Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_7126
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4220
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Found at i:180 original size:78 final size:72
Alignment explanation
Indices: 1--428 Score: 372
Period size: 71 Copynumber: 5.8 Consensus size: 72
* * *
1 AAATTCAACTCATATTAG-GAGGAATGAGTTAAGCCTCAAGACATGCTGAGGTATTTTCAATTT-
1 AAATTCAACTCATATT-GCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA-TTTCAATTTC
*
64 TGTTTTTTAAA
64 TG--TTTTCAA
* * ** **
75 AAAAT-AACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTTAATTTCCATATA
1 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG-T-ATTT-C--A-A
*
139 TTTATGTTTTCAA
60 TTTCTGTTTTCAA
* * *
152 AAATTCAACTCATATTACGAGAAATGAGTTGAGTCTCAA-ACACGTTGAGGTATTTTCAATTTCT
1 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA-TTTCAATTTCT
*
216 CTTTTCAA
65 GTTTTCAA
** * * * * *
224 AAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATCTGAGGCATTTTTAATTT
1 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACAC-GCTGAGGTA-TTTCAATTT
* *
287 TTGTCTTCAACAAA
63 CTGT-TT--TC-AA
* *
301 AAATTCAACTGATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC-ATTTCT
1 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTCAATTTCT
365 GTTTTC-A
65 GTTTTCAA
*
372 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA-GT-TTTCAA
1 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCAA
429 ATTCAATAAA
Statistics
Matches: 287, Mismatches: 46, Indels: 47
0.76 0.12 0.12
Matches are distributed among these distances:
68 4 0.01
69 1 0.00
70 2 0.01
71 78 0.27
72 19 0.07
73 54 0.19
74 10 0.03
75 6 0.02
76 12 0.04
77 34 0.12
78 64 0.22
79 3 0.01
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (72 bp):
AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCAATTTCTG
TTTTCAA
Found at i:303 original size:149 final size:148
Alignment explanation
Indices: 1--408 Score: 477
Period size: 149 Copynumber: 2.7 Consensus size: 148
* * * * * *
1 AAATTCAACTCATATTAGGAGGAATGAGTTAAGCCTCAAGACATGCTGAGGTATTTTCAATTTTG
1 AAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA-TTTC
* * *
66 TTTTTTAAAAAAAT-AACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTTAAT
65 TCTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG-TAAT
*
130 TTCCATATATTTATGTTTTCAA
128 TT-CATATATTTATGTTTACAA
*
152 AAATTCAACTCATATTACGAGAAATGAGTTGAGTCTCAA-ACACGTTGAGGTATTTTCAATTTCT
1 AAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
** * *
216 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATCTGAGG-CATTT
66 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC-GCTGAGGTAATTT
* *
280 -TTA-ATTTTTGTCTTCAACAAA
130 CATATATTTATGT-TT--AC-AA
* * *
301 AAATTCAACTGATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC-ATTTCT
1 AAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
* * **
365 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
66 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
409 AAGACACGTT
Statistics
Matches: 225, Mismatches: 25, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
145 7 0.03
146 4 0.02
148 11 0.05
149 127 0.56
150 41 0.18
151 35 0.16
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (148 bp):
AAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
ATATATTTATGTTTACAA
Found at i:483 original size:55 final size:55
Alignment explanation
Indices: 365--467 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 55
355 TTTCATTTCT
* *
365 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
1 GTTTTC-AAATTCAACTAATATTGCGAGAAATGAGTTGAGCCTCAAGACACGATGA
*
421 GTTTTCAAATTCAA-TAAATATTGCGAG-AATGA-TTGAGTCTCAAGACA
1 GTTTTCAAATTCAACT-AATATTGCGAGAAATGAGTTGAGCCTCAAGACA
468 TCTGATGTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
53 14 0.32
54 6 0.14
55 18 0.41
56 6 0.14
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (55 bp):
GTTTTCAAATTCAACTAATATTGCGAGAAATGAGTTGAGCCTCAAGACACGATGA
Found at i:1033 original size:72 final size:72
Alignment explanation
Indices: 421--2815 Score: 2390
Period size: 72 Copynumber: 33.3 Consensus size: 72
411 GACACGTTGA
* * * *
421 GTTTTC-AAATTCAA-TAAATATTGCGAG-AATGA-TTGAGTCTCAAGACA--TCTGATGTATTT
1 GTTTTCAAAATTCAACT-CATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT-TGAGGTAATT
480 TCAATTTCT
64 TCAATTTCT
* * * ** * *
489 -TTTTTAAAAATCAA--C-TATTGCGATAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
*
549 AATTTAT
66 AATTTCT
*
556 GTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTC-AGACACGTTGAGGT-ATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
619 AATTTCT
66 AATTTCT
* * ** * * * * *
626 CTTTTCAAAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGCATT
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAAT
*
689 TTCAATTTTT
63 TTCAATTTCT
699 GTTTTCAAAAAAAATTCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
1 GTTTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
763 TTTCAATTTCT
62 TTTCAATTTCT
*
774 GTTTTCAAAA-TC-ACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
*
837 AATTTAT
66 AATTTCT
* * * * * *
844 GTTTTCAAAATTCAA-T-ATATTGCGAGACATGAGTTGAGTCTCAAGACATGCTGATGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
907 AATTTCTATT
66 AATTTC---T
* * * * ** ** *
917 TTTTTAAATAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
1 GTTTTCAA-AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
982 CAATTTCT
65 CAATTTCT
* ** *
990 GTTTTCAAAATTCAACTCTTATTATGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1055 AATTTCT
66 AATTTCT
* ** * * * * *
1062 GTTTTCAAAA-TCAACTCAGATTGCGAGAGGTGAGTTGAGGCTC-CGTTCACATGCTGAGGTATT
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAAT
*
1125 TTAAATTTCT
63 TTCAATTTCT
* * * * *
1135 GTCTTTGAAAAAAATT-TACT-AT-TTACGAG---TTAGTTGA-CCTCAAGA-ACGTTGAGGTAT
1 GT-TTT---CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
1192 TTTC-ATTTCT
62 TTTCAATTTCT
* *
1202 -ATTTCAGAAA-T--ACTCATATTGCGAG-AGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
1 GTTTTCA-AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
1262 CAATTTCT
65 CAATTTCT
*
1270 GTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
*
1335 AA-TTAT
66 AATTTCT
* * * * * * * *
1341 GTTTTCAAAATTCAATTAATATTGCGAGACATGAGTTGAGTCTCAAGACATGCTGATGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1406 AATTTCTATTT
66 AATTTC----T
* * * * ** ** *
1417 TTTTTAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
1 GTTTT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
1482 CAATTTCT
65 CAATTTCT
* * *
1490 GTTTTCAAAATTCAACTCTTATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1555 AATTTCT
66 AATTTCT
* * ** * * * * *
1562 GTTTTCAAAAATCAACTCAGATTGCGAGAGGTGAGTTGAGGCTC-CGTTCACATGCTGAGGTATT
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAAT
*
1626 TTAAATTTCT
63 TTCAATTTCT
* * *
1636 GTCTTTCAAAAAAAATTTAACTCATATT-AGAGAAATTAGTTGAGCCTCAAGACACGTTGAGGTA
1 GT-TTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
*
1700 TTTTCAATTTCT
61 ATTTCAATTTCT
* * ** ** * *
1712 ATTTTCAGAAA--AAACTCATATTGCGAGAGGTGAGTTGAGCCTCGATTCACATGCTGAGGT-AT
1 GTTTTCA-AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-A-AGACACGTTGAGGTAAT
1774 TCTCAATTTCT
63 T-TCAATTTCT
*
1785 GTCTTTCAAAATAATTCAACTCATA-TGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
1 GT-TTTC--AA-AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
1849 TTTCAATTTCT
62 TTTCAATTTCT
* * * * *
1860 G-TTTCCAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTT
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1924 AATTTCT
66 AATTTCT
* * * ** ** * *
1931 ATTTTTCAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTA
1 -GTTTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
1996 ATTTCAATTTCT
61 ATTTCAATTTCT
*
2008 GTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
2073 AATTTCT
66 AATTTCT
*
2080 GTTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
2145 AATTT-T
66 AATTTCT
* * * *
2151 GGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTAAGCCTCAAGACATGCTGAGGTATTTT
1 -GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
*
2216 CAATTTTT
65 CAATTTCT
* * * * ** ** *
2224 GTTTTTTTAAAAAAATAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
1 G---TTTT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
2289 TTTCAATTTCT
62 TTTCAATTTCT
* * ** ** * *
2300 G-TTTCAGAATTCAAATCATATTGCGAGATGTGAGTTGAGCCTCGGGACACGCTGAGATAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
2364 AATTTCT
66 AATTTCT
* * *
2371 GTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAACACACGTTGAGGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
2436 AATTTCT
66 AATTTCT
* * * **
2443 CTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
2507 AATTTCT
66 AATTTCT
*
2514 GTTTTCAAAATTCAACTCA-AATGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
2578 AATTTCT
66 AATTTCT
* * * * *
2585 GTTTTCAAAATTCAA-TCATACTGCAAGAAATGACTTGAGCTCTCAAGACACGTTGATGCTATTT
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGC-CTCAAGACACGTTGA-GGTAATT
2649 TCAA-TTCT
64 TCAATTTCT
* * ** * * *
2657 GTTTTTAGAAA-T-AACTCATATTGCGATAGGTGAGTTGAGCCTC-GGACACGCTGAGGT-ATCT
1 GTTTTCA-AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
2718 CAATTTCT
65 CAATTTCT
*
2726 G-TTTCAAAATTC-ACTC-TATTG-GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
2787 AATTTCT
66 AATTTCT
2794 GTTTTCAAAA-TCAACTCA-ATTG
1 GTTTTCAAAATTCAACTCATATTG
2816 GAAGGTGATA
Statistics
Matches: 1935, Mismatches: 287, Indels: 209
0.80 0.12 0.09
Matches are distributed among these distances:
61 3 0.00
62 4 0.00
63 9 0.00
65 18 0.01
66 31 0.02
67 69 0.04
68 68 0.04
69 61 0.03
70 203 0.10
71 346 0.18
72 571 0.30
73 99 0.05
74 37 0.02
75 66 0.03
76 141 0.07
77 166 0.09
78 28 0.01
79 15 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (72 bp):
GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
AATTTCT
Found at i:1878 original size:148 final size:143
Alignment explanation
Indices: 421--4220 Score: 3551
Period size: 148 Copynumber: 26.3 Consensus size: 143
411 GACACGTTGA
* * *
421 GTTTTC-AAATTCAA-TAAATATTGCGAG-AATGA-TTGAGTCTCAAGACA--TCTGATGTATTT
1 GTTTTCAAAATTCAACT-CATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT-TGAGGTATTT
* * * *
480 TCAATTTCT-TTTTTAAAAA-TCAA--C-TATTGCGATAGGTGAGTTGAGCCTC-GGACACGCTG
64 TCAATTTCTGTTTTCAAAAATTCAACTCATATTGAGA-A-ATGAGTTGAGCCTCAAGACACGCTG
*
539 AGGTAATTTCAATTTAT
127 AGGTAATTTCAATTTCT
*
556 GTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTC-AGACACGTTGAGGTA-TTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* ** * *
619 AATTTCTCTTTTCAAAAA-TC-ACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCT
66 AATTTCTGTTTTCAAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAG---ACACGCT
* * *
681 GAGGCATTTTCAATTTTT
126 GAGGTAATTTCAATTTCT
*
699 GTTTTCAAAAAAAATTCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
1 GTTTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
*
763 TTTCAATTTCTGTTTTC-AAAA-TC-ACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGT
62 TTTCAATTTCTGTTTTCAAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAGACACGC
*
825 TGAGGTAATTTCAATTTAT
125 TGAGGTAATTTCAATTTCT
* * * * *
844 GTTTTCAAAATTCAA-T-ATATTGCGAGACATGAGTTGAGTCTCAAGACATGCTGATGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* * * * * **
907 AATTTCTATTTTTTTAAATAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGACACGCT
66 AATTTC--TGTTTTCAAA-AATTCAACTCATATTGAGA-A-ATGAGTTGAGCCTCAAGACACGCT
972 GAGGTAATTTCAATTTCT
126 GAGGTAATTTCAATTTCT
* **
990 GTTTTCAAAATTCAACTCTTATTATGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* ** * * *
1055 AATTTCTGTTTTC-AAAA-TCAACTCAGATTGCGAGAGGTGAGTTGAGGCTC-CGTTCACATGCT
66 AATTTCTGTTTTCAAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAG---ACACGCT
* *
1117 GAGGTATTTTAAATTTCT
126 GAGGTAATTTCAATTTCT
* * * *
1135 GTCTTTGAAAAAAATT-TACT-AT-TTACGAG---TTAGTTGA-CCTCAAGA-ACGTTGAGGTAT
1 GT-TTT---CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
* * * * *
1192 TTTC-ATTTCT-ATTTCAGAAA-T--ACTCATATTGCGAGAGTGAGTTGAGCCTCAAGACACGTT
62 TTTCAATTTCTGTTTTCAAAAATTCAACTCATATTGAGA-AATGAGTTGAGCCTCAAGACACGCT
1252 GAGGTAATTTCAATTTCT
126 GAGGTAATTTCAATTTCT
* *
1270 GTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* * * * * * *
1335 AA-TTATGTTTTC-AAAATTCAATTAATATTGCGAGACATGAGTTGAGTCTCAAGACATGCTGAT
66 AATTTCTGTTTTCAAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
1398 GTATTTTCAATTTCTATTT
129 GTAATTTCAATTTC----T
* * * * ** ** * *
1417 TTTTTAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
1 GTTTT-CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
* *
1482 CAATTTCTGTTTTC-AAAATTCAACTCTTATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGA
65 CAATTTCTGTTTTCAAAAATTCAACTCATA-T-TGAGAAATGAGTTGAGCCTCAAGACACGCTGA
*
1546 GGTATTTTCAATTTCT
128 GGTAATTTCAATTTCT
* * ** * * * *
1562 GTTTTCAAAAATCAACTCAGATTGCGAGAGGTGAGTTGAGGCTC-CGTTCACATGCTGAGGTATT
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTATT
* * *
1626 TTAAATTTCTGTCTTTCAAAAAAAATTTAACTCATATTAGAGAAATTAGTTGAGCCTCAAGACAC
63 TTCAATTTCTGT-TTTC---AAAAATTCAACTCATATT-GAGAAATGAGTTGAGCCTCAAGACAC
* *
1691 GTTGAGGTATTTTCAATTTCT
123 GCTGAGGTAATTTCAATTTCT
* * ** ** * *
1712 ATTTTCAGAAA--AAACTCATATTGCGAGAGGTGAGTTGAGCCTCGATTCACATGCTGAGGTATT
1 GTTTTCA-AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-A-AGACACGTTGAGGTATT
*
1775 CTCAATTTCTGTCTTTCAAAATAATTCAACTCATATGTGAGAAATGAGTTGAGCCTCAAGACACG
63 TTCAATTTCTGT-TTTC-AAA-AATTCAACTCATAT-TGAGAAATGAGTTGAGCCTCAAGACACG
*
1840 TTGAGGTAATTTCAATTTCT
124 CTGAGGTAATTTCAATTTCT
* * * *
1860 G-TTTCCAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTT
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* * ** ** *
1924 AATTTCTATTTTTCAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGC
66 AATTTCT-GTTTTC---AAAAATTCAACTCATATTG--AGAAATGAGTTGAGCCTCAAGACACGC
1989 TGAGGTAATTTCAATTTCT
125 TGAGGTAATTTCAATTTCT
* *
2008 GTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
*
2073 AATTTCTGTTTTC-AAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAG
66 AATTTCTGTTTTCAAAAATTCAACTCATATTG--AGAAATGAGTTGAGCCTCAAGACACGCTGAG
2137 GTAATTTCAATTT-T
129 GTAATTTCAATTTCT
* * *
2151 GGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTAAGCCTCAAGACATGCTGAGGTATTTT
1 -GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
* * * * ** **
2216 CAATTTTTGTTTTTTTAAAAAAATAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGC
65 CAATTTCTG---TTTTCAAAAATTCAACTCATATTG--AGAAATGAGTTGAGCCTCAAGACACGC
2281 TGAGGTAATTTCAATTTCT
125 TGAGGTAATTTCAATTTCT
* * ** ** * * *
2300 G-TTTCAGAATTCAAATCATATTGCGAGATGTGAGTTGAGCCTCGGGACACGCTGAGATAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* *
2364 AATTTCTGTTTTC-AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAACACACGTTGAG
66 AATTTCTGTTTTCAAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
2428 GTATTTTCAATTTCT
129 GTAATTTCAATTTCT
* * * **
2443 CTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* * *
2507 AATTTCTGTTTTC-AAAATTCAACTCAAATGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
66 AATTTCTGTTTTCAAAAATTCAACTCATAT-TGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
2571 TAATTTCAATTTCT
130 TAATTTCAATTTCT
* * * *
2585 GTTTTCAAAATTCAA-TCATACTGCAAGAAATGACTTGAGCTCTCAAGACACGTTGATGCTATTT
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGC-CTCAAGACACGTTGA-GGTATTT
* * * * *
2649 TCAA-TTCTGTTTTTAGAAA-T-AACTCATATTGCGATAGGTGAGTTGAGCCTC-GGACACGCTG
64 TCAATTTCTGTTTTCAAAAATTCAACTCATATTGAGA-A-ATGAGTTGAGCCTCAAGACACGCTG
*
2710 AGGT-ATCTCAATTTCT
127 AGGTAATTTCAATTTCT
2726 G-TTTCAAAATTC-ACTC-TATTG-GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* * * **
2787 AATTTCTGTTTTC-AAAA-TCAACTCA-ATTG-G-AA-G-G-TGA---T--AG-C-TGTTCATTT
66 AATTTCTGTTTTCAAAAATTCAACTCATATTGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
* *
2837 GATTT-TATTT-T
131 AATTTCAATTTCT
* * *
2848 -TCTTTCAAAAATT--ACTCATATTACGAGAAATGACTTGAGCCTCAAGACACGTTGAGCTATTT
1 GT-TTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
* * * ** * *
2910 TCAATATCTGTTTTCAGAAA-TAAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATG
64 TCAATTTCTGTTTTCAAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAG---ACACG
* *
2973 TTGAGGTATTTTCAATTTCT
124 CTGAGGTAATTTCAATTTCT
* *
2993 GTTTTCAAAATTCAGCTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
*
3058 AATTTCTGTTTTC--AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
66 AATTTCTGTTTTCAAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
3121 GTATTTTCAATTTCT
129 GTAATTTCAATTTCT
* ** ** ** *
3136 GTTTTTCAAAAAAAAAATCAACTCATATTGAAAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT
1 G-TTTTC-----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* * * * *
3201 AATTTAAATTTCTGTTTTC-AAAATTCAAATTATATTACCAGAAATGAGTTGAGCCTCAAGACAC
60 ATTTTCAATTTCTGTTTTCAAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAGACAC
*
3265 G-TGAGGTATTTTCAATTTCT
123 GCTGAGGTAATTTCAATTTCT
* * ** * *
3285 GTTTACAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCAC-TTGCGGAGGTAT
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTT---GAGGTAT
*
3348 TTTCAATTTCCGTCTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
62 TTTCAATTTCTGT-TTTC--AAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAGACA
* * *
3413 CGTTTAGTTAATTTCAATTTCT
122 CGCTGAGGTAATTTCAATTTCT
* *
3435 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* ** **
3500 AATTTCTGTTTTCAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACGCT
66 AATTTCTGTTTTC---AAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAGACACGCT
** * *
3565 TTGGTAATTTTAATTTTT
126 GAGGTAATTTCAATTTCT
* *
3583 GTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAACACACGTTGAGGTA-TTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* ** * *
3647 AATTTCTCTTTTCAAAAA-TCAACTCATATTACGAGAGGTGAGTTTAGCCTCAAGACACGTTGAG
66 AATTTCTGTTTTCAAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAGACACGCTGAG
3711 GTAATTTCAATTTCT
129 GTAATTTCAATTTCT
* *
3726 GTTTTCAAAATTCAACTCAAATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* * *
3791 AATTTCTGTTTTC-AAAATTCAACTCATACTGCAAGAAATGAGTTGATCCTCAAGACACGTTGAG
66 AATTTCTGTTTTCAAAAATTCAACTCATATTG--AGAAATGAGTTGAGCCTCAAGACACGCTGAG
3855 GTAATTTCAATTTCT
129 GTAATTTCAATTTCT
* * * * * * *
3870 GTTTTCAAAATTCAATTAATATTGCGAGAAATGAGTTGAGTCTGAAGACATGCTGATGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* * * * * **
3935 AATTTCTGTTTTTTAAAAAAACAATCAACTCATATTGCGATAGGTGAGTTGAGCATCGGGACACG
66 AATTTCTG--TTTT--CAAAA-ATTCAACTCATATTGAGA-A-ATGAGTTGAGCCTCAAGACACG
*
4000 CTGAGGTAATCTCAATTTCT
124 CTGAGGTAATTTCAATTTCT
* *
4020 GTTTTCAAAATTCAACTCTTATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
** * **
4085 AATTTCTGTTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATTCT
66 AATTTCTGTTTTCAAAAATTCAACTCATATT--GAGAAATGAGTTGAGCCTCAAG---ACACGCT
*
4148 GAGGTATTTTCAATTTCT
126 GAGGTAATTTCAATTTCT
* * *
4166 TTCTTTCAAAAAAAATTCAACTCATATTACGAGAAATGACTTGAGCCTCAAGACA
1 GT-TTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
Statistics
Matches: 3103, Mismatches: 381, Indels: 346
0.81 0.10 0.09
Matches are distributed among these distances:
122 1 0.00
123 16 0.01
124 14 0.00
125 51 0.02
126 11 0.00
127 3 0.00
129 4 0.00
130 2 0.00
131 7 0.00
132 4 0.00
133 4 0.00
134 13 0.00
135 30 0.01
136 38 0.01
137 74 0.02
138 57 0.02
139 32 0.01
140 97 0.03
141 59 0.02
142 123 0.04
143 398 0.13
144 412 0.13
145 117 0.04
146 253 0.08
147 181 0.06
148 456 0.15
149 322 0.10
150 265 0.09
151 59 0.02
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (143 bp):
GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
AATTTCTGTTTTCAAAAATTCAACTCATATTGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
AATTTCAATTTCT
Found at i:3142 original size:72 final size:72
Alignment explanation
Indices: 2861--4220 Score: 1507
Period size: 72 Copynumber: 18.5 Consensus size: 72
2851 TTCAAAAATT
* * * *
2861 ACTCATATTACGAGAAATGACTTGAGCCTCAAGACACGTTGAGCTATTTTCAATATCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
*
2926 GAAA-TAA
66 -AAATTCA
** * *
2933 ACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGTTGAGGTATTTTCAATTTCTGTTT
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTATTTTCAATTTCTGTTT
2997 TCAAAATTCA
63 TCAAAATTCA
* *
3007 GCTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC-
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
3071 AAATTCA
66 AAATTCA
3078 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTC
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG-TTTTC
*
3143 AAAAAAAAAATCA
65 -----AAAATTCA
** ** ** * * *
3156 ACTCATATTGAAAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTAAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
3221 AAATTCA
66 AAATTCA
* * * * *
3228 AATTATATTACCAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTTTCAATTTCTGTTTACA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
*
3292 AAAATCA
66 AAATTCA
** * * *
3299 ACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCAC-TTGCGGAGGTATTTTCAATTTCCGTC
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTT---GAGGTATTTTCAATTTCTGT-
3362 TTTCAAAAAAATTCA
61 TTTC---AAAATTCA
* * *
3377 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTTAGTTAATTTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
3442 AAATTCA
66 AAATTCA
* *
3449 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTC-
*
3514 AAAAAAAATCA
65 ---AAAATTCA
* ** ** * *
3525 ACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACGCTT-TGGTAATTTT-AATTTTTGTTTT
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TTGAGGT-ATTTTCAATTTCTGTTTT
3588 CAAAATTCA
64 CAAAATTCA
* * *
3597 ACTCATATTACGAGAAATGAGTTGAGCCTCAACACACGTTGAGGTA-TTTCAATTTCTCTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
*
3661 AAAATCA
66 AAATTCA
* ** * *
3668 ACTCATATTACGAGAGGTGAGTTTAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
3733 AAATTCA
66 AAATTCA
* *
3740 ACTCAAATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
3805 AAATTCA
66 AAATTCA
* * * *
3812 ACTCATACTGCAAGAAATGAGTTGATCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
3877 AAATTCA
66 AAATTCA
* * * * * * *
3884 ATTAATATTGCGAGAAATGAGTTGAGTCTGAAGACATGCTGATGTATTTTCAATTTCTGTTTTTT
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG--TTTT
* *
3949 AAAAAAACAATCA
64 ---CAAA-ATTCA
* ** * ** * * *
3962 ACTCATATTGCGATAGGTGAGTTGAGCATCGGGACACGCTGAGGTAATCTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
4027 AAATTCA
66 AAATTCA
* *
4034 ACTCTTATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
*
4099 AAAATCA
66 AAATTCA
** * * * *
4106 ACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATTCTGAGGTATTTTCAATTTCTTTCT
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACAC-GT-TGAGGTATTTTCAATTTCTGT-T
4170 TTCAAAAAAAATTCA
62 TTC----AAAATTCA
* *
4185 ACTCATATTACGAGAAATGACTTGAGCCTCAAGACA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
Statistics
Matches: 1085, Mismatches: 156, Indels: 87
0.82 0.12 0.07
Matches are distributed among these distances:
70 4 0.00
71 186 0.17
72 505 0.47
73 7 0.01
74 101 0.09
75 12 0.01
76 74 0.07
77 14 0.01
78 143 0.13
79 38 0.04
80 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (72 bp):
ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
AAATTCA
Found at i:4056 original size:150 final size:144
Alignment explanation
Indices: 2861--4220 Score: 1537
Period size: 150 Copynumber: 9.2 Consensus size: 144
2851 TTCAAAAATT
* * * * *
2861 ACTCATATTACGAGAAATGACTTGAGCCTCAAGACACGTTGAGCTATTTTCAATATCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCA
* * * * *
2926 GAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGTTGAGGTATTTTCAATT
66 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGGTAATTTCAATT
2990 TCTGTTTTCAAAATTCA
128 TCTGTTTTCAAAATTCA
* * *
3007 GCTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC-
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCA
* ** *
3071 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
66 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
*
3136 GTTTTTCAAAAAAAAAATCA
131 G-TTTTC-----AAAATTCA
** ** ** * *
3156 ACTCATATTGAAAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTAAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCA
* * * * * ** *
3221 AAATTCAAATTATATTACCAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTATTTTCAATTTCT
66 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
* *
3285 GTTTACAAAAATCA
131 GTTTTCAAAATTCA
** * * * *
3299 ACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACTTGCGGAGGTATTTTCAATTTCCGTCT
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACAC--GCTGAGGTATTTTCAATTTCTGT-T
** * *
3363 TTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTTAGTTAATTTC
62 TTC--AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
3428 AATTTCTGTTTTCAAAATTCA
124 AATTTCTGTTTTCAAAATTCA
*
3449 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTC-
* ** * *
3514 AAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACGCTT-TGGTAATTTTAA
65 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG-TTGAGGTAATTTCAA
*
3578 TTTTTGTTTTCAAAATTCA
126 TTTCTGTTTTCAAAATTCA
* * * *
3597 ACTCATATTACGAGAAATGAGTTGAGCCTCAACACACGTTGAGGTA-TTTCAATTTCTCTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCA
* *
3661 AAAATCAACTCATATTACGAGAGGTGAGTTTAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
66 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
3726 GTTTTCAAAATTCA
131 GTTTTCAAAATTCA
* * *
3740 ACTCAAATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCA
* * * ** *
3805 AAATTCAACTCATACTGCAAGAAATGAGTTGATCCTCAAGACACGTTGAGGTAATTTCAATTTCT
66 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
3870 GTTTTCAAAATTCA
131 GTTTTCAAAATTCA
* * * * * *
3884 ATTAATATTGCGAGAAATGAGTTGAGTCTGAAGACATGCTGATGTATTTTCAATTTCTGTTTTTT
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG--TTTT
* * * ** * *
3949 AAAAAAACAATCAACTCATATTGCGATAGGTGAGTTGAGCATCGGGACACGCTGAGGTAATCTCA
64 ---CAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
4014 ATTTCTGTTTTCAAAATTCA
125 ATTTCTGTTTTCAAAATTCA
* * *
4034 ACTCTTATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCA
* * * *
4099 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATTCTGAGGTATTTTCAATT
66 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACAC-GT-TGAGGTAATTTCAATT
*
4163 TCTTTCTTTCAAAAAAAATTCA
128 TCTGT-TTTC----AAAATTCA
* *
4185 ACTCATATTACGAGAAATGACTTGAGCCTCAAGACA
1 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
Statistics
Matches: 1050, Mismatches: 128, Indels: 67
0.84 0.10 0.05
Matches are distributed among these distances:
142 4 0.00
143 180 0.17
144 179 0.17
145 54 0.05
146 85 0.08
147 24 0.02
148 138 0.13
149 131 0.12
150 214 0.20
151 41 0.04
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (144 bp):
ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCA
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
GTTTTCAAAATTCA
Done.