Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 96 of 318
Found at i:31801203 original size:21 final size:21
Alignment explanation
Indices: 31801179--31801225 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
31801169 TATCTAATTA
*
31801179 ATTTAGAGTTTAAAGTTTATG
1 ATTTAGAGTTTAAAGTTTAGG
* *
31801200 ATTTAGTGTTTATAGTTTAGG
1 ATTTAGAGTTTAAAGTTTAGG
31801221 ATTTA
1 ATTTA
31801226 ATGATTCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.51
Consensus pattern (21 bp):
ATTTAGAGTTTAAAGTTTAGG
Found at i:31801506 original size:110 final size:110
Alignment explanation
Indices: 31801313--31801532 Score: 386
Period size: 110 Copynumber: 2.0 Consensus size: 110
31801303 GACAGATTAA
* *
31801313 ATGAAGACGAGAGTGAAGGAAAGACCAATGTTACTAAAGAACAGTTTAGTCTGTGAATCAATTAA
1 ATGAAGACGAGAGTGAAGGAAAGACCAATGCTACTAAAGAACAGTTTAGTCAGTGAATCAATTAA
*
31801378 CCGATGTCAACTAGAACAGAGCTATTTTTAATCAAGTTTTTTTTT
66 CCGATGTCAACCAGAACAGAGCTATTTTTAATCAAGTTTTTTTTT
* * *
31801423 ATGAAGACGGGAGTGAAGGAGAGACCAATGCTACTAAAGAACGGTTTAGTCAGTGAATCAATTAA
1 ATGAAGACGAGAGTGAAGGAAAGACCAATGCTACTAAAGAACAGTTTAGTCAGTGAATCAATTAA
31801488 CCGATGTCAACCAGAACAGAGCTATTTTTAATCAAGTTTTTTTTT
66 CCGATGTCAACCAGAACAGAGCTATTTTTAATCAAGTTTTTTTTT
31801533 TCACCCTTAT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
110 104 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (110 bp):
ATGAAGACGAGAGTGAAGGAAAGACCAATGCTACTAAAGAACAGTTTAGTCAGTGAATCAATTAA
CCGATGTCAACCAGAACAGAGCTATTTTTAATCAAGTTTTTTTTT
Found at i:31805172 original size:35 final size:35
Alignment explanation
Indices: 31805126--31805573 Score: 142
Period size: 35 Copynumber: 12.5 Consensus size: 35
31805116 TTAAACGTAC
* *
31805126 TTATTCCAACCTTTTTAAGATTGTCTTAAATGGGT
1 TTATTCCAACCTTTTTAAGGTTGTCTTAAACGGGT
* * * *
31805161 TTA-TCCTAACCTTTTAAAGGCTGCCTTAGACGGGT
1 TTATTCC-AACCTTTTTAAGGTTGTCTTAAACGGGT
** *
31805196 TTATTCCAACCTTTTTAAAGGTTGTCTTAGGCAAGG-
1 TTATTCCAACCTTTTT-AAGGTTGTCTTAAAC-GGGT
* * * * *
31805232 -TATGTCTTAACCTTTTTAAAGTTGTATTAGACGGCT
1 TTAT-TC-CAACCTTTTTAAGGTTGTCTTAAACGGGT
*
31805268 TTA-TCTCAACCTTTTTAAAGGTTGCCTTAGACAC-GGT
1 TTATTC-CAACCTTTTT-AAGGTTGTCTTA-A-ACGGGT
* * * * * *
31805305 CTATCCCAGCCTTTTTAGGGTTG-CTTTAGACGAGT
1 TTATTCCAACCTTTTTAAGGTTGTC-TTAAACGGGT
* * * **
31805340 CTA-TCCTAACCTTTTTTAAGGGTTGCCTTAGACAATGT
1 TTATTCC-AACC-TTTTTAA-GGTTGTCTTAAAC-GGGT
* * * *
31805378 CTATCCCAACCTTTTTAAGGTTGCCTTAAACGAGT
1 TTATTCCAACCTTTTTAAGGTTGTCTTAAACGGGT
* * * * ** *
31805413 CTATCCCAACCTTTTGCAAGAATTACCTTAGATA-AGGT
1 TTATTCCAACCTTTT-TAAG-GTTGTCTTA-A-ACGGGT
* * * *
31805451 TTATCCCAACCTTTTTGAGGTTGCCTTAAACGAGT
1 TTATTCCAACCTTTTTAAGGTTGTCTTAAACGGGT
* * * * * * **
31805486 TGA-TCTTAACCTTTTTTAAGGGTTGCCTCAGACTGAC
1 TTATTC-CAACC-TTTTTAA-GGTTGTCTTAAACGGGT
* * * *
31805523 CTATCCCAACCTTTTTAAGGTTGTCTTATATGGGT
1 TTATTCCAACCTTTTTAAGGTTGTCTTAAACGGGT
*
31805558 CTA-TCCTAACCTTTTT
1 TTATTCC-AACCTTTTT
31805574 CAAAGATTGG
Statistics
Matches: 311, Mismatches: 72, Indels: 60
0.70 0.16 0.14
Matches are distributed among these distances:
34 11 0.04
35 109 0.35
36 88 0.28
37 69 0.22
38 31 0.10
39 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (35 bp):
TTATTCCAACCTTTTTAAGGTTGTCTTAAACGGGT
Found at i:31805380 original size:73 final size:73
Alignment explanation
Indices: 31805162--31805611 Score: 376
Period size: 73 Copynumber: 6.2 Consensus size: 73
31805152 TAAATGGGTT
* * * * * * * *
31805162 TATCCTAACCTTTTAAAGGCTGCCTTAGACGGGTTTATTCC-AACC-TTTTTAAAGGTTGTCTTA
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCTA-TCCTAACCTTTTTTAAGGGTTGCCTTA
* *
31805225 GGCAAGGTA
65 GACAAGGTC
* ** * ** * * *
31805234 TGTCTTAACCTTTTTAAAGTTGTATTAGACG-GCTTTAT-CTCAACC-TTTTTAAAGGTTGCCTT
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGAG-TCTATCCT-AACCTTTTTTAAGGGTTGCCTT
*
31805296 AGACACGGTC
64 AGACAAGGTC
* * * *
31805306 TATCCCAGCCTTTTTAGGGTTGCTTTAGACGAGTCTATCCTAACCTTTTTTAAGGGTTGCCTTAG
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCTATCCTAACCTTTTTTAAGGGTTGCCTTAG
*
31805371 ACAATGTC
66 ACAAGGTC
* ** ** *
31805379 TATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCTATCCCAACCTTTTGCAAGAATTACCTTAG
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCTATCCTAACCTTTTTTAAGGGTTGCCTTAG
* *
31805444 ATAAGGTT
66 ACAAGGTC
* * *
31805452 TATCCCAACCTTTTTGAGGTTGCCTTAAACGAGT-TGATCTTAACCTTTTTTAAGGGTTGCCTCA
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCT-ATCCTAACCTTTTTTAAGGGTTGCCTTA
* **
31805516 GAC-TGACC
65 GACAAGGTC
* * * * * * *
31805524 TATCCCAACCTTTTTAAGGTTGTCTTATATGGGTCTATCCTAACCTTTTTCAAAGATTGGCCTT-
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCTATCCTAACCTTTTTTAAGGGTT-GCCTTA
*
31805588 GACTAGGTC
65 GACAAGGTC
31805597 TATCCCAACCTTTTT
1 TATCCCAACCTTTTT
31805612 TAAAGGTCGG
Statistics
Matches: 305, Mismatches: 63, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
70 1 0.00
71 2 0.01
72 138 0.45
73 164 0.54
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (73 bp):
TATCCCAACCTTTTTAAGGTTGCCTTAAACGAGTCTATCCTAACCTTTTTTAAGGGTTGCCTTAG
ACAAGGTC
Found at i:31805392 original size:145 final size:141
Alignment explanation
Indices: 31805240--31805611 Score: 401
Period size: 145 Copynumber: 2.6 Consensus size: 141
31805230 GGTATGTCTT
* * * * *
31805240 AACCTTTTTAAAGTTGTATTAGACGGCTTTATCTCAACCTTTTTAAAGGTTGCCTTAGACACGGT
1 AACCTTTTTAAGGTTGTCTTAAACGG-TCTATC-CAACCTTTTTAAAGATTGCCTTAGACA-GGT
* * *
31805305 CTATCCCAGCCTTTTT-AGGGTTGCTTTAGACGAGTCT-ATCCTAACCTTTTTTAAGGGTTGCCT
63 CTATCCCAACCTTTTTGA-GGTTGCCTTAAACGAGT-TGATCCTAACCTTTTTTAAGGGTTGCCT
* *
31805368 TAGACAATG-TCTATCCC
126 CAGAC--TGACCTATCCC
* ** * *
31805385 AACCTTTTTAAGGTTGCCTTAAACGAGTCTATCCCAACCTTTTGCAAGAATTACCTTAGATAAGG
1 AACCTTTTTAAGGTTGTCTTAAACG-GTCTAT-CCAACCTTTTTAAAG-ATTGCCTTAGA-CAGG
* *
31805450 TTTATCCCAACCTTTTTGAGGTTGCCTTAAACGAGTTGATCTTAACCTTTTTTAAGGGTTGCCTC
62 TCTATCCCAACCTTTTTGAGGTTGCCTTAAACGAGTTGATCCTAACCTTTTTTAAGGGTTGCCTC
31805515 AGACTGACCTATCCC
127 AGACTGACCTATCCC
**
31805530 AACCTTTTTAAGGTTGTCTTATATGGGTCTATCCTAACCTTTTTCAAAGATTGGCCTT-GACTAG
1 AACCTTTTTAAGGTTGTCTTA-AACGGTCTATCC-AACCTTTTT-AAAGATT-GCCTTAGAC-AG
31805594 GTCTATCCCAACCTTTTT
61 GTCTATCCCAACCTTTTT
31805612 TAAAGGTCGG
Statistics
Matches: 190, Mismatches: 25, Indels: 24
0.79 0.10 0.10
Matches are distributed among these distances:
144 4 0.02
145 103 0.54
146 81 0.43
147 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (141 bp):
AACCTTTTTAAGGTTGTCTTAAACGGTCTATCCAACCTTTTTAAAGATTGCCTTAGACAGGTCTA
TCCCAACCTTTTTGAGGTTGCCTTAAACGAGTTGATCCTAACCTTTTTTAAGGGTTGCCTCAGAC
TGACCTATCCC
Found at i:31805628 original size:38 final size:38
Alignment explanation
Indices: 31805555--31805630 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
31805545 GTCTTATATG
* * *
31805555 GGTCTATCCTAACCTTTTTCAAAGATTGGCCTTGACTA
1 GGTCTATCCCAACCTTTTTCAAAGATCGGCATTGACTA
* *
31805593 GGTCTATCCCAACCTTTTTTAAAGGTCGGCATTGACTA
1 GGTCTATCCCAACCTTTTTCAAAGATCGGCATTGACTA
31805631 AGCCTTTCAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (38 bp):
GGTCTATCCCAACCTTTTTCAAAGATCGGCATTGACTA
Found at i:31805644 original size:38 final size:38
Alignment explanation
Indices: 31805565--31805644 Score: 88
Period size: 38 Copynumber: 2.1 Consensus size: 38
31805555 GGTCTATCCT
* * * * *
31805565 AACCTTTTTCAAAGATTGGCCTTGACTAGGTCTATCCC
1 AACCTTTTTCAAAGATCGGCATTGACTAAGCCTATCAC
* * *
31805603 AACCTTTTTTAAAGGTCGGCATTGACTAAGCCTTTCAC
1 AACCTTTTTCAAAGATCGGCATTGACTAAGCCTATCAC
31805641 AACC
1 AACC
31805645 CTTTAATAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (38 bp):
AACCTTTTTCAAAGATCGGCATTGACTAAGCCTATCAC
Found at i:31806380 original size:44 final size:44
Alignment explanation
Indices: 31806225--31806524 Score: 178
Period size: 44 Copynumber: 6.8 Consensus size: 44
31806215 TAGCAAACAC
* **
31806225 TATCTCCCTGAAGTTGTAGTGGAGCA-AGTTGAAGATAGCGAATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGA-TTGAAGTTATAG-ATCT
* * * *
31806270 TATCTTCCTGAAGTTGTAGTGGAGCAGATTAAAGTCATAGACCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTATAGATCT
* * *
31806314 TATCTCCTTGAAGTTGCAATGGAGCAGATTGAAGTTATAGATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTATAGATCT
* * * * * * *
31806358 TATCTCCCTGATGTTGT-GATGGAGTAGATCGAAGATAGCAAATAT
1 TATCTCCCTGAAGTTGTAG-TGGAGCAGATTGAAGTTA-TAGATCT
* * * * * * * ** *
31806403 TATCTCTCTAAAGTTTTAATAGAACAGATTAAAGCCATA-AGCCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTATAGA-TCT
* * * * *
31806447 TATCTCCCTGAAGTTGCAGCGGAGCAGGTTGAAGATACCA-ATCT
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTA-TAGATCT
* * * *
31806491 TGTCACCCTAAAGTTACT-GTGGAGCAGATTGAAG
1 TATCTCCCTGAAGTT-GTAGTGGAGCAGATTGAAG
31806525 CTACTAATTC
Statistics
Matches: 188, Mismatches: 60, Indels: 15
0.71 0.23 0.06
Matches are distributed among these distances:
43 1 0.01
44 124 0.66
45 62 0.33
46 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTATAGATCT
Found at i:31806417 original size:133 final size:133
Alignment explanation
Indices: 31806225--31806480 Score: 313
Period size: 133 Copynumber: 1.9 Consensus size: 133
31806215 TAGCAAACAC
* * * * *
31806225 TATCTCCCTGAAGTTGTAGTGGAGCAAGTTGAAGATAGCGAATCTTATCTTCCTGAAGTTGTAGT
1 TATCTCCCTGAAGTTGTAGTGGAGCAAGTCGAAGATAGCAAATATTATCTTCCTAAAGTTGTAAT
* * * * *
31806290 GGAGCAGATTAAAGTCAT-AGACCTTATCTCCTTGAAGTTGCAATGGAGCAGATTGAAGTTATAG
66 AGAACAGATTAAAGCCATAAG-CCTTATCTCCCTGAAGTTGCAACGGAGCAGATTGAAGTTATAG
31806354 ATCT
130 ATCT
* * *
31806358 TATCTCCCTGATGTTGT-GATGGAG-TAGATCGAAGATAGCAAATATTATC-TCTCTAAAGTTTT
1 TATCTCCCTGAAGTTGTAG-TGGAGCAAG-TCGAAGATAGCAAATATTATCTTC-CTAAAGTTGT
* *
31806420 AATAGAACAGATTAAAGCCATAAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGGTTGAAG
63 AATAGAACAGATTAAAGCCATAAGCCTTATCTCCCTGAAGTTGCAACGGAGCAGATTGAAG
31806481 ATACCAATCT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
132 5 0.05
133 97 0.93
134 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (133 bp):
TATCTCCCTGAAGTTGTAGTGGAGCAAGTCGAAGATAGCAAATATTATCTTCCTAAAGTTGTAAT
AGAACAGATTAAAGCCATAAGCCTTATCTCCCTGAAGTTGCAACGGAGCAGATTGAAGTTATAGA
TCT
Found at i:31808768 original size:18 final size:18
Alignment explanation
Indices: 31808740--31808842 Score: 107
Period size: 18 Copynumber: 5.7 Consensus size: 18
31808730 GTACTGGATG
*
31808740 ACTGACTGTTACTGAATA
1 ACTGATTGTTACTGAATA
* *
31808758 ATTGATCGTTACTGAATA
1 ACTGATTGTTACTGAATA
* **
31808776 ACTGATTGCTACTGAGCA
1 ACTGATTGTTACTGAATA
*
31808794 AATGATTGTTACTGAATA
1 ACTGATTGTTACTGAATA
* *
31808812 ACTAATTGCTACTGAATA
1 ACTGATTGTTACTGAATA
* *
31808830 ATTGAATGTTACT
1 ACTGATTGTTACT
31808843 AAATGAAGCT
Statistics
Matches: 66, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.36
Consensus pattern (18 bp):
ACTGATTGTTACTGAATA
Found at i:31808840 original size:36 final size:36
Alignment explanation
Indices: 31808749--31808842 Score: 127
Period size: 36 Copynumber: 2.6 Consensus size: 36
31808739 GACTGACTGT
*
31808749 TACTGAATAATTG-ATCGTTACTGAATAACTGATTGC
1 TACTGAATAATTGAAT-GTTACTGAATAACTAATTGC
** * *
31808785 TACTGAGCAAATGATTGTTACTGAATAACTAATTGC
1 TACTGAATAATTGAATGTTACTGAATAACTAATTGC
31808821 TACTGAATAATTGAATGTTACT
1 TACTGAATAATTGAATGTTACT
31808843 AAATGAAGCT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
36 47 0.98
37 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (36 bp):
TACTGAATAATTGAATGTTACTGAATAACTAATTGC
Found at i:31810666 original size:50 final size:50
Alignment explanation
Indices: 31810612--31810711 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
31810602 ACAAACAACC
31810612 AAGAAACAACAAAGCAATCGAGAAAAAAACAAAACATGCTAAAGTCCTTT
1 AAGAAACAACAAAGCAATCGAGAAAAAAACAAAACATGCTAAAGTCCTTT
31810662 AAGAAACAACAAAGCAATCGAGAAAAAAACAAAACATGCTAAAGTCCTTT
1 AAGAAACAACAAAGCAATCGAGAAAAAAACAAAACATGCTAAAGTCCTTT
31810712 TTTTCCTTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.56, C:0.18, G:0.12, T:0.14
Consensus pattern (50 bp):
AAGAAACAACAAAGCAATCGAGAAAAAAACAAAACATGCTAAAGTCCTTT
Found at i:31811501 original size:18 final size:20
Alignment explanation
Indices: 31811459--31811506 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
31811449 TTATTCTTAT
31811459 TATTATTATCATTACTACTGC
1 TATTATTATCATTACTAC-GC
*
31811480 TATTATTATTATTACTA-G-
1 TATTATTATCATTACTACGC
31811498 TATTATTAT
1 TATTATTAT
31811507 ATTTCTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 9 0.35
19 1 0.04
21 16 0.62
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.54
Consensus pattern (20 bp):
TATTATTATCATTACTACGC
Found at i:31811862 original size:16 final size:16
Alignment explanation
Indices: 31811836--31811869 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
31811826 CTTTTTATTA
31811836 ATTTTTTACGCAT-TT
1 ATTTTTTACGCATGTT
31811851 ATTTTATTACGCATGTT
1 ATTTT-TTACGCATGTT
31811868 AT
1 AT
31811870 CATTGTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 8 0.47
17 4 0.24
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (16 bp):
ATTTTTTACGCATGTT
Found at i:31814855 original size:41 final size:41
Alignment explanation
Indices: 31814798--31814883 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
31814788 TATGAGAATG
**
31814798 TGTTTACTTCTTATCAAGTTTGTTTTAAACATTATCTACTA
1 TGTTTACTTCTTATCAAGTTTGTCGTAAACATTATCTACTA
31814839 TGTTTACTTCTTATCAAGTTTGTCGTAAACATTATCTACTA
1 TGTTTACTTCTTATCAAGTTTGTCGTAAACATTATCTACTA
31814880 TGTT
1 TGTT
31814884 GATTTGGTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.26, C:0.15, G:0.09, T:0.50
Consensus pattern (41 bp):
TGTTTACTTCTTATCAAGTTTGTCGTAAACATTATCTACTA
Found at i:31816139 original size:6 final size:7
Alignment explanation
Indices: 31816117--31816142 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
31816107 AGAAAGAGTA
31816117 TTTAATT
1 TTTAATT
31816124 TTTAATT
1 TTTAATT
31816131 TTTAATT
1 TTTAATT
31816138 TTTAA
1 TTTAA
31816143 ATATAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTAATT
Found at i:31830874 original size:14 final size:15
Alignment explanation
Indices: 31830852--31830928 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
31830842 CAATCAAACA
31830852 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
31830866 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
31830881 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
31830901 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
31830915 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
31830929 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:31830893 original size:20 final size:20
Alignment explanation
Indices: 31830868--31830907 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
31830858 AATATTTTCC
*
31830868 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
31830888 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
31830908 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:31830913 original size:34 final size:35
Alignment explanation
Indices: 31830856--31830922 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
31830846 CAAACACCAG
*
31830856 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
31830891 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
31830923 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:31831220 original size:29 final size:30
Alignment explanation
Indices: 31831184--31831242 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
31831174 TTACAGAACT
* *
31831184 AAAATACAGG-GCTAAACTTAT-AATAAAA
1 AAAATACAGGAGCCAAACTGATAAATAAAA
31831212 AAAAGTACAGGAGCCAAACTGATAAATAAAA
1 AAAA-TACAGGAGCCAAACTGATAAATAAAA
31831243 TAATATAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 4 0.15
29 6 0.23
30 9 0.35
31 7 0.27
ACGTcount: A:0.58, C:0.12, G:0.14, T:0.17
Consensus pattern (30 bp):
AAAATACAGGAGCCAAACTGATAAATAAAA
Found at i:31834896 original size:47 final size:45
Alignment explanation
Indices: 31834828--31834915 Score: 124
Period size: 47 Copynumber: 1.9 Consensus size: 45
31834818 CTAATTAAAA
* *
31834828 AAAAGTGAAATTTAGATAATAATTTGTGGATTAAACTTTTTTTTAAT
1 AAAAGTGAAATTTAAATAATAATTTGAGGATT-AA-TTTTTTTTAAT
31834875 AAAAGT-ATAATTTAAATAATAATTTGAGGATTAATTTTTTT
1 AAAAGTGA-AATTTAAATAATAATTTGAGGATTAATTTTTTT
31834916 AAAATAAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
45 7 0.18
46 3 0.08
47 28 0.74
ACGTcount: A:0.42, C:0.01, G:0.11, T:0.45
Consensus pattern (45 bp):
AAAAGTGAAATTTAAATAATAATTTGAGGATTAATTTTTTTTAAT
Found at i:31838579 original size:50 final size:50
Alignment explanation
Indices: 31838504--31838605 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
31838494 AACATATATA
31838504 TAGATCCAAGTGAAGGATTTTTATGACATGAACGAGGCTAAGCCTTTTTT
1 TAGATCCAAGTGAAGGATTTTTATGACATGAACGAGGCTAAGCCTTTTTT
31838554 TAGATCCAAGTGAAGGATTTTTATGACATGAACGAGGCTAAGCCTTTTTT
1 TAGATCCAAGTGAAGGATTTTTATGACATGAACGAGGCTAAGCCTTTTTT
31838604 TA
1 TA
31838606 TGGGGCAACT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (50 bp):
TAGATCCAAGTGAAGGATTTTTATGACATGAACGAGGCTAAGCCTTTTTT
Found at i:31839760 original size:22 final size:22
Alignment explanation
Indices: 31839734--31839776 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
31839724 TCGAAGTTAA
*
31839734 TAGATGATCCATACATAAATAG
1 TAGATGATCCATAAATAAATAG
*
31839756 TAGATGATCTATAAATAAATA
1 TAGATGATCCATAAATAAATA
31839777 CTCTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (22 bp):
TAGATGATCCATAAATAAATAG
Found at i:31840338 original size:108 final size:108
Alignment explanation
Indices: 31840158--31840366 Score: 246
Period size: 108 Copynumber: 1.9 Consensus size: 108
31840148 TTTGGGTTAA
* ** * **
31840158 TATTTGGTACGTTGGTAGTGAACTTTTTTTATTTCACAAATAGTCTTACAAAATTATCATGTGTC
1 TATTTGGTACATTGACAGTGAACTTTTTTTATTTCACAAACAACCTTACAAAATTATCATGTGTC
* * * *
31840223 CGCTTTTTTTAAAAATATTTTGTT-ATATTTTACTATGGATGAG
66 CG-ATTTTTAAAAAATATTTTCTTAACATTTTACTATGGATGAG
*
31840266 TATTTGGTACATTGACAGTGTAACTTTTTTTATTTCACAAACAACCTTA-AAATTTGA-CATGTG
1 TATTTGGTACATTGACAGTG-AACTTTTTTTATTTCACAAACAACCTTACAAAATT-ATCATGTG
*
31840329 TCTC-ATTTTTAAAAAATTTTTTCTTAACATTTTACTAT
64 TC-CGATTTTTAAAAAATATTTTCTTAACATTTTACTAT
31840367 TATAGGACAC
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
107 17 0.20
108 41 0.48
109 27 0.32
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.47
Consensus pattern (108 bp):
TATTTGGTACATTGACAGTGAACTTTTTTTATTTCACAAACAACCTTACAAAATTATCATGTGTC
CGATTTTTAAAAAATATTTTCTTAACATTTTACTATGGATGAG
Found at i:31844102 original size:21 final size:19
Alignment explanation
Indices: 31844045--31844106 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
31844035 AAAAAATTGT
* **
31844045 ATAATTTTTATTCTTTTGTA
1 ATAATTTTTAAT-TTTTAAA
31844065 ATAATTTTTAATTTTTAAA
1 ATAATTTTTAATTTTTAAA
*
31844084 ATATTTTTTGAATTTTTTAAA
1 ATAATTTTT-AA-TTTTTAAA
31844105 AT
1 AT
31844107 TTAAAAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
19 13 0.36
20 13 0.36
21 10 0.28
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (19 bp):
ATAATTTTTAATTTTTAAA
Found at i:31851781 original size:20 final size:20
Alignment explanation
Indices: 31851758--31851823 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
31851748 GCTGAAAGGT
31851758 AAAGCAAATTATAAATCGCA
1 AAAGCAAATTATAAATCGCA
* **
31851778 AAAGCAGCAA-CATCAAA--GGT
1 AAAGCA--AATTAT-AAATCGCA
31851798 AAAGCAAATTATAAATCGCA
1 AAAGCAAATTATAAATCGCA
31851818 AAAGCA
1 AAAGCA
31851824 GCAACATCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 12
0.65 0.12 0.23
Matches are distributed among these distances:
18 5 0.15
19 2 0.06
20 20 0.59
21 2 0.06
22 5 0.15
ACGTcount: A:0.55, C:0.17, G:0.14, T:0.15
Consensus pattern (20 bp):
AAAGCAAATTATAAATCGCA
Found at i:31851796 original size:40 final size:40
Alignment explanation
Indices: 31851752--31851832 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
31851742 AAAATTGCTG
31851752 AAAGGTAAAGCAAATTATAAATCGCAAAAGCAGCAACATC
1 AAAGGTAAAGCAAATTATAAATCGCAAAAGCAGCAACATC
31851792 AAAGGTAAAGCAAATTATAAATCGCAAAAGCAGCAACATC
1 AAAGGTAAAGCAAATTATAAATCGCAAAAGCAGCAACATC
31851832 A
1 A
31851833 TATTTATTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.53, C:0.17, G:0.15, T:0.15
Consensus pattern (40 bp):
AAAGGTAAAGCAAATTATAAATCGCAAAAGCAGCAACATC
Found at i:31854824 original size:31 final size:31
Alignment explanation
Indices: 31854762--31854821 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
31854752 CAATGTTCAA
* *
31854762 TTAATTTTTTATATTTATCTTTATTTAAATT
1 TTAATTATTTATATTTATATTTATTTAAATT
31854793 TTAATTATTTAT-TTTATAATTATATTTAA
1 TTAATTATTTATATTTAT-ATT-TATTTAA
31854822 TTTCTCTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.20
31 13 0.52
32 7 0.28
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (31 bp):
TTAATTATTTATATTTATATTTATTTAAATT
Found at i:31857213 original size:16 final size:16
Alignment explanation
Indices: 31857168--31857215 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
31857158 CCGGCCGGAA
*
31857168 CCCCTCTCTCCTTTCT
1 CCCCTCTCTCTTTTCT
31857184 CCCCTCTCTCTTTTCT
1 CCCCTCTCTCTTTTCT
* *
31857200 CCCTTCTCTTTTTTCT
1 CCCCTCTCTCTTTTCT
31857216 TTTTTTCTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (16 bp):
CCCCTCTCTCTTTTCT
Found at i:31857866 original size:21 final size:20
Alignment explanation
Indices: 31857815--31857886 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
31857805 ATACTTTAAA
*
31857815 TATTATATTTT-ATATGTAT
1 TATTATATTTTAATTTGTAT
* *
31857834 CA-TATTTTTTAATGTTGTAT
1 TATTATATTTTAAT-TTGTAT
*
31857854 TATTATATTTTAATATTATAT
1 TATTATATTTTAAT-TTGTAT
31857875 TATATATATTTT
1 TAT-TATATTTT
31857887 CTTATTATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
18 7 0.17
19 3 0.07
20 6 0.14
21 18 0.43
22 8 0.19
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (20 bp):
TATTATATTTTAATTTGTAT
Found at i:31857882 original size:22 final size:22
Alignment explanation
Indices: 31857824--31857899 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
31857814 ATATTATATT
* *
31857824 TTATATGTATCATATTTTTTAATG
1 TTATAT-TAT-ATATATTTTAATA
*
31857848 TTGTATTAT-TATATTTTAATA
1 TTATATTATATATATTTTAATA
**
31857869 TTATATTATATATATTTTCTTA
1 TTATATTATATATATTTTAATA
31857891 TTATATTAT
1 TTATATTAT
31857900 GTACATATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 18 0.40
22 19 0.42
23 3 0.07
24 5 0.11
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.62
Consensus pattern (22 bp):
TTATATTATATATATTTTAATA
Found at i:31858000 original size:21 final size:24
Alignment explanation
Indices: 31857963--31858019 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
31857953 TTACTAGTTA
31857963 TATATTATTTATATATT-TCC-ATG
1 TATA-TATTTATATATTGTCCTATG
31857986 TATATATTT-TATATTGTCCTATG
1 TATATATTTATATATTGTCCTATG
*
31858009 TACATATTTAT
1 TATATATTTAT
31858020 GTGGTGTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.20
22 8 0.27
23 15 0.50
24 1 0.03
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.56
Consensus pattern (24 bp):
TATATATTTATATATTGTCCTATG
Found at i:31858215 original size:28 final size:28
Alignment explanation
Indices: 31858172--31858233 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
31858162 TTATCTTATG
*
31858172 TATATATTCTTAAATACTAT-TATATGTA
1 TATATATTCTTAAATACCATAT-TATGTA
* *
31858200 TATATATTTTTTAATACCATATTATGTA
1 TATATATTCTTAAATACCATATTATGTA
31858228 TATATA
1 TATATA
31858234 GTAGTGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 29 0.97
29 1 0.03
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (28 bp):
TATATATTCTTAAATACCATATTATGTA
Found at i:31879487 original size:74 final size:73
Alignment explanation
Indices: 31879404--31879700 Score: 247
Period size: 74 Copynumber: 4.1 Consensus size: 73
31879394 TCATTTTTGT
*
31879404 TTTCAAAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCCGAGGTATTTT
1 TTTC-AAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTT
*
31879469 CAAATTCTAC
64 CAAATTCTGC
** ** *
31879479 TTTCAAAAAAATCAACTCATATCACGAGAGGTGAGTTGAG-CT-TTGGCTTACG-TGTTGAGTCA
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGC--ACGCTG-AG-GT-A
* *
31879541 CTTTCAATTTCTG-
60 TTTTCAAATTCTGC
** * *
31879554 TTT----TTATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC-
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTCA
*
31879614 AATTGCTGT
66 AATT-CTGC
* * *
31879623 TTGTC-AAAAATCAACTCATAATTGTGAGAGGTGAGTTGAGCCTC-AGGGCACACTGAGGTAGTT
1 TT-TCAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGA-GGCACGCTGAGGTATTT
*
31879686 TCAATTTCTGC
63 TCAAATTCTGC
31879697 TTTC
1 TTTC
31879701 CGATTTCTGC
Statistics
Matches: 177, Mismatches: 28, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
67 3 0.02
68 8 0.05
69 4 0.02
70 32 0.18
71 4 0.02
72 6 0.03
73 15 0.08
74 66 0.37
75 28 0.16
76 11 0.06
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (73 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTCA
AATTCTGC
Found at i:31879840 original size:87 final size:87
Alignment explanation
Indices: 31879609--31879867 Score: 329
Period size: 87 Copynumber: 2.9 Consensus size: 87
31879599 CGCTGAGGTA
* * * *
31879609 TTTTCAATTGCTGTTTGTCAAAAATCAACTCATAATTGTGAGAGGTGAGTTGAGCCTCAGGGCAC
1 TTTTCAATTTCTGTTTTTAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
* * *
31879674 ACTGAGGTAGTTTCAATTTCTGC
65 GCTGAGGTATTTTCAATTTCCGC
* * * * * *
31879697 TTTCCGATTTCTGCTTTTCAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTG-TTTT-TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
* *
31879762 CGCTGAGGTATTTTCGATTTCCGT
64 CGCTGAGGTATTTTCAATTTCCGC
* * *
31879786 TTTTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTTTCAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
31879851 CTGAGGTATTTTCAATT
66 CTGAGGTATTTTCAATT
31879868 ACTGTTTGTC
Statistics
Matches: 144, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
87 58 0.40
88 14 0.10
89 58 0.40
90 14 0.10
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.35
Consensus pattern (87 bp):
TTTTCAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
CTGAGGTATTTTCAATTTCCGC
Found at i:31879922 original size:74 final size:73
Alignment explanation
Indices: 31879786--31879942 Score: 253
Period size: 74 Copynumber: 2.1 Consensus size: 73
31879776 CGATTTCCGT
* * *
31879786 TTTTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTTTCAATTTATGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
31879851 CTGAGGTA
66 CTGAGGTA
31879859 TTTTCAA-TTACTGTTTGTCAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
1 TTTTCAATTTA-TGTTTGTCAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
31879923 CGCTGAGGTA
64 CGCTGAGGTA
*
31879933 TTTTCGATTT
1 TTTTCAATTT
31879943 CCGTTTTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
72 3 0.04
73 27 0.35
74 45 0.58
75 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTATGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
CTGAGGTA
Found at i:31879993 original size:160 final size:162
Alignment explanation
Indices: 31879718--31880173 Score: 569
Period size: 160 Copynumber: 2.7 Consensus size: 162
31879708 TGCTTTTCAA
*
31879718 AAAAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCGATTTC
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCGATTTC
* *
31879783 CGTTTTTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGC
66 CGTTTTTCAATTTATG-TTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
* *
31879848 ACGCTGAGGTATTTTCAATTACTG-TT-TG-TC
130 ACGCTGAGGTATTCTCAATTAATGTTTATGTTC
* *
31879878 AAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTT
1 AAAAATCAACTCAT-ATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCGATTT
31879943 CCGTTTTTCAATTTATGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
65 CCGTTTTTCAATTTATGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
*
31880008 ACGCTGAGTTATTCTCAATTAATGTTTTTCAATTTATGCTTTTC
130 ACGCTGAGGTATTCTCAATTAATG--------TTTATG---TTC
* * * * **
31880052 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGTCACATGCCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTATTTTCGATT
* * * * *
31880117 TCTGTTTTGCAAATTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
64 TCCGTTTTTCAATTTATGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
31880174 TCTTTGCTCA
Statistics
Matches: 257, Mismatches: 21, Indels: 21
0.86 0.07 0.07
Matches are distributed among these distances:
160 81 0.32
161 64 0.25
169 2 0.01
170 2 0.01
173 23 0.09
174 23 0.09
175 62 0.24
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (162 bp):
AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCGATTTC
CGTTTTTCAATTTATGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
CGCTGAGGTATTCTCAATTAATGTTTATGTTC
Found at i:31880011 original size:86 final size:88
Alignment explanation
Indices: 31879859--31880173 Score: 397
Period size: 86 Copynumber: 3.6 Consensus size: 88
31879849 CGCTGAGGTA
*
31879859 TTTTCAA-TTACTGTTTGTCAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGG-C
1 TTTTCAATTTA-TGTTTTTCAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGAC
* *
31879922 ACGCTGAGGTATTTTCGATTTCCGT
64 ACGCTGAGGTATTTTCAATTTCTGT
31879947 TTTTCAATTTATGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACAC
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGACAC
* * **
31880010 GCTGAGTTATTCTCAATTAATGT
66 GCTGAGGTATTTTCAATTTCTGT
* * **
31880033 TTTTCAATTTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGTCACA
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGGACA
* * **
31880098 TGCCGAGGTATTTTCAAAATCTGT
65 CGCTGAGGTATTTTCAATTTCTGT
* * * *
31880122 TTTGCAAATTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
31880174 TCTTTGCTCA
Statistics
Matches: 198, Mismatches: 24, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
85 3 0.02
86 62 0.31
87 49 0.25
88 51 0.26
89 33 0.17
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (88 bp):
TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGACAC
GCTGAGGTATTTTCAATTTCTGT
Found at i:31880134 original size:14 final size:13
Alignment explanation
Indices: 31880108--31880143 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
31880098 TGCCGAGGTA
31880108 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
31880121 TTTTGCAAATTCTG
1 TTTT-CAAAATCTG
31880135 TTTTCAAAA
1 TTTTCAAAA
31880144 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:31880170 original size:175 final size:174
Alignment explanation
Indices: 31879859--31880173 Score: 449
Period size: 175 Copynumber: 1.8 Consensus size: 174
31879849 CGCTGAGGTA
* *
31879859 TTTTCAATTACTGTTTGTCAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
1 TTTTCAATTACTGTTTGTCAAAAATCAACTCATAATTACGAGAGGTGAGTTGAGCCTCAAGGCAC
* * ** * * *
31879924 GCTGAGGTATTTTCGATTTCCGTTTTTCAATTTATGTTTTTCAAAATCAACTCATATTGCGAGAG
66 GCCGAGGTATTTTCAAAATCCGTTTTGCAAATTATGTTTTTCAAAATCAACTCATATTGCGAGAA
31879989 GTGAGTTGAGCCTCGGGACACGCTGAGTTATTCTCAATTAATGT
131 GTGAGTTGAGCCTCGGGACACGCTGAGTTATTCTCAATTAATGT
*
31880033 TTTTCAATTTA-TGCTTT-TCAAAAATCAACTCAT-ATTACGAGAGGTGAGTTGAGCCTCAAGTC
1 TTTTCAA-TTACTG-TTTGTCAAAAATCAACTCATAATTACGAGAGGTGAGTTGAGCCTCAAGGC
* *
31880095 ACATGCCGAGGTATTTTCAAAATCTGTTTTGCAAATTCTG-TTTTCAAAAATCAACTCATATTGC
64 AC--GCCGAGGTATTTTCAAAATCCGTTTTGCAAATTATGTTTTTC-AAAATCAACTCATATTGC
31880159 GAGAAGTGAGTTGAG
126 GAGAAGTGAGTTGAG
31880174 TCTTTGCTCA
Statistics
Matches: 124, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
173 28 0.23
174 30 0.24
175 66 0.53
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (174 bp):
TTTTCAATTACTGTTTGTCAAAAATCAACTCATAATTACGAGAGGTGAGTTGAGCCTCAAGGCAC
GCCGAGGTATTTTCAAAATCCGTTTTGCAAATTATGTTTTTCAAAATCAACTCATATTGCGAGAA
GTGAGTTGAGCCTCGGGACACGCTGAGTTATTCTCAATTAATGT
Found at i:31881502 original size:14 final size:15
Alignment explanation
Indices: 31881463--31881506 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 15
31881453 CCGGCCGGAA
31881463 CCCTTCTCTCCTTTCTC
1 CCCTTCTCT--TTTCTC
31881480 CCCTCTCTCTTTTCT-
1 CCCT-TCTCTTTTCTC
31881495 CCCTTCTCTTTT
1 CCCTTCTCTTTT
31881507 TTCTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 8 0.31
15 4 0.15
16 5 0.19
17 4 0.15
18 5 0.19
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (15 bp):
CCCTTCTCTTTTCTC
Found at i:31881508 original size:16 final size:16
Alignment explanation
Indices: 31881463--31881510 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
31881453 CCGGCCGGAA
*
31881463 CCCTTCTCTCCTTTCT
1 CCCTTCTCTCTTTTCT
*
31881479 CCCCTCTCTCTTTTCT
1 CCCTTCTCTCTTTTCT
*
31881495 CCCTTCTCTTTTTTCT
1 CCCTTCTCTCTTTTCT
31881511 TTTTTTTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (16 bp):
CCCTTCTCTCTTTTCT
Found at i:31882194 original size:47 final size:48
Alignment explanation
Indices: 31882065--31882195 Score: 126
Period size: 47 Copynumber: 2.8 Consensus size: 48
31882055 TATACTTGGG
* * *
31882065 TATTATATTATATATATTTATATGTCATA-TATACT-TTAAATATTATA
1 TATTATATTATATATATTT-TTTTTCATATTATATTATTAAATATTATA
* * * * * * *
31882112 TTTTATATGTAT-CATATTTTTTTTAATGTTGTATTATTATATTTTA-A
1 TATTATAT-TATATATATTTTTTTTCATATTATATTATTAAATATTATA
31882159 TATTATATTATATATATTTTTTTTCATATTATATTAT
1 TATTATATTATATATATTTTTTTTCATATTATATTAT
31882196 GTACATATAT
Statistics
Matches: 65, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
46 8 0.12
47 46 0.71
48 11 0.17
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (48 bp):
TATTATATTATATATATTTTTTTTCATATTATATTATTAAATATTATA
Found at i:31882208 original size:26 final size:26
Alignment explanation
Indices: 31882149--31882218 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
31882139 GTTGTATTAT
* *
31882149 TATATTTTAATATTATATTATATATA
1 TATATTTTCATATTATATTATATACA
* * *
31882175 TTTTTTTTCATATTATATTATGTACA
1 TATATTTTCATATTATATTATATACA
*
31882201 TATATTTTC-TAATATATT
1 TATATTTTCATATTATATT
31882219 TTTTTATATA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 8 0.22
26 28 0.78
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (26 bp):
TATATTTTCATATTATATTATATACA
Found at i:31882298 original size:21 final size:24
Alignment explanation
Indices: 31882261--31882317 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
31882251 TTAGTAGTTA
31882261 TATATTATTTATATATT-TCC-ATG
1 TATA-TATTTATATATTGTCCTATG
31882284 TATATATTT-TATATTGTCCTATG
1 TATATATTTATATATTGTCCTATG
*
31882307 TACATATTTAT
1 TATATATTTAT
31882318 GTGGTGTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.20
22 8 0.27
23 15 0.50
24 1 0.03
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.56
Consensus pattern (24 bp):
TATATATTTATATATTGTCCTATG
Found at i:31882517 original size:28 final size:28
Alignment explanation
Indices: 31882474--31882535 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
31882464 TTATCTTATG
*
31882474 TATATATTCTTAAATACTAT-TATATGTA
1 TATATATTCTTAAATACCATAT-TATGTA
* *
31882502 TATATATTTTTTAATACCATATTATGTA
1 TATATATTCTTAAATACCATATTATGTA
31882530 TATATA
1 TATATA
31882536 GTAGTGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 29 0.97
29 1 0.03
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (28 bp):
TATATATTCTTAAATACCATATTATGTA
Found at i:31882893 original size:16 final size:17
Alignment explanation
Indices: 31882874--31882907 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
31882864 TAATCTTGCA
31882874 TAATTTTATTGTC-TGT
1 TAATTTTATTGTCATGT
31882890 TAATTTTATTGTCATGT
1 TAATTTTATTGTCATGT
31882907 T
1 T
31882908 CATTATTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.62
Consensus pattern (17 bp):
TAATTTTATTGTCATGT
Found at i:31889103 original size:30 final size:27
Alignment explanation
Indices: 31889026--31889104 Score: 85
Period size: 25 Copynumber: 2.9 Consensus size: 27
31889016 TGTAAAATTG
31889026 ATTTAATTAAT-TATATAAAAATAAGTA
1 ATTTAATTAATATATAT-AAAATAAGTA
31889053 ATTTAATTAA-ATA-ATAAAATAA-TA
1 ATTTAATTAATATATATAAAATAAGTA
31889077 TATTTAACTTAATGATATATATAAATAA
1 -ATTTAA-TTAAT-ATATATA-AAATAA
31889105 ATTAATTTCA
Statistics
Matches: 45, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
24 2 0.04
25 13 0.29
26 6 0.13
27 12 0.27
28 3 0.07
29 3 0.07
30 6 0.13
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.41
Consensus pattern (27 bp):
ATTTAATTAATATATATAAAATAAGTA
Found at i:31889559 original size:14 final size:14
Alignment explanation
Indices: 31889540--31889573 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
31889530 GAGAATTTTT
31889540 TCTTTACAACTTTC
1 TCTTTACAACTTTC
31889554 TCTTTACAACTTTC
1 TCTTTACAACTTTC
31889568 TCTTTA
1 TCTTTA
31889574 ATTCAAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (14 bp):
TCTTTACAACTTTC
Found at i:31890323 original size:20 final size:21
Alignment explanation
Indices: 31890285--31890323 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
31890275 ATCAAAATTA
*
31890285 ATTTTCTCAAAAATCATTTAG
1 ATTTTCTCAAAAATAATTTAG
*
31890306 ATTTT-TCAAAATTAATTT
1 ATTTTCTCAAAAATAATTT
31890324 TTCAAGAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.49
Consensus pattern (21 bp):
ATTTTCTCAAAAATAATTTAG
Found at i:31894573 original size:24 final size:24
Alignment explanation
Indices: 31894520--31894575 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
31894510 TTTGTTCGTA
*
31894520 AACATATTCAATTATATGTTCATG
1 AACATGTTCAATTATATGTTCATG
*
31894544 AACATGTTCAATTATATGTTCATT
1 AACATGTTCAATTATATGTTCATG
31894568 AACATGTT
1 AACATGTT
31894576 TGAAATACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (24 bp):
AACATGTTCAATTATATGTTCATG
Found at i:31895053 original size:31 final size:31
Alignment explanation
Indices: 31895018--31895080 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
31895008 AGTATTTTTC
*
31895018 TTCTAATTTTCTTTTTTTCAAATTTTAACAT
1 TTCTAATTTTCTTTTTTTCAAATTTCAACAT
*
31895049 TTCTAATTTTGTTTTTTTCAAATTTCAACAT
1 TTCTAATTTTCTTTTTTTCAAATTTCAACAT
31895080 T
1 T
31895081 GTACTAAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.13, G:0.02, T:0.60
Consensus pattern (31 bp):
TTCTAATTTTCTTTTTTTCAAATTTCAACAT
Found at i:31903000 original size:21 final size:21
Alignment explanation
Indices: 31902974--31903014 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
31902964 ATCTGCTCAA
* *
31902974 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
31902995 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
31903015 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:31908601 original size:6 final size:6
Alignment explanation
Indices: 31908590--31908616 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
31908580 AAATTTACTT
31908590 TTTCTA TTTCTA TTTCTA TTTCTA TTT
1 TTTCTA TTTCTA TTTCTA TTTCTA TTT
31908617 TCACTCACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTCTA
Found at i:31913232 original size:31 final size:31
Alignment explanation
Indices: 31913197--31913258 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
31913187 ATAATGTAAG
31913197 TATATCAGGCCAATTGGACATTCAAATTTGA
1 TATATCAGGCCAATTGGACATTCAAATTTGA
31913228 TATATCAGGCCAATTGGACATTCAAATTTGA
1 TATATCAGGCCAATTGGACATTCAAATTTGA
31913259 AGTTATTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (31 bp):
TATATCAGGCCAATTGGACATTCAAATTTGA
Found at i:31914016 original size:31 final size:31
Alignment explanation
Indices: 31913980--31914040 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
31913970 TCTTTAGGTT
31913980 GATGGATGAATTTTATTCACTCATTTACTTG
1 GATGGATGAATTTTATTCACTCATTTACTTG
31914011 GATGGATGAATTTTATTCACTCATTTACTT
1 GATGGATGAATTTTATTCACTCATTTACTT
31914041 AGGAATGTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (31 bp):
GATGGATGAATTTTATTCACTCATTTACTTG
Found at i:31914843 original size:17 final size:17
Alignment explanation
Indices: 31914823--31914855 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
31914813 AACATATTGT
31914823 ATTTATTTT-ATAATTTG
1 ATTT-TTTTCATAATTTG
31914840 ATTTTTTTCATAATTT
1 ATTTTTTTCATAATTT
31914856 TCTCATTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (17 bp):
ATTTTTTTCATAATTTG
Found at i:31914956 original size:3 final size:3
Alignment explanation
Indices: 31914948--31914974 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
31914938 TTTTTCAGAC
31914948 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
31914975 GTTTTAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:31915663 original size:20 final size:19
Alignment explanation
Indices: 31915638--31915691 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
31915628 ATTTGTGTGC
31915638 TTATTATATTTATAATATAA
1 TTATTATATTT-TAATATAA
* *
31915658 TTATTAATATTTTTATTTAA
1 TTATT-ATATTTTAATATAA
*
31915678 TTATTATATATTAA
1 TTATTATATTTTAA
31915692 AAATAATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 7 0.24
20 16 0.55
21 6 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTATTATATTTTAATATAA
Found at i:31915982 original size:13 final size:13
Alignment explanation
Indices: 31915966--31915992 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
31915956 AAAAAAAAAA
31915966 AAACCAAAAGTCC
1 AAACCAAAAGTCC
31915979 AAACCAAAAGTCC
1 AAACCAAAAGTCC
31915992 A
1 A
31915993 TCAGTCCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.30, G:0.07, T:0.07
Consensus pattern (13 bp):
AAACCAAAAGTCC
Found at i:31918912 original size:17 final size:18
Alignment explanation
Indices: 31918890--31918923 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
31918880 AGTATATTTT
*
31918890 AAAATTTTTAT-TTTATG
1 AAAATTATTATGTTTATG
31918907 AAAATTATTATGTTTAT
1 AAAATTATTATGTTTAT
31918924 TGTGATAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
AAAATTATTATGTTTATG
Found at i:31924947 original size:2 final size:2
Alignment explanation
Indices: 31924940--31924964 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
31924930 AGCTGTTGTA
31924940 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
31924965 AAGGGAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:31929068 original size:26 final size:26
Alignment explanation
Indices: 31929019--31929088 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
31929009 TCAGCATTTT
31929019 CCACGACCCTCAA-GTATTGGACTGC
1 CCACGACCCTCAAGGTATTGGACTGC
*
31929044 CCACGACCTTCAAGGTATTGGACTGC
1 CCACGACCCTCAAGGTATTGGACTGC
*
31929070 CCACGACCCTCTAGGTATT
1 CCACGACCCTCAAGGTATT
31929089 AGGGCTAACA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 12 0.29
26 29 0.71
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (26 bp):
CCACGACCCTCAAGGTATTGGACTGC
Found at i:31933381 original size:31 final size:32
Alignment explanation
Indices: 31933346--31933406 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
31933336 TTCATACTTT
31933346 ATATTTCA-TAACACTGGGCCGAAGCCTTTTC
1 ATATTTCATTAACACTGGGCCGAAGCCTTTTC
** *
31933377 ATATTTCATTATTACTGGGCCGATGCCTTT
1 ATATTTCATTAACACTGGGCCGAAGCCTTT
31933407 ACCGGTATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 8 0.31
32 18 0.69
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (32 bp):
ATATTTCATTAACACTGGGCCGAAGCCTTTTC
Found at i:31933690 original size:24 final size:24
Alignment explanation
Indices: 31933608--31933689 Score: 137
Period size: 24 Copynumber: 3.4 Consensus size: 24
31933598 CTGGAGACCT
*
31933608 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
31933633 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
31933657 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
31933681 AGCCCTTTT
1 AGCCCTTTT
31933690 GTACTTCCTC
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
24 51 0.93
25 4 0.07
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:31933761 original size:9 final size:9
Alignment explanation
Indices: 31933747--31933799 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
31933737 ACATCATGTG
31933747 CATATCATA
1 CATATCATA
31933756 CATATCATGTA
1 CATATCA--TA
31933767 CATATCATA
1 CATATCATA
* *
31933776 CATGTCATGTG
1 CATATCA--TA
31933787 CATATCATA
1 CATATCATA
31933796 CATA
1 CATA
31933800 CCATGTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:31933764 original size:20 final size:20
Alignment explanation
Indices: 31933739--31933805 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
31933729 TTATAAATAC
31933739 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
31933759 ATCATGTACATATCATACAT
1 ATCATGTGCATATCATACAT
*
31933779 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
31933799 ACCATGT
1 ATCATGT
31933806 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:31933768 original size:11 final size:11
Alignment explanation
Indices: 31933739--31933794 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
31933729 TTATAAATAC
*
31933739 ATCATGTGCAT
1 ATCATGTACAT
31933750 ATCA--TACAT
1 ATCATGTACAT
31933759 ATCATGTACAT
1 ATCATGTACAT
31933770 ATCA--TACAT
1 ATCATGTACAT
* *
31933779 GTCATGTGCAT
1 ATCATGTACAT
31933790 ATCAT
1 ATCAT
31933795 ACATACCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:31933874 original size:25 final size:25
Alignment explanation
Indices: 31933842--31933889 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
31933832 ATACCTAAAC
* * *
31933842 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
31933867 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
31933890 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:31937794 original size:20 final size:20
Alignment explanation
Indices: 31937747--31937785 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
31937737 ATACCTTCTA
31937747 AATTTTTATAATATTTTTTC
1 AATTTTTATAATATTTTTTC
31937767 AATTTTTAT-ATATTATTTT
1 AATTTTTATAATATT-TTTT
31937786 GATTTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (20 bp):
AATTTTTATAATATTTTTTC
Found at i:31938122 original size:33 final size:34
Alignment explanation
Indices: 31938085--31938160 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 34
31938075 ATATATTTTT
* *
31938085 AAATATTATATATTATAT-TGATTAAAAA-TATAA
1 AAATATTATATATAATATAT-ATAAAAAAGTATAA
* *
31938118 AAATATCATATATAATATATATAAAAAAGTTTAA
1 AAATATTATATATAATATATATAAAAAAGTATAA
31938152 AAATATTAT
1 AAATATTAT
31938161 TTTCATAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 23 0.64
34 13 0.36
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (34 bp):
AAATATTATATATAATATATATAAAAAAGTATAA
Found at i:31938201 original size:23 final size:25
Alignment explanation
Indices: 31938142--31938202 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 25
31938132 ATATATATAA
* **
31938142 AAAAGTTTAAAAATATTATTTTCAT
1 AAAATTTTAAAAATATTATAATCAT
*
31938167 AAAATTCT-AAAATA-TATAATCAT
1 AAAATTTTAAAAATATTATAATCAT
31938190 -AAATTTTAAAAAT
1 AAAATTTTAAAAAT
31938203 TCAAAATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
22 6 0.20
23 12 0.40
24 6 0.20
25 6 0.20
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (25 bp):
AAAATTTTAAAAATATTATAATCAT
Found at i:31943035 original size:46 final size:46
Alignment explanation
Indices: 31942982--31943106 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
31942972 GAGTAAGCAC
* * *
31942982 CATTGAGATAGCTTC-GACTATGTATTGGCACTTTGTGTGGGAGATT
1 CATTGAGATAGCTTCAG-CTATGTATTGGCACTTCGTGTGCGAAATT
31943028 CATTGAGATAGCTTCAGCTATGTATTGGCACTTCGTGTGCGAAATT
1 CATTGAGATAGCTTCAGCTATGTATTGGCACTTCGTGTGCGAAATT
31943074 CATTGAGATAGCTTCAGCTATGTATTGGCACTT
1 CATTGAGATAGCTTCAGCTATGTATTGGCACTT
31943107 AGGGTGCAAG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
46 74 0.99
47 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (46 bp):
CATTGAGATAGCTTCAGCTATGTATTGGCACTTCGTGTGCGAAATT
Found at i:31956065 original size:53 final size:53
Alignment explanation
Indices: 31955982--31956087 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
31955972 ACTGTTCTTC
31955982 TTGTAATAAAATATTCTGAATTCGTATAATCAAAGTTGAATTTAAAGTGGTAG
1 TTGTAATAAAATATTCTGAATTCGTATAATCAAAGTTGAATTTAAAGTGGTAG
* *
31956035 TTGTAATAAAATATTCTGAATTCGTCTAATCAAAGTTGAATTTGAAGTGGTAG
1 TTGTAATAAAATATTCTGAATTCGTATAATCAAAGTTGAATTTAAAGTGGTAG
31956088 AGGTGCTTCC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (53 bp):
TTGTAATAAAATATTCTGAATTCGTATAATCAAAGTTGAATTTAAAGTGGTAG
Found at i:31960072 original size:15 final size:15
Alignment explanation
Indices: 31960052--31960108 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
31960042 CGATGAATTT
*
31960052 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
31960067 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
31960082 ATTGAAATTATATTG
1 ATTGAAATTATATTG
31960097 ATTG-AATTATAT
1 ATTGAAATTATAT
31960109 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:31960511 original size:23 final size:23
Alignment explanation
Indices: 31960481--31960567 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
31960471 GCTTTACTGA
* *
31960481 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
31960504 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
31960525 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
31960547 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
31960568 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:31967598 original size:13 final size:13
Alignment explanation
Indices: 31967582--31967606 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31967572 GCCCAAGTGG
31967582 GTTGCCCGTGTGA
1 GTTGCCCGTGTGA
31967595 GTTGCCCGTGTG
1 GTTGCCCGTGTG
31967607 GGCCCACATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.24, G:0.40, T:0.32
Consensus pattern (13 bp):
GTTGCCCGTGTGA
Found at i:31968897 original size:14 final size:15
Alignment explanation
Indices: 31968874--31968907 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
31968864 ATATAATGCG
31968874 CACT-ACACACAAA-
1 CACTCACACACAAAT
31968887 CACTCACACACAAAT
1 CACTCACACACAAAT
31968902 CACTCA
1 CACTCA
31968908 GAATCATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.21
14 9 0.47
15 6 0.32
ACGTcount: A:0.47, C:0.41, G:0.00, T:0.12
Consensus pattern (15 bp):
CACTCACACACAAAT
Found at i:31969212 original size:20 final size:20
Alignment explanation
Indices: 31969189--31969226 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31969179 GTGGGGGTCA
31969189 ACACACCCATGTGGAAGGGC
1 ACACACCCATGTGGAAGGGC
* *
31969209 ACACGCCCGTGTGGAAGG
1 ACACACCCATGTGGAAGG
31969227 AAGCATATGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.34, T:0.11
Consensus pattern (20 bp):
ACACACCCATGTGGAAGGGC
Found at i:31974635 original size:24 final size:24
Alignment explanation
Indices: 31974601--31974654 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
31974591 ACTGACCTGG
*
31974601 AATATTATTTATCATTCACCAA-A
1 AATATTATTTATCATCCACCAACA
*
31974624 AAGTATTGTTTATCATCCACCAACA
1 AA-TATTATTTATCATCCACCAACA
31974649 AATATT
1 AATATT
31974655 TAATATGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 22 0.81
25 3 0.11
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.37
Consensus pattern (24 bp):
AATATTATTTATCATCCACCAACA
Found at i:31986172 original size:24 final size:24
Alignment explanation
Indices: 31986128--31986174 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
31986118 TATAGTATTA
*
31986128 GAAATATATACATGGGATAATATG
1 GAAATATATACATGAGATAATATG
*
31986152 GAAATATGTACAT-AGAGTAATAT
1 GAAATATATACATGAGA-TAATAT
31986175 ATACAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.30
Consensus pattern (24 bp):
GAAATATATACATGAGATAATATG
Found at i:31986204 original size:21 final size:21
Alignment explanation
Indices: 31986180--31986261 Score: 58
Period size: 21 Copynumber: 3.7 Consensus size: 21
31986170 AATATATACA
31986180 AAAATATAACTAATAATATTT
1 AAAATATAACTAATAATATTT
*** *
31986201 AAAATAATAA-TAGGGATATTA
1 AAAAT-ATAACTAATAATATTT
* *
31986222 AAAATACTTAGTATATAATATTT
1 AAAATA-TAACTA-ATAATATTT
31986245 AAAATATATACATAATA
1 AAAATATA-AC-TAATA
31986262 CAAAAACATA
Statistics
Matches: 44, Mismatches: 11, Indels: 10
0.68 0.17 0.15
Matches are distributed among these distances:
20 1 0.02
21 19 0.43
22 7 0.16
23 15 0.34
24 2 0.05
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (21 bp):
AAAATATAACTAATAATATTT
Found at i:31986267 original size:42 final size:39
Alignment explanation
Indices: 31986169--31986267 Score: 92
Period size: 44 Copynumber: 2.4 Consensus size: 39
31986159 GTACATAGAG
*
31986169 TAATATATACAAAAATATAACTAATAATATTTAAAATAA
1 TAATAGATACAAAAATATAACTAATAATATTTAAAATAA
* * *
31986208 TAATAGGGATATTAAAAATACTTAGTATATAATATTTAAAATATA
1 TAATA--GATA-CAAAAATA-TAACTA-ATAATATTTAAAATA-A
31986253 TACATA-ATACAAAAA
1 TA-ATAGATACAAAAA
31986268 CATATATAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
39 5 0.10
41 3 0.06
42 12 0.25
43 7 0.15
44 15 0.31
45 3 0.06
46 3 0.06
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (39 bp):
TAATAGATACAAAAATATAACTAATAATATTTAAAATAA
Found at i:31987684 original size:46 final size:46
Alignment explanation
Indices: 31987608--31988051 Score: 593
Period size: 46 Copynumber: 9.6 Consensus size: 46
31987598 TGATGTCATA
* * * *
31987608 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATGTCACGTTGCCATG
* ** *
31987654 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGTTGCCATG
*
31987701 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
* ** *
31987747 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGTTGCCATG
31987794 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
* * *
31987840 GTATCTTTCAACCACGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
* * * *
31987886 GTATCTTTCAACCACGGTCTTACACATTTCATATCAAGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
* * * *
31987932 GTATCTTTCAACCATGGTCCTACACATTCCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
* * * *
31987978 ATATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
*
31988024 GTATCTTTCAACCATGGTCTTACACATT
1 GTATCTTTCAACCATGGTCTTACTCATT
31988052 CTATATCAGA
Statistics
Matches: 363, Mismatches: 32, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
46 282 0.78
47 81 0.22
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
Found at i:31992383 original size:83 final size:84
Alignment explanation
Indices: 31992168--31992580 Score: 526
Period size: 88 Copynumber: 4.8 Consensus size: 84
31992158 GAGTTGATTT
* * *
31992168 TTGAAAAGCAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
31992233 GTTGATTTTTGAAAATATAGA
66 GTTGA-TTTTGAAAACAGA-A
* *
31992254 TTGGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
1 TT-G-AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
*
31992319 GAGTTGA-TTTAAAAACAGACA
64 GAGTTGATTTTGAAAACAGA-A
* * **
31992340 TT-AAGAACAGAGATTGAAAATACCTCAGCGTGTGCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
31992404 GTTGGTTTTGAAAACATGAA
66 GTTGATTTTGAAAACA-GAA
* * * * *
31992424 TTAAAAAACAGAAATTGGAAATACCTCAGCATGTGAGCC-GAGGCTTAACTCACTTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATA
31992488 TGAGTTGATTTTTGAAAACAGAA
63 TGAGTTGA-TTTTGAAAACAGAA
** *
31992511 TTGAAAAACAGAAATTGAAGTTACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
31992576 GTTGA
66 GTTGA
31992581 CTTCTTTTTT
Statistics
Matches: 288, Mismatches: 29, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
83 62 0.22
84 14 0.05
85 61 0.21
86 14 0.05
87 63 0.22
88 74 0.26
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (84 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTGAAAACAGAA
Found at i:31992569 original size:172 final size:171
Alignment explanation
Indices: 31992168--31992580 Score: 568
Period size: 172 Copynumber: 2.4 Consensus size: 171
31992158 GAGTTGATTT
* *
31992168 TTGAAAAGCAGAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
31992233 GTTGATTTTTGAAAATATAGATTGGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGC
66 GTTGAGTTTTGAAAACATAGATT-GAAAAAACAGAAATTGAAAATACCTCAGCGTGGCTCGAGGC
31992298 TCAACTCACCTCTCGCAATATGAGTTGATTTAAAAACAGACA
130 TCAACTCACCTCTCGCAATATGAGTTGATTTAAAAACAGACA
* * * **
31992340 TT-AAGAACAGAGATTGAAAATACCTCAGCGTGTGCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
31992404 GTTG-GTTTTGAAAACAT-GAATT-AAAAAACAGAAATTGGAAATACCTCAGCATGTGAGC-CGA
66 GTTGAGTTTTGAAAACATAG-ATTGAAAAAACAGAAATTGAAAATACCTCAGC--GTG-GCTCGA
* * *
31992465 GGCTTAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGA-A
127 GGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTAAAAACAGACA
* *
31992511 TTGAAAAACAGAAATTGAAGTTACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
31992576 GTTGA
66 GTTGA
31992581 CTTCTTTTTT
Statistics
Matches: 211, Mismatches: 22, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
168 27 0.13
169 1 0.00
170 48 0.23
171 63 0.30
172 72 0.34
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (171 bp):
TTGAAAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGAGTTTTGAAAACATAGATTGAAAAAACAGAAATTGAAAATACCTCAGCGTGGCTCGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTAAAAACAGACA
Found at i:32018307 original size:24 final size:24
Alignment explanation
Indices: 32018263--32018309 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
32018253 TATAGTATTA
*
32018263 GAAATATATACATGGGATAATATG
1 GAAATATATACATGAGATAATATG
*
32018287 GAAATATGTACAT-AGAGTAATAT
1 GAAATATATACATGAGA-TAATAT
32018310 ATACAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.30
Consensus pattern (24 bp):
GAAATATATACATGAGATAATATG
Found at i:32020773 original size:24 final size:22
Alignment explanation
Indices: 32020733--32020784 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 22
32020723 ACAACCAAGC
* *
32020733 AGAAAAAGAAAAGAGAAGCAAA
1 AGAAAAAGAAAAAAGAAGAAAA
32020755 AGAAAAGAGCAAAAAAGAAGAAAA
1 AGAAAA-AG-AAAAAAGAAGAAAA
32020779 AGAAAA
1 AGAAAA
32020785 CAAATGTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 6 0.23
23 2 0.08
24 18 0.69
ACGTcount: A:0.75, C:0.04, G:0.21, T:0.00
Consensus pattern (22 bp):
AGAAAAAGAAAAAAGAAGAAAA
Found at i:32027494 original size:3 final size:3
Alignment explanation
Indices: 32027486--32027514 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
32027476 TCCAATTGCA
32027486 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
32027515 AACATTCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:32042656 original size:5 final size:5
Alignment explanation
Indices: 32042648--32042672 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
32042638 CATGTAAGTA
32042648 ACTAT ACTAT ACTAT ACTAT ACTAT
1 ACTAT ACTAT ACTAT ACTAT ACTAT
32042673 CTCATATCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
ACTAT
Found at i:32049149 original size:6 final size:6
Alignment explanation
Indices: 32049138--32049167 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
32049128 ACACCCACAT
32049138 CCCTCC CCCTCC CCCT-C CCCTCC CCCTCC C
1 CCCTCC CCCTCC CCCTCC CCCTCC CCCTCC C
32049168 TAAATTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.00, C:0.83, G:0.00, T:0.17
Consensus pattern (6 bp):
CCCTCC
Found at i:32049159 original size:11 final size:11
Alignment explanation
Indices: 32049138--32049167 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
32049128 ACACCCACAT
32049138 CCCTCCCCCTCC
1 CCCT-CCCCTCC
32049150 CCCTCCCCTCC
1 CCCTCCCCTCC
32049161 CCCTCCC
1 CCCTCCC
32049168 TAAATTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.00, C:0.83, G:0.00, T:0.17
Consensus pattern (11 bp):
CCCTCCCCTCC
Found at i:32050832 original size:17 final size:17
Alignment explanation
Indices: 32050812--32050845 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32050802 AAAAATTTGT
*
32050812 AAATATTAAAAAATATA
1 AAATATAAAAAAATATA
32050829 AAATATAAAAAAATATA
1 AAATATAAAAAAATATA
32050846 TATATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATATAAAAAAATATA
Found at i:32050840 original size:18 final size:20
Alignment explanation
Indices: 32050819--32050858 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
32050809 TGTAAATATT
32050819 AAAAA-ATATA-AAATATAA
1 AAAAATATATATAAATATAA
*
32050837 AAAAATATATATATATATAA
1 AAAAATATATATAAATATAA
32050857 AA
1 AA
32050859 TTTAGAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 5 0.26
20 9 0.47
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAAATATATATAAATATAA
Found at i:32050870 original size:18 final size:18
Alignment explanation
Indices: 32050849--32050885 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32050839 AAATATATAT
*
32050849 ATATATAAAATTTAGAAA
1 ATATATAAAATCTAGAAA
*
32050867 ATATATATAATCTAGAAA
1 ATATATAAAATCTAGAAA
32050885 A
1 A
32050886 ATAACAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (18 bp):
ATATATAAAATCTAGAAA
Found at i:32050874 original size:26 final size:27
Alignment explanation
Indices: 32050824--32050875 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
32050814 ATATTAAAAA
32050824 ATATAAAATATAAAAAAATATATATAT
1 ATATAAAATATAAAAAAATATATATAT
* *
32050851 ATATAAAAT-TTAGAAAATATATATA
1 ATATAAAATATAAAAAAATATATATA
32050876 ATCTAGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (27 bp):
ATATAAAATATAAAAAAATATATATAT
Found at i:32051682 original size:15 final size:15
Alignment explanation
Indices: 32051662--32051692 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32051652 CCTTTCTAGA
32051662 ATTTTAGAATTATAT
1 ATTTTAGAATTATAT
*
32051677 ATTTTAGAATTTTAT
1 ATTTTAGAATTATAT
32051692 A
1 A
32051693 AAAAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (15 bp):
ATTTTAGAATTATAT
Found at i:32051863 original size:23 final size:25
Alignment explanation
Indices: 32051835--32051888 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
32051825 ATAATTTAAA
*
32051835 TATTTTTCT-ATATTTTATGTATTT
1 TATTTTTCTAATATTTTATATATTT
* *
32051859 TTTTTTTCTAATTTTTTATATA-TT
1 TATTTTTCTAATATTTTATATATTT
32051883 TATTTT
1 TATTTT
32051889 CATCTTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (25 bp):
TATTTTTCTAATATTTTATATATTT
Found at i:32051875 original size:25 final size:24
Alignment explanation
Indices: 32051837--32051888 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
32051827 AATTTAAATA
* *
32051837 TTTTTCTATATTTTATGTATTTTT
1 TTTTTCTATATTTTATATATTTAT
*
32051861 TTTTTCTAATTTTTTATATATTTAT
1 TTTTTCT-ATATTTTATATATTTAT
32051886 TTT
1 TTT
32051889 CATCTTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTTTCTATATTTTATATATTTAT
Found at i:32051889 original size:23 final size:23
Alignment explanation
Indices: 32051838--32051905 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
32051828 ATTTAAATAT
* * *
32051838 TTTTCTATATTTTATGTATTTTTT
1 TTTTCTA-ATTTTTTATATTTTTA
*
32051862 TTTTCTAATTTTTTATATATTTA
1 TTTTCTAATTTTTTATATTTTTA
*
32051885 TTTTC--ATCTTTTATATTTTTA
1 TTTTCTAATTTTTTATATTTTTA
32051906 ATGTGTATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
21 14 0.37
23 17 0.45
24 7 0.18
ACGTcount: A:0.21, C:0.06, G:0.01, T:0.72
Consensus pattern (23 bp):
TTTTCTAATTTTTTATATTTTTA
Found at i:32061826 original size:16 final size:16
Alignment explanation
Indices: 32061788--32061826 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
32061778 TCCAAAAAAA
*
32061788 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
32061804 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
32061820 AATAACT
1 AAAAACT
32061827 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:32062072 original size:30 final size:30
Alignment explanation
Indices: 32061985--32062080 Score: 165
Period size: 30 Copynumber: 3.2 Consensus size: 30
32061975 GTACAAGTGA
*
32061985 TGGTGGAGCAAGTGTGGCTAGTGGAGTAGG
1 TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
* *
32062015 TAGTAGAGCAAGTGTGGCTAGTGGAGTTGG
1 TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
32062045 TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
1 TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
32062075 TGGTGG
1 TGGTGG
32062081 CAAAGGCTAG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.19, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
Found at i:32062992 original size:75 final size:75
Alignment explanation
Indices: 32062905--32064092 Score: 731
Period size: 75 Copynumber: 15.5 Consensus size: 75
32062895 CTCAGCGTCT
* *
32062905 TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCT
* *
32062970 CAACTTGTCT
66 CAACGTGTCC
* * * *
32062980 TGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTGAAAGACAGAAATTGAAAATACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCT
*
32063045 CAACGTGTCT
66 CAACGTGTCC
* * * * * *
32063055 TGAGGCTCAACTCACTTCTTGTAGTATGAGTTGA--ATTTTG-AA-ACAGAAA-T-AAAATTATC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA-TACC
*
32063114 TCAGCGTGTCC
65 TCAACGTGTCC
** * * *
32063125 CAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGACAGAAATTGAAATTACC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAATTGAAAATACC
32063190 TCAACGTGTCC
65 TCAACGTGTCC
* * *
32063201 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAATTAAAAATACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCT
*
32063266 CAACGTGTCAG
66 CAACGTGTC-C
* * * * *
32063277 TCAAGGCTCAACTTACCTCTCGCAATATGAGCTGATTTTTTTGAACCG-TAGAAATT-AAAGA-A
1 T-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AGACAGAAATTGAAA-ATA
*** *
32063339 CAGAAATG-GAAAATACC
63 CCTCAACGTG----T-CC
* * * * * * * * * * *
32063356 TTA-GCGT-ATGACCCGAGGCTCAACTCACCTCTTACAATATGAGTTTTTTTTTTAAAAACAAAC
1 TGAGGC-TCA--ACTC-A-CCTC-TCGCA-AT-AT-GAGT-TGA-TTTT---TTT--GAA-AGAC
*
32063419 AGAAATTGAAAATACCTCAGCGTG-CC
49 AGAAATTGAAAATACCTCAACGTGTCC
* *
32063445 TTGAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTTTGACAA-ACAGAAATTGAAAATAC
1 -TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGACAGAAATTGAAAATAC
* *
32063509 CTCAGCGTGCCC
64 CTCAACGTGTCC
****
32063521 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAGACAGAAATTGAAAATA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TTTGA-A-AGACAGAAATTGAAAATA
*
32063586 CCTCAGCACGTGAGCC
63 CCTCA--ACGTG-TCC
* * * * *
32063602 -GAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGACA-ATAGAAATTGCAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCT
* *
32063665 CAGCATGTCC
66 CAACGTGTCC
* * * * * * *
32063675 CGAGGCTCAACTCACCTCTTGCAATATGAGTTTGTTTTTTTTTATAAAAATAGAATTTGAAAATA
1 TGAGGCTCAACTCACCTCTCGCAATATGAG-TTG-ATTTTTTT-GAAAGACAGAAATTGAAAATA
* *
32063740 TCTCAGCGTGTCC
63 CCTCAACGTGTCC
* * * * *
32063753 TGAGGCTCAACTCACTTATCGCAACATGAGTTGA--TTTTT-AACAAACAGCAATTGAAAATACC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AGACAGAAATTGAAAATACC
* *
32063815 TCAGCGTGCCC
65 TCAACGTGTCC
** * ** * *
32063826 CAAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAAATAGACATAAAAACAGAAATTGA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT----TTTTG----AAAGACAGAAATTGA
*
32063891 AAGTGA-CTCAACACGTAAG-CC
58 AAAT-ACCTC-A-ACGT--GTCC
* * ** * * * *
32063912 -AAGGCTCAACTTACCTCTCGTGATATGCGTTAATTTTTTTGAAAG-TAGAATTTGAAAATACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCT
**
32063975 CGGCGTG-CC
66 CAACGTGTCC
** * * * *
32063984 -CCGGCTCAACTCACCTCCCGCAACATGAGTTGA--CTTTTGACAA-ACAGCAATTGAAAATACC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGACAGAAATTGAAAATACC
* *
32064045 TCAGCGTGCCC
65 TCAACGTGTCC
* * *
32064056 CGAGGCTTAACTCACCTCCCGCAATATGAGTTGATTT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
32064093 AAAAAATAGA
Statistics
Matches: 878, Mismatches: 158, Indels: 154
0.74 0.13 0.13
Matches are distributed among these distances:
69 4 0.00
70 46 0.05
71 30 0.03
72 33 0.04
73 94 0.11
74 42 0.05
75 213 0.24
76 100 0.11
77 64 0.07
78 76 0.09
79 6 0.01
80 42 0.05
81 11 0.01
82 5 0.01
83 21 0.02
84 6 0.01
85 35 0.04
86 8 0.01
87 8 0.01
88 1 0.00
89 5 0.01
90 6 0.01
91 3 0.00
92 3 0.00
93 8 0.01
94 7 0.01
95 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (75 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCT
CAACGTGTCC
Found at i:32063179 original size:146 final size:150
Alignment explanation
Indices: 32062905--32064092 Score: 634
Period size: 154 Copynumber: 7.7 Consensus size: 150
32062895 CTCAGCGTCT
* * * *
32062905 TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TATTTTGAAAG-CAGAAATTAAAAATACCT
* *** * * * * *
32062970 CAACTTGTC-TTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGA-ATTTTTTGAAAGACAGAAA
64 CAACGTGTCACCAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAA
*
32063033 TTGAAAATACCTCAACGTGTCT
129 TTGAAAATACCTCAACGTGTCC
* * * * * *
32063055 TGAGGCTCAACTCACTTCTTGTAGTATGAGTTGA-ATTTTGAAA-CAGAAA-TAAAATTATCTCA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGAAAGCAGAAATTAAAAATACCTCA
* *
32063117 GCGTGTC-CCAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGACAGAAATT
66 ACGTGTCACCAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATT
*
32063181 GAAATTACCTCAACGTGTCC
131 GAAAATACCTCAACGTGTCC
* *
32063201 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAATTAAAAATACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TATTTTGAAA-GCAGAAATTAAAAATACCT
* * * *
32063266 CAACGTGTCAGTCAAGGCTCAACTTACCTCTCGCAATATGAGCTGATTTTTTTGAACCGTAGAAA
64 CAACGTGTCA-CCAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT------T-G---
* * * *
32063331 TTAAAGAACAGAAATGGAAAATACCTTAGCGTATGACC
118 --AAAG-ACAGAAATTGAAAATACCTCAACG--TGTCC
* ** ** * * * *
32063369 CGAGGCTCAACTCACCTCTTACAATATGAGTTTTTTTTTTAAAAACAAACAGAAATTGAAAATAC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTT---GA-AAGCAGAAATTAAAAATAC
* ** * * *
32063434 CTCAGCGTG-C-CTTGAGGCTCAACTCACCTCTCACAATATGAGTTG-GTTTTTTTGACAA-ACA
62 CTCAACGTGTCAC-CAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA-AAGACA
* *
32063495 GAAATTGAAAATACCTCAGCGTGCCC
125 GAAATTGAAAATACCTCAACGTGTCC
*
32063521 TGAGGCTCAACTCACCTCTCGCAATATGAGTTG--ATTTTGACAAACAGAGACAGAAATTGAAAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTG----A-A-AG-CAGAAATTAAAAA
* * * *
32063584 TACCTCAGCACGTG--AGCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTTTGACA
59 TACCTCA--ACGTGTCA-CCAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA
* * * * *
32063646 -ATAGAAATTGCAATTACCTCAGCATGTCC
121 GACAGAAATTGAAAATACCTCAACGTGTCC
* * * * * ** * *
32063675 CGAGGCTCAACTCACCTCTTGCAATATGAGTTTGTTTTTTTTTATAAAAATAGAATTTGAAAATA
1 TGAGGCTCAACTCACCTCTCGCAATATGAG-TTG---ATATTT-TGAAAGCAGAAATTAAAAATA
* * ** * * * * *
32063740 TCTCAGCGTGTC-CTGAGGCTCAACTCACTTATCGCAACATGAGTTGA---TTTTT-AACAAACA
61 CCTCAACGTGTCACCAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAA-AGACA
* * *
32063800 GCAATTGAAAATACCTCAGCGTGCCC
125 GAAATTGAAAATACCTCAACGTGTCC
** * * * *
32063826 CAAGGCTCAACTCACCTCCCGCAATATGAGTTGAT-TTAAAAAATAGACATAAAAACAGAAATTG
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATT------T-----TGAAAGCAGAAATTA
* ** * * * ** * *
32063890 AAAGTGA-CTCAACACGTAAGCCAAGGCTCAACTTACCTCTCGTGATATGCGTT-AATTTTTTTG
55 AAAAT-ACCTCAACGTGTCA-CCAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTG
* * **
32063953 AAAG-TAGAATTTGAAAATACCTCGGCGTG-CC
118 AAAGACAGAAATTGAAAATACCTCAACGTGTCC
** * * * * * *
32063984 -CCGGCTCAACTCACCTCCCGCAACATGAGTTGA-CTTTTGACAAACAGCAATTGAAAATACCTC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGA-AAGCAGAAATTAAAAATACCTC
* * * * * *
32064047 AGCGTG-CCCCGAGGCTTAACTCACCTCCCGCAATATGAGTTGATTT
65 AACGTGTCACCAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTT
32064093 AAAAAATAGA
Statistics
Matches: 823, Mismatches: 143, Indels: 148
0.74 0.13 0.13
Matches are distributed among these distances:
145 69 0.08
146 81 0.10
147 22 0.03
148 15 0.02
149 1 0.00
150 47 0.06
151 71 0.09
152 69 0.08
153 58 0.07
154 92 0.11
155 48 0.06
156 29 0.04
157 35 0.04
158 26 0.03
159 22 0.03
160 10 0.01
161 4 0.00
165 4 0.00
166 20 0.02
167 12 0.01
168 61 0.07
169 1 0.00
170 24 0.03
171 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (150 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGAAAGCAGAAATTAAAAATACCTCA
ACGTGTCACCAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATT
GAAAATACCTCAACGTGTCC
Found at i:32063628 original size:232 final size:225
Alignment explanation
Indices: 32062906--32064197 Score: 932
Period size: 230 Copynumber: 5.6 Consensus size: 225
32062896 TCAGCGTCTT
* * * *
32062906 GAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAA-AGACAGAAATTGAAAATACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAG-TTATTTTTTTAAACAAACAGAAATTGAAAATACCT
* * * * * *
32062970 CAACTTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTGAAAGACAGAAATT
65 CAACGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATT
* * * * * * *
32063035 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGTAGTATGAGTTGAATTTTG-----
128 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTGACAAA
* *
32063095 -AA-ACAGAAA-T-AAAATTATCTCAGCGTGTCCC
192 CAAGACAGAAATTGAAAA-TACCTCAGCGTGACCC
* * * * *
32063126 AAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAA-AGACAGAAATTGAAATTACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTT-A-TTTTTTTAAACAAACAGAAATTGAAAATACC
* *
32063190 TCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAAT
64 TCAACGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAAT
* * ** * * *
32063255 TAAAAATACCTCAACGTGTCAGTCAAGGCTCAACTTACCTCTCGCAATATGAGCTGATTTTTTTG
127 TGAAAATACCTCAGCGTG-CCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTG
* * *
32063320 AACCGTAGAAATTAAAGAACAGAAATGGAAAATACCTTAGCGTATGACCC
187 -A-C----AAA--CAAG-ACAGAAATTGAAAATACCTCAGCG--TGACCC
** *
32063370 GAGGCTCAACTCACCTCTTACAATATGAGTTTTTTTTTTAAAAACAAACAGAAATTGAAAATACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTATTTTTTT--AAACAAACAGAAATTGAAAATACC
* * *
32063435 TCAGCGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTTTGACAAACAGAAAT
64 TCAACGTGCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAAT
32063500 TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAA
127 TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAA
*
32063565 CAGAGACAGAAATTGAAAATACCTCAGCACGTGAGCC
192 CA-AGACAGAAATTGAAAATACCTCAG--CGTGACCC
* * * * *
32063602 GAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTT-GAC-AATAGAAATTGCAATTACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTT-ATTTTTTTAAACAAACAGAAATTGAAAATACCT
* * * * * * *
32063665 CAGCATGTCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTTGTTTTTTTTTATAAAAATAGAA
65 CAACGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAG-TTG--ATTTTTT-TGAAAACAGAA
* * * * * * *
32063730 TTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACTTATCGCAACATGAGTTGATTTT---T
125 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACA
* *
32063792 AACAA-ACAGCAATTGAAAATACCTCAGCGTGCCCC
190 AACAAGACAGAAATTGAAAATACCTCAGCGTGACCC
* * * ** *
32063827 AAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAAATAGACATAAAAACAGAAATTGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTT-ATTT-----TTTTA-A-ACAAACAGAAATTGAA
* * * ** * *
32063892 AGTGA-CTCAACACGTAAGCC-AAGGCTCAACTTACCTCTCGTGATATGCGTTAATTTTTTTGAA
58 AAT-ACCTC-A-ACGT--GCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
** * * * * *
32063955 AGTAGAATTTGAAAATACCTCGGCGTGCCC--CGGCTCAACTCACCTCCCGCAACATGAGTTGAC
118 AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
32064018 TTTTGACAAAC-AG-C---AATTGAAAATACCTCAGCGTGCCCC
182 TTTTGACAAACAAGACAGAAATTGAAAATACCTCAGCGTGACCC
* * * ** *
32064057 GAGGCTTAACTCACCTCCCGCAATATGAGTTGATTTAAAAAATAGACATAAAAACAGAAATTGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTT-ATTT-----TTTTA-A-ACAAACAGAAATTGAA
* * * * *
32064122 AGTGA-CTCAACACGTGAGCC-AAGACTCAACTCACTTCTCGTAATATGAGTTGATTTTTTTGAA
58 AAT-ACCTC-A-ACGT--GCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
32064185 AACAGAAA-TGAAA
118 AACAGAAATTGAAA
32064198 TATCCACATA
Statistics
Matches: 893, Mismatches: 119, Indels: 111
0.80 0.11 0.10
Matches are distributed among these distances:
219 1 0.00
220 27 0.03
221 102 0.11
222 2 0.00
223 25 0.03
225 44 0.05
227 21 0.02
228 1 0.00
229 59 0.07
230 185 0.21
231 4 0.00
232 153 0.17
233 20 0.02
234 24 0.03
235 4 0.00
236 25 0.03
237 2 0.00
238 2 0.00
239 3 0.00
240 5 0.01
241 7 0.01
242 15 0.02
243 34 0.04
244 38 0.04
245 88 0.10
246 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (225 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTATTTTTTTAAACAAACAGAAATTGAAAATACCTC
AACGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAA
AATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAG
ACAGAAATTGAAAATACCTCAGCGTGACCC
Found at i:32063835 original size:73 final size:73
Alignment explanation
Indices: 32063337--32064092 Score: 602
Period size: 73 Copynumber: 9.9 Consensus size: 73
32063327 GAAATTAAAG
* * * **
32063337 AACAGAAATGGAAAATACCTTAGCGTATGACCCGAGGCTCAACTCACCTCTTACAATATGAGTTT
1 AACAGAAATTGAAAATACCTCAGCG--TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG-TT
**
32063402 TTTTTTTAAAAACA
63 GATTTTT---AACA
** *
32063416 AACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGGT
1 AACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-G-
* *
32063481 TTTTTTGACA
64 ATTTTTAACA
*
32063491 AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
32063556 TTTGACAAACA
66 TTT---TAACA
** *
32063567 GAGACAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTTGCAATATGAGT
1 -A-ACAGAAATTGAAAATACCTCAG--CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
32063632 TGATTTTTTTGAC-
62 TGA--TTTTTAACA
* * * * * *
32063645 AATAGAAATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTTGT
1 AACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG-TTG-
* *
32063710 TTTTTTTTATAAA
64 --ATTTTTA-ACA
* * * * * * * *
32063723 AATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACTTATCGCAACATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
32063788 TTTTAACA
66 TTTTAACA
* * *
32063796 AACAGCAATTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCCCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
32063861 TTAAAAAATAGACATAAA
66 TT-----TTA-AC----A
* * *** * * ** *
32063879 AACAGAAATTGAAAGTGA-CTCAACACGTAAGCCAAGGCTCAACTTACCTCTCGTGATATGCGTT
1 AACAGAAATTGAAAAT-ACCTC-A-GCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* ***
32063943 AATTTTTTTGA
63 GATTTTTAACA
* * * * *
32063954 AAGTAGAATTTGAAAATACCTCGGCGTGCCCC--GGCTCAACTCACCTCCCGCAACATGAGTTGA
1 AA-CAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
32064017 CTTTTGACA
65 TTTTTAACA
* * *
32064026 AACAGCAATTGAAAATACCTCAGCGTGCCCCGAGGCTTAACTCACCTCCCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
32064091 TT
66 TT
32064093 AAAAAATAGA
Statistics
Matches: 549, Mismatches: 94, Indels: 74
0.77 0.13 0.10
Matches are distributed among these distances:
71 25 0.05
72 31 0.06
73 93 0.17
74 46 0.08
75 70 0.13
76 43 0.08
77 37 0.07
78 80 0.15
79 27 0.05
80 38 0.07
82 4 0.01
83 18 0.03
84 2 0.00
85 35 0.06
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (73 bp):
AACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTAACA
Found at i:32069040 original size:14 final size:14
Alignment explanation
Indices: 32069023--32069053 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32069013 ATGTTCTCGC
32069023 GATCCTTCTTTCCT
1 GATCCTTCTTTCCT
32069037 GATCCTTCTTTCCT
1 GATCCTTCTTTCCT
32069051 GAT
1 GAT
32069054 ATTTATTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.10, C:0.32, G:0.10, T:0.48
Consensus pattern (14 bp):
GATCCTTCTTTCCT
Found at i:32079962 original size:232 final size:232
Alignment explanation
Indices: 32079554--32080844 Score: 1001
Period size: 232 Copynumber: 5.5 Consensus size: 232
32079544 TTCTGTTTTC
* * *
32079554 AAAAAAATCAACTCATATTGCCAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGA-GTCACTTTCA
1 AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGT-ACTTTCA
* **** * *
32079618 ATTTCTGTTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTTGGGG
65 ATTTCTATTTTTATGTCTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGG
* * * *
32079683 CACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAAATCATGTTGCGGGAGGTGAGTTGAG
130 CATGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* ** * *
32079748 CCTCGGGGTACGCGGAGGTATTTTCAAATTCTACTTTC
195 CCTCAGGACACGCTGAGGTATTTTCAAATTCTACTTTA
* * * *
32079786 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTTACTTTCAA
1 AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTACTTTCAA
**** * *
32079851 TTTCTATTTTTATGTCTGTTTTTTAAATCAACTCATATTGTGGGAGGTGAGTTGAG-CTTCGAGG
66 TTTCTATTTTTATGTCTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GAGG
* *
32079915 CATGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGAGAAGTGAGTTGAG
130 CATGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
32079980 CCTCAGGACACGCTGAGATATTTTCAAATTCTATTTTTATA
195 CCTCAGGACACGCTGAGGTATTTTCAAATTCTA--CTT-TA
* * * * * *
32080021 AAAAAAAACAAACTCATATTGCAAGAGGTGAGTTAAGCCTCGG--GACATGCTGAGGTAATTGCA
1 AAAAAAATC-AACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTACTTTCA
* *
32080084 ATTTCTA----T-TGTC----AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCG-GC
65 ATTTCTATTTTTATGTCTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAG-
*
32080139 TCACGTGCTGAGGTATTTTCAATTTCTGTCTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGG
129 GCA--TGCTGAGGTATTTTCAA--T-TG---CTGTTTGTCAAAAATCAACTCATATTGCGAGAGG
** * ** *
32080203 TGAGTTGAGCCTCAGGGTACGCTGAGGTATTTTCAATTTCTGTTTGTTTTT
186 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAATTC----TACTTTA
* * * ** * *
32080254 AAAAAAA-CAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACACTGAGGTATTTTCT
1 AAAAAAATC-AACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTACTTTCA
* * *
32080318 ATTTCTGTTCTTTAATTTCTACGGTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCC
65 ATTTCTATT-TTT-ATGTCT---GTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * * *
32080383 TTGACTGACATGTTGAGGCATTTTCAATTTCTGCCTT-TCAAAAAAATCAACTCATATTGCGAGA
124 TTGA--GGCATGCTGAGGTATTTTCAATTGCTG-TTTGTC--AAAAATCAACTCATATTGCGAGA
* * * *
32080447 GGTGAGTTGAGCCTCAGGACACGCTGACGTAATTTCAATTTCTGTCTTTAA
184 GGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAATTCT-ACTTT-A
* * *
32080498 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG--GACACGCTGA-G-A---T--A
1 AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTACTTTCAA
* ** * * * * * * * ** *
32080554 -----ATTTTTATTTCTGTTTCAGAATTCAACTCATACTACAAAAAGTGAGTTGAGCCTCAAGAC
66 TTTCTATTTTTATGTCTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGGC
* ** * * *
32080614 ACG-TCGAGGTATTTTCAATTTTTGTCTT-TCAAAAAATTCAACTCATACTGCAAGAAGTGAGTT
131 ATGCT-GAGGTATTTTCAATTGCTGT-TTGTC-AAAAA-TCAACTCATATTGCGAGAGGTGAGTT
* * * *
32080677 GAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCA
192 GAGCCTCAGGACACGCTGAGGTATTTTCAAATTCT-ACTTT-A
* * * * * * * *
32080720 AAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCATTGGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTACTTTCAA
* * * * * **
32080785 TTTCTATTTTTAATGTCTAGTTTTAAAGAGTCAATTCATATTCCGAGAAATGAGTTGAGC
66 TTTCTATTTTT-ATGTCT-G-TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
32080845 TCAGGATCAC
Statistics
Matches: 875, Mismatches: 117, Indels: 127
0.78 0.10 0.11
Matches are distributed among these distances:
221 7 0.01
222 125 0.14
224 38 0.04
225 35 0.04
226 3 0.00
227 17 0.02
228 6 0.01
229 9 0.01
230 5 0.01
231 4 0.00
232 299 0.34
233 18 0.02
234 45 0.05
235 10 0.01
236 37 0.04
237 6 0.01
238 1 0.00
239 30 0.03
240 1 0.00
241 4 0.00
242 8 0.01
243 8 0.01
244 40 0.05
245 1 0.00
246 61 0.07
247 1 0.00
249 53 0.06
251 2 0.00
252 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34
Consensus pattern (232 bp):
AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTACTTTCAA
TTTCTATTTTTATGTCTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGGC
ATGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCAGGACACGCTGAGGTATTTTCAAATTCTACTTTA
Found at i:32080090 original size:78 final size:76
Alignment explanation
Indices: 32079875--32080795 Score: 493
Period size: 78 Copynumber: 11.9 Consensus size: 76
32079865 TCTGTTTTTT
* * * *
32079875 AAATCAACTCATATTGTGGGAGGTGAGTTGAGCTTCGAGG-CATGCTGAGGTATTTTCAATTGCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GGACATGCTGAGGTATTTTCAATTTCT
* *
32079939 G-TTTGT--CAA
65 GTTTTTTAAAAA
* * * * * * *
32079948 AAATCAACTCATGTTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAATTCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAATTTCTG
32080013 TTTTTATAAAAA
66 TTTTT-TAAAAA
* * * * *
32080025 AAAACAAACTCATATTGCAAGAGGTGAGTTAAGCCTCGGGACATGCTGAGGTAATTGCAATTTC-
1 AAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAATTTCT
* * *
32080089 -TATTGTCAAAA
65 GTTTTTTAAAAA
* * *
32080100 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACATGCTGAGGTATTTTCAATTTC
***
32080165 TGTCTCTGTTT-GTCA
64 TGT-T-T-TTTAAAAA
32080180 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTAC--GCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGG-ACATGCTGAGGTATTTTCAATTTC
*
32080243 TGTTTGTTTTTAAAA
64 TG-TT-TTTTAAAAA
* * * *
32080258 AAA-CAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACACTGAGGTATTTTCTATTT
1 AAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAT--GCTGAGGTATTTTCAATTT
* * *
32080322 CTGTTCTTTAATTTCTAC
63 CTGTTTTTTAA----AAA
*** ** * * * * * * *
32080340 GGTTCAA-AAAAATCAGCTCATATTGCGAGAGGTGAG--TTGAGCCTTGAC-TGACATGTTGAGG
1 AAATCAACTCATAT-TGC-GAGA--G-GTGAGTTGAGCCTCG-G----GACATG-C----TGAGG
* ** *
32080401 CATTTTCAATTTCTG-CCTTTCAAAA
51 TATTTTCAATTTCTGTTTTTTAAAAA
* * * *
32080426 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGACGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAATTTCTG
* *
32080491 TCTTTAAAAAA
66 TTTTTTAAAAA
* * * *
32080502 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGATAATTTT-TATTTCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGT-ATTTTCAATTTCT
* *
32080566 G---TTT--CAG
65 GTTTTTTAAAAA
* * * * * * ** * *
32080573 AATTCAACTCATACTACAAAAAGTGAGTTGAGCCTCAAGACACG-TCGAGGTATTTTCAATTTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCT-GAGGTATTTTCAATTTCT
* *
32080637 G-TCTTTCAAAA
65 GTTTTTTAAAAA
* * * * ** * *
32080648 AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAATTTCTG
* *
32080713 TCTTTCAAAAA
66 TTTTTTAAAAA
* * * * * * * *
32080724 AAATTAGCTCATATTGCGAGTGGTGAGTTGAGCATTGGCTCACGTGCTGAGCTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACATGCTGAGGTATTTTCAATTTC
*
32080789 TATTTTT
64 TGTTTTT
32080796 AATGTCTAGT
Statistics
Matches: 650, Mismatches: 140, Indels: 111
0.72 0.16 0.12
Matches are distributed among these distances:
70 6 0.01
71 46 0.07
72 2 0.00
73 56 0.09
74 35 0.05
75 88 0.14
76 120 0.18
77 17 0.03
78 136 0.21
79 7 0.01
80 60 0.09
81 7 0.01
82 13 0.02
83 5 0.01
84 3 0.00
85 4 0.01
86 15 0.02
87 4 0.01
88 1 0.00
89 2 0.00
90 5 0.01
91 18 0.03
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (76 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAATTTCTG
TTTTTTAAAAA
Found at i:32080127 original size:310 final size:300
Alignment explanation
Indices: 32079643--32080791 Score: 798
Period size: 310 Copynumber: 3.7 Consensus size: 300
32079633 TCTGTTTTTT
* * ** * *
32079643 AAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGTATTTTCAATTGCTG
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAATTGCTG
* * * * ** * ** * *
32079708 TTTGTCAAAAATCAAATCATGTTGCGGGAGGTGAGTTGAGCCTCGGGGTACGCGGAGGTATTTTC
66 TTTATAAAAAAACAAATCATATTGCAAGAGGTGAGTTAAGCCTCGGGACACGCGGAGGTAATTGC
* * *
32079773 AAATTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTT
131 AAATTCTACTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCT
* * ** * *
32079838 GAGTTACTTTCAATTTCTATTTTTATGTCTGTTT-TTTAAATCAACTCATATTGTGGGAGGTGAG
196 GAGGTACTTTCAATTTC------TATCTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAG
* *
32079902 TTGAGCTTC-GAGGCATGCTGAGGTATTTTCAATTGCTGTTTGTCAA
255 TTGAGCCTCAG-GGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAA
*
32079948 AAATCAACTCATGTTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAATT-CT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTC-AATTGC-
* * *
32080012 ATTTTTATAAAAAAAAACAAACTCATATTGCAAGAGGTGAGTTAAGCCTCGGGACATGCTGAGGT
64 -TGTTTAT--AAAAAAACAAA-TCATATTGCAAGAGGTGAGTTAAGCCTCGGGACACGCGGAGGT
*
32080077 AATTGCAATTTCTA-TTGTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTC
125 AATTGCAAATTCTACTT-TCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTC
* *
32080141 ACGTGCTGAGGTATTTTCAATTTCTGTCTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGA
189 ACGTGCTGAGGTACTTTCAATTTCTATCTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGA
* * *
32080206 GTTGAGCCTCAGGGTACGCTGAGGTATTTTCAATTTCTGTTTGTTTTTAAA
254 GTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTGCTGTTTG----TCAA
* * * * * * * *
32080257 AAAACAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACACTGAGGTATTTTCTATTT
1 AAATC-AACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG--ACACGCTGAGATATTTTC-A-AT
* ** * * *
32080322 CTGTTCTTTAATTTCTACGGTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGA
61 -TG--C--T--GTT-TA----T-AAAAAAA-CAAATCATATTGCAAGAGGTGAGTTAAGCCTCG-
* * ** * * * * * *
32080387 CTGACATGTTGAGGCATTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
111 -GGACACGCGGAGGTAATTGCAAATTCT-ACTTTCAAAAAAATCAACTCATATTGCAAGAGGTGA
* * * * *****
32080452 GTTGAGCCTCAGG-ACAC--GCTGACGTAATTTCAATTTCTGTCT-T-TAAAAAAAAATCAACTC
174 GTTGAGCCTC-GGCTCACGTGCTGAGGTACTTTCAATTTCTATCTCTGTTTGTCAAAATCAACTC
* * * * *
32080512 ATATTGCGAGAGGTGAGTTGAGCCT-TGGGACACGCTGAGATAATTTT-TATTTCTG-TT-TCAG
238 ATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CACGCTGAGGT-ATTTTCAATTGCTGTTTGTCAA
* * * * * * * **
32080573 AATTCAACTCATACTACAAAAAGTGAGTTGAGCCTCAAGACACG-TCGAGGTATTTTCAATTTTT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCT-GAGATATTTTCAATTGCT
* * * * * ** ** *
32080637 GTCTT-TCAAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
65 GT-TTAT-AAAAAA-ACAAATCATATTGCAAGAGGTGAGTTAAGCCTCGGGACACGCGGAGGTAA
* * * * * * * * *
32080701 TTTCAATTTCTGTCTTTCAAAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCATTGGCTCA
127 TTGCAAATTCT-ACTTTC-AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCA
* *
32080766 CGTGCTGAGCTATTTTCAATTTCTAT
190 CGTGCTGAGGTACTTTCAATTTCTAT
32080792 TTTTAATGTC
Statistics
Matches: 690, Mismatches: 111, Indels: 91
0.77 0.12 0.10
Matches are distributed among these distances:
297 32 0.05
298 38 0.06
299 35 0.05
300 19 0.03
304 11 0.02
305 114 0.17
306 6 0.01
307 5 0.01
309 18 0.03
310 143 0.21
311 1 0.00
312 18 0.03
313 15 0.02
314 1 0.00
315 28 0.04
316 5 0.01
317 3 0.00
319 3 0.00
320 2 0.00
321 5 0.01
322 53 0.08
323 39 0.06
324 26 0.04
325 22 0.03
326 44 0.06
327 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (300 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAATTGCTG
TTTATAAAAAAACAAATCATATTGCAAGAGGTGAGTTAAGCCTCGGGACACGCGGAGGTAATTGC
AAATTCTACTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCT
GAGGTACTTTCAATTTCTATCTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCAGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAA
Found at i:32080672 original size:75 final size:75
Alignment explanation
Indices: 32080342--32080756 Score: 430
Period size: 75 Copynumber: 5.5 Consensus size: 75
32080332 ATTTCTACGG
* * * * * *
32080342 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACATGTTGAGGCATTTT
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-AGACACGTCGAGGTATTTT
*
32080407 CAATTTCTGCCT
64 CAATTTCTGTCT
* * *
32080419 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG-CTGACGTAATTTC
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTC-GAGGTATTTTC
32080483 AATTTCTGTCT
65 AATTTCTGTCT
* *** *
32080494 TTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACG-CTGAGATAATTT
1 TT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTC-GAGGT-ATTT
*
32080558 T-TATTTCTG--T
63 TCAATTTCTGTCT
* * * * * * *
32080568 TTC--AGAATTCAACTCATACTACAAAAAGTGAGTTGAGCCTCAAGACACGTCGAGGTATTTTCA
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTCGAGGTATTTTCA
*
32080631 ATTTTTGTCT
66 ATTTCTGTCT
* * * * *
32080641 TTCAAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTCGAGGTATTTTCA
32080706 ATTTCTGTCT
66 ATTTCTGTCT
* * *
32080716 TTCAAAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGC
1 TTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
32080757 ATTGGCTCAC
Statistics
Matches: 286, Mismatches: 42, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
70 5 0.02
71 46 0.16
72 1 0.00
73 4 0.01
74 3 0.01
75 93 0.33
76 90 0.31
77 44 0.15
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (75 bp):
TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTCGAGGTATTTTCA
ATTTCTGTCT
Found at i:32082515 original size:25 final size:23
Alignment explanation
Indices: 32082463--32082517 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
32082453 TATAAATAGT
32082463 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
32082486 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
32082511 AATAGTG
1 AATAGTG
32082518 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:32082623 original size:76 final size:73
Alignment explanation
Indices: 32082543--32082711 Score: 167
Period size: 76 Copynumber: 2.2 Consensus size: 73
32082533 ATGTTAAGAT
* * * * *
32082543 ATATATAATATATACATATGTATAAAATAGATATAAAAAAATATGTACATAATATAGTGTAAAAA
1 ATATATAATATATACATAAG-ATAAAAT-G-TAGAAAAAAA-ATATAAATAATATAGTATAAAAA
32082608 ATACATACATAA
62 ATACATACATAA
* * * *
32082620 TATAATTAAAATATATACATAAGATAACATGTAGAAAAAAAATATAAATAATATAGTATTAAAGA
1 -AT-A-TATAATATATACATAAGATAAAATGTAGAAAAAAAATATAAATAATATAGTATAAAAAA
*
32082685 TATATACATAAA
63 TACATACAT-AA
32082697 ATAGTATAATATATA
1 ATA-TATAATATATA
32082712 TATACGTAAT
Statistics
Matches: 76, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
75 11 0.14
76 29 0.38
77 11 0.14
78 3 0.04
79 7 0.09
80 15 0.20
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.31
Consensus pattern (73 bp):
ATATATAATATATACATAAGATAAAATGTAGAAAAAAAATATAAATAATATAGTATAAAAAATAC
ATACATAA
Found at i:32082689 original size:25 final size:24
Alignment explanation
Indices: 32082660--32082790 Score: 94
Period size: 25 Copynumber: 5.5 Consensus size: 24
32082650 GTAGAAAAAA
*
32082660 AATATAAATAATATAGTATTAAAG
1 AATATACATAATATAGTATTAAAG
* *
32082684 ATATATACATAAAATAGTA-TAATAT
1 A-ATATACATAATATAGTATTAA-AG
* * *
32082709 ATATATACGTAATATAGAATT-TAG
1 A-ATATACATAATATAGTATTAAAG
* *
32082733 AATATACCTAATATA-T-TAAAAG
1 AATATACATAATATAGTATTAAAG
* *
32082755 AATATATATAATATAATATT-AAG
1 AATATACATAATATAGTATTAAAG
32082778 AAATATA-ATAATA
1 -AATATACATAATA
32082791 ACAAAAAAAG
Statistics
Matches: 85, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
21 1 0.01
22 15 0.18
23 23 0.27
24 13 0.15
25 32 0.38
26 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (24 bp):
AATATACATAATATAGTATTAAAG
Found at i:32082695 original size:29 final size:28
Alignment explanation
Indices: 32082591--32082696 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 28
32082581 AAATATGTAC
* *
32082591 ATAATATAGT-GTAAAA-A-ATACATAC
1 ATAATATAGTATTAAAATATATACATAA
32082616 ATAATATA--ATTAAAATATATACATAA
1 ATAATATAGTATTAAAATATATACATAA
* * * *
32082642 GATAACAT-GTA-GAAAA-A-AAATATAA
1 -ATAATATAGTATTAAAATATATACATAA
32082667 ATAATATAGTATTAAAGATATATACATAA
1 ATAATATAGTATTAAA-ATATATACATAA
32082696 A
1 A
32082697 ATAGTATAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 18
0.68 0.11 0.20
Matches are distributed among these distances:
24 11 0.18
25 18 0.30
26 11 0.18
27 11 0.18
28 2 0.03
29 7 0.12
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.29
Consensus pattern (28 bp):
ATAATATAGTATTAAAATATATACATAA
Found at i:32083110 original size:16 final size:16
Alignment explanation
Indices: 32083072--32083110 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
32083062 ATCTCCAAAA
*
32083072 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
32083088 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
32083104 AATAACT
1 AAAAACT
32083111 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:32083359 original size:30 final size:30
Alignment explanation
Indices: 32083268--32083362 Score: 145
Period size: 30 Copynumber: 3.2 Consensus size: 30
32083258 TAGGTACAAG
32083268 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * * *
32083298 AGGTAGTAGAGCAAGTGTGGCTAGTGAAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
32083328 TGGTGGTGGAGCAAGTGTGGCTGGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
32083358 TGGTG
1 TGGTG
32083363 ATGGCAAAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.19, C:0.06, G:0.48, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:32098121 original size:20 final size:20
Alignment explanation
Indices: 32098096--32098134 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
32098086 TTAACAAGTA
32098096 TCCTT-AAAATATTTGATATC
1 TCCTTAAAAAT-TTTGATATC
32098116 TCCTTAAAAATTTTGATAT
1 TCCTTAAAAATTTTGATAT
32098135 ATACCAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (20 bp):
TCCTTAAAAATTTTGATATC
Found at i:32099365 original size:20 final size:21
Alignment explanation
Indices: 32099319--32099371 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
32099309 TACTAATTAC
32099319 AAATATTTAATAATTATATTT
1 AAATATTTAATAATTATATTT
32099340 AAATATTTAA-AA-TATAGTTT
1 AAATATTTAATAATTATA-TTT
*
32099360 ATATATTCTAAT
1 AAATATT-TAAT
32099372 TAAATTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 4 0.14
20 11 0.39
21 13 0.46
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
AAATATTTAATAATTATATTT
Found at i:32099517 original size:11 final size:11
Alignment explanation
Indices: 32099501--32099530 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
32099491 TAATATTAAC
32099501 TAATTTAAATA
1 TAATTTAAATA
32099512 TAATTTAAATA
1 TAATTTAAATA
32099523 TATATTTA
1 TA-ATTTA
32099531 TTACTTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TAATTTAAATA
Done.