Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_6636

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6334
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36


Found at i:2173 original size:19 final size:18

Alignment explanation


    Indices: 2149--2205  Score: 66
    Period size: 19  Copynumber: 3.2  Consensus size: 18

       2139 GGGTGAGAAG

                               
       2149 TAAAAGTTTAGGGGGAAAA
          1 TAAAAGTTT-GGGGGAAAA

                             *
       2168 TAAAAGTTT-GGGG--AG
          1 TAAAAGTTTGGGGGAAAA

                               
       2183 TAAAAGTTTGAGGGGAAAA
          1 TAAAAGTTTG-GGGGAAAA

                
       2202 TAAA
          1 TAAA

       2206 TAGGGGAGAG


Statistics
Matches: 32,  Mismatches: 2, Indels: 8
        0.76            0.05        0.19

Matches are distributed among these distances:
  15   10  0.31
  17    8  0.25
  19   14  0.44

ACGTcount: A:0.46, C:0.00, G:0.32, T:0.23


Consensus pattern (18 bp):   
TAAAAGTTTGGGGGAAAA
Done.