Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_573
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58052
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Found at i:3763 original size:39 final size:39
Alignment explanation
Indices: 3705--3923 Score: 182
Period size: 40 Copynumber: 5.7 Consensus size: 39
3695 TATAACCACA
* * *
3705 AGCACAATTGCCTTTGGGTCTTAACCCGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGTATAGCAACT
* * *
3744 CGCACAAATGCCTTCGGGTCTTAGCCCGGACATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG-TATAGCAACT
* * **
3784 CGCACAAATGCCTTCGGGTCTTAGCCC-GAATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGTATAGCA--ACT
* * * *
3824 AGCACAATTACCTTC-GGTCTTAACCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGTATAGCAACT
**
3862 AGCAC-AATG-CTTC-GGTCTTAGCCCGG-ATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGTATAGCA--ACT
* *
3899 AGCATAAATGCCTTC-GGACTTAGCC
1 AGCACAAATGCCTTCGGGTCTTAGCC
3924 GGATATCATT
Statistics
Matches: 147, Mismatches: 25, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
35 4 0.03
36 15 0.10
37 9 0.06
38 16 0.11
39 48 0.33
40 55 0.37
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (39 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGTATAGCAACT
Found at i:3892 original size:75 final size:78
Alignment explanation
Indices: 3779--3925 Score: 210
Period size: 75 Copynumber: 1.9 Consensus size: 78
3769 CCGGACATAT
* * *
3779 CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGAATAAAATCACTAGCACAATTACCTTCGGTCT
1 CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGAATAAAATCACTAGCACAAATACCTTCGGACT
3844 TAACCGGGTATAG
66 TAACCGGGTATAG
* * *
3857 CAACTAGCAC-AATG-CTTC-GGTCTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGACT
1 CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGAATAAAATCACTAGCACAAATACCTTCGGACT
*
3919 TAGCCGG
66 TAACCGG
3926 ATATCATTCA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
75 45 0.73
76 4 0.06
77 4 0.06
78 9 0.15
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (78 bp):
CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGAATAAAATCACTAGCACAAATACCTTCGGACT
TAACCGGGTATAG
Found at i:11718 original size:40 final size:40
Alignment explanation
Indices: 11651--11938 Score: 278
Period size: 40 Copynumber: 7.2 Consensus size: 40
11641 CGGAATTTAG
* * * * *
11651 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAT
1 CCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAAC
* *
11691 CCGGGTATAGCAACTCA-CACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACT-AGCACAAATGCCTTCGGGTCTTAAC
* * *
11731 TCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
11771 CCGGATAAAATC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGAT-ATAGCAACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
11811 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
11851 CCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGAT-ATAGCAACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
11891 CCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGAT-ATAGCAACTAGCACAAATGCCTTCGGGTCTTAAC
11931 CCGGATAT
1 CCGGATAT
11939 CATTCAAATG
Statistics
Matches: 216, Mismatches: 27, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
39 5 0.02
40 203 0.94
41 8 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
CCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:11750 original size:80 final size:80
Alignment explanation
Indices: 11647--11937 Score: 347
Period size: 80 Copynumber: 3.6 Consensus size: 80
11637 TCTTCGGAAT
* * * * ** * * *
11647 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAATCCGGGT-ATAGCAACTCA-C
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT-AGC
11709 ACAAATGCCTTCGGGTC
64 ACAAATGCCTTCGGGTC
*
11726 TTAGCTCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAC
*
11791 AATTGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * * *
11806 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAC
*
11871 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGTC
* * *
11886 TTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 TTAGCCCGGAT-ATATCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
11938 TCATTCAAAT
Statistics
Matches: 182, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
79 5 0.03
80 171 0.94
81 6 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAC
AAATGCCTTCGGGTC
Found at i:11867 original size:120 final size:120
Alignment explanation
Indices: 11638--11934 Score: 436
Period size: 120 Copynumber: 2.5 Consensus size: 120
11628 ACCCAAGTTT
* * * * * *
11638 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAATCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
* *
11702 AACTCACACAAATGCCTTCGGGTCTTAGCTCGGATATATCAACTAGCACAAATGC
66 AACTCACACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGC
*
11757 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
* *
11822 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCATAAATGC
66 AACTCACACAAATGCCTTCGGGTCTTAGCCCGGAT-AAATCAACTAGCACAAATGC
* * * *
11877 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
11935 ATATCATTCA
Statistics
Matches: 160, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
119 10 0.06
120 146 0.91
121 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
AACTCACACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGC
Found at i:33930 original size:43 final size:42
Alignment explanation
Indices: 33861--33961 Score: 103
Period size: 43 Copynumber: 2.4 Consensus size: 42
33851 AACTCACACA
* * ** * *
33861 ATGCCATATCCTAGATATGGTCTTACATGTTATCATATATCG
1 ATGCCATATCCCAGATAGGGTCTTACATGAAATCATAAATAG
* *
33903 ATGCCACTATCCCGGATAGGGTGTTACATGAAATCATAAATAG
1 ATGCCA-TATCCCAGATAGGGTCTTACATGAAATCATAAATAG
*
33946 ATGCCAATGTCCCAGA
1 ATGCC-ATATCCCAGA
33962 CATGACCTTA
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
42 6 0.13
43 40 0.85
44 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATAGGGTCTTACATGAAATCATAAATAG
Found at i:33973 original size:43 final size:43
Alignment explanation
Indices: 33926--34008 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
33916 GGATAGGGTG
* *
33926 TTACATGAAATCATAAATA-GATGCCAATGTCCCAGACATGACC
1 TTACACGAAATCA-AAATACAATGCCAATGTCCCAGACATGACC
* * *
33969 TTACACGTAATCACAATACAATGCCAATGTCCCATACATG
1 TTACACGAAATCAAAATACAATGCCAATGTCCCAGACATG
34009 GTTTTACATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 4 0.12
43 30 0.88
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (43 bp):
TTACACGAAATCAAAATACAATGCCAATGTCCCAGACATGACC
Found at i:37743 original size:93 final size:93
Alignment explanation
Indices: 37584--37754 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
37574 GCCCCTAAGT
* *
37584 GAACTCAGACTCAACTAAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTAAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37649 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
37677 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTAAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37742 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37755 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTAAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37751 original size:46 final size:46
Alignment explanation
Indices: 37579--37751 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
37569 AACCCGCCCC
* * * *
37579 TAAGTGAACTCAGACTCAACTAAACGAGTTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
37625 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
37673 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
37718 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37752 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:40179 original size:15 final size:15
Alignment explanation
Indices: 40153--40208 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
40143 CAAGGAAACC
40153 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
40168 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
40183 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
40198 GAATAAAGAAA
1 GAATAAAGAAA
40209 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:43217 original size:46 final size:46
Alignment explanation
Indices: 43150--43320 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
43140 TAACCCGCCC
* *
43150 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
43196 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
43244 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
*
43289 TAGGTGAACTCGGACTCAAC-CAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
43321 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 13 0.13
46 46 0.45
47 27 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:43262 original size:93 final size:92
Alignment explanation
Indices: 43155--43324 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 92
43145 CGCCCTAAGT
* * *
43155 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAAC-CAA
43220 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
43248 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACCAAC
43313 GAGTTCGGATGC
66 GAGTTCGGATGC
43325 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 16 0.23
93 55 0.77
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:44203 original size:39 final size:40
Alignment explanation
Indices: 44137--44323 Score: 272
Period size: 39 Copynumber: 4.7 Consensus size: 40
44127 TATTCGGATG
* *
44137 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * **
44177 A-ATTCCGGGCTAAG-CCTGAAGGCATTTGTGTAAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
44216 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
44256 ATAACCGGGCTAAGTCCCGAA-GCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
44295 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
44324 AGTAAGTAGC
Statistics
Matches: 132, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 72 0.55
40 60 0.45
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:44281 original size:79 final size:79
Alignment explanation
Indices: 44137--44323 Score: 270
Period size: 79 Copynumber: 2.4 Consensus size: 79
44127 TATTCGGATG
* * *
44137 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCTGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
*
44202 TTGTGTAAGTTACT
66 TTGTGCAAGTTACT
* * *
44216 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTACT-ATAACCGGGCTAAGTCCCGAA-GC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
44279 ATTTGTGCGAGTTACT
64 ATTTGTGCAAGTTACT
44295 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
44324 AGTAAGTAGC
Statistics
Matches: 97, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 2 0.02
79 90 0.93
80 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGTGCAAGTTACT
Found at i:50711 original size:37 final size:37
Alignment explanation
Indices: 50582--50749 Score: 187
Period size: 35 Copynumber: 4.8 Consensus size: 37
50572 TATTCAGATG
*
50582 ATAACCGGGCTAAGTCCG-AGG-A-TTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTG-GAGT-ACT
**
50618 A-ATTC-GGCTAA--CCGAAGGCATTTGTGGAGTAC-
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGGAGTACT
* *
50650 ATATCC-GGCTAAGTCCGAAGGCATTTGTGCGATTACT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTG-GAGTACT
50687 ATAACCGGGCT-AGTCCGAAGGCATTTGT-GAGTACT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGGAGTACT
50722 ATAACCGGGCTAAGTCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCGAAGGCATTTG
50750 AGCAAGTAGC
Statistics
Matches: 115, Mismatches: 7, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
32 4 0.03
33 14 0.12
34 10 0.09
35 39 0.34
36 22 0.19
37 22 0.19
38 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (37 bp):
ATAACCGGGCTAAGTCCGAAGGCATTTGTGGAGTACT
Found at i:50779 original size:73 final size:72
Alignment explanation
Indices: 50582--50780 Score: 209
Period size: 73 Copynumber: 2.8 Consensus size: 72
50572 TATTCAGATG
*
50582 ATAACCGGGCTAAGTCCG-AGG-A-TTGTGCTAGT-GACTA-ATTCGGCTAA-CCGAAGGCATTT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCAAGTAG-CTATA-TCGGCTAATCCGAAGGCATTT
50641 GTGGAGTAC
64 GTGGAGTAC
* * * * *
50650 ATATCC-GGCTAAGTCCGAAGGCATTTGTGCGATTA-CTATAACCGGGCTAGTCCGAAGGCATTT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCAAGTAGCTAT-ATC-GGCTAATCCGAAGGCATTT
50713 GT-GAGTAC
64 GTGGAGTAC
* *
50721 TATAACCGGGCTAAGTCCGAAGGCATTTGAGCAAGTAGCTATATCGGCTAAATTCGAAGG
1 -ATAACCGGGCTAAGTCCGAAGGCATTTGTGCAAGTAGCTATATCGGCT-AATCCGAAGG
50781 TACTTGGTTG
Statistics
Matches: 107, Mismatches: 12, Indels: 19
0.78 0.09 0.14
Matches are distributed among these distances:
67 11 0.10
68 8 0.07
69 4 0.04
70 9 0.08
71 12 0.11
72 23 0.21
73 36 0.34
74 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (72 bp):
ATAACCGGGCTAAGTCCGAAGGCATTTGTGCAAGTAGCTATATCGGCTAATCCGAAGGCATTTGT
GGAGTAC
Done.