Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 121513442
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5870000 characters in sequence are not A, C, G, or T
File 144 of 366
Found at i:47714288 original size:51 final size:49
Alignment explanation
Indices: 47714221--47714438 Score: 181
Period size: 51 Copynumber: 4.4 Consensus size: 49
47714211 CTGATACATG
* * *
47714221 TAGTAGCCCGCACTTAGTACTACACACGTGATTGAAGTTAACTGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-CTAACTGGTAC-CA
*** * * * * *
47714272 TAGTAGCCTGCACTTAGTACTACACATACGACCTATC-AATCCGGTACAA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAACTAA-CTGGTACCA
* * * * *
47714321 GTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATA-CA
1 -TAGTAGCCTGCACTTAGTACTACACACGTGATCGAACTAACTGGTACCA
* * * *
47714370 -AGTAGCCTGTACTTAGTATTACACACGTGATCGAAACTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCG-AACTAACTGGTAC-CA
47714420 TAGTAGCCTGCACTTAGTA
1 TAGTAGCCTGCACTTAGTA
47714439 GTAACATGCG
Statistics
Matches: 133, Mismatches: 27, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
47 29 0.22
48 9 0.07
49 4 0.03
50 45 0.34
51 46 0.35
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCGAACTAACTGGTACCA
Found at i:47714297 original size:101 final size:101
Alignment explanation
Indices: 47714171--47714352 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
47714161 CTGGTACATG
* ** * * * *
47714171 TAGTAGCCTGCACTTAGTGCTACACATGTGACTTATCCATCTGATACATGTAGTAGCCCGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCCGATACAAGTAGTAGCCCGCACTT
47714236 AGTACTACACACGTGATTGAAGTTAACTGGTACGCA
66 AGTACTACACACGTGATTGAAGTTAACTGGTACGCA
* *
47714272 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCCGGTACAAGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCCGATACAAGTAGTAGCCCGCACTT
47714337 AGTACTACACACGTGA
66 AGTACTACACACGTGA
47714353 CCTAACCATC
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCCGATACAAGTAGTAGCCCGCACTT
AGTACTACACACGTGATTGAAGTTAACTGGTACGCA
Found at i:47714441 original size:151 final size:150
Alignment explanation
Indices: 47714113--47714504 Score: 506
Period size: 151 Copynumber: 2.6 Consensus size: 150
47714103 AAAGCTTTCT
* * * *
47714113 GGTACGTATTGTAGCCTGCAC-ATAGTACTACAGATGCGACCTATCAATCTGGTACATGTAGTAG
1 GGTACGCATAGTAGCCTGCACTATAGTACTACACATGCGACCTATCAATCTGGTACAAGTAGTAG
* * *
47714177 CCTGCACTTAGTGCTACACATGTGACTTATCCATCTGATACATGTAGTAGCCCGCACTTAGTACT
66 CCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACA--TAGTAGCCCGCACTTAGTACT
* ** *
47714242 ACACACGTGATTGAAGTTAACT
129 ACACACGTGATCGAAACTAACG
* *
47714264 GGTACGCATAGTAGCCTGCACT-TAGTACTACACATACGACCTATCAATCCGGTACAAGTAGTAG
1 GGTACGCATAGTAGCCTGCACTATAGTACTACACATGCGACCTATCAATCTGGTACAAGTAGTAG
* * * *
47714328 CCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA-AGTAGCCTGTACTTAGTATTAC
66 CCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACATAGTAGCCCGCACTTAGTACTAC
*
47714392 ACACGTGATCGAAACTATCG
131 ACACGTGATCGAAACTAACG
* * * * *
47714412 GGTACGCATAGTAGCCTGCACT-TAGTAGTA-ACATGCGGCCTAACAATCTAGTACACGTAGTAG
1 GGTACGCATAGTAGCCTGCACTATAGTACTACACATGCGACCTATCAATCTGGTACAAGTAGTAG
* *
47714475 CCTACACTTAGTACTATACATGTGACCTAA
66 CCTGCACTTAGTACTACACATGTGACCTAA
47714505 AACTGTCTTA
Statistics
Matches: 212, Mismatches: 28, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
147 54 0.25
148 63 0.30
151 95 0.45
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTATAGTACTACACATGCGACCTATCAATCTGGTACAAGTAGTAG
CCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACATAGTAGCCCGCACTTAGTACTAC
ACACGTGATCGAAACTAACG
Found at i:47723467 original size:101 final size:100
Alignment explanation
Indices: 47723212--47723641 Score: 278
Period size: 101 Copynumber: 4.2 Consensus size: 100
47723202 TGGTACGCAC
* * * * * * * * * *
47723212 AGTAGCCTGCACTTAGTACTATACATGCAACCTATCAATCCGGTACACGTAGTATCATGCACTTA
1 AGTAGCCTGCACTTAATACTACACACGCGACCTAACAATCTGATACATGTAGTAGCCTGCACTTA
* * * * * * *
47723277 GTATTACACACGTGACTTATCCATCTGATACACGT
66 GTACTACACACGTGACCTAACAATCGGCTACACAT
* * ** * * * * * *
47723312 AGTAGCCCGCACTTAGTACTACACACATGATCGAAGTTAA-CGGGT--ATGCATAGTAGCTTGCA
1 AGTAGCCTGCACTTAATACTACACACGCGACCTAA--CAATCTGATACATG--TAGTAGCCTGCA
* * *
47723374 CTTAGTACTACACATGTGACCTATCAATCCGG-TACACGT
62 CTTAGTACTACACACGTGACCTAACAAT-CGGCTACACAT
* * * * * *
47723413 AGTAGCCTGCACTTAAGTACTACACACGTGACTTGACCATCTGATCCATGTAGTATCCTGCACTT
1 AGTAGCCTGCACTTAA-TACTACACACGCGACCTAACAATCTGATACATGTAGTAGCCTGCACTT
* ** * * **
47723478 AGTACTACACACCTGATCGAAACTATTGGCTATGCAT
65 AGTACTACACACGTGA-CCTAACAATCGGCTACACAT
* * *
47723515 AGTGGCCTGCACTTAATACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCACTTA
1 AGTAGCCTGCACTTAATACTACACACGCGACCTAACAATCTGATACATGTAGTAGCCTGCACTTA
*
47723580 GTACTACACACGTGACCTAA-AA-CTGTCTTAAACACAT
66 GTACTACACACGTGACCTAACAATC-GGC-T--ACACAT
* *
47723617 AGTAGCCTGCACATAGTACTACACA
1 AGTAGCCTGCACTTAATACTACACA
47723642 TGTGTTCTCA
Statistics
Matches: 253, Mismatches: 62, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
99 5 0.02
100 31 0.12
101 146 0.58
102 68 0.27
103 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (100 bp):
AGTAGCCTGCACTTAATACTACACACGCGACCTAACAATCTGATACATGTAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACAATCGGCTACACAT
Found at i:47723512 original size:152 final size:151
Alignment explanation
Indices: 47723212--47723595 Score: 545
Period size: 152 Copynumber: 2.5 Consensus size: 151
47723202 TGGTACGCAC
* * * *
47723212 AGTAGCCTGCACTTAGTACTATACATGCAACCTATCAATCCGGTACACGTAGTATCATGCACTTA
1 AGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTGCACTTA
*
47723277 GTATTACACACGTGACTTATCCATCTGATACACGTAGTAGCCCGCACTTAGTACTACACACATGA
66 GTACTACACACGTGACTTATCCATCTGATACACGTAGTAGCCCGCACTTAGTACTACACACATGA
** *
47723342 TCGAAGTTAACGGGTATGCAT
131 TCGAAACTAACGGCTATGCAT
* *
47723363 AGTAGCTTGCACTTAGTACTACACATGTGACCTATCAATCCGGTACACGTAGTAGCCTGCACTTA
1 AGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTGCACTT-
* * * * *
47723428 AGTACTACACACGTGACTTGA-CCATCTGATCCATGTAGTATCCTGCACTTAGTACTACACACCT
65 AGTACTACACACGTGACTT-ATCCATCTGATACACGTAGTAGCCCGCACTTAGTACTACACACAT
**
47723492 GATCGAAACTATTGGCTATGCAT
129 GATCGAAACTAACGGCTATGCAT
* * * * *
47723515 AGTGGCCTGCACTTAATACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCACTTA
1 AGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTGCACTTA
47723580 GTACTACACACGTGAC
66 GTACTACACACGTGAC
47723596 CTAAAACTGT
Statistics
Matches: 207, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
151 75 0.36
152 131 0.63
153 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (151 bp):
AGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACTTATCCATCTGATACACGTAGTAGCCCGCACTTAGTACTACACACATGA
TCGAAACTAACGGCTATGCAT
Found at i:47723599 original size:50 final size:50
Alignment explanation
Indices: 47723212--47723599 Score: 293
Period size: 50 Copynumber: 7.7 Consensus size: 50
47723202 TGGTACGCAC
* * ** * * *
47723212 AGTAGCCTGCACTTAGTACTATACATGCAACCTATCAATCCGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACATGT
* * * * * * * *
47723262 AGTATCATGCACTTAGTATTACACACGTGACTTATCCATCTGATACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACATGT
* * * * * *
47723312 AGTAGCCCGCACTTAGTACTACACACATGATCGAAGTTAA-CGGGT--ATGCAT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAATCTGGTACATG--T
* * * * *
47723363 AGTAGCTTGCACTTAGTACTACACATGTGACCTATCAATCCGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACATGT
* * * * *
47723413 AGTAGCCTGCACTTAAGTACTACACACGTGACTTGACCATCTGATCCATGT
1 AGTAGCCTGCACTT-AGTACTACACACGTGACCTAACAATCTGGTACATGT
* * ** *
47723464 AGTATCCTGCACTTAGTACTACACACCTGATCGAAACTAT-TGG--CTATGCAT
1 AGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAATCTGGTAC-ATG--T
* * * *
47723515 AGTGGCCTGCACTTAATACTACACATGCGACCTAACAATCTGGTACATGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACATGT
47723565 AGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAA
47723600 AACTGTCTTA
Statistics
Matches: 258, Mismatches: 65, Indels: 30
0.73 0.18 0.08
Matches are distributed among these distances:
48 1 0.00
49 7 0.03
50 138 0.53
51 105 0.41
52 6 0.02
53 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACATGT
Found at i:47733623 original size:101 final size:100
Alignment explanation
Indices: 47733485--47733814 Score: 294
Period size: 99 Copynumber: 3.3 Consensus size: 100
47733475 ATATGTACTT
* * * *
47733485 GCCTGCTCTTAGTACTACACACTTGACTTATCCATCTGATACACGTAGTAGCCCGCACTTAGTAC
1 GCCTGCACTTAGTACTACACACTCGACCTATCAATCTGATACACGTAGTAGCCCGCACTTAGTAC
* * * *
47733550 TACACACGTGATCGAAGTTAA-CGGGTACGCATAGTA
66 TACACACGTGACCGAA--CAATCGGATACACATAGTA
* **
47733586 GCCTGCACTTAGTACTACACA-TGCGACCTATCAATCTGGTACACGTAGTAGCTTGCACTTAGTA
1 GCCTGCACTTAGTACTACACACT-CGACCTATCAATCTGATACACGTAGTAGCCCGCACTTAGTA
* * *
47733650 CTACACACGTGACCTAACAATCTGATACACGTAGTA
65 CTACACACGTGACCGAACAATCGGATACACATAGTA
* ** * * * * * * *
47733686 GCCTGCACTTAGTACTACAC-GT-GATCGAAACTATCGGGTACGCATAGTAGCCTGCACTTAGTA
1 GCCTGCACTTAGTACTACACACTCGA-CCTATCAATCTGATACACGTAGTAGCCCGCACTTAGTA
* * * * *
47733749 CTACACATGCGACCTAACAATCTTG-TACACGTAGTA
65 CTACACACGTGACCGAACAATC-GGATACACATAGTA
*
47733785 GCCTGCATTTAGTACTACACACAT-GACCTA
1 GCCTGCACTTAGTACTACACAC-TCGACCTA
47733815 AAACTGTCTT
Statistics
Matches: 194, Mismatches: 28, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
98 2 0.01
99 82 0.42
100 37 0.19
101 73 0.38
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (100 bp):
GCCTGCACTTAGTACTACACACTCGACCTATCAATCTGATACACGTAGTAGCCCGCACTTAGTAC
TACACACGTGACCGAACAATCGGATACACATAGTA
Found at i:47733777 original size:149 final size:150
Alignment explanation
Indices: 47733422--47733815 Score: 592
Period size: 151 Copynumber: 2.6 Consensus size: 150
47733412 AAAGCTCTCT
* * * * * *
47733422 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCTATCAATCTGGTATATGTACTTGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * *
47733487 CTGCTCTTAGTACTACACACTTGACTTATCCATCTGATACACGTAGTAGCCCGCACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACCTAACAATCTGATACACGTAGTAGCCCGCACTTAGTACTA
**
47733552 CACACGTGATCGAAGTTAACG
131 -ACACGTGATCGAAACTAACG
47733573 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
47733638 TTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACT-
66 CTGCACTTAGTACTACACACATGACCTAACAATCTGATACACGTAGTAGCCCGCACTTAGTACTA
*
47733702 ACACGTGATCGAAACTATCG
131 ACACGTGATCGAAACTAACG
* *
47733722 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTTGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
47733787 CTGCATTTAGTACTACACACATGACCTAA
66 CTGCACTTAGTACTACACACATGACCTAA
47733816 AACTGTCTTA
Statistics
Matches: 222, Mismatches: 21, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
149 106 0.48
151 116 0.52
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACATGACCTAACAATCTGATACACGTAGTAGCCCGCACTTAGTACTA
ACACGTGATCGAAACTAACG
Found at i:47733813 original size:50 final size:50
Alignment explanation
Indices: 47733419--47733815 Score: 386
Period size: 50 Copynumber: 7.9 Consensus size: 50
47733409 ACCAAAGCTC
* * **** *
47733419 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * * * * * *
47733469 TCTGGTATATGTACTTGCCTGCTCTTAGTACTACACACTTGACTTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * *
47733519 TCTGATACACGTAGTAGCCCGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAA
* * * * * *
47733571 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
*
47733620 TCTGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* ** *
47733670 TCTGATACACGTAGTAGCCTGCACTTAGTACT--ACACGTGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAA
* * * * *
47733719 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * *
47733769 TCTTGTACACGTAGTAGCCTGCATTTAGTACTACACACATGACCTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
47733816 AACTGTCTTA
Statistics
Matches: 274, Mismatches: 67, Indels: 12
0.78 0.19 0.03
Matches are distributed among these distances:
48 8 0.03
49 35 0.13
50 188 0.69
51 42 0.15
52 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:47734978 original size:14 final size:14
Alignment explanation
Indices: 47734959--47734991 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
47734949 CCCAAACATC
47734959 AAAATTTTTAAAAA
1 AAAATTTTTAAAAA
47734973 AAAA-TTTTAAAAA
1 AAAATTTTTAAAAA
*
47734986 ATAATT
1 AAAATT
47734992 CCATAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAAATTTTTAAAAA
Found at i:47735540 original size:47 final size:47
Alignment explanation
Indices: 47735420--47735589 Score: 197
Period size: 47 Copynumber: 3.6 Consensus size: 47
47735410 GTAAGGTGCC
*
47735420 GATGCCATGTCCGAGACATGGTCTTACACTAGCTCACATCTCAAGTC
1 GATGCCATGTCCGAGACATGGTCTTACACTAGCTCACATCTCAAGTT
* **
47735467 CATGCCATGTCCGAGACACAGTCTTACACTAGCTCACATCTCAAGTT
1 GATGCCATGTCCGAGACATGGTCTTACACTAGCTCACATCTCAAGTT
* * *
47735514 GATGCCATGTACC-AGACATGGACTTACACT-GACT-ATCATCTCGTAGCT
1 GATGCCATGT-CCGAGACATGGTCTTACACTAG-CTCA-CATCTC-AAGTT
*
47735562 GATG-CATGTCCCAGACAT-GTCTTACACT
1 GATGCCATGTCCGAGACATGGTCTTACACT
47735590 GGCTTACGTC
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
46 13 0.12
47 85 0.79
48 9 0.08
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (47 bp):
GATGCCATGTCCGAGACATGGTCTTACACTAGCTCACATCTCAAGTT
Found at i:47735602 original size:46 final size:46
Alignment explanation
Indices: 47735420--47735637 Score: 185
Period size: 47 Copynumber: 4.7 Consensus size: 46
47735410 GTAAGGTGCC
*
47735420 GATGCCATGTCCGAGACATGGTCTTACACTAGCTCACATCTCAAG-T
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTCACATCTCAAGCT
* * * *
47735466 CCATGCCATGTCCGAGACACAGTCTTACACTAGCTCACATCTCAAGTT
1 -GATGCCATGTCCCAGACA-TGTCTTACACTAGCTCACATCTCAAGCT
* * *
47735514 GATGCCATGTACCAGACATGGACTTACACT-GACT-ATCATCTCGTAGCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTAG-CTCA-CATCTC-AAGCT
* * * * *
47735562 GATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTC-AAGCT
* * *
47735608 GATG-CATGTCCCAAAAATGTCTTATACTAG
1 GATGCCATGTCCCAGACATGTCTTACACTAG
47735638 AACTCGTCTC
Statistics
Matches: 144, Mismatches: 19, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
46 47 0.33
47 89 0.62
48 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAAGCT
Found at i:47739085 original size:68 final size:68
Alignment explanation
Indices: 47738938--47739093 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
47738928 AGCCGATTTG
* * * * *
47738938 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
47739003 TATC
65 TATA
* *
47739007 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
47739069 ATATAGTA
62 ATATA-TA
47739077 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
47739094 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:47745295 original size:47 final size:46
Alignment explanation
Indices: 47745226--47745487 Score: 278
Period size: 47 Copynumber: 5.6 Consensus size: 46
47745216 TAAGGTACCA
*
47745226 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATCTCAAGTCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATCTCAAGTCG
* * *
47745273 ATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCATTGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTCA-AGTCG
* *
47745321 ATG-CATGCCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCG
1 ATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGTCG
* * * * *
47745366 ATACCATGTCCCAGACATGTCTTACACTGGCACTCGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA-GTCG
* * * * ***
47745413 ATGCCATGTCCTAGACACGATCTTACACTGGCTCTCATAATGTGGTCG
1 ATGCCATGTCCCAGACATG-TCTTACACTGGCTCACAT-CTCAAGTCG
47745461 ATG-CATGTCCCAGACATGTCTTACACT
1 ATGCCATGTCCCAGACATGTCTTACACT
47745488 AGCCCACACA
Statistics
Matches: 181, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
45 5 0.03
46 63 0.35
47 84 0.46
48 28 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGTCG
Found at i:47745475 original size:94 final size:91
Alignment explanation
Indices: 47745245--47745487 Score: 283
Period size: 93 Copynumber: 2.6 Consensus size: 91
47745235 CCCAAACATG
* *
47745245 GTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCA
1 GTCTTACACTGGCTTACATATCAAGTCGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCA
* *
47745310 TCTCATTGCCGATGCATGCCCCAGACAT
64 TCTCAATGCCGATGCATGCCCCAGACAC
* * * *
47745338 GTCTTACACTGGCTTACATCTCAAGTCGATACCATGTCCCAGACATGTCTTACACTGGC-ACTCG
1 GTCTTACACTGGCTTACATATCAAGTCGAT-GCATGTCCCAGACATGTCTTACACTGACTA-TCA
* *
47745402 TCTCAATGCCGATGCCATGTCCTAGACAC
64 TCTCAATGCCGATG-CATGCCCCAGACAC
***
47745431 GATCTTACACTGGCTCT-CATAATGTGGTCGATGCATGTCCCAGACATGTCTTACACT
1 G-TCTTACACTGGCT-TACAT-ATCAAGTCGATGCATGTCCCAGACATGTCTTACACT
47745488 AGCCCACACA
Statistics
Matches: 131, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
91 1 0.01
92 27 0.21
93 55 0.42
94 40 0.31
95 8 0.06
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (91 bp):
GTCTTACACTGGCTTACATATCAAGTCGATGCATGTCCCAGACATGTCTTACACTGACTATCATC
TCAATGCCGATGCATGCCCCAGACAC
Found at i:47745481 original size:140 final size:139
Alignment explanation
Indices: 47745229--47745487 Score: 351
Period size: 140 Copynumber: 1.8 Consensus size: 139
47745219 GGTACCAATG
* * * *
47745229 CCATGTCCCAAACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAGACATGGT
1 CCATGTCCCAAACATGGTCTTACACTGGCACACATCTCAAGCCGATGCCATGTCCCAGACACGAT
*
47745294 CTTACACTGACTATCATCTCATTGCCGATGCATGCCCCAGACATGTCTTACACTGGCTTACATCT
66 CTTACACTGACTATCA-CTAATTGCCGATGCATGCCCCAGACATGTCTTACACTGGCTTACATCT
47745359 CAAGTCGATA
130 CAAGTCGATA
* * * *
47745369 CCATGTCCCAGACAT-GTCTTACACTGGCACTCGTCTCAATGCCGATGCCATGTCCTAGACACGA
1 CCATGTCCCAAACATGGTCTTACACTGGCACACATCTCAA-GCCGATGCCATGTCCCAGACACGA
* * * *
47745433 TCTTACACTGGCTCTCA-TAATGTGGTCGATGCATGTCCCAGACATGTCTTACACT
65 TCTTACACTGACTATCACTAAT-T-GCCGATGCATGCCCCAGACATGTCTTACACT
47745488 AGCCCACACA
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
138 3 0.03
139 22 0.21
140 78 0.76
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.27
Consensus pattern (139 bp):
CCATGTCCCAAACATGGTCTTACACTGGCACACATCTCAAGCCGATGCCATGTCCCAGACACGAT
CTTACACTGACTATCACTAATTGCCGATGCATGCCCCAGACATGTCTTACACTGGCTTACATCTC
AAGTCGATA
Found at i:47746468 original size:21 final size:22
Alignment explanation
Indices: 47746428--47746468 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
47746418 GGCCAAGATC
*
47746428 TTTTAAAATGACCTAATTTTCG
1 TTTTAAAATGACCCAATTTTCG
*
47746450 TTTTAAGAT-ACCCAATTTT
1 TTTTAAAATGACCCAATTTT
47746469 TATTCTCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.32, C:0.15, G:0.07, T:0.46
Consensus pattern (22 bp):
TTTTAAAATGACCCAATTTTCG
Found at i:47752966 original size:46 final size:46
Alignment explanation
Indices: 47752815--47753128 Score: 233
Period size: 46 Copynumber: 6.7 Consensus size: 46
47752805 GGGTAAGGTA
* * * * *
47752815 CCGATGCCATGTCCCAAACACGGTCTTACATTGGCTCACATCTCAAG
1 CCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTTACATCTCAAG
* * * * *
47752862 TCAATGCCATGCCCCAGACATGGTCTTACACTAAC-TATCATCTCGTAG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTTA-CATCTC-AAG
*
47752910 CCGATG-CATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAG
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAG
* * * * * *
47752955 TCGATGCCATGTCCTAGACATGTCTTACATTGGCTTACGTCTCGAGG
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTC-AAG
* * *
47753002 CCGATG-CATGTCCCAAACATCTCTTACACTAGCACT-CATCTCAATG
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGC-TTACATCTCAA-G
* * * * * * ***
47753048 CCGATGCCATGTACTAGACACGGTCTTACACTGGCTTTCATAATGTGG
1 CCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTTACAT-CTCAAG
* *
47753096 CTGATG-CGTGTCCCAGACATGTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGC
47753129 CCACACACAA
Statistics
Matches: 208, Mismatches: 47, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
45 8 0.04
46 97 0.47
47 76 0.37
48 26 0.12
49 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAG
Found at i:47753108 original size:94 final size:92
Alignment explanation
Indices: 47752815--47753129 Score: 271
Period size: 94 Copynumber: 3.4 Consensus size: 92
47752805 GGGTAAGGTA
* * * * * * ** *
47752815 CCGATGCCATGTCCCAAACACGGTCTTACA-TTGGCTCACATCTCAAGTCAATGCCATGCCCCAG
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTAGCCT-ACATCTCAAGCCGATGCCATGTACTAG
** *
47752879 ACATGGTCTTACACTAAC-TATCATCTCGTA-G
63 ACA-GGTCTTACACTGGCTTA-CATATCG-AGG
* * * *
47752910 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAGTCGATGCCATGTCCTAGACA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCCTACATCTCAAGCCGATGCCATGTACTAGACA
* * * *
47752975 TGTCTTACATTGGCTTACGTCTCGAGG
66 GGTCTTACACTGGCTTACATATCGAGG
* *
47753002 CCGATGCATGTCCCAAACATCTCTTACACTAGCACT-CATCTCAATGCCGATGCCATGTACTAGA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC-CTACATCTCAA-GCCGATGCCATGTACTAGA
* *
47753066 CACGGTCTTACACTGGCTTTCATAAT-GTGG
64 CA-GGTCTTACACTGGCTTACAT-ATCGAGG
* *
47753096 CTGATGCGTGTCCCAGACATGTCTTACACTAGCC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCC
47753130 CACACACAAA
Statistics
Matches: 183, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
91 1 0.01
92 55 0.30
93 57 0.31
94 63 0.34
95 7 0.04
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (92 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCCTACATCTCAAGCCGATGCCATGTACTAGACA
GGTCTTACACTGGCTTACATATCGAGG
Found at i:47760918 original size:40 final size:40
Alignment explanation
Indices: 47760832--47761089 Score: 326
Period size: 40 Copynumber: 6.5 Consensus size: 40
47760822 AAGCCAAGTA
* * *
47760832 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
47760870 CCTTCGGGACATAGCCCGGATATCGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
47760910 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
47760950 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
47760990 CCTTCGGGACATAGCTCGAATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
47761030 CCTTCGGGACTTAGCCCGGACCTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACT--CGCACAAATG
47761071 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
47761090 TTATCATCCA
Statistics
Matches: 193, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
38 12 0.06
39 16 0.08
40 137 0.71
41 24 0.12
42 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:47764013 original size:47 final size:46
Alignment explanation
Indices: 47763931--47764140 Score: 228
Period size: 46 Copynumber: 4.5 Consensus size: 46
47763921 GTACCAACGC
* * * * * *
47763931 CATGTCCAAGACACGGTCTTACATTGGCTCACATCT-AAAGTCGATG
1 CATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCGAAGCCGATG
* *
47763977 CGATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGCCGATG
1 C-ATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCGAAGCCGATG
* * *
47764025 CATGTCCCAGACATGTCATACACTGGCTTACGTCTC-AAGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAAGCCGATG
* *
47764070 CCATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAAGCCGATG
*
47764117 CATGTCCCAGACATGTTTTACACT
1 CATGTCCCAGACATGTCTTACACT
47764141 AGCACTCGTC
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
45 7 0.05
46 73 0.53
47 49 0.36
48 8 0.06
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAAGCCGATG
Found at i:47764119 original size:92 final size:93
Alignment explanation
Indices: 47763931--47764192 Score: 280
Period size: 93 Copynumber: 2.8 Consensus size: 93
47763921 GTACCAACGC
* * * * * * * *
47763931 CATGTCCAAGACACGGTCTTACATTGGCTCACATCTAAAGTCGATGCGATGTCCCAGACATGGTC
1 CATGTCCCAGACA-TGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCTAGACAT-GTC
*
47763996 TTACACTGAC-TATCATCTCGTAGCCGATG
64 TTACACTGGCTTATCATCTCGTAGCCGATG
*
47764025 CATGTCCCAGACATGTCATACACTGGCTTACGTCTCAAGTCGATGCCATGTCCTAGACATGTCTT
1 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCTAGACATGTCTT
47764090 ACACTGGCTTA-CATCTCG-AGGCCGATG
66 ACACTGGCTTATCATCTCGTA-GCCGATG
* * * * * * *
47764117 CATGTCCCAGACATGTTTTACACTAGCACT-CGTCTCAATGCCAATGCCATGGCCTAGACACGGT
1 CATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCAA-GTCGATGCCATGTCCTAGACA-TGT
*
47764181 CTTACATTGGCT
63 CTTACACTGGCT
47764193 CTTGTAACAC
Statistics
Matches: 144, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
91 1 0.01
92 58 0.40
93 60 0.42
94 25 0.17
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCTAGACATGTCTT
ACACTGGCTTATCATCTCGTAGCCGATG
Found at i:47765744 original size:43 final size:43
Alignment explanation
Indices: 47765696--47765789 Score: 188
Period size: 43 Copynumber: 2.2 Consensus size: 43
47765686 TCAATAATGT
47765696 CGCACACTTAGTGCCCATATGATTCAAAAATATATATTAAGTC
1 CGCACACTTAGTGCCCATATGATTCAAAAATATATATTAAGTC
47765739 CGCACACTTAGTGCCCATATGATTCAAAAATATATATTAAGTC
1 CGCACACTTAGTGCCCATATGATTCAAAAATATATATTAAGTC
47765782 CGCACACT
1 CGCACACT
47765790 CTGTGCTATA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (43 bp):
CGCACACTTAGTGCCCATATGATTCAAAAATATATATTAAGTC
Found at i:47765812 original size:27 final size:28
Alignment explanation
Indices: 47765782--47765848 Score: 102
Period size: 27 Copynumber: 2.4 Consensus size: 28
47765772 ATATTAAGTC
*
47765782 CGCACACTCT-GTGCTATATAATC-AACT
1 CGCACACT-TAGTCCTATATAATCAAACT
47765809 CGCACACTTAGTCCTATATAATCAAACT
1 CGCACACTTAGTCCTATATAATCAAACT
47765837 CGCACACTTAGT
1 CGCACACTTAGT
47765849 GCTGAACAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
26 1 0.03
27 20 0.54
28 16 0.43
ACGTcount: A:0.31, C:0.30, G:0.10, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTCCTATATAATCAAACT
Found at i:47773383 original size:27 final size:27
Alignment explanation
Indices: 47773353--47773531 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
47773343 ATATTGAGTC
* *
47773353 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
47773380 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
47773407 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
47773435 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
47773462 CGCACACTTTAGTGC-ATCATATTCATTT
1 CGCACAC-TTAGTGCTA-CATAATCAACT
* * *
47773490 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
47773517 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47773532 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 83 0.64
28 46 0.36
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:47773445 original size:55 final size:54
Alignment explanation
Indices: 47773353--47773531 Score: 207
Period size: 55 Copynumber: 3.3 Consensus size: 54
47773343 ATATTGAGTC
* * * * *
47773353 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
47773407 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
47773462 CGCACACTTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACAC-TTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
47773517 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47773532 GTACAATTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
54 27 0.26
55 65 0.62
56 13 0.12
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:47799197 original size:40 final size:40
Alignment explanation
Indices: 47799153--47799414 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
47799143 GCTCCTCGTT
* *
47799153 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
47799193 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
47799233 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
47799272 CAAATGCCTTCAGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
47799311 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
47799350 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
47799391 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47799415 CATCATTCAA
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 126 0.62
40 64 0.32
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:47804510 original size:31 final size:31
Alignment explanation
Indices: 47804472--47804531 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
47804462 TTCATATTTC
*
47804472 ATATTTCATAACACTGGGTTGAAGCCTTTTA
1 ATATTTCATAACACTGGGCTGAAGCCTTTTA
**
47804503 ATATTTCATATTACTGGGCTGAAGCCTTT
1 ATATTTCATAACACTGGGCTGAAGCCTTT
47804532 ACTGTAAACG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (31 bp):
ATATTTCATAACACTGGGCTGAAGCCTTTTA
Found at i:47804775 original size:24 final size:24
Alignment explanation
Indices: 47804725--47804842 Score: 161
Period size: 23 Copynumber: 5.0 Consensus size: 24
47804715 ACTTTATCAT
*
47804725 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
47804750 ATAACTGGGGCAAAATCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47804774 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47804797 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
47804820 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
47804843 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 45 0.53
24 29 0.34
25 11 0.13
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:47804917 original size:20 final size:20
Alignment explanation
Indices: 47804892--47804958 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
47804882 TTATGAATAC
47804892 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
47804912 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
* *
47804932 GTCATGTGCATATCACACAT
1 ATCATGTGCATATCATACAT
*
47804952 ACCATGT
1 ATCATGT
47804959 TTACTAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:47806840 original size:13 final size:13
Alignment explanation
Indices: 47806822--47806846 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47806812 CATATTTTAT
47806822 GTGTGAAAATTTC
1 GTGTGAAAATTTC
47806835 GTGTGAAAATTT
1 GTGTGAAAATTT
47806847 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:47807966 original size:44 final size:43
Alignment explanation
Indices: 47807904--47808029 Score: 146
Period size: 44 Copynumber: 2.9 Consensus size: 43
47807894 AAAAGTCCCA
*
47807904 TTGTGATTTCGTGTAAGACCACGTCTAGGACATTGGCATCAAT
1 TTGTGATTTCGTGTAAGACCACGTCTAGGAAATTGGCATCAAT
* * *
47807947 TTGTGATTTGCGTGTAAGACC-CTGTCTAGGAAAATGGCACCGAT
1 TTGTGATTT-CGTGTAAGACCAC-GTCTAGGAAATTGGCATCAAT
* * * **
47807991 ATGTGATTACATGTAAGACCACGTCTAGGATGTTGGCAT
1 TTGTGATTTCGTGTAAGACCACGTCTAGGAAATTGGCAT
47808030 TGTACTAGCT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
43 33 0.48
44 36 0.52
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TTGTGATTTCGTGTAAGACCACGTCTAGGAAATTGGCATCAAT
Found at i:47812375 original size:42 final size:44
Alignment explanation
Indices: 47812283--47812384 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 44
47812273 AGTTCCAACT
* * * * *
47812283 TCTGGGACGTTGGTATCGATTTGTGATTTACATGTAAGACCATG
1 TCTGGGACATTGGTATCGATATATGACTTACATGTAAGACCATA
* * *
47812327 TTTGGGACATTGGTATCG-TATATGACTT-CGTGTAAGACCCTA
1 TCTGGGACATTGGTATCGATATATGACTTACATGTAAGACCATA
*
47812369 TCTGGGACAGTGGTAT
1 TCTGGGACATTGGTAT
47812385 TAATATTTGT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 25 0.52
43 7 0.15
44 16 0.33
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (44 bp):
TCTGGGACATTGGTATCGATATATGACTTACATGTAAGACCATA
Found at i:47819753 original size:27 final size:28
Alignment explanation
Indices: 47819679--47819753 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
47819669 TTGGAAGAAG
47819679 TACTG-TATTAGTGGCTTTGCCACGTAAT
1 TACTGCTATTAGTGGCTTTGCCACGT-AT
*
47819707 TACTGCT-CTAGTGGCTTTGCCACGT-T
1 TACTGCTATTAGTGGCTTTGCCACGTAT
*
47819733 TACTGCTATTAGTAGCTTTGC
1 TACTGCTATTAGTGGCTTTGC
47819754 TGTGCTACTG
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 8 0.19
27 11 0.26
28 22 0.52
29 1 0.02
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.40
Consensus pattern (28 bp):
TACTGCTATTAGTGGCTTTGCCACGTAT
Found at i:47819938 original size:33 final size:33
Alignment explanation
Indices: 47819875--47819938 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
47819865 TGGGTTACAT
* *
47819875 GACTGCACTGTTACTGTATAGGGCTAAGGCCTA
1 GACTGCACTGATACTGTATAGGGCCAAGGCCTA
* *
47819908 GACTGTACTGATACTG-AGTAGGGCCCAGGCC
1 GACTGCACTGATACTGTA-TAGGGCCAAGGCC
47819939 CAGATTATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
32 1 0.04
33 25 0.96
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.23
Consensus pattern (33 bp):
GACTGCACTGATACTGTATAGGGCCAAGGCCTA
Found at i:47825934 original size:46 final size:47
Alignment explanation
Indices: 47825783--47825939 Score: 171
Period size: 46 Copynumber: 3.4 Consensus size: 47
47825773 TCGAATTTCT
* * *
47825783 TGAGTGCCAGTGTAAGACATGTCT-GGACATGCATCGACCAC-ATTA
1 TGAGTGCCAGTGTAAGACATGTTTGGGACATGCATCGACCTCGATGA
* * * * *
47825828 TGAGTGCCATTATAAGACCATGTTTGGTACATGGCATCGACGTAGA-GA
1 TGAGTGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGACCTCGATGA
*
47825876 TGAGTGCTAGTGTAAGACATGTTTGGGACATGCATCG-CCTCGATGA
1 TGAGTGCCAGTGTAAGACATGTTTGGGACATGCATCGACCTCGATGA
47825922 TGA-TAGCCAGTGTAAGAC
1 TGAGT-GCCAGTGTAAGAC
47825940 GTGACTGGGA
Statistics
Matches: 91, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
45 20 0.22
46 29 0.32
47 18 0.20
48 23 0.25
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (47 bp):
TGAGTGCCAGTGTAAGACATGTTTGGGACATGCATCGACCTCGATGA
Found at i:47826001 original size:44 final size:45
Alignment explanation
Indices: 47825791--47826046 Score: 157
Period size: 46 Copynumber: 5.5 Consensus size: 45
47825781 CTTGAGTGCC
* * *
47825791 AGTGTAAGACATGTCT-GGACATGCATCGACC-ACATTATGAGTGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCTAGATGATGA-TGCT
* * * * *
47825836 ATTATAAGACCATGTTTGGTACATGGCATCGACGTAGA-GATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG-CCTAGATGATGA-TGCT
* * *
47825884 AGTGTAAGACATGTTTGGGACATGCATCGCCTCGATGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCTAGATGATGAT-GCT
* * * * * *
47825930 AGTGTAAGACGTGACTGGGATACGCATCGGCTA-A-GAGTTATGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCTAGATGA-TGATGCT
* *
47825974 AGTGTAAGACATGTCTAGGACATGCATCAGCACGTATATACGA-GA-GCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GC-C-TAGAT--GATGATGCT
*
47826022 AGTATAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
47826047 GTAACGGTAA
Statistics
Matches: 164, Mismatches: 32, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
44 27 0.16
45 17 0.10
46 46 0.28
47 20 0.12
48 35 0.21
49 17 0.10
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTAGATGATGATGCT
Found at i:47826358 original size:11 final size:11
Alignment explanation
Indices: 47826342--47826376 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
47826332 TTATGCTTAC
47826342 TCTCTTTCCTT
1 TCTCTTTCCTT
47826353 TCTCTTTCCTT
1 TCTCTTTCCTT
*
47826364 TCTCTTTTCTT
1 TCTCTTTCCTT
47826375 TC
1 TC
47826377 AGTGCCGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (11 bp):
TCTCTTTCCTT
Found at i:47826949 original size:55 final size:55
Alignment explanation
Indices: 47826831--47826949 Score: 166
Period size: 55 Copynumber: 2.2 Consensus size: 55
47826821 TTTTAGTCTA
* *
47826831 TGTTGTACACGGGTAGGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAG
1 TGTTGTACACGGGTAGGCCACACGGGCGTGTGCCATGGCCATGTATTAAAGTCAG
* * * * * *
47826886 TATCGTACACGGGTAGGTCACACGGGCGTGTGCCATGGCTATGTATTGAAGTTAG
1 TGTTGTACACGGGTAGGCCACACGGGCGTGTGCCATGGCCATGTATTAAAGTCAG
47826941 TGTTGTACA
1 TGTTGTACA
47826950 TGGGCTAAGG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27
Consensus pattern (55 bp):
TGTTGTACACGGGTAGGCCACACGGGCGTGTGCCATGGCCATGTATTAAAGTCAG
Found at i:47834473 original size:100 final size:100
Alignment explanation
Indices: 47834335--47834515 Score: 299
Period size: 100 Copynumber: 1.8 Consensus size: 100
47834325 TCTAGTATGC
* * * * *
47834335 ATAGTAGCCTACACTTAGTACTACGCATGTGACTAATTATTCGGTAAATGTAGTAGCCTGCACTT
1 ATAGTAGCCTACACTTAGTACTACACATGCGACAAATTATCCGGTAAACGTAGTAGCCTGCACTT
47834400 AGTACTACACACGTGATCAAAGTTATCAGGTACGA
66 AGTACTACACACGTGATCAAAGTTATCAGGTACGA
* *
47834435 ATAGTAGCCTGCACTTAGTACTACACATGCGACAAATTATCCGGTACACGTAGTAGCCTGCACTT
1 ATAGTAGCCTACACTTAGTACTACACATGCGACAAATTATCCGGTAAACGTAGTAGCCTGCACTT
47834500 AGTACTACACACGTGA
66 AGTACTACACACGTGA
47834516 CCTCACAATA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 74 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (100 bp):
ATAGTAGCCTACACTTAGTACTACACATGCGACAAATTATCCGGTAAACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCAAAGTTATCAGGTACGA
Found at i:47834494 original size:49 final size:48
Alignment explanation
Indices: 47834336--47834516 Score: 227
Period size: 49 Copynumber: 3.7 Consensus size: 48
47834326 CTAGTATGCA
* * * * *
47834336 TAGTAGCCTACACTTAGTACTACGCATGTGACTAATTATTCGGTAAATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACAAATTATCCGGTACA-G
* * *
47834385 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGAA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CAAA-TTATCCGGTAC-AG
*
47834436 TAGTAGCCTGCACTTAGTACTACACATGCGACAAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACAAATTATCCGGTACA-G
*
47834485 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGAC
47834517 CTCACAATAG
Statistics
Matches: 114, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.01
49 68 0.60
50 7 0.06
51 37 0.32
52 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACAAATTATCCGGTACAG
Found at i:47836530 original size:47 final size:46
Alignment explanation
Indices: 47836460--47836730 Score: 228
Period size: 47 Copynumber: 5.8 Consensus size: 46
47836450 TCGGATTTCT
* * *
47836460 TGAGTGCTAGTGTAACACATGTCTGGGACATGCATCAGCCACATTA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGA
* ** *
47836506 TGAGTGCCAGTATAAGACCATGTCTGGGACATGCATTGGCCACATTA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACATGCATCAGCCACATGA
* * * * * *
47836553 TGAGTGCCAGTATAAGACCATGTCTGGGACATGGAATCGGCGTAGA-GG
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CACATGA
* * *
47836601 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCAACGGCCTCGATGA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGA
* * *
47836648 TGA-TAGCCAGTGTAAGACGTGTCTGGGACACGCATCAGCTA-A-GA
1 TGAGT-GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGA
* * * * *
47836692 -GTTGTGCTAGTGTAAGATATGACTTGGACATGCATCAGC
1 TG-AGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGC
47836731 ACGTATATAC
Statistics
Matches: 186, Mismatches: 31, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
43 1 0.01
44 30 0.16
45 2 0.01
46 22 0.12
47 107 0.58
48 22 0.12
49 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGA
Found at i:47844579 original size:27 final size:27
Alignment explanation
Indices: 47844535--47844592 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
47844525 AAAATCATAC
* * *
47844535 ATCACATAGGGGCGTAACAATTATTTT
1 ATCACATAGAGGCATAACAATCATTTT
*
47844562 ATCACATAGAGGCATAACAGTCATTTT
1 ATCACATAGAGGCATAACAATCATTTT
47844589 ATCA
1 ATCA
47844593 ATTAGGGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (27 bp):
ATCACATAGAGGCATAACAATCATTTT
Found at i:47861856 original size:27 final size:27
Alignment explanation
Indices: 47861802--47861933 Score: 149
Period size: 27 Copynumber: 4.9 Consensus size: 27
47861792 CAAATCAGTA
* * * *
47861802 ATTTTACCTTACAGGGGTATTACAGTC
1 ATTTTACCCTATAGGGGTATTTCGGTC
* *
47861829 ATTTTACCCTACAGGGGTATTTTGGTC
1 ATTTTACCCTATAGGGGTATTTCGGTC
* *
47861856 ATTTTACCCTATGGGGGTATATCGGTC
1 ATTTTACCCTATAGGGGTATTTCGGTC
* *
47861883 ATTTTATCCTATTA-GGGTTTTTCGGTC
1 ATTTTACCCTA-TAGGGGTATTTCGGTC
*
47861910 ATTTTACCCTATAGGGGCATTTCG
1 ATTTTACCCTATAGGGGTATTTCG
47861934 ATCCAACATT
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.02
27 85 0.97
28 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTATAGGGGTATTTCGGTC
Found at i:47863103 original size:17 final size:17
Alignment explanation
Indices: 47863081--47863113 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
47863071 AAACTAAAGC
47863081 TCTCCC-CAAAGCTGAAT
1 TCTCCCTCAAA-CTGAAT
47863098 TCTCCCTCAAACTGAA
1 TCTCCCTCAAACTGAA
47863114 ATCAGTGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.24
Consensus pattern (17 bp):
TCTCCCTCAAACTGAAT
Found at i:47863231 original size:24 final size:24
Alignment explanation
Indices: 47863179--47863231 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
47863169 CCCTTGATTT
*
47863179 CCTCCTAAAATCTCTCCTCATATC
1 CCTCCTAAAATCCCTCCTCATATC
* *
47863203 TCTCCTTAAATCCCTCCTACA-ATC
1 CCTCCTAAAATCCCTCCT-CATATC
47863227 CCTCC
1 CCTCC
47863232 AGGACATATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.23, C:0.45, G:0.00, T:0.32
Consensus pattern (24 bp):
CCTCCTAAAATCCCTCCTCATATC
Found at i:47863687 original size:27 final size:27
Alignment explanation
Indices: 47863673--47863853 Score: 213
Period size: 27 Copynumber: 6.7 Consensus size: 27
47863663 CTTACCATAA
*
47863673 AAGGGCAAAATAGTCATTTTA-CTACAT
1 AAGGGCAAAACAGTCATTTTACCT-CAT
** *
47863700 AAGAACAAAACAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *
47863727 AA-GGCAAAGCAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* **
47863753 AAGGGCAAAATAGTCATTTTACCAAAAT
1 AAGGGCAAAACAGTCATTTTACC-TCAT
*
47863781 AAGGGCAAAACAGACATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
*
47863808 AAGGGCAAAACAGTTATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *
47863835 AAGGGAAAAATAGTCATTT
1 AAGGGCAAAACAGTCATTT
47863854 ATCAATTTGG
Statistics
Matches: 130, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
26 23 0.18
27 82 0.63
28 25 0.19
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.27
Consensus pattern (27 bp):
AAGGGCAAAACAGTCATTTTACCTCAT
Found at i:47863808 original size:55 final size:55
Alignment explanation
Indices: 47863657--47863853 Score: 199
Period size: 55 Copynumber: 3.7 Consensus size: 55
47863647 GGGCGTTATA
* * * **
47863657 AGTCATCTTACCATAA-AAGGGCAAAATAGTCATTTTA-CTACATAAGAACAAAAC
1 AGTCATTTTACCATAATAAGGGCAAAACAGACATTTTACCT-CATAAGGGCAAAAC
* * * *
47863711 AATCATTTTACC-TCATAA-GGCAAAGCA-ATCATTTTACCTCATAAGGGCAAAAT
1 AGTCATTTTACCATAATAAGGGCAAAACAGA-CATTTTACCTCATAAGGGCAAAAC
*
47863764 AGTCATTTTACCAAAATAAGGGCAAAACAGACATTTTACCTCATAAGGGCAAAAC
1 AGTCATTTTACCATAATAAGGGCAAAACAGACATTTTACCTCATAAGGGCAAAAC
* * * * *
47863819 AGTTATTTTACC-TCATAAGGGAAAAATAGTCATTT
1 AGTCATTTTACCATAATAAGGGCAAAACAGACATTT
47863854 ATCAATTTGG
Statistics
Matches: 117, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
53 38 0.32
54 36 0.31
55 42 0.36
56 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (55 bp):
AGTCATTTTACCATAATAAGGGCAAAACAGACATTTTACCTCATAAGGGCAAAAC
Found at i:47867613 original size:27 final size:27
Alignment explanation
Indices: 47867578--47867738 Score: 164
Period size: 27 Copynumber: 6.0 Consensus size: 27
47867568 GGTAAAATAG
* *
47867578 TCATCTTACCATAAAAGGGAAAAACAA
1 TCATTTTACCATATAAGGGAAAAACAA
* *
47867605 CCATTTTACCATATAAGGGAAAAACAG
1 TCATTTTACCATATAAGGGAAAAACAA
* *
47867632 TCATTTTACCATATAAGGGCAAAATAGA
1 TCATTTTACCATATAAGGGAAAAACA-A
** * * *
47867660 -CATTTTACTTTATAAGGGAAACATAG
1 TCATTTTACCATATAAGGGAAAAACAA
* *
47867686 TCATTTTACCACATAAGGGCAAAACAA
1 TCATTTTACCATATAAGGGAAAAACAA
*
47867713 TCATTTTACC-TCATAAGGGCAAAACA
1 TCATTTTACCAT-ATAAGGGAAAAACA
47867739 GTCAATTATC
Statistics
Matches: 110, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.25
Consensus pattern (27 bp):
TCATTTTACCATATAAGGGAAAAACAA
Found at i:47867641 original size:54 final size:52
Alignment explanation
Indices: 47867571--47867742 Score: 200
Period size: 54 Copynumber: 3.2 Consensus size: 52
47867561 ACATAGGGGT
* * * *
47867571 AAAATAGTCATCTTACCATAAAAGGGAAAAACAACCATTTTACCATATAAGGGA
1 AAAACAGTCATTTTACCATATAAGGGCAAAACAA-CATTTTACC-TATAAGGGA
* *
47867625 AAAACAGTCATTTTACCATATAAGGGCAAAATAGACATTTTACTTTATAAGGGA
1 AAAACAGTCATTTTACCATATAAGGGCAAAACA-ACATTTTAC-CTATAAGGGA
* * * *
47867679 AACATAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCATATAAGGGCAAAACAA-CATTTTACCT-ATAAGGGA
47867733 AAAACAGTCA
1 AAAACAGTCA
47867743 ATTATCATTT
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
53 2 0.02
54 97 0.97
55 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.25
Consensus pattern (52 bp):
AAAACAGTCATTTTACCATATAAGGGCAAAACAACATTTTACCTATAAGGGA
Found at i:47871032 original size:24 final size:24
Alignment explanation
Indices: 47870942--47871037 Score: 93
Period size: 24 Copynumber: 4.0 Consensus size: 24
47870932 ATAACACACC
* *
47870942 ACATTGTGGCCAAGCCACCCCATA
1 ACATTGTGGCCAAGCCACTCAATA
* * * *
47870966 GCATTGTGGCTAAGCAACTCAGTA
1 ACATTGTGGCCAAGCCACTCAATA
* * * * *
47870990 GCGTTTTGGTCAAGCCACTCAAAA
1 ACATTGTGGCCAAGCCACTCAATA
47871014 ACATTGTGGCCAAGCCACTCAATA
1 ACATTGTGGCCAAGCCACTCAATA
47871038 TTACAGATAA
Statistics
Matches: 54, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (24 bp):
ACATTGTGGCCAAGCCACTCAATA
Found at i:47871499 original size:26 final size:26
Alignment explanation
Indices: 47871470--47871522 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
47871460 TACATAGTGT
*
47871470 ACTT-ATATTATTTCACATTATGAATA
1 ACTTGATAGTATTTC-CATTATGAATA
* *
47871496 ACTTGATAGTGTTTCCATTATTAATA
1 ACTTGATAGTATTTCCATTATGAATA
47871522 A
1 A
47871523 ATGTAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (26 bp):
ACTTGATAGTATTTCCATTATGAATA
Found at i:47874925 original size:55 final size:54
Alignment explanation
Indices: 47874838--47875091 Score: 251
Period size: 55 Copynumber: 4.8 Consensus size: 54
47874828 ATTAGGGTTT
*
47874838 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGA
* * * * *
47874893 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGG-A
* * * * *
47874949 AAGG-TCCCATGTAAGACCATGCCAAGGCATGAC-ATT-GTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGA
* *
47875000 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC--A--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGA
* *
47875049 AAGGATACCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
47875092 GTACCCGCAT
Statistics
Matches: 165, Mismatches: 26, Indels: 22
0.77 0.12 0.10
Matches are distributed among these distances:
49 40 0.24
51 6 0.04
52 30 0.18
53 9 0.05
54 13 0.08
55 62 0.38
56 5 0.03
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGA
Found at i:47875034 original size:107 final size:110
Alignment explanation
Indices: 47874845--47875044 Score: 291
Period size: 107 Copynumber: 1.8 Consensus size: 110
47874835 TTTAAGGATA
* *
47874845 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGAAAGGAAACCATGTAAGA
*
47874910 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
47874955 CCATGTAAGACCATGCCAAGGCATGAC-ATT-GTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGAAAGGAAACCATGTAAG
* *
47875016 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
47875045 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
106 3 0.04
107 46 0.57
108 3 0.04
109 3 0.04
110 26 0.32
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGAAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:47875303 original size:16 final size:16
Alignment explanation
Indices: 47875282--47875312 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47875272 ATAAATTTGA
47875282 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
47875298 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
47875313 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:47879084 original size:14 final size:14
Alignment explanation
Indices: 47879065--47879091 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
47879055 TTGTTTAAAG
47879065 AGGGTGATTAAAAT
1 AGGGTGATTAAAAT
47879079 AGGGTGATTAAAA
1 AGGGTGATTAAAA
47879092 ACTAAGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (14 bp):
AGGGTGATTAAAAT
Found at i:47880695 original size:22 final size:22
Alignment explanation
Indices: 47880642--47880686 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
47880632 GAAAATAATC
**
47880642 AAAATTAATCAAAATTTATTAT
1 AAAATTAATTGAAATTTATTAT
47880664 AAAATTAATTGAAATTTATTAT
1 AAAATTAATTGAAATTTATTAT
47880686 A
1 A
47880687 TTAATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
AAAATTAATTGAAATTTATTAT
Found at i:47884354 original size:30 final size:30
Alignment explanation
Indices: 47884296--47884354 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
47884286 GCCTTTTGAA
* * *
47884296 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGACAACCAATTTTT
47884326 AATATTTACAAAAAGA-ACAACCACATTTT
1 AATATTTACAAAAAGAGACAACCA-ATTTT
47884355 GAAAATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACCAATTTTT
Found at i:47886148 original size:44 final size:44
Alignment explanation
Indices: 47886098--47886185 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
47886088 TCGACTTAGC
47886098 GTCTTTCTTGGCAAGTAAATACTTAATCGTCGAGCGGTCTGTAT
1 GTCTTTCTTGGCAAGTAAATACTTAATCGTCGAGCGGTCTGTAT
47886142 GTCTTTCTTGGCAAGTAAATACTTAATCGTCGAGCGGTCTGTAT
1 GTCTTTCTTGGCAAGTAAATACTTAATCGTCGAGCGGTCTGTAT
47886186 AAACAGTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (44 bp):
GTCTTTCTTGGCAAGTAAATACTTAATCGTCGAGCGGTCTGTAT
Found at i:47890799 original size:34 final size:34
Alignment explanation
Indices: 47890760--47890829 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
47890750 TAACTTTTTG
47890760 ACCTTTATACTTTAAACTATCAAATTTTCTATTT
1 ACCTTTATACTTTAAACTATCAAATTTTCTATTT
47890794 ACCTTTATACTTTAAACTATCAAATTTTCTATTT
1 ACCTTTATACTTTAAACTATCAAATTTTCTATTT
47890828 AC
1 AC
47890830 GCGATTAAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (34 bp):
ACCTTTATACTTTAAACTATCAAATTTTCTATTT
Found at i:47892778 original size:102 final size:102
Alignment explanation
Indices: 47892602--47892806 Score: 376
Period size: 102 Copynumber: 2.0 Consensus size: 102
47892592 CTTTCCTAGG
*
47892602 TGGTAATCAATCACAAGCTCGTAGTCTTTTAGTAATTCTAACCATCCACTTTGTCTCAAATTCAG
1 TGGTAATCAATCACAAGCTCGTAGTCTTTTAGTAATTCTAACCATCCACATTGTCTCAAATTCAG
47892667 ATCTTTTTGAGTCATCAAGTATTTCAGGCTTTTGTGA
66 ATCTTTTTGAGTCATCAAGTATTTCAGGCTTTTGTGA
*
47892704 TGGTAATCAATCACAAGCTCGTAGTCTTTTAGTAATTCTAACCATCGACATTGTCTCAAATTCTA
1 TGGTAATCAATCACAAGCTCGTAGTCTTTTAGTAATTCTAACCATCCACATTGTCTCAAATTC-A
47892769 -ATCTTTTTGAGTCATCAAGTATTTCAGGCTTTTGTGA
65 GATCTTTTTGAGTCATCAAGTATTTCAGGCTTTTGTGA
47892806 T
1 T
47892807 CAGAATAGAC
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
102 99 0.99
103 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.40
Consensus pattern (102 bp):
TGGTAATCAATCACAAGCTCGTAGTCTTTTAGTAATTCTAACCATCCACATTGTCTCAAATTCAG
ATCTTTTTGAGTCATCAAGTATTTCAGGCTTTTGTGA
Found at i:47896404 original size:33 final size:33
Alignment explanation
Indices: 47896361--47896427 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
47896351 TAAAGTGAAA
*
47896361 TTATGTGCATATATATATAGTCATATAAAAGTT
1 TTATGCGCATATATATATAGTCATATAAAAGTT
47896394 TTATGCGCATATATATATAGTCATATAAAAGTT
1 TTATGCGCATATATATATAGTCATATAAAAGTT
47896427 T
1 T
47896428 ATCAACGTGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (33 bp):
TTATGCGCATATATATATAGTCATATAAAAGTT
Found at i:47900350 original size:42 final size:43
Alignment explanation
Indices: 47900240--47900358 Score: 111
Period size: 42 Copynumber: 2.8 Consensus size: 43
47900230 CTCGTACAAT
* * * ** *
47900240 GCCAATGTCCCA-AAGTGGTCTTACATGTGATCAAATATCGAT
1 GCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCGAC
* *
47900282 GCC-ACTGTCCTAGACAG-GATCTTACACGAAATCAAATA-CGAC
1 GCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCGAC
47900324 GCCAACGTCCCAGACGTGGTCTTACACGTAAATCA
1 GCCAACGTCCCAGACGTGGTCTTACACG-AAATCA
47900359 TAAGTCGATG
Statistics
Matches: 61, Mismatches: 10, Indels: 11
0.74 0.12 0.13
Matches are distributed among these distances:
41 2 0.03
42 32 0.52
43 26 0.43
44 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
GCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCGAC
Found at i:47905031 original size:22 final size:21
Alignment explanation
Indices: 47905006--47905048 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
47904996 CAAATCTATC
47905006 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTT-TTAT
*
47905028 AAAATTAATTAAAATTTTTAT
1 AAAATTAATCAAAATTTTTAT
47905049 GTTAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AAAATTAATCAAAATTTTTAT
Found at i:47907416 original size:34 final size:34
Alignment explanation
Indices: 47907337--47907400 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
47907327 GTGTGTGCAT
*
47907337 ACTG-TACTAAAATGGGCTAAGGCCCAGACTACC
1 ACTGATACTGAAATGGGCTAAGGCCCAGACTACC
*
47907370 ACTGATACTGAAATGGGCTCAGGCCCAGACT
1 ACTGATACTGAAATGGGCTAAGGCCCAGACT
47907401 GTTACTGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.31, C:0.27, G:0.23, T:0.19
Consensus pattern (34 bp):
ACTGATACTGAAATGGGCTAAGGCCCAGACTACC
Found at i:47908452 original size:12 final size:12
Alignment explanation
Indices: 47908431--47908460 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
47908421 CAGAGGTACT
47908431 CGTGGAAGAGGC
1 CGTGGAAGAGGC
*
47908443 CGTGGCAGAGGC
1 CGTGGAAGAGGC
47908455 CGTGGA
1 CGTGGA
47908461 GGTGCTCGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.50, T:0.10
Consensus pattern (12 bp):
CGTGGAAGAGGC
Found at i:47916907 original size:20 final size:21
Alignment explanation
Indices: 47916858--47916918 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
47916848 GTTAATTTTA
*
47916858 AGGACAAATTAAATTCAGCAGCT
1 AGGACAAATTTAATTC-G-AGCT
47916881 AGGACAAATTTAATTCG-GCT
1 AGGACAAATTTAATTCGAGCT
*
47916901 GGGACAAATTTAATTCGA
1 AGGACAAATTTAATTCGA
47916919 CATATAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 19 0.54
22 1 0.03
23 15 0.43
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (21 bp):
AGGACAAATTTAATTCGAGCT
Found at i:47922831 original size:40 final size:40
Alignment explanation
Indices: 47922747--47922971 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
47922737 TTGAATGCTG
* * * *
47922747 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
47922787 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
47922827 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
47922867 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAA
*
47922907 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
47922946 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
47922972 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 33 0.21
40 116 0.74
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47922989 original size:79 final size:80
Alignment explanation
Indices: 47922827--47923004 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
47922817 AGTTATTAAT
* ** *
47922827 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ***
47922892 GTGCGAGTTTTAAAA
66 GAACGAGAGCTAAAA
* * * *
47922907 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
47922971 GAACGAGGAGCT-ATA
66 GAACGA-GAGCTAAAA
*
47922986 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
47923005 TACGTGATTT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 15 0.18
79 45 0.55
80 22 0.27
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGAGCTAAAA
Found at i:47930797 original size:40 final size:40
Alignment explanation
Indices: 47930713--47930937 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
47930703 TTGAATGCTG
* * * *
47930713 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
47930753 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
47930793 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
47930833 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAA
*
47930873 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
47930912 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
47930938 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 33 0.21
40 116 0.74
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47930956 original size:79 final size:80
Alignment explanation
Indices: 47930793--47930949 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 80
47930783 AGTTATTAAT
* ** *
47930793 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ***
47930858 GTGCGAGTTTTAAAA
66 GAACGAGAGCTAAAA
* * * *
47930873 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
47930937 GAACGAGGAGCTA
66 GAACGA-GAGCTA
47930950 TATCCGGTTA
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
79 40 0.63
80 23 0.37
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGAGCTAAAA
Found at i:47934437 original size:24 final size:27
Alignment explanation
Indices: 47934403--47934457 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 27
47934393 TGATCACTTG
47934403 TTTTCCTTTCT-TTTTCTCACT-TT-TC
1 TTTTCCTTTCTCTTTT-TCACTCTTCTC
47934428 TTTT-CTTTCTCTTTTTCACTCTTCTC
1 TTTTCCTTTCTCTTTTTCACTCTTCTC
47934454 TTTT
1 TTTT
47934458 TACTCACTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.41
25 10 0.37
26 6 0.22
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (27 bp):
TTTTCCTTTCTCTTTTTCACTCTTCTC
Found at i:47934454 original size:15 final size:14
Alignment explanation
Indices: 47934434--47934472 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
47934424 TTTCTTTTCT
47934434 TTCTCTTTTTCACTC
1 TTCTCTTTTT-ACTC
47934449 TTCTCTTTTTACTC
1 TTCTCTTTTTACTC
*
47934463 -ACTCTTTTTA
1 TTCTCTTTTTA
47934473 AAATTTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.39
14 4 0.17
15 10 0.43
ACGTcount: A:0.10, C:0.28, G:0.00, T:0.62
Consensus pattern (14 bp):
TTCTCTTTTTACTC
Found at i:47953627 original size:13 final size:12
Alignment explanation
Indices: 47953606--47953641 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
47953596 AGACCGTATG
47953606 CAATTTTTTTTT
1 CAATTTTTTTTT
47953618 CAATTTTTTTTT
1 CAATTTTTTTTT
*
47953630 CGATTTTTTTTT
1 CAATTTTTTTTT
47953642 GAATCTACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.75
Consensus pattern (12 bp):
CAATTTTTTTTT
Found at i:47959567 original size:40 final size:40
Alignment explanation
Indices: 47959409--47959558 Score: 255
Period size: 40 Copynumber: 3.8 Consensus size: 40
47959399 GGTCATATCA
* *
47959409 CCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* *
47959449 CTGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
47959489 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
*
47959529 CCGGATATAGTCACTAGCACAAATGCCTTC
1 CCGGATATAGTAACTAGCACAAATGCCTTC
47959559 AGATCTTAGT
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:47960968 original size:13 final size:13
Alignment explanation
Indices: 47960952--47960992 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
47960942 TTTATTATTT
47960952 TTAACACAAAATA
1 TTAACACAAAATA
47960965 TTAACACAAAATA
1 TTAACACAAAATA
*
47960978 TGAACACAAAATA
1 TTAACACAAAATA
47960991 TT
1 TT
47960993 TATAATATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.59, C:0.15, G:0.02, T:0.24
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:47965412 original size:15 final size:15
Alignment explanation
Indices: 47965392--47965446 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
47965382 ACTCTCCTCA
*
47965392 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
47965407 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
47965422 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
47965436 TTCTTTT-TCTC
1 TTCTTTTCTCTC
47965447 GATCAATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 16 0.46
15 19 0.54
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:47972149 original size:30 final size:30
Alignment explanation
Indices: 47972115--47972223 Score: 80
Period size: 30 Copynumber: 3.6 Consensus size: 30
47972105 TAAGCTAAAC
* *
47972115 CGAGCTCACCCCTAGCTCA-TATTCAGCTCA
1 CGAGCTAAACCCTAGCTCAGT-TTCAGCTCA
* *
47972145 CGAGCTAAACCTTAGCTCAGTTTCAGCTTA
1 CGAGCTAAACCCTAGCTCAGTTTCAGCTCA
* * * * *
47972175 GGAGTTTAA-TCTCAGCTCAACTTT-AGCTCA
1 CGAGCTAAACCCT-AGCTC-AGTTTCAGCTCA
*
47972205 CGAGCTAAAGCCTAGCTCA
1 CGAGCTAAACCCTAGCTCA
47972224 TTTTAGTTTA
Statistics
Matches: 60, Mismatches: 15, Indels: 9
0.71 0.18 0.11
Matches are distributed among these distances:
29 2 0.03
30 51 0.85
31 7 0.12
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (30 bp):
CGAGCTAAACCCTAGCTCAGTTTCAGCTCA
Found at i:47978360 original size:26 final size:29
Alignment explanation
Indices: 47978305--47978381 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
47978295 AATGAAAATG
47978305 ATAATAATAATAATAATATAACATAGAAA
1 ATAATAATAATAATAATATAACATAGAAA
* *
47978334 ATAATGATAATAAT-ATATGA-ATA-AAA
1 ATAATAATAATAATAATATAACATAGAAA
*
47978360 A-AATATATACATAAAAATATAA
1 ATAATA-ATA-ATAATAATATAA
47978382 TAAAAATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
25 3 0.08
26 7 0.17
27 7 0.17
28 10 0.25
29 13 0.32
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.29
Consensus pattern (29 bp):
ATAATAATAATAATAATATAACATAGAAA
Found at i:47978365 original size:14 final size:13
Alignment explanation
Indices: 47978348--47978395 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
47978338 TGATAATAAT
47978348 ATATGAATAAAAAA
1 ATAT-AATAAAAAA
47978362 ATAT-ATACATAAAA
1 ATATAATA-A-AAAA
*
47978376 ATATAATAAAAAT
1 ATATAATAAAAAA
47978389 ATATAAT
1 ATATAAT
47978396 TTAATATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 3 0.10
13 11 0.37
14 13 0.43
15 3 0.10
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (13 bp):
ATATAATAAAAAA
Found at i:47978515 original size:16 final size:16
Alignment explanation
Indices: 47978491--47978534 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
47978481 AATACTACTT
*
47978491 CATAAATATATACATA
1 CATATATATATACATA
*
47978507 CATATATATATACTTA
1 CATATATATATACATA
* *
47978523 TATGTATATATA
1 CATATATATATA
47978535 TTTATATGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (16 bp):
CATATATATATACATA
Found at i:47978539 original size:16 final size:16
Alignment explanation
Indices: 47978496--47978544 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
47978486 TACTTCATAA
* * *
47978496 ATATATACATACATAT
1 ATATATACTTATATGT
47978512 ATATATACTTATATGT
1 ATATATACTTATATGT
*
47978528 ATATATATTTATATGT
1 ATATATACTTATATGT
47978544 A
1 A
47978545 AAGTTATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (16 bp):
ATATATACTTATATGT
Found at i:47978768 original size:24 final size:24
Alignment explanation
Indices: 47978701--47978757 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
47978691 TAGTAATTAT
* * * *
47978701 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
47978725 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
47978749 AATAATAAT
1 AATAATAAT
47978758 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:47985937 original size:30 final size:30
Alignment explanation
Indices: 47985903--47985999 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
47985893 TAAACTAAAA
*
47985903 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
47985933 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
47985963 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
47985992 ATGAGCTA
1 -TGAGCTA
47986000 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:47989780 original size:30 final size:30
Alignment explanation
Indices: 47989746--47989843 Score: 94
Period size: 30 Copynumber: 3.3 Consensus size: 30
47989736 TAAACTAAAA
47989746 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
47989776 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
*
47989806 TGAGCTAAG-TTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
47989835 TGAGCTAAG
1 TGAGCTAAG
47989844 AGTGAGCTCG
Statistics
Matches: 52, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
29 20 0.38
30 29 0.56
31 3 0.06
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:47990282 original size:27 final size:26
Alignment explanation
Indices: 47990239--47990308 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 26
47990229 TTTAATTTTT
47990239 ACAAC-TTAAATGA-GTCTAAATT-AGG
1 ACAACTTTAAAT-ATGTCTAAATTGA-G
* **
47990264 ACATCCTTTAAATATGTCTAGCTTGAG
1 ACA-ACTTTAAATATGTCTAAATTGAG
47990291 ACAACTTTAAATATGTCT
1 ACAACTTTAAATATGTCT
47990309 TGTTTAGGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
25 3 0.08
26 16 0.43
27 17 0.46
28 1 0.03
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (26 bp):
ACAACTTTAAATATGTCTAAATTGAG
Found at i:47990319 original size:26 final size:26
Alignment explanation
Indices: 47990259--47990320 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
47990249 TGAGTCTAAA
*
47990259 TTAGGACATCCTTTAAATATGTCTAGC
1 TTAGGACA-ACTTTAAATATGTCTAGC
* *
47990286 TT-GAGACAACTTTAAATATGTCTTGT
1 TTAG-GACAACTTTAAATATGTCTAGC
47990312 TTAGGACAA
1 TTAGGACAA
47990321 ATTAAATTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 23 0.77
27 7 0.23
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (26 bp):
TTAGGACAACTTTAAATATGTCTAGC
Found at i:47991303 original size:20 final size:20
Alignment explanation
Indices: 47991257--47991303 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
47991247 AGCTCGTTTC
47991257 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCGAGCTCAAGT
* *
47991277 CAACTCACTCGAGCTCAATT
1 CAGCTCACTCGAGCTCAAGT
47991297 CAGCTCA
1 CAGCTCA
47991304 ATCTTAACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.36, G:0.15, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCGAGCTCAAGT
Found at i:47992898 original size:28 final size:29
Alignment explanation
Indices: 47992832--47992903 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
47992822 AAAAAAATCG
47992832 AAAAAAAG-GAAAAAAAAGAAGTGACAAAA
1 AAAAAAAGTGAAAAAAAAGAAG-GACAAAA
* *
47992861 AAAATCAAGTTAAAAAAAAGAA-GA-AAGAA
1 AAAA-AAAGTGAAAAAAAAGAAGGACAA-AA
47992890 AAAAAAAGTGAAAA
1 AAAAAAAGTGAAAA
47992904 GTCTTGCGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
28 10 0.28
29 12 0.33
30 3 0.08
31 11 0.31
ACGTcount: A:0.75, C:0.03, G:0.15, T:0.07
Consensus pattern (29 bp):
AAAAAAAGTGAAAAAAAAGAAGGACAAAA
Found at i:47994003 original size:48 final size:47
Alignment explanation
Indices: 47993924--47994029 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
47993914 GAGTGTCATG
*
47993924 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
47993972 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
47994020 GAAAAAGAAA
1 GAAAAAGAAA
47994030 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:47995745 original size:20 final size:20
Alignment explanation
Indices: 47995699--47995745 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
47995689 AGCTCGTTTC
47995699 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCGAGCTCAAGT
* *
47995719 CAACTCACTCGAGCTCAATT
1 CAGCTCACTCGAGCTCAAGT
47995739 CAGCTCA
1 CAGCTCA
47995746 ATCTTAACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.36, G:0.15, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCGAGCTCAAGT
Found at i:48001746 original size:22 final size:23
Alignment explanation
Indices: 48001719--48001771 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
48001709 TCAAAACTCT
48001719 TTTTCTTTTCTCTTTCATTTTC-
1 TTTTCTTTTCTCTTTCATTTTCA
* *
48001741 TTTTC-TTTCTTTTTTATTTTCA
1 TTTTCTTTTCTCTTTCATTTTCA
*
48001763 CTTTCTTTT
1 TTTTCTTTT
48001772 TCCACTCTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 14 0.54
22 9 0.35
23 3 0.12
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTCTTTTCTCTTTCATTTTCA
Found at i:48002176 original size:39 final size:39
Alignment explanation
Indices: 48002122--48002199 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
48002112 CTAGGAGGGT
48002122 TGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGG
1 TGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGG
48002161 TGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGG
1 TGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGG
48002200 CCCAATAAGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.18
Consensus pattern (39 bp):
TGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGG
Found at i:48004076 original size:10 final size:10
Alignment explanation
Indices: 48004063--48004100 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
48004053 AAGAAGCTAA
48004063 ATTGAGCTCG
1 ATTGAGCTCG
48004073 ATTGAGCT-G
1 ATTGAGCTCG
48004082 ACTTGAGCTCG
1 A-TTGAGCTCG
*
48004093 AGTGAGCT
1 ATTGAGCT
48004101 GGAAACGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (10 bp):
ATTGAGCTCG
Found at i:48004087 original size:20 final size:20
Alignment explanation
Indices: 48004064--48004101 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
48004054 AGAAGCTAAA
*
48004064 TTGAGCTCGATTGAGCTGAC
1 TTGAGCTCGAGTGAGCTGAC
48004084 TTGAGCTCGAGTGAGCTG
1 TTGAGCTCGAGTGAGCTG
48004102 GAAACGAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (20 bp):
TTGAGCTCGAGTGAGCTGAC
Found at i:48006800 original size:16 final size:16
Alignment explanation
Indices: 48006765--48006805 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
48006755 TTTAACTTGA
48006765 TTTTTTTTTGCTCACCT
1 TTTTTTTTTGCTCA-CT
48006782 TTTTTTTTTGCTCGA-T
1 TTTTTTTTTGCTC-ACT
48006798 TTTTTTTT
1 TTTTTTTT
48006806 CACTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 9 0.39
17 13 0.57
18 1 0.04
ACGTcount: A:0.05, C:0.15, G:0.07, T:0.73
Consensus pattern (16 bp):
TTTTTTTTTGCTCACT
Found at i:48006860 original size:14 final size:13
Alignment explanation
Indices: 48006797--48006860 Score: 65
Period size: 13 Copynumber: 4.5 Consensus size: 13
48006787 TTTTGCTCGA
*
48006797 TTTTTTTTTCACT
1 TTTTTTTTTCAAT
*
48006810 TTTTTTTTTGAAT
1 TTTTTTTTTCAAT
48006823 TTTTTTTTTCAAT
1 TTTTTTTTTCAAT
48006836 CAATTTATTTTTTCGAAT
1 ---TTT-TTTTTTC-AAT
48006854 TTTTTTT
1 TTTTTTT
48006861 GATTTTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
13 23 0.53
14 4 0.09
15 3 0.07
16 3 0.07
17 7 0.16
18 3 0.07
ACGTcount: A:0.16, C:0.08, G:0.03, T:0.73
Consensus pattern (13 bp):
TTTTTTTTTCAAT
Found at i:48008626 original size:10 final size:10
Alignment explanation
Indices: 48008613--48008650 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
48008603 AAGAAGCTAA
48008613 ATTGAGCTCG
1 ATTGAGCTCG
48008623 ATTGAGCT-G
1 ATTGAGCTCG
48008632 ACTTGAGCTCG
1 A-TTGAGCTCG
*
48008643 AGTGAGCT
1 ATTGAGCT
48008651 GGAAACGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (10 bp):
ATTGAGCTCG
Found at i:48008637 original size:20 final size:20
Alignment explanation
Indices: 48008614--48008651 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
48008604 AGAAGCTAAA
*
48008614 TTGAGCTCGATTGAGCTGAC
1 TTGAGCTCGAGTGAGCTGAC
48008634 TTGAGCTCGAGTGAGCTG
1 TTGAGCTCGAGTGAGCTG
48008652 GAAACGAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (20 bp):
TTGAGCTCGAGTGAGCTGAC
Found at i:48013338 original size:12 final size:12
Alignment explanation
Indices: 48013321--48013389 Score: 61
Period size: 12 Copynumber: 5.6 Consensus size: 12
48013311 TTGGAGTAAC
48013321 AAAAAAAA-TC-
1 AAAAAAAATTCA
48013331 AAAAAAAATTCGA
1 AAAAAAAATTC-A
*
48013344 AAAAAAATTGATTGA
1 AAAAAAA---ATTCA
48013359 AAAAAAAATTCA
1 AAAAAAAATTCA
* *
48013371 AAAAAAAAGTGA
1 AAAAAAAATTCA
48013383 AAAAAAA
1 AAAAAAA
48013390 TCGAGCAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
10 8 0.16
11 2 0.04
12 21 0.43
13 7 0.14
15 8 0.16
16 3 0.06
ACGTcount: A:0.74, C:0.04, G:0.07, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:48013389 original size:28 final size:28
Alignment explanation
Indices: 48013331--48013389 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
48013321 AAAAAAAATC
* * ***
48013331 AAAAAAAATTCGAAAAAAAATTGATTGA
1 AAAAAAAATTCAAAAAAAAAGTGAAAAA
48013359 AAAAAAAATTCAAAAAAAAAGTGAAAAA
1 AAAAAAAATTCAAAAAAAAAGTGAAAAA
48013387 AAA
1 AAA
48013390 TCGAGCAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.15
Consensus pattern (28 bp):
AAAAAAAATTCAAAAAAAAAGTGAAAAA
Found at i:48013415 original size:29 final size:27
Alignment explanation
Indices: 48013369--48013440 Score: 85
Period size: 29 Copynumber: 2.7 Consensus size: 27
48013359 AAAAAAAATT
*
48013369 CAAAAAAAAA-GTGAAAAAAAATCGAG
1 CAAAAAAAAAGGTGAAAAAAAATCAAG
48013395 CAAAAAAAAAGGTGACCAAAAAAATCAAG
1 CAAAAAAAAAGGTGA--AAAAAAATCAAG
**
48013424 TTAAAAAAAA-GTGAAAA
1 CAAAAAAAAAGGTGAAAA
48013441 GTCTTGCGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
26 13 0.32
27 4 0.10
28 4 0.10
29 19 0.47
ACGTcount: A:0.68, C:0.08, G:0.14, T:0.10
Consensus pattern (27 bp):
CAAAAAAAAAGGTGAAAAAAAATCAAG
Found at i:48014333 original size:18 final size:18
Alignment explanation
Indices: 48014312--48014346 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
48014302 AGAAAAGAAA
48014312 ATTGA-AAAAGAAATTGAG
1 ATTGAGAAAA-AAATTGAG
48014330 ATTGAGAAAAAAATTGA
1 ATTGAGAAAAAAATTGA
48014347 AAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
ATTGAGAAAAAAATTGAG
Found at i:48019052 original size:22 final size:22
Alignment explanation
Indices: 48019022--48019065 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
48019012 TTTGGTATTT
48019022 GGGAATTGGTACGAAACGGTAA
1 GGGAATTGGTACGAAACGGTAA
* *
48019044 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAACGGTAA
48019066 TGGTTCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.07, G:0.36, T:0.23
Consensus pattern (22 bp):
GGGAATTGGTACGAAACGGTAA
Found at i:48021458 original size:12 final size:13
Alignment explanation
Indices: 48021434--48021459 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48021424 AAAAGAGAAG
48021434 AAATTCAAAAAAA
1 AAATTCAAAAAAA
48021447 AAATTCAAAAAAA
1 AAATTCAAAAAAA
48021460 TCGAAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (13 bp):
AAATTCAAAAAAA
Found at i:48032294 original size:30 final size:31
Alignment explanation
Indices: 48032260--48032354 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 31
48032250 CTCACTCCTC
*
48032260 GCTC-ACTTTCAACTTACGAGCTAAACCTTA
1 GCTCAACTTTCAGCTTACGAGCTAAACCTTA
* * * * *
48032290 GCTCAAC-TTCAGCTTAGGAGTTTAGCCTCA
1 GCTCAACTTTCAGCTTACGAGCTAAACCTTA
* *
48032320 GCTCAACTTT-AGCTCACGAGCTAAAGCTTA
1 GCTCAACTTTCAGCTTACGAGCTAAACCTTA
48032350 GCTCA
1 GCTCA
48032355 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
30 46 0.92
31 4 0.08
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (31 bp):
GCTCAACTTTCAGCTTACGAGCTAAACCTTA
Found at i:48038560 original size:30 final size:30
Alignment explanation
Indices: 48038480--48038571 Score: 96
Period size: 30 Copynumber: 3.1 Consensus size: 30
48038470 ACTAAAATGG
* *
48038480 TAAGCTTTAGCTCGTGAGCTAAAGTTGAGC
1 TAAGGTTTAGCTCGTGAGCTGAAGTTGAGC
* * * * * *
48038510 TGAGGCTAAACTCCTAAGCTGAAGTTGAGC
1 TAAGGTTTAGCTCGTGAGCTGAAGTTGAGC
48038540 TAAGGTTTAGCTCGTGAGCTGAA-TATGAGC
1 TAAGGTTTAGCTCGTGAGCTGAAGT-TGAGC
48038570 TA
1 TA
48038572 GGAGTGAGCT
Statistics
Matches: 47, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 46 0.98
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
TAAGGTTTAGCTCGTGAGCTGAAGTTGAGC
Found at i:48040745 original size:30 final size:30
Alignment explanation
Indices: 48040679--48040747 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
48040669 TTTGTTTCAA
*
48040679 TTTCTTTTTCACTCTCAAATTTCTTTTCGT
1 TTTCTTTTTCAATCTCAAATTTCTTTTCGT
* * *
48040709 TCTCTTTTTCAATCTC-ATTTTCTTTTTCTT
1 TTTCTTTTTCAATCTCAAATTTC-TTTTCGT
48040739 TTTCTTTTT
1 TTTCTTTTT
48040748 TCTTTTCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 5 0.15
30 28 0.85
ACGTcount: A:0.10, C:0.22, G:0.01, T:0.67
Consensus pattern (30 bp):
TTTCTTTTTCAATCTCAAATTTCTTTTCGT
Found at i:48040826 original size:5 final size:5
Alignment explanation
Indices: 48040816--48040886 Score: 65
Period size: 5 Copynumber: 13.6 Consensus size: 5
48040806 CTCTTGCCTC
*
48040816 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTT TGCTTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-CTTT T-C-TTT
*
48040864 TCTTT TCTTT TCTTT TTTTT TCT
1 TCTTT TCTTT TCTTT TCTTT TCT
48040887 CTTTACAAGA
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
4 4 0.07
5 35 0.62
6 12 0.21
7 5 0.09
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:48043063 original size:34 final size:34
Alignment explanation
Indices: 48043025--48043143 Score: 103
Period size: 34 Copynumber: 3.3 Consensus size: 34
48043015 TGCACTTAAG
48043025 CCATTCATGCATTCTATCATCCCATGCATTTGAT
1 CCATTCATGCATTCTATCATCCCATGCATTTGAT
** * * * * *
48043059 CCATTCATGGACTAGCCTTTAATGTCCATACATGCACTTAAG
1 CCATTCAT-G-C-ATTCTATCA--TCC---CATGCATTTGAT
48043101 CCATTCATGCATTCTATCATCCCATGCATTTGAT
1 CCATTCATGCATTCTATCATCCCATGCATTTGAT
48043135 CCATTCATG
1 CCATTCATG
48043144 GACTAGCCTT
Statistics
Matches: 63, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
34 26 0.41
35 1 0.02
36 1 0.02
37 8 0.13
39 8 0.13
40 1 0.02
41 1 0.02
42 17 0.27
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (34 bp):
CCATTCATGCATTCTATCATCCCATGCATTTGAT
Found at i:48043134 original size:76 final size:76
Alignment explanation
Indices: 48043008--48043170 Score: 326
Period size: 76 Copynumber: 2.1 Consensus size: 76
48042998 GAGACAGCCA
48043008 CCATACATGCACTTAAGCCATTCATGCATTCTATCATCCCATGCATTTGATCCATTCATGGACTA
1 CCATACATGCACTTAAGCCATTCATGCATTCTATCATCCCATGCATTTGATCCATTCATGGACTA
48043073 GCCTTTAATGT
66 GCCTTTAATGT
48043084 CCATACATGCACTTAAGCCATTCATGCATTCTATCATCCCATGCATTTGATCCATTCATGGACTA
1 CCATACATGCACTTAAGCCATTCATGCATTCTATCATCCCATGCATTTGATCCATTCATGGACTA
48043149 GCCTTTAATGT
66 GCCTTTAATGT
48043160 CCATACATGCA
1 CCATACATGCA
48043171 TTCGACACAT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 87 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (76 bp):
CCATACATGCACTTAAGCCATTCATGCATTCTATCATCCCATGCATTTGATCCATTCATGGACTA
GCCTTTAATGT
Found at i:48043636 original size:30 final size:30
Alignment explanation
Indices: 48043540--48043636 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
48043530 TAAATTAAAA
* * *
48043540 TGAGCAAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
48043570 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
*
48043600 TAAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
48043629 ATGAGCTA
1 -TGAGCTA
48043637 GGAGTGAGCT
Statistics
Matches: 49, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
29 1 0.02
30 48 0.98
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:48049542 original size:30 final size:30
Alignment explanation
Indices: 48049447--48049544 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
48049437 TAAACTAAAA
*
48049447 TGAGCTAAGCTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAG-ATTTAGCTCGTGAGCTAAAGT
* * * * * *
48049478 TGAGCTGAGATTAAACTCCTAAGCTTAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
*
48049508 TGAGCTAAGGTTTAGCTCGTGAGCTGAAAG-
1 TGAGCTAAGATTTAGCTCGTGAGCT-AAAGT
48049538 TGAGCTA
1 TGAGCTA
48049545 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 3
0.75 0.20 0.04
Matches are distributed among these distances:
30 41 0.79
31 11 0.21
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:48049824 original size:30 final size:30
Alignment explanation
Indices: 48049729--48049825 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
48049719 AGCTCACTCC
* * *
48049729 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTTACGAGCTAAAGCT
* * **
48049759 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTTACGAGCTAAAG-CT
*
48049789 CAGCTCAACTTTAGCTTACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTTACGAGCTAAAGCT
48049819 TAGCTCA
1 TAGCTCA
48049826 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.82
31 7 0.14
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTTACGAGCTAAAGCT
Found at i:48052536 original size:11 final size:12
Alignment explanation
Indices: 48052504--48052534 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
48052494 TTGAGAGAAC
48052504 TTGAAAAAGCCT
1 TTGAAAAAGCCT
48052516 TTGAAAAAGCCT
1 TTGAAAAAGCCT
48052528 TTGAAAA
1 TTGAAAA
48052535 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:48057034 original size:23 final size:22
Alignment explanation
Indices: 48056982--48057034 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
48056972 TCCACGTCTT
*
48056982 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
48057004 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
48057027 TTTCTTTT
1 TTTCTTTT
48057035 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:48059672 original size:30 final size:30
Alignment explanation
Indices: 48059593--48059673 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
48059583 ACTCGTATCA
*
48059593 CACGAGCTAAACCTTAGCTCAACTTCAGCT
1 CACGAGCTAAAGCTTAGCTCAACTTCAGCT
* * ** * *
48059623 TAGGAG-TTTAGCCTCAGCTCAACTTTAGCT
1 CACGAGCTAAAG-CTTAGCTCAACTTCAGCT
48059653 CACGAGCTAAAGCTTAGCTCA
1 CACGAGCTAAAGCTTAGCTCA
48059674 TTTTAGTTTA
Statistics
Matches: 37, Mismatches: 12, Indels: 4
0.70 0.23 0.08
Matches are distributed among these distances:
29 2 0.05
30 32 0.86
31 3 0.08
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (30 bp):
CACGAGCTAAAGCTTAGCTCAACTTCAGCT
Found at i:48064280 original size:13 final size:12
Alignment explanation
Indices: 48064242--48064273 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
48064232 ACTTCAAAAA
48064242 TTTTTTTTGAAT
1 TTTTTTTTGAAT
48064254 TTTTTTTTGAAT
1 TTTTTTTTGAAT
48064266 TTTTTTTT
1 TTTTTTTT
48064274 CAAATTTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.81
Consensus pattern (12 bp):
TTTTTTTTGAAT
Found at i:48065949 original size:20 final size:20
Alignment explanation
Indices: 48065903--48065949 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
48065893 AGCTCGTTTC
*
48065903 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
48065923 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
48065943 CAGCTCA
1 CAGCTCA
48065950 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:48067501 original size:22 final size:22
Alignment explanation
Indices: 48067476--48067539 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
48067466 ATCAAAATTC
* **
48067476 AAAAA-AAAAAGAAGTGAGCAA
1 AAAAACAAAAAAAAGTGAAAAA
*
48067497 AAAAAGAAAAAAAAGT-AAAAA
1 AAAAACAAAAAAAAGTGAAAAA
48067518 AAAAACAAAAAAAAAGTGAAAA
1 AAAAAC-AAAAAAAAGTGAAAA
48067540 GTCTTGTGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.36
22 19 0.53
23 4 0.11
ACGTcount: A:0.80, C:0.03, G:0.12, T:0.05
Consensus pattern (22 bp):
AAAAACAAAAAAAAGTGAAAAA
Done.