTAT
1 TTTTATTTTTTAT
26984942 TTTTATGTTTTTAT
1 TTTTAT-TTTTTAT
26984956 TTTTATCTTTTTA
1 TTTTAT-TTTTTA
26984969 AAACTACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:26984987 original size:5 final size:5
Alignment explanation
Indices: 26984977--26985021 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
26984967 TAAAACTACT
* *
26984977 TTTTA TTTTA TTTTA TTTTA TTTTTC TTTTC TTTTAA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTT-A TTTTA TTT
26985022 CATCATTAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
5 28 0.78
6 8 0.22
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:26984992 original size:10 final size:10
Alignment explanation
Indices: 26984977--26985021 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 10
26984967 TAAAACTACT
26984977 TTTTATTTTA
1 TTTTATTTTA
26984987 TTTTATTTTA
1 TTTTATTTTA
* *
26984997 TTTTTCTTTTC
1 -TTTTATTTTA
26985008 TTTTAATTTTA
1 TTTT-ATTTTA
26985019 TTT
1 TTT
26985022 CATCATTAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
10 14 0.48
11 15 0.52
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTATTTTA
Found at i:26985001 original size:16 final size:15
Alignment explanation
Indices: 26984977--26985021 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
26984967 TAAAACTACT
26984977 TTTTATTTTATTTTA
1 TTTTATTTTATTTTA
* *
26984992 TTTTATTTTTCTTTTC
1 TTTTA-TTTTATTTTA
26985008 TTTTAATTTTATTT
1 TTTT-ATTTTATTT
26985022 CATCATTAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 5 0.20
16 19 0.76
17 1 0.04
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTATTTTATTTTA
Found at i:26990168 original size:13 final size:13
Alignment explanation
Indices: 26990144--26990178 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
26990134 TCTAATTAAA
26990144 ATAATAAATATAAT
1 ATAAT-AATATAAT
*
26990158 ATACTAATATAAT
1 ATAATAATATAAT
26990171 ATAATAAT
1 ATAATAAT
26990179 CTAACTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATAATATAAT
Found at i:26992131 original size:2 final size:2
Alignment explanation
Indices: 26992124--26992158 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26992114 TCAAGTTTGA
26992124 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
26992159 TTGGGGGGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:27008856 original size:38 final size:38
Alignment explanation
Indices: 27008709--27008874 Score: 127
Period size: 38 Copynumber: 4.3 Consensus size: 38
27008699 CGAGGTATAA
* * * *
27008709 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGA-TTT
*** * * *
27008748 AAACTTAGATATAATACCAGCACTAGGCCTGCGGAATTT
1 -AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* * *
27008787 AACTCGAATATAATACCAGCACGAAGTCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* * * *
27008825 AACCCGGATATAATTCTAGCA-TATAGCCTGCGGGTCTTT
1 AACCCGGATATAATACCAGCACGA-AGCCTGCGGG-ATTT
27008864 AAGCCCGGATA
1 AA-CCCGGATA
27008875 CACATCAAAT
Statistics
Matches: 99, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
37 1 0.01
38 57 0.58
39 8 0.08
40 33 0.33
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:27013884 original size:18 final size:18
Alignment explanation
Indices: 27013861--27013902 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
27013851 TCAAATTAAC
*
27013861 TTTTTATATATTTTAAAT
1 TTTTTATAAATTTTAAAT
27013879 TTTTTATAAATTTTAAAT
1 TTTTTATAAATTTTAAAT
27013897 TATTTT
1 T-TTTT
27013903 TTGCATAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTATAAATTTTAAAT
Found at i:27030005 original size:2 final size:2
Alignment explanation
Indices: 27029998--27030023 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
27029988 CTTAATTATT
27029998 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
27030024 AAGAAACAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:27031067 original size:19 final size:18
Alignment explanation
Indices: 27031045--27031110 Score: 82
Period size: 19 Copynumber: 3.7 Consensus size: 18
27031035 AAGCTCTAAA
27031045 AAATTATAAAAGTTATTAG
1 AAATTATAAAA-TTATTAG
*
27031064 AAATTGTAAAA-TATTA-
1 AAATTATAAAATTATTAG
27031080 AAATTATAAAAATTATTAG
1 AAATTAT-AAAATTATTAG
*
27031099 AAATTGTAAAAT
1 AAATTATAAAAT
27031111 GTTTTAAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
16 6 0.15
17 9 0.22
18 10 0.24
19 16 0.39
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (18 bp):
AAATTATAAAATTATTAG
Found at i:27031084 original size:35 final size:35
Alignment explanation
Indices: 27031044--27031110 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
27031034 AAAGCTCTAA
*
27031044 AAAATTATAAAAGTTATTAGAAATTGTAAAATATT
1 AAAATTATAAAAATTATTAGAAATTGTAAAATATT
27031079 AAAATTATAAAAATTATTAGAAATTGTAAAAT
1 AAAATTATAAAAATTATTAGAAATTGTAAAAT
27031111 GTTTTAAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (35 bp):
AAAATTATAAAAATTATTAGAAATTGTAAAATATT
Found at i:27031285 original size:21 final size:21
Alignment explanation
Indices: 27031244--27031287 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
27031234 AAATTGTATT
27031244 TTAAAACTATTTTAATAAAAA
1 TTAAAACTATTTTAATAAAAA
* *
27031265 TTAACACT-TTTTATATCAAAA
1 TTAAAACTATTTTA-ATAAAAA
27031286 TT
1 TT
27031288 TTATTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (21 bp):
TTAAAACTATTTTAATAAAAA
Found at i:27032994 original size:16 final size:16
Alignment explanation
Indices: 27032970--27033011 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
27032960 TTTGGTTCGC
* *
27032970 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
27032986 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
27033002 TGTAATGGAA
1 TGTAATGGAA
27033012 AAGCTGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:27033277 original size:18 final size:17
Alignment explanation
Indices: 27033256--27033290 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
27033246 TTATTATTAA
*
27033256 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
27033274 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
27033291 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:27033427 original size:16 final size:16
Alignment explanation
Indices: 27033390--27033431 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
27033380 TTAATCATAT
*
27033390 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
27033406 TT-AAATATATTATAA
1 TTAAAATATATTATAA
27033421 TTAAAATATAT
1 TTAAAATATAT
27033432 AATTTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:27033428 original size:154 final size:156
Alignment explanation
Indices: 27033143--27033440 Score: 537
Period size: 154 Copynumber: 1.9 Consensus size: 156
27033133 TAGAATACCC
27033143 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-TA
*
27033208 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
65 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
27033273 TATATAATTTAATAAAATTCTTAATAA
130 TATATAATTTAATAAAATTCTTAATAA
* * *
27033300 TTAGCATAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-A-
1 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
27033363 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
66 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
27033428 ATATAATTTAATA
131 ATATAATTTAATA
27033441 TGAATTTACT
Statistics
Matches: 137, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
154 77 0.56
155 1 0.01
157 59 0.43
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
ATATAATTTAATAAAATTCTTAATAA
Found at i:27033438 original size:14 final size:15
Alignment explanation
Indices: 27033399--27033533 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
27033389 TTTAAACATA
*
27033399 ATTATTATTAAATAT
1 ATTATAATTAAATAT
27033414 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
27033428 A-TATAATTTAATAT
1 ATTATAATTAAATAT
*
27033442 GAATTTACTCAAATCATAATAT
1 --A-TTA-T--AATTA-AATAT
* *
27033464 ATGATACTGTAAA-AT
1 ATTATAAT-TAAATAT
27033479 A-TA-AATTAACATA-
1 ATTATAATTAA-ATAT
*
27033492 ATTATTATTAAATAT
1 ATTATAATTAAATAT
27033507 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
27033521 A-TATAATTTAATA
1 ATTATAATTAAATA
27033534 AAATTCTTAA
Statistics
Matches: 92, Mismatches: 12, Indels: 33
0.67 0.09 0.24
Matches are distributed among these distances:
12 3 0.03
13 22 0.24
14 16 0.17
15 30 0.33
16 5 0.05
17 1 0.01
18 3 0.03
19 3 0.03
20 1 0.01
21 3 0.03
22 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:27033497 original size:154 final size:155
Alignment explanation
Indices: 27033182--27033497 Score: 401
Period size: 154 Copynumber: 2.0 Consensus size: 155
27033172 ATTGTTATTG
27033182 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTA-TATTATCAATAATAAATAATTTAATCATATTTAAACATAAT
* *
27033247 TATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCATAAATT
65 TATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA-TAGCATAAATA
** * * *** **
27033312 TGTTTTGGTAAATTATTATTGTTATTG
129 TGTACTGGTAAAATATAATTAACATAA
27033339 TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAACATAATT
1 TTATTTAAATTTTAATAAGATTATATTATCAATAATAAATAATTTAATCATATTTAAACATAATT
* * *
27033402 ATTATTAAATATATTATAATTAAAATATATAATTTAATATGAA-T-TTACTCAA-ATCATAATAT
66 ATTATTAAATATATTATAATTAAAATATATAATTTAATA-AAATTCTTAAT-AATAGCATAA-AT
27033464 ATGATACT-GTAAAATATAAATTAACATAA
128 ATG-TACTGGTAAAATAT-AATTAACATAA
27033493 TTATT
1 TTATT
27033498 ATTAAATATA
Statistics
Matches: 140, Mismatches: 14, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
152 6 0.04
153 16 0.11
154 92 0.66
155 3 0.02
157 23 0.16
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (155 bp):
TTATTTAAATTTTAATAAGATTATATTATCAATAATAAATAATTTAATCATATTTAAACATAATT
ATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATAGCATAAATATG
TACTGGTAAAATATAATTAACATAA
Found at i:27033548 original size:44 final size:43
Alignment explanation
Indices: 27033459--27033549 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
27033449 CTCAAATCAT
* * *
27033459 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
* * *
27033502 AATATATTATAAT-TAAAATATATAATTTAATAAAATTCTTAATA
1 AATATATGATAATGTAAAATATA-AA-TTAACAAAATTATTAATA
27033546 AATA
1 AATA
27033550 AAATTCTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.22
43 13 0.32
44 18 0.45
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (43 bp):
AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
Found at i:27033574 original size:120 final size:119
Alignment explanation
Indices: 27033439--27033657 Score: 345
Period size: 120 Copynumber: 1.8 Consensus size: 119
27033429 TATAATTTAA
* * *
27033439 TATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-TT-AACATAATTATTATTA
1 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATTTCAA-ATAATTAATATTA
27033502 AATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
64 AATATGATT-TAATT-AAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
27033559 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
1 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
*
27033624 TATGATTTAATTAAATATATGATTTAATAAAATT
66 TATGATTTAATTAAATATATAATTTAATAAAATT
27033658 TAAAATTATT
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
119 24 0.26
120 63 0.68
121 5 0.05
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (119 bp):
TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
TATGATTTAATTAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
Found at i:27033638 original size:15 final size:15
Alignment explanation
Indices: 27033618--27033656 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
27033608 AATAATTAAT
27033618 ATTAAATATGATTTA
1 ATTAAATATGATTTA
27033633 ATTAAATATATGATTTA
1 ATT-AA-ATATGATTTA
*
27033650 ATAAAAT
1 ATTAAAT
27033657 TTAAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (15 bp):
ATTAAATATGATTTA
Found at i:27033643 original size:17 final size:17
Alignment explanation
Indices: 27033623--27033656 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
27033613 TTAATATTAA
*
27033623 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
27033640 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
27033657 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:27033799 original size:93 final size:92
Alignment explanation
Indices: 27033689--27033883 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
27033679 GATTATAGTT
* * *
27033689 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
27033752 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
27033782 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
27033847 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
27033874 TATGAATTTA
1 TATGAATTTA
27033884 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:27035298 original size:11 final size:11
Alignment explanation
Indices: 27035284--27035310 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
27035274 AAAAATCAAT
27035284 ACAAAAGTTTC
1 ACAAAAGTTTC
27035295 ACAAAAGTTTC
1 ACAAAAGTTTC
27035306 ACAAA
1 ACAAA
27035311 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Done.