Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 121513442
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5870000 characters in sequence are not A, C, G, or T
File 151 of 366
Found at i:50373042 original size:27 final size:27
Alignment explanation
Indices: 50372985--50373042 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
50372975 CTTTGCCGAT
* * * *
50372985 CCATGGTGATCAACAATCTGTACCAAG
1 CCATGATGATCAACAACCTATACCAAA
**
50373012 CCATGATGATCAACAACCTATGTCAAA
1 CCATGATGATCAACAACCTATACCAAA
50373039 CCAT
1 CCAT
50373043 ATTACCAACT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.28, G:0.14, T:0.22
Consensus pattern (27 bp):
CCATGATGATCAACAACCTATACCAAA
Found at i:50373155 original size:171 final size:171
Alignment explanation
Indices: 50372870--50373212 Score: 596
Period size: 171 Copynumber: 2.0 Consensus size: 171
50372860 CCTGTGGCTT
*
50372870 ATATTACCAACTATGATTCCCATCCAGTACAAATCAATGAGCGAGTGGCAAAACAACCTAGGAGG
1 ATATTACCAACTATGATCCCCATCCAGTACAAATCAATGAGCGAGTGGCAAAACAACCTAGGAGG
*
50372935 AAGAGACCTAATTTAAGATCAAGCCATGGTCATCGACAACCTTTGCCGATCCATGGTGATCAACA
66 AAGAGACCTAATTTAAGATCAAGCCATGGTCATCAACAACCTTTGCCGATCCATGGTGATCAACA
50373000 ATCTGTACCAAGCCATGATGATCAACAACCTATGTCAAACC
131 ATCTGTACCAAGCCATGATGATCAACAACCTATGTCAAACC
*
50373041 ATATTACCAACTATGATCCCCATCCAGTACAAATCAATGAGCGAGTGGCAAAACTACCTAGGAGG
1 ATATTACCAACTATGATCCCCATCCAGTACAAATCAATGAGCGAGTGGCAAAACAACCTAGGAGG
** * * *
50373106 AAGAGACCTCGTTTAAGATCAAGCCATGGTCGTCAACAACTTTTGCCGATTCATGGTGATCAACA
66 AAGAGACCTAATTTAAGATCAAGCCATGGTCATCAACAACCTTTGCCGATCCATGGTGATCAACA
* *
50373171 ATCTGTACTAAGCCATGGTGATCAACAACCTATGTCAAACC
131 ATCTGTACCAAGCCATGATGATCAACAACCTATGTCAAACC
50373212 A
1 A
50373213 CGGTGATCAA
Statistics
Matches: 162, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
171 162 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.22
Consensus pattern (171 bp):
ATATTACCAACTATGATCCCCATCCAGTACAAATCAATGAGCGAGTGGCAAAACAACCTAGGAGG
AAGAGACCTAATTTAAGATCAAGCCATGGTCATCAACAACCTTTGCCGATCCATGGTGATCAACA
ATCTGTACCAAGCCATGATGATCAACAACCTATGTCAAACC
Found at i:50373187 original size:27 final size:26
Alignment explanation
Indices: 50373157--50373252 Score: 122
Period size: 27 Copynumber: 3.6 Consensus size: 26
50373147 TTTGCCGATT
50373157 CATGGTGATCAACAATCTGTACTAAGC
1 CATGGTGATCAACAATCTGTAC-AAGC
* *
50373184 CATGGTGATCAACAACCTATGT-CAAAC
1 CATGGTGATCAACAA--TCTGTACAAGC
*
50373211 CACGGTGATCAACAATCTGTACCAAGC
1 CATGGTGATCAACAATCTGTA-CAAGC
50373238 CATGGTGATCAACAA
1 CATGGTGATCAACAA
50373253 CCTGGACCAC
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
25 4 0.07
27 50 0.85
28 1 0.02
29 4 0.07
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (26 bp):
CATGGTGATCAACAATCTGTACAAGC
Found at i:50383603 original size:16 final size:16
Alignment explanation
Indices: 50383582--50383612 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50383572 TTCACTACTA
*
50383582 TGTCTTTTGTATTTTT
1 TGTCTTTTATATTTTT
50383598 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
50383613 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.10, T:0.74
Consensus pattern (16 bp):
TGTCTTTTATATTTTT
Found at i:50385851 original size:39 final size:39
Alignment explanation
Indices: 50385797--50386033 Score: 393
Period size: 39 Copynumber: 6.1 Consensus size: 39
50385787 AATTTTATTA
*
50385797 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
50385836 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
50385875 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
50385914 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
50385953 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
50385992 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
50386031 CCA
1 CCA
50386034 TACACATTTC
Statistics
Matches: 184, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 184 1.00
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.23
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:50386003 original size:117 final size:117
Alignment explanation
Indices: 50385797--50386033 Score: 447
Period size: 117 Copynumber: 2.0 Consensus size: 117
50385787 AATTTTATTA
50385797 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
50385862 CCCGGATATATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
66 CCCGGATATATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
50385914 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
* *
50385979 CCCGGATATATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
66 CCCGGATATATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
50386031 CCA
1 CCA
50386034 TACACATTTC
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
117 117 1.00
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.23
Consensus pattern (117 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
CCCGGATATATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:50393371 original size:27 final size:27
Alignment explanation
Indices: 50393340--50393517 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
50393330 TAAATTGTAC
50393340 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
50393367 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50393393 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
50393421 GGCACTAAGTCTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50393449 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50393476 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50393503 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50393518 GACTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 103 0.82
28 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50393481 original size:82 final size:81
Alignment explanation
Indices: 50393341--50393496 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
50393331 AAATTGTACA
* * *
50393341 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAAGTGT
1 GCACTAAGTCTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
50393406 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
50393422 GCACTAAGTCTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTCTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACTAAGT
*
50393486 GTGCGAGTTGA
64 GTGCGAATTGA
50393497 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTCTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50393508 original size:82 final size:81
Alignment explanation
Indices: 50393337--50393517 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
50393327 GATTAAATTG
* *
50393337 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
50393402 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *** *
50393418 TGCGGCACTAAGTCTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGAT-GCACT
* **
50393482 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50393500 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50393518 GACTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 17 0.21
82 64 0.79
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50401481 original size:27 final size:27
Alignment explanation
Indices: 50401450--50401600 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
50401440 TAAATTGTAC
50401450 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
50401477 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
50401503 ATGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGA-TTTGACTATGT
* *
50401532 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50401559 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50401586 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50401601 GACTCAATAT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
27 83 0.79
28 21 0.20
29 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50401537 original size:55 final size:55
Alignment explanation
Indices: 50401450--50401600 Score: 191
Period size: 55 Copynumber: 2.8 Consensus size: 55
50401440 TAAATTGTAC
* *
50401450 AGCACTAAGTGTGCGA-TTTGACTATGTTGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGT
*** *
50401503 ATGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT
1 A-GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGT
* * *
50401559 AGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
50401601 GACTCAATAT
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
53 1 0.01
54 37 0.43
55 47 0.55
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAACGAATACGT
Found at i:50403233 original size:39 final size:39
Alignment explanation
Indices: 50403179--50403415 Score: 375
Period size: 39 Copynumber: 6.1 Consensus size: 39
50403169 AATTTTATTA
*
50403179 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
50403218 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
50403257 CCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
50403296 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
50403335 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
50403374 CCAGCACAAAGCCTGCGAGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
50403413 CCA
1 CCA
50403416 TACACATTTC
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 181 1.00
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:50403385 original size:117 final size:117
Alignment explanation
Indices: 50403179--50403415 Score: 429
Period size: 117 Copynumber: 2.0 Consensus size: 117
50403169 AATTTTATTA
50403179 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
*
50403244 CCCGGATATATTTCCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTT
66 CCCGGATATATTTCCAGCACAAAGCCTACGAGACTTTAGCCCGGATACATTT
*
50403296 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
* * *
50403361 CCCGGATATATTTCCAGCACAAAGCCTGCGAGTCTTTAGCCCGGATATATTT
66 CCCGGATATATTTCCAGCACAAAGCCTACGAGACTTTAGCCCGGATACATTT
50403413 CCA
1 CCA
50403416 TACACATTTC
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (117 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
CCCGGATATATTTCCAGCACAAAGCCTACGAGACTTTAGCCCGGATACATTT
Found at i:50409550 original size:14 final size:14
Alignment explanation
Indices: 50409531--50409561 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
50409521 AATTTGTGAA
*
50409531 AAAATAAATATAAT
1 AAAATAAATAAAAT
50409545 AAAATAAATAAAAT
1 AAAATAAATAAAAT
50409559 AAA
1 AAA
50409562 GAACACACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:50411178 original size:11 final size:12
Alignment explanation
Indices: 50411148--50411181 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
50411138 GTATGTTTAC
50411148 TTATTATATAAG
1 TTATTATATAAG
50411160 TATATTAT-TAAG
1 T-TATTATATAAG
50411172 TTATTATATA
1 TTATTATATA
50411182 TATACATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (12 bp):
TTATTATATAAG
Found at i:50412439 original size:6 final size:6
Alignment explanation
Indices: 50412416--50412453 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
50412406 GTACTTTGTG
* *
50412416 TACTG- TACTGC TACTGT TATTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
50412454 CCTTACTGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:50412662 original size:17 final size:17
Alignment explanation
Indices: 50412618--50412665 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
50412608 ACTAAATCAA
50412618 TGACTGTTACTGAATAAC
1 TGACTGTTACTG-ATAAC
* * *
50412636 TGATTATTACTGATGAC
1 TGACTGTTACTGATAAC
50412653 TGACTGTTACTGA
1 TGACTGTTACTGA
50412666 ACAATAAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38
Consensus pattern (17 bp):
TGACTGTTACTGATAAC
Found at i:50419215 original size:6 final size:6
Alignment explanation
Indices: 50419200--50419246 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
50419190 CTGTGTACCG
* * *
50419200 TACTGC TACTGT TACTGT TACTGT TACTGT TAATGT TATTGT TACTG
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTG
50419247 ACACGGTGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.19, C:0.15, G:0.17, T:0.49
Consensus pattern (6 bp):
TACTGT
Found at i:50419406 original size:17 final size:19
Alignment explanation
Indices: 50419377--50419416 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
50419367 TGTCCGCTAC
50419377 TGAA-TAATCGACT-TTAT
1 TGAATTAATCGACTGTTAT
50419394 TGAATTAAT-GACTGTTAT
1 TGAATTAATCGACTGTTAT
50419412 TGAAT
1 TGAAT
50419417 AATTGATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (19 bp):
TGAATTAATCGACTGTTAT
Found at i:50419419 original size:17 final size:17
Alignment explanation
Indices: 50419377--50419419 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
50419367 TGTCCGCTAC
50419377 TGAATAATCGACTTTAT
1 TGAATAATCGACTTTAT
50419394 TGAATTAAT-GACTGTTAT
1 TGAA-TAATCGACT-TTAT
50419412 TGAATAAT
1 TGAATAAT
50419420 TGATTATTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.42
Consensus pattern (17 bp):
TGAATAATCGACTTTAT
Found at i:50422149 original size:31 final size:30
Alignment explanation
Indices: 50422068--50422152 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 30
50422058 TCAATCTCAG
50422068 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACT-GGCCGAAGCCTTTACATTATT
* * *
50422098 CGTATCACTAGCCGAAGCCTTTTCATTATT
1 CATATCACTGGCCGAAGCCTTTACATTATT
*
50422128 CATATCACTGGACTGAAGCCTTTAC
1 CATATCACTGG-CCGAAGCCTTTAC
50422153 TGTAACAATA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
30 32 0.70
31 14 0.30
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (30 bp):
CATATCACTGGCCGAAGCCTTTACATTATT
Found at i:50422415 original size:26 final size:25
Alignment explanation
Indices: 50422370--50422440 Score: 106
Period size: 26 Copynumber: 2.8 Consensus size: 25
50422360 CTCTTTTAAT
*
50422370 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
50422395 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGC-AAAGCCCTTTTCGATA
*
50422421 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
50422441 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
25 19 0.45
26 23 0.55
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:50422506 original size:18 final size:19
Alignment explanation
Indices: 50422483--50422523 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
50422473 GCATAAATGA
50422483 ATAC-ATCATGTGCAAATC
1 ATACAATCATGTGCAAATC
*
50422501 ATACATATCATGTGCATATC
1 ATACA-ATCATGTGCAAATC
50422521 ATA
1 ATA
50422524 TCAAATCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 4 0.20
20 16 0.80
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (19 bp):
ATACAATCATGTGCAAATC
Found at i:50435655 original size:51 final size:51
Alignment explanation
Indices: 50435542--50435647 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 51
50435532 ATACCACATA
* *
50435542 ACATGTAA-CACATCCATAAGAAACTCGTACCTCTCAACGAGCTCAGATGTT
1 ACATG-AATCACATCCATAAGAAACTCGGACCTCTCAACGAGCTCAGATGCT
* *
50435593 ACATGAATCACATCCACTATG-AACTCGGACCTCTCAACGAGCTCGGATGCT
1 ACATGAATCACATCCA-TAAGAAACTCGGACCTCTCAACGAGCTCAGATGCT
50435644 ACAT
1 ACAT
50435648 ATCTCACAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
50 2 0.04
51 44 0.90
52 3 0.06
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (51 bp):
ACATGAATCACATCCATAAGAAACTCGGACCTCTCAACGAGCTCAGATGCT
Found at i:50442518 original size:13 final size:13
Alignment explanation
Indices: 50442490--50442533 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
50442480 TTGTCATGAG
*
50442490 AAATTAATTTAGTT
1 AAATTAA-TTAATT
* *
50442504 AATTTGATTAATT
1 AAATTAATTAATT
50442517 AAATTAATTAATT
1 AAATTAATTAATT
50442530 AAAT
1 AAAT
50442534 AAAACTTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 20 0.80
14 5 0.20
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (13 bp):
AAATTAATTAATT
Found at i:50442884 original size:20 final size:19
Alignment explanation
Indices: 50442854--50442891 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
50442844 AATTAGTGAG
50442854 AATTAATTTTCTAAGAATA
1 AATTAATTTTCTAAGAATA
*
50442873 AATTATATTTTCTAGGAAT
1 AATTA-ATTTTCTAAGAAT
50442892 TACAATTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (19 bp):
AATTAATTTTCTAAGAATA
Found at i:50447742 original size:50 final size:48
Alignment explanation
Indices: 50447440--50448283 Score: 1325
Period size: 48 Copynumber: 17.2 Consensus size: 48
50447430 TAAGCTATTG
* * *
50447440 GTGAAATTGATGTATAAAATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAA-T-ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50447490 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-GT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
50447537 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
50447585 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50447633 GTGAAATATGTATGAGATATGTATATATGGTAAAG-CGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50447680 GTGAAATGTATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAA--TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50447730 GTGAAATGTATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAA--TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
50447780 GTGAAATGTATATATGAGATATGTATATGTGGTAAAGTCGAATGGCTAAT
1 GTGAAA--TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
50447830 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50447878 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
50447926 GTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGTTAAT
1 GTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50447976 GTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50448026 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50448074 GTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTG--A-A-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50448126 GTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AAT
* *
50448174 GTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50448224 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
50448272 GTGAAATATGTA
1 GTGAAATATGTA
50448284 GGCGATGTGT
Statistics
Matches: 758, Mismatches: 22, Indels: 30
0.94 0.03 0.04
Matches are distributed among these distances:
47 66 0.09
48 349 0.46
49 37 0.05
50 260 0.34
51 2 0.00
52 44 0.06
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
Found at i:50448279 original size:98 final size:98
Alignment explanation
Indices: 50447440--50448280 Score: 1367
Period size: 98 Copynumber: 8.6 Consensus size: 98
50447430 TAAGCTATTG
* * * *
50447440 GTGAAATTGATGTATAAAATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTAT
1 GTGAAA-T-ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAT
*
50447503 GAGATATGTATATGTGGTAAAGCCGAATGGCT-GT
64 GAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50447537 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGA
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGA
50447600 GATATGTATATGTGGTAAAGCCGAATGGCTAAT
66 GATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
50447633 GTGAAATATGTATGAGATATGTATATATGGTAAAG-CGAATGGCTAATGTGAAATGTATATATGA
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGA
50447697 GATATGTATATGTGGTAAAGCCGAATGGCTAAT
66 GATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
50447730 GTGAAATGTATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTATATAT
1 GTGAAA--TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAT
*
50447795 GAGATATGTATATGTGGTAAAGTCGAATGGCTAAT
64 GAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50447830 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGA
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGA
*
50447893 GATATGTATATGTGGTAAAGCCGAATGGTTAAT
66 GATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
50447926 GTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATAT
1 GTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAT
50447991 GAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
64 GAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50448026 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATATAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATAT
50448091 GAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
64 GAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50448126 GTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATG
*
50448190 AGATATGTATATGTGGTAAAGCCGAATGGCTAGT
65 AGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
50448224 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
50448281 GTAGGCGATG
Statistics
Matches: 706, Mismatches: 24, Indels: 27
0.93 0.03 0.04
Matches are distributed among these distances:
95 98 0.14
96 80 0.11
97 57 0.08
98 230 0.33
99 37 0.05
100 204 0.29
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (98 bp):
GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGA
GATATGTATATGTGGTAAAGCCGAATGGCTAAT
Found at i:50448538 original size:37 final size:37
Alignment explanation
Indices: 50448432--50448538 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
50448422 AAATATATTT
* *
50448432 CGGGTAAGACCTGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
50448469 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
* * *
50448506 TGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTT
50448539 CATCTGAGCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
Found at i:50467575 original size:27 final size:27
Alignment explanation
Indices: 50467545--50467722 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
50467535 ATATTGAGTC
* *
50467545 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
50467572 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
50467599 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
50467627 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
50467654 CGCACAGTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
50467681 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
50467708 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50467723 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:50470989 original size:22 final size:23
Alignment explanation
Indices: 50470961--50471011 Score: 95
Period size: 22 Copynumber: 2.3 Consensus size: 23
50470951 TAATTTTTAA
50470961 ATTTAGAATTATTTAGTGA-AAT
1 ATTTAGAATTATTTAGTGATAAT
50470983 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
50471006 ATTTAG
1 ATTTAG
50471012 GAAAAATCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:50472017 original size:20 final size:18
Alignment explanation
Indices: 50471982--50472035 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
50471972 TTATTTATCC
50471982 ATTTATTTTATTTTTTTAA
1 ATTTATTTT-TTTTTTTAA
*
50472001 ATTTATTTTTTCATTTTTGA
1 ATTTATTTTTT--TTTTTAA
*
50472021 ATCTATTTTTATTTT
1 ATTTATTTTT-TTTT
50472036 ATTTATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 2 0.07
19 12 0.40
20 15 0.50
21 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (18 bp):
ATTTATTTTTTTTTTTAA
Found at i:50473946 original size:6 final size:6
Alignment explanation
Indices: 50473935--50474151 Score: 207
Period size: 6 Copynumber: 35.8 Consensus size: 6
50473925 AACCAAAATG
*
50473935 AGAATC AGAATC AGAATC AGTAAT- AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
*
50473983 AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC
1 AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* * * *
50474032 AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* *
50474081 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC
*
50474129 AAAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT
50474152 GTGAATGCAA
Statistics
Matches: 175, Mismatches: 18, Indels: 36
0.76 0.08 0.16
Matches are distributed among these distances:
5 14 0.08
6 146 0.83
7 13 0.07
8 2 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:50474057 original size:85 final size:85
Alignment explanation
Indices: 50473935--50474151 Score: 382
Period size: 85 Copynumber: 2.6 Consensus size: 85
50473925 AACCAAAATG
* * *
50473935 AGAATCAGAATCAGAATCAGTAATAGAATCAGAATCAGAATCA-ATATTAGGTGACAGAATCAGA
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGA-ATTAGGTGACAGAATCAGA
50473999 ATCAGAATCAGTAACAGAATC
65 ATCAGAATCAGTAACAGAATC
50474020 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
50474085 TCAGAATCAGTAACAGAATC
66 TCAGAATCAGTAACAGAATC
*
50474105 AGAATCAGAATCAGTATTAGTAACAAAATCAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAAT
50474152 GTGAATGCAA
Statistics
Matches: 127, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
85 126 0.99
86 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
TCAGAATCAGTAACAGAATC
Found at i:50474339 original size:27 final size:27
Alignment explanation
Indices: 50474269--50474342 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
50474259 AGCATGGCTG
* *
50474269 CCAG-AACAGAT-ATCGTGACAGAGTCA
1 CCAGAAACAGATAAT-GTGGCAGAGCCA
*
50474295 CCAGAAACAGATATTGTGGCAGAGCCA
1 CCAGAAACAGATAATGTGGCAGAGCCA
50474322 CCA-AAATCAGATAATGTGGCA
1 CCAGAAA-CAGATAATGTGGCA
50474343 AACCCACCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
26 7 0.17
27 33 0.80
28 1 0.02
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAAACAGATAATGTGGCAGAGCCA
Found at i:50474349 original size:27 final size:27
Alignment explanation
Indices: 50474293--50474350 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
50474283 GTGACAGAGT
* * *
50474293 CACCAGAAACAGATATTGTGGCAGAGC
1 CACCAGAAACAGATAATGTGGCAAACC
50474320 CACCA-AAATCAGATAATGTGGCAAACC
1 CACCAGAAA-CAGATAATGTGGCAAACC
50474347 CACC
1 CACC
50474351 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 3 0.11
27 24 0.89
ACGTcount: A:0.40, C:0.28, G:0.19, T:0.14
Consensus pattern (27 bp):
CACCAGAAACAGATAATGTGGCAAACC
Found at i:50474555 original size:22 final size:22
Alignment explanation
Indices: 50474507--50474565 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
50474497 GTAAATACGT
*
50474507 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
50474529 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
50474551 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
50474566 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:50474732 original size:27 final size:26
Alignment explanation
Indices: 50474653--50474735 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
50474643 TCGATCAGTC
* * *
50474653 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
50474679 ATACAGATATTGTAGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
50474706 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
50474733 AAC
1 AAC
50474736 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:50474964 original size:27 final size:27
Alignment explanation
Indices: 50474934--50475129 Score: 203
Period size: 27 Copynumber: 7.3 Consensus size: 27
50474924 GGGGCAAAAT
* * * *
50474934 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
50474961 GGTAGTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50474988 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* **
50475015 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
50475042 AGTAATTCTACCCCATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
50475069 AGTAATTCTACCCTATAGGGGTTTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
50475096 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50475123 AGTAATT
1 GGTAATT
50475130 TCACAATCAA
Statistics
Matches: 140, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:50475000 original size:54 final size:54
Alignment explanation
Indices: 50474934--50475129 Score: 230
Period size: 54 Copynumber: 3.6 Consensus size: 54
50474924 GGGGCAAAAT
* * * *
50474934 GGTAATTTTACCCCACAAAGGTATCTCGGTAGTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
50474988 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * ** * *
50475042 AGTAATTCTACCCCATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTTTTTC
1 GGTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
50475096 GATAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCCACAAGGGTATTTCGGTAATT
50475130 TCACAATCAA
Statistics
Matches: 118, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 118 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:50475078 original size:81 final size:81
Alignment explanation
Indices: 50474979--50475129 Score: 239
Period size: 81 Copynumber: 1.9 Consensus size: 81
50474969 TACCCTACAG
* * *
50474979 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACGGGGGTATTTCAG
1 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAG
50475044 TAATTCTACCCCATAA
66 TAATTCTACCCCATAA
* * * *
50475060 GGGTATTTTAGTAATTCTACCCTATAGGGGTTTTTCGATAATTCTACCCTACAGGGGTATTTCAG
1 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAG
50475125 TAATT
66 TAATT
50475130 TCACAATCAA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAG
TAATTCTACCCCATAA
Found at i:50475196 original size:53 final size:54
Alignment explanation
Indices: 50475124--50475249 Score: 175
Period size: 54 Copynumber: 2.4 Consensus size: 54
50475114 GGGTATTTCA
* * * *
50475124 GTAATTTCAC-AATCAAGGGTAAAACAGTAATTCTGTAAA-CGAGGGTAAAATG
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGCTAAAATG
* *
50475176 GTAATTTTACAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGCTAAAATG
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGCTAAAATG
*
50475230 GTAATTCTACAAATCGAGGG
1 GTAATTTTACAAATCGAGGG
50475250 CATTTCAGTA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
52 9 0.14
53 25 0.38
54 31 0.48
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (54 bp):
GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGCTAAAATG
Found at i:50475205 original size:27 final size:27
Alignment explanation
Indices: 50475134--50475249 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
50475124 GTAATTTCAC
* * **
50475134 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTACA
* *
50475161 AA-CGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTACA
* *
50475187 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTACA
* *
50475214 AATCGAGGCTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTACA
50475241 AATCGAGGG
1 AATCGAGGG
50475250 CATTTCAGTA
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 20 0.27
27 53 0.73
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTACA
Found at i:50475286 original size:26 final size:26
Alignment explanation
Indices: 50475229--50475321 Score: 87
Period size: 27 Copynumber: 3.5 Consensus size: 26
50475219 AGGCTAAAAT
* * *
50475229 GGTAATTCTACAAATCGAGGGCATTTC
1 GGTAATTTTAC-AATCGAGGGTACTTC
* *
50475256 AGTAATTTTACAATCGACGGTACTTC
1 GGTAATTTTACAATCGAGGGTACTTC
* * * *
50475282 GGTAATTTTATAAACCGGGGGTACTTT
1 GGTAATTTTA-CAATCGAGGGTACTTC
50475309 GGTAATTTTACAA
1 GGTAATTTTACAA
50475322 CTGGGGGTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
26 23 0.43
27 30 0.57
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.34
Consensus pattern (26 bp):
GGTAATTTTACAATCGAGGGTACTTC
Found at i:50475312 original size:27 final size:26
Alignment explanation
Indices: 50475274--50475342 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
50475264 TACAATCGAC
*
50475274 GGTACTTCGGTAATTTTATAAACCGGG
1 GGTACTTTGGTAATTTTA-AAACCGGG
* *
50475301 GGTACTTTGGTAATTTTACAACTGGG
1 GGTACTTTGGTAATTTTAAAACCGGG
* *
50475327 GGTATTTTAGTAATTT
1 GGTACTTTGGTAATTT
50475343 GGCAAACTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 20 0.54
27 17 0.46
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.41
Consensus pattern (26 bp):
GGTACTTTGGTAATTTTAAAACCGGG
Found at i:50476223 original size:14 final size:14
Alignment explanation
Indices: 50476204--50476239 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
50476194 CTCCCTTAAA
50476204 GAAATTTCGTCCTC
1 GAAATTTCGTCCTC
50476218 GAAATTTCGTCCTC
1 GAAATTTCGTCCTC
50476232 GAAATTTC
1 GAAATTTC
50476240 CATCTAACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (14 bp):
GAAATTTCGTCCTC
Found at i:50477341 original size:6 final size:6
Alignment explanation
Indices: 50477330--50477668 Score: 261
Period size: 6 Copynumber: 55.8 Consensus size: 6
50477320 AACCAAAATG
*
50477330 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* * *
50477378 TGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGTAA-C
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AG-AATC
* *
50477427 AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* * *
50477475 AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
* * *
50477524 AG-GTGAC AGAATC AAAATC AGAATC A-ATAAC AGAATC AGAATC AGAATC
1 AGAAT--C AGAATC AGAATC AGAATC AGA-ATC AGAATC AGAATC AGAATC
* * * *
50477573 AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATT AGGTGAT- AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * * * *
50477622 AGAATC AGAATT AGTATT AGTAA-C AAAATC AGAATC AGAATC TGAAT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAAT
50477669 GTGAATGCAA
Statistics
Matches: 267, Mismatches: 38, Indels: 56
0.74 0.11 0.16
Matches are distributed among these distances:
5 19 0.07
6 225 0.84
7 17 0.06
8 6 0.02
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:50477417 original size:79 final size:79
Alignment explanation
Indices: 50477330--50477659 Score: 388
Period size: 79 Copynumber: 4.2 Consensus size: 79
50477320 AACCAAAATG
*
50477330 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCA-ATATTAGTAACTGAATCAGAATCAGAA
1 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGATATTAGTAACAGAATCAGAATCAGAA
*
50477394 TCAGAATTAGGTGAC
66 TCAGAATTA-GTAAC
50477409 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAG-TATTAGTAACAGAATCAGAATCAGAA
1 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGATATTAGTAACAGAATCAGAATCAGAA
*
50477473 TCAGAATTAGGTGAC
66 TCAGAATTA-GTAAC
* * * *
50477488 AGAATCAGAATCAG-AATCAGAATCAGAATCAGAATTAGGTGA-CAG-AATCAAAATCAGAATCA
1 AGAATCAGAATCAGTAA-CAGAATCAGAATCAGAATCAGAT-ATTAGTAA-CAGAATCAGAATCA
* *
50477550 -ATAACAGAATCAG-AATC
63 GA-ATCAGAATTAGTAA-C
* * * *
50477567 AGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGA-ATTAGGTGATAGAATCAGAATCAGA
1 AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGATATTA-GTAACAGAATCAGAATCAGA
* *
50477631 ATTAGTATTAGTAAC
65 ATCAGAATTAGTAAC
*
50477646 AAAATCAGAATCAG
1 AGAATCAGAATCAG
50477660 AATCTGAATG
Statistics
Matches: 216, Mismatches: 22, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.00
78 4 0.02
79 180 0.83
80 30 0.14
81 1 0.00
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (79 bp):
AGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGATATTAGTAACAGAATCAGAATCAGAA
TCAGAATTAGTAAC
Found at i:50477573 original size:128 final size:122
Alignment explanation
Indices: 50477379--50477632 Score: 436
Period size: 128 Copynumber: 2.0 Consensus size: 122
50477369 ATTAGTAACT
*
50477379 GAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGTAACAGAATCAGAATCAGAAT
1 GAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAATAACAGAATCAGAATCAGAAT
50477444 CAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCA
66 CAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCA
50477501 GAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATCAGAATCAATAACAGAATCAGAAT
1 GAATCAGAATCAGAATCAGAATTAGGTGACAG------AATCAGAATCAATAACAGAATCAGAAT
*
50477566 CAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGATAGAATCAGAATCA
60 CAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCA
50477629 GAAT
1 GAAT
50477633 TAGTATTAGT
Statistics
Matches: 124, Mismatches: 2, Indels: 6
0.94 0.02 0.05
Matches are distributed among these distances:
122 32 0.26
128 92 0.74
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (122 bp):
GAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAATAACAGAATCAGAATCAGAAT
CAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCA
Found at i:50477652 original size:85 final size:85
Alignment explanation
Indices: 50477499--50477659 Score: 243
Period size: 85 Copynumber: 1.9 Consensus size: 85
50477489 GAATCAGAAT
*
50477499 CAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATCAGAATCAATAACAGAATCAGA
1 CAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATCAGAATCAATAACAGAATCAAA
50477564 ATCAGAATCAGTATTAGTAA
66 ATCAGAATCAGTATTAGTAA
* * * * **
50477584 CAGAATCAGAATCAGAATCAGAATTAGGTGATAGAATCAGAATCAGAATTAGTATTAGTAA-CAA
1 CAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATCAGAATCAATAACAG-AATCAA
50477648 AATCAGAATCAG
65 AATCAGAATCAG
50477660 AATCTGAATG
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
85 66 0.97
86 2 0.03
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.21
Consensus pattern (85 bp):
CAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAAAATCAGAATCAATAACAGAATCAAA
ATCAGAATCAGTATTAGTAA
Found at i:50477850 original size:27 final size:27
Alignment explanation
Indices: 50477788--50477859 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
50477778 CATGGCTGCT
* ** *
50477788 AGAA-CAGATATCGTGATAGAGTCACC
1 AGAATCAGATATTGTGGCAGAGCCACC
50477814 AGAAAT-AGATATTGTGGCAGAGCCACC
1 AG-AATCAGATATTGTGGCAGAGCCACC
*
50477841 AGAATCAGATAATGTGGCA
1 AGAATCAGATATTGTGGCA
50477860 AACCCACCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
26 5 0.13
27 33 0.87
ACGTcount: A:0.39, C:0.17, G:0.25, T:0.19
Consensus pattern (27 bp):
AGAATCAGATATTGTGGCAGAGCCACC
Found at i:50477866 original size:27 final size:27
Alignment explanation
Indices: 50477810--50477867 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
50477800 GTGATAGAGT
* * *
50477810 CACCAGAAATAGATATTGTGGCAGAGC
1 CACCAGAAATAGATAATGTGGCAAACC
50477837 CACCAG-AATCAGATAATGTGGCAAACC
1 CACCAGAAAT-AGATAATGTGGCAAACC
50477864 CACC
1 CACC
50477868 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 3 0.11
27 24 0.89
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGAAATAGATAATGTGGCAAACC
Found at i:50478072 original size:22 final size:22
Alignment explanation
Indices: 50478024--50478082 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
50478014 GTAAATACGT
*
50478024 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
50478046 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
50478068 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
50478083 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:50478249 original size:27 final size:26
Alignment explanation
Indices: 50478170--50478252 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
50478160 TCGATCGGTC
* * *
50478170 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
50478196 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
50478223 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
50478250 AAC
1 AAC
50478253 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:50478637 original size:27 final size:27
Alignment explanation
Indices: 50478451--50478639 Score: 234
Period size: 27 Copynumber: 7.0 Consensus size: 27
50478441 GGGGCAAAAT
* * ** *
50478451 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50478478 GGTAATTCTACCCTACAGGGGTACTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50478505 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50478532 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
50478559 GATAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50478586 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50478613 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50478640 AATAATTTCA
Statistics
Matches: 139, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:50478681 original size:27 final size:27
Alignment explanation
Indices: 50478651--50478875 Score: 256
Period size: 27 Copynumber: 8.3 Consensus size: 27
50478641 ATAATTTCAC
* *
50478651 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
50478678 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
50478705 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
50478732 AATCGAGGGTAAAACAGAAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
50478759 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
50478786 AATCGAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
50478813 AATCGAGGGCGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * **
50478840 AATCGAGGCTACAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
50478867 AATCGAGGG
1 AATCGAGGG
50478876 CATTTCAGTA
Statistics
Matches: 168, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 164 0.98
28 2 0.01
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.25
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:50478965 original size:26 final size:26
Alignment explanation
Indices: 50478856--50478968 Score: 93
Period size: 26 Copynumber: 4.3 Consensus size: 26
50478846 GGCTACAATG
* * *
50478856 GTAATTCTACAAATCGAGGGCATTTCA
1 GTAATTTTAC-AATCGGGGGTATTTCA
** *
50478883 GTAATTTTACAATCGACGGTATTTCG
1 GTAATTTTACAATCGGGGGTATTTCA
* * *
50478909 GTAATTTTATAAACCGGGGGTACTTT-G
1 GTAATTTTA-CAATCGGGGGTA-TTTCA
* *
50478936 GTAATTTTACAATTGGGGGTATTTTA
1 GTAATTTTACAATCGGGGGTATTTCA
50478962 GTAATTT
1 GTAATTT
50478969 GGTAAACTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
25 3 0.04
26 38 0.54
27 27 0.38
28 3 0.04
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAATCGGGGGTATTTCA
Found at i:50480893 original size:520 final size:518
Alignment explanation
Indices: 50479890--50480850 Score: 1197
Period size: 520 Copynumber: 1.8 Consensus size: 518
50479880 TAATCCGATG
* *
50479890 ACTAACGTAATTGCAACTTCTACAACTTAGATCTAGGCAGCTCTAAATCAGATCTGTACACAACA
1 ACTAACGTAATTGCAACTTCTACAACATAGATCTAGACAGCTCTAAATCAGATCTGTACACAACA
*
50479955 TGAATGAAACTCGATTAAAACCAGCCTTTAGAAACCCCTATAAGGTTTGACCAAAACAAGGATTA
66 TGAATGAAACTCGATTAAAACCAGCCTTTAGAAACCCCTATAAGGTTAGACCAAAACAAGGATTA
* ** * * *
50480020 ATAATTTCAAATTAGATTCAATTTTTGGTCACTTACTTACTCTATCTCGATTTATAATGAAGACA
131 ATAATTTCAAATTAGATACAATTTTTAATCACTTACTTA-TCTATCTCGATATAGAAAGAAGACA
* * *
50480085 CGAATGAGTTTAGTTGTCACTGCTGATCCATGATGTTTGGATTAGGTCCTAATAACACTCAAAAG
195 CGAATGAGTTTAGATGTCACTACTGATCCATGATGTTCGGATTAGGTCCTAATAACACTCAAAAG
* * * *
50480150 CTAGTATAGAATATTCTGCTATGCCACTAGTAACATTTGGCCAAAGAAAAAAATCAAGGGAGGAG
260 CTAGTATAGAATATTCTGCTATGCCACTAGTAACATTTGGACAAAGAAAAAAATAAAGGAAGAAG
* * * ** *
50480215 GAAACTAGATAAGATCTGACATAAAGAAAAATTACTTACTCCACCGGAATGACAGATTCGAAGAA
325 GAAACTAGATAAGATCTGACAGAAAGAAAAACTACTTACTCAACCGGAACAACAAATTCGAAGAA
* * ** * *
50480280 CCAATGAAAAATCTAAGCAGTATCGATGAATTTAGGTAGAATAATTAATCACATGAACAAAATAT
390 CCAATGAAAAATCCAAGCAGTATCGATGAATTCAGCCAGAATAATTAATCACATCAACAAAAGAT
**** * *
50480345 ACCATTTTTTAAACACTAATACACACAAATGTTATATCCACACCTTATTTACGTGAATCTGATTC
455 A-CATAGAATAAACACGAATAAACACAAATGTTATATCCACACCTTATTTACGTGAATCTGATTC
* * *
50480410 ACTAACGTAATTGCAACTTCTACAACATAGATTTAGACAGCTCTAGATCGGATCTGTACACAACA
1 ACTAACGTAATTGCAACTTCTACAACATAGATCTAGACAGCTCTAAATCAGATCTGTACACAACA
* * ** *
50480475 TGAATGAAACTTGATTAAAACTAGCCTTTAGATGCCCCTATAAGGTTCAG-CCAGAACAAGGATT
66 TGAATGAAACTCGATTAAAACCAGCCTTTAGAAACCCCTATAAGGTT-AGACCAAAACAAGGATT
* * *
50480539 AA-CATTGTCAAATTGGATACAATTTTTAATCACTTAC-T-T-TATTTCGATATAGAAAGAAGAC
130 AATAATT-TCAAATTAGATACAATTTTTAATCACTTACTTATCTATCTCGATATAGAAAGAAGAC
* *
50480600 ACGAATGAGTTTCGATGTCACTATTGATCCATGATGTTCGGATTAGGTCCTTCAATCAAAATAAC
194 ACGAATGAGTTTAGATGTCACTACTGATCCATGATGTTCGGATTAGGT-C--C--T---AATAAC
* * *
50480665 ACTCAAAAGTTAGTATAGAATATT-TGACTATGCCAC-AGTAACATTTGGACAAAGTAGAAAATA
251 ACTCAAAAGCTAGTATAGAATATTCTG-CTATGCCACTAGTAACATTTGGACAAAGAAAAAAATA
* *
50480728 AAGGAAGAAGGAAA-TGAGATAAGATTTGATC-GAAAGAAAAACTA-TTAACTCAACCGGAGCAA
315 AAGGAAGAAGGAAACT-AGATAAGATCTGA-CAGAAAGAAAAACTACTT-ACTCAACCGGAACAA
* *
50480790 CAAATTTGAAGCACCAATTGAAAAATCCAAGCAGTA-CAGATGAATTCAGCCAGAATAATTA
377 CAAATTCGAAGAACCAA-TGAAAAATCCAAGCAGTATC-GATGAATTCAGCCAGAATAATTA
50480851 GTAATTCAAC
Statistics
Matches: 379, Mismatches: 46, Indels: 28
0.84 0.10 0.06
Matches are distributed among these distances:
516 61 0.16
517 2 0.01
519 5 0.01
520 144 0.38
521 2 0.01
522 3 0.01
523 86 0.23
524 76 0.20
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.28
Consensus pattern (518 bp):
ACTAACGTAATTGCAACTTCTACAACATAGATCTAGACAGCTCTAAATCAGATCTGTACACAACA
TGAATGAAACTCGATTAAAACCAGCCTTTAGAAACCCCTATAAGGTTAGACCAAAACAAGGATTA
ATAATTTCAAATTAGATACAATTTTTAATCACTTACTTATCTATCTCGATATAGAAAGAAGACAC
GAATGAGTTTAGATGTCACTACTGATCCATGATGTTCGGATTAGGTCCTAATAACACTCAAAAGC
TAGTATAGAATATTCTGCTATGCCACTAGTAACATTTGGACAAAGAAAAAAATAAAGGAAGAAGG
AAACTAGATAAGATCTGACAGAAAGAAAAACTACTTACTCAACCGGAACAACAAATTCGAAGAAC
CAATGAAAAATCCAAGCAGTATCGATGAATTCAGCCAGAATAATTAATCACATCAACAAAAGATA
CATAGAATAAACACGAATAAACACAAATGTTATATCCACACCTTATTTACGTGAATCTGATTC
Found at i:50482963 original size:27 final size:27
Alignment explanation
Indices: 50482933--50483110 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
50482923 ATATTGAGCC
* * *
50482933 CGCACACTCAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
50482960 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
50482987 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
50483015 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
50483042 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
50483069 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
50483096 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50483111 GTACAATTTA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:50483072 original size:82 final size:81
Alignment explanation
Indices: 50482959--50483109 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
50482949 TATAATCAGC
* *
50482959 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
50483024 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* **
50483041 TCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
50483105 AGTGC
65 AGTGC
50483110 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.27
82 46 0.73
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (81 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:50490332 original size:27 final size:27
Alignment explanation
Indices: 50490302--50490479 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
50490292 ATATTGAGCC
* * *
50490302 CGCACACTCAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
50490329 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
50490356 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
50490384 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
50490411 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
50490438 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
50490465 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50490480 GTACAATTTA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:50490441 original size:82 final size:81
Alignment explanation
Indices: 50490328--50490478 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
50490318 TATAATCAGC
* *
50490328 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
50490393 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* **
50490410 TCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
50490474 AGTGC
65 AGTGC
50490479 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.27
82 46 0.73
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (81 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:50501738 original size:50 final size:49
Alignment explanation
Indices: 50501663--50501898 Score: 268
Period size: 50 Copynumber: 4.9 Consensus size: 49
50501653 TGATGCTAGG
*
50501663 AAGATATGAGAGTTAGTGTAAGACCATGTTTGGGACATGGCATCGACCT
1 AAGATATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACCT
* *
50501712 CAAGATATGAGAGTTAGTGTAAGACCATGTCTAGGACATGGCATCG-GCT
1 -AAGATATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACCT
* * * * *
50501761 -TGATAT--GTGTCAGTGGAAGACCATGTCTGGGACATGGCATCGGCCT
1 AAGATATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACCT
*
50501807 -CGATATACGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CT
1 AAGATAT--GAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACCT
** * * * *
50501856 TTGATGTGTGAGTCAGTGTAAGACCATGTCTAGGACATGGCAT
1 AAGATATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCAT
50501899 TGGCACCTTA
Statistics
Matches: 161, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
45 32 0.20
46 7 0.04
47 5 0.03
48 33 0.20
49 4 0.02
50 80 0.50
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (49 bp):
AAGATATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACCT
Found at i:50501845 original size:95 final size:97
Alignment explanation
Indices: 50501677--50501898 Score: 331
Period size: 95 Copynumber: 2.3 Consensus size: 97
50501667 TATGAGAGTT
* *
50501677 AGTGTAAGACCATGTTTGGGACATGGCATCGACCTCAAGATATGAGAGTTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAAGATACGAGAGTTAGTGTAAGACCATGT
*
50501742 CTAGGACATGGCATCGGC-TTGATATGT-GTC
66 CTAGGACATGGCATCGACTTTGATATGTAGTC
* * * *
50501772 AGTGGAAGACCATGTCTGGGACATGGCATCGGCCTCGATATACGAGAGTTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAAGATACGAGAGTTAGTGTAAGACCATGT
* *
50501837 CTGGGACATGGCATCGACTTTGATGTGTGAGTC
66 CTAGGACATGGCATCGACTTTGATATGT-AGTC
*
50501870 AGTGTAAGACCATGTCTAGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
50501899 TGGCACCTTA
Statistics
Matches: 113, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
95 75 0.66
96 8 0.07
98 30 0.27
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAAGATACGAGAGTTAGTGTAAGACCATGT
CTAGGACATGGCATCGACTTTGATATGTAGTC
Found at i:50507440 original size:21 final size:20
Alignment explanation
Indices: 50507410--50507453 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
50507400 CCATACGGGT
*
50507410 TAATAAATAAAATAATAATAA
1 TAATAAATAAAATAAGAA-AA
* *
50507431 TAATATATAATATAAGAAAA
1 TAATAAATAAAATAAGAAAA
50507451 TAA
1 TAA
50507454 GCAATAAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
TAATAAATAAAATAAGAAAA
Found at i:50509280 original size:33 final size:36
Alignment explanation
Indices: 50509233--50509298 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 36
50509223 ATTCTGTAGT
*
50509233 TAGGGTAATACTG-AAACTGTAGAA-ACTGAGATAG
1 TAGGGTAAAACTGAAAACTGTAGAAGACTGAGATAG
*
50509267 TAGGG-AAAACTGAAAACTTTAGAAGACTGAGA
1 TAGGGTAAAACTGAAAACTGTAGAAGACTGAGA
50509299 CTGTAGCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 6 0.21
34 15 0.54
35 7 0.25
ACGTcount: A:0.44, C:0.09, G:0.26, T:0.21
Consensus pattern (36 bp):
TAGGGTAAAACTGAAAACTGTAGAAGACTGAGATAG
Found at i:50512042 original size:65 final size:65
Alignment explanation
Indices: 50511938--50512068 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
50511928 CCCCTAGGGT
*
50511938 TAAGGTTGACCTGAATGCATGTTTGAATGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGAATGTTACTATTTACTGAATGCCATGTTATTATTATCTGA
*
50512003 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGAATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGAATGTTACTATTTACTGAATGCCATGTTATTATTATCTGA
50512068 T
1 T
50512069 GCATGGGACT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGAATGTTACTATTTACTGAATGCCATGTTATTATTATCTGA
Found at i:50517758 original size:49 final size:49
Alignment explanation
Indices: 50517533--50517825 Score: 245
Period size: 47 Copynumber: 6.1 Consensus size: 49
50517523 CCATGGCAAC
* *
50517533 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAGAG
1 ATGTGATATGTGA-TTACGTATAAGACCATAGCTGGGCTATGGCATC---GAT
* * * * * *
50517586 ATGTGATTATTTGTTTCCGTATAAGACCATATCTGGGATATGGCATTG--
1 ATGTGA-TATGTGATTACGTATAAGACCATAGCTGGGCTATGGCATCGAT
* * * * *
50517634 GTGTGATATATG-CTACTGTATAAGACCATATCTGGGATATGGCATC-A-
1 ATGTGATATGTGATTAC-GTATAAGACCATAGCTGGGCTATGGCATCGAT
* * * * *
50517681 GTGAGATATGTGATTA-ATGTAAGACCATAGCCGGGCTATGGCATCGAT
1 ATGTGATATGTGATTACGTATAAGACCATAGCTGGGCTATGGCATCGAT
*
50517729 ATGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGAT
1 ATGTGATATGTGATTACGTATAAGACCATAGCTGGGCTATGGCATCGAT
*
50517778 ATGTGA-A--T-A-T--GTGTAAGACCATAGCTGGGCTATGGCATC-ATT
1 ATGTGATATGTGATTACGTATAAGACCATAGCTGGGCTATGGCATCGA-T
50517820 ATGTGA
1 ATGTGA
50517826 AGATGTGTAA
Statistics
Matches: 210, Mismatches: 22, Indels: 27
0.81 0.08 0.10
Matches are distributed among these distances:
41 1 0.00
42 36 0.17
44 1 0.00
45 1 0.00
46 27 0.13
47 44 0.21
48 22 0.10
49 36 0.17
50 1 0.00
53 36 0.17
54 5 0.02
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (49 bp):
ATGTGATATGTGATTACGTATAAGACCATAGCTGGGCTATGGCATCGAT
Found at i:50517792 original size:42 final size:42
Alignment explanation
Indices: 50517733--50517843 Score: 179
Period size: 42 Copynumber: 2.6 Consensus size: 42
50517723 ATCGATATGT
* *
50517733 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
50517775 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
*
50517817 -ATTATGTGAAGATGTGTAAGACCATAG
1 GA-TATGTGAATATGTGTAAGACCATAG
50517844 TTGAACTATG
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
41 1 0.02
42 64 0.98
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (42 bp):
GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:50517823 original size:91 final size:91
Alignment explanation
Indices: 50517607--50517825 Score: 232
Period size: 95 Copynumber: 2.4 Consensus size: 91
50517597 TGTTTCCGTA
* * ** *
50517607 TAAGACCATATCTGGGATATGGCAT--TGGTGTGATATATGCTACTGTATAAGACCATATCTGGG
1 TAAGACCATAGCTGGGCTATGGCATCATTATGTGATATATGCTACTGTATAAGACCATAGCTGGG
*
50517670 ATATGGCATCAGTGAGATATGTGATTAATG
66 ATATGGCATC----AGATATGTGAATAATG
* * * *
50517700 TAAGACCATAGCCGGGCTATGGCATCGA-TATGTGATATGTGATTAC-GTGTAAGACCATAGCTG
1 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGATATATG-CTACTGTATAAGACCATAGCTG
* *
50517763 GGCTATGGCATC-GATATGTGAATATGTG
64 GGATATGGCATCAGATATGTGAATA-ATG
50517791 TAAGACCATAGCTGGGCTATGGCATCATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCATTATGTGA
50517826 AGATGTGTAA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
90 12 0.11
91 34 0.32
93 22 0.21
95 36 0.34
96 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (91 bp):
TAAGACCATAGCTGGGCTATGGCATCATTATGTGATATATGCTACTGTATAAGACCATAGCTGGG
ATATGGCATCAGATATGTGAATAATG
Found at i:50523033 original size:46 final size:46
Alignment explanation
Indices: 50522966--50523141 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
50522956 TATTTGGGCA
*
50522966 TCCGAACTCGTTGAATTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
50523012 TCCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
* * *
50523057 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
50523105 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGG
50523142 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.05
45 1 0.01
46 61 0.55
47 28 0.25
48 1 0.01
50 4 0.04
51 5 0.05
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:50523121 original size:93 final size:93
Alignment explanation
Indices: 50522962--50523133 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
50522952 AGGATATTTG
* *
50522962 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
50523027 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
50523055 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
50523120 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
50523134 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:50524266 original size:27 final size:26
Alignment explanation
Indices: 50524218--50524269 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
50524208 GCGAGGCTGC
*
50524218 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
50524244 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
50524270 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50525276 original size:27 final size:27
Alignment explanation
Indices: 50524893--50525287 Score: 488
Period size: 27 Copynumber: 14.6 Consensus size: 27
50524883 GGGGCAAAAT
* * *
50524893 AGTAATTTTACCCCAC-GAGGGTATCTC
1 AGTAATTCTACCCTACAG-GGGTATTTC
*
50524920 GGTAATTCTACCCTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
50524947 AGTATTTCTACCCTACAAGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
50524974 GGTAATTCTACCCTATAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
50525001 AGTAATTCTACCATATAGGGGTATTT-
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
50525027 TGTTAATTCTACCTTACAGGGGTATTTC
1 AG-TAATTCTACCCTACAGGGGTATTTC
* *
50525055 AATAATTTTACCCTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
50525082 GGTAATTCTACCTTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* * *
50525109 GGTAATTCTACCTTACAGGGATATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
50525136 AGTAATTCTACCCTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
50525163 GGTAATTCTACCTTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
50525190 AGTAATTCTATCTTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
50525217 AGTAGTTCTACCCTACAGGGGTACTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* *
50525244 GGTAATTCTACCTTACAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* * *
50525271 AATAATGCTAGCCTACA
1 AGTAATTCTACCCTACA
50525288 AATATGTGAT
Statistics
Matches: 320, Mismatches: 45, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 318 0.99
28 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
AGTAATTCTACCCTACAGGGGTATTTC
Found at i:50529986 original size:53 final size:54
Alignment explanation
Indices: 50529902--50530097 Score: 171
Period size: 53 Copynumber: 3.6 Consensus size: 54
50529892 TCCTTTTTTA
* * ** * *
50529902 AACTTACCATTTCCATATCTTGACATTGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
50529955 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGAT-CTTAGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT-GCCTTATAG
** * * * * * * *
50530009 TAGTTTATCAATGCCATGTCTTGACATGGTCTTGCATGATCTCCTTACCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
50530064 AACTTACCAATGCCATGCCTTGGCATAGTCTTAC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTAC
50530098 CAATGCCATG
Statistics
Matches: 111, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
52 3 0.03
53 40 0.36
54 28 0.25
55 37 0.33
56 3 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:50530097 original size:27 final size:27
Alignment explanation
Indices: 50530066--50530123 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
50530056 CCTTGTAGAA
50530066 CTTACCAATGCCATGCCTTGGCATAGT
1 CTTACCAATGCCATGCCTTGGCATAGT
* *
50530093 CTTACCAATGCCATGCCTTGGTATGGT
1 CTTACCAATGCCATGCCTTGGCATAGT
50530120 CTTA
1 CTTA
50530124 TTTGGTATCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.33
Consensus pattern (27 bp):
CTTACCAATGCCATGCCTTGGCATAGT
Found at i:50534956 original size:12 final size:12
Alignment explanation
Indices: 50534941--50534966 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50534931 TCTATTCTCC
50534941 TCTCTCACTTTT
1 TCTCTCACTTTT
50534953 TCTCTCACTTTT
1 TCTCTCACTTTT
50534965 TC
1 TC
50534967 CATCCCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.35, G:0.00, T:0.58
Consensus pattern (12 bp):
TCTCTCACTTTT
Found at i:50548498 original size:36 final size:37
Alignment explanation
Indices: 50548426--50548503 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
50548416 TTATTACGAA
* *
50548426 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
* *
50548463 GTCTTACCTGGACA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
50548499 GTCTT
1 GTCTT
50548504 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 24 0.65
37 13 0.35
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
Found at i:50548699 original size:49 final size:48
Alignment explanation
Indices: 50548621--50548778 Score: 255
Period size: 49 Copynumber: 3.2 Consensus size: 48
50548611 GCCCTTCGGG
50548621 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
*
50548671 ACTTTCACATTCATCACATCGGCTATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
* *
50548720 ACTTTCACATTCATCACATAGGCCATTAGGCCTTATCACATATAT-AC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
50548767 ACTTTCACATTC
1 ACTTTCACATTC
50548779 TCAAAGTAAG
Statistics
Matches: 103, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
47 14 0.14
49 85 0.83
50 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.32
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
Found at i:50552299 original size:40 final size:40
Alignment explanation
Indices: 50552254--50552610 Score: 498
Period size: 40 Copynumber: 8.9 Consensus size: 40
50552244 CGAATACACG
* * * * *
50552254 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * ** * *
50552294 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
50552334 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
50552374 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
50552414 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCAGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
50552454 TTACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
50552494 TCGCTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
50552534 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
50552574 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
50552611 TTAGTAAATC
Statistics
Matches: 289, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 289 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:50552482 original size:120 final size:120
Alignment explanation
Indices: 50552269--50552689 Score: 524
Period size: 120 Copynumber: 3.5 Consensus size: 120
50552259 AGCATGATTA
* * * * * * ** * *
50552269 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
50552334 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
66 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
50552389 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCAGATACA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
50552454 TTACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATG
66 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
50552509 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* ** * * * *
50552574 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAAATCGCACCAATG
66 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* * ** *
50552630 C-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
50552690 CATCGTTCGA
Statistics
Matches: 262, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
120 239 0.91
121 18 0.07
122 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:50552635 original size:40 final size:40
Alignment explanation
Indices: 50552271--50552689 Score: 190
Period size: 40 Copynumber: 10.5 Consensus size: 40
50552261 CATGATTACT
* * **
50552271 CTTCGGGACCTAGCCCGGATATA-AC-ACCAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAAATAGCAC-AATGC
* ** * *
50552310 TCTTTGGGGTTTAGCACGGATATA-TC-ACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAAATAGCAC-AATGC
* * *
50552350 TCTTCGGAACTTAGCCCGGATACA-TC-ACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAAATAGCAC-AATGC
* * *
50552390 TCTTCGGAACTTAGCCCGGATACA-TC-ACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAAATAGCAC-AATGC
* * * * * *
50552430 TCTTCGGAACTTAGCCCAGATACA-T-TACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAAATAGCA-CAATGC
* ** *
50552470 TCTTCGGGACTTAGCCCGGATACA-TC-GCTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAAATAGCA-CAATGC
* * * *
50552510 TCTTCGGAACTTAGCCCGGATACA-TC-ACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAAATAGCA-CAATGC
* ** *
50552550 TCTTCGGGACTTAGCCCGGATACA-TC-GCTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAAATAGCA-CAATGC
* *
50552590 TCTTCGGGACTTAGCCCGGATTTAGT-AAATCGCACCAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCAAATAGCA-CAATGC
* * ** *
50552631 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAAATAGCACAATGC
50552671 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
50552690 CATCGTTCGA
Statistics
Matches: 334, Mismatches: 37, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.01
40 313 0.94
41 18 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCAAATAGCACAATGC
Found at i:50553034 original size:29 final size:29
Alignment explanation
Indices: 50552995--50553073 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
50552985 CTTAATAATC
*
50552995 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
50553025 AACTCGCACACTTAGTGTCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
50553054 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50553074 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:50553116 original size:43 final size:43
Alignment explanation
Indices: 50553055--50553200 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
50553045 TGCATTTCAA
50553055 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
50553098 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
50553141 GCTCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
50553184 GTCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
50553201 TGAAAACCAA
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:50555115 original size:37 final size:37
Alignment explanation
Indices: 50555065--50555143 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50555055 TTATTACGAA
* * *
50555065 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50555102 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50555139 GTCTT
1 GTCTT
50555144 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50555337 original size:49 final size:48
Alignment explanation
Indices: 50555260--50555417 Score: 264
Period size: 49 Copynumber: 3.2 Consensus size: 48
50555250 GCCCTTCGGG
50555260 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
50555310 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
* *
50555359 ACTTTCACATTCATCACATAGGCCATTAGGCCTTATCACATATAT-AC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
50555406 ACTTTCACATTC
1 ACTTTCACATTC
50555418 TCAAAGTAAG
Statistics
Matches: 105, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
47 14 0.13
49 87 0.83
50 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
Found at i:50555736 original size:24 final size:23
Alignment explanation
Indices: 50555688--50555745 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
50555678 TAATCAAACA
50555688 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
50555712 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
50555736 TTATT-TTATA
1 TTATTATTATA
50555746 CTTTCCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:50558072 original size:74 final size:74
Alignment explanation
Indices: 50557942--50558080 Score: 188
Period size: 74 Copynumber: 1.9 Consensus size: 74
50557932 AGCTCAGATG
* * *
50557942 AAATCTCCACACGAAGTTATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGAACAAAATCACCACACATAGTCATCGGGTCTT
50558007 ACCCGGACA
66 ACCCGGACA
* * * * * * *
50558016 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAGTCACCACATATGGTCATCTGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGAACAAAATCACCACACATAGTCATCGGGTCTT
50558081 TAATCCCAGG
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
74 55 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (74 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGAACAAAATCACCACACATAGTCATCGGGTCTT
ACCCGGACA
Found at i:50558073 original size:37 final size:37
Alignment explanation
Indices: 50557942--50558052 Score: 195
Period size: 37 Copynumber: 3.0 Consensus size: 37
50557932 AGCTCAGATG
* * *
50557942 AAATCTCCACACGAAGTTATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
50557979 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
50558016 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
50558053 TAGTCACCAC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:50558079 original size:37 final size:37
Alignment explanation
Indices: 50557942--50558080 Score: 154
Period size: 37 Copynumber: 3.8 Consensus size: 37
50557932 AGCTCAGATG
* * *
50557942 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGAACA
1 AAATCACCACAC-ATAGTCATCGGGTCTTACCCGGACA
* *
50557979 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
* *
50558016 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
* * * * *
50558053 TAGTCACCACATATGGTCATCTGGTCTT
1 AAATCACCACACATAGTCATCGGGTCTT
50558081 TAATCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
37 91 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:50558288 original size:46 final size:46
Alignment explanation
Indices: 50558235--50558371 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
50558225 TATATATACA
* * * *
50558235 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
50558281 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
50558327 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
50558372 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:50558406 original size:47 final size:47
Alignment explanation
Indices: 50558345--50558692 Score: 390
Period size: 47 Copynumber: 7.1 Consensus size: 47
50558335 ACACATTTCG
* * * **
50558345 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
50558392 CATTGGCCATTCGGCCTTATCTCACATACGCGTGTTCACATATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC----A------TT--CATC----A
* *
50558455 CATTGGCCATGCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
50558502 CATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
50558549 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
50558596 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * ** *
50558643 CATTGGCCATTCGGCCTTATCTCATATATACATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
50558690 CAT
1 CAT
50558693 AAAATCCTAA
Statistics
Matches: 263, Mismatches: 22, Indels: 32
0.83 0.07 0.10
Matches are distributed among these distances:
47 213 0.81
51 4 0.02
53 2 0.01
57 2 0.01
59 4 0.02
63 38 0.14
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:50558432 original size:14 final size:14
Alignment explanation
Indices: 50558413--50558448 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 14
50558403 CGGCCTTATC
50558413 TCACATACGCGTGT
1 TCACATACGCGTGT
50558427 TCACATATACGCGTGT
1 TCAC--ATACGCGTGT
50558443 TCACAT
1 TCACAT
50558449 TCATCACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 6 0.30
16 14 0.70
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.31
Consensus pattern (14 bp):
TCACATACGCGTGT
Found at i:50558438 original size:16 final size:16
Alignment explanation
Indices: 50558417--50558448 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
50558407 CTTATCTCAC
50558417 ATACGCGTGTTCACAT
1 ATACGCGTGTTCACAT
50558433 ATACGCGTGTTCACAT
1 ATACGCGTGTTCACAT
50558449 TCATCACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (16 bp):
ATACGCGTGTTCACAT
Found at i:50558464 original size:63 final size:63
Alignment explanation
Indices: 50558377--50558495 Score: 220
Period size: 63 Copynumber: 1.9 Consensus size: 63
50558367 CATATATACA
* *
50558377 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCACATACGCGTGTTCACATATACGCG
1 TGTTCACATTCATCACATTGGCCATGCGGCCTTATCACACATACGCGTGTTCACATATACGCG
50558440 TGTTCACATTCATCACATTGGCCATGCGGCCTTATCACACATACGCGTGTTCACAT
1 TGTTCACATTCATCACATTGGCCATGCGGCCTTATCACACATACGCGTGTTCACAT
50558496 TCATCACATT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (63 bp):
TGTTCACATTCATCACATTGGCCATGCGGCCTTATCACACATACGCGTGTTCACATATACGCG
Found at i:50558497 original size:94 final size:94
Alignment explanation
Indices: 50558427--50558692 Score: 442
Period size: 94 Copynumber: 2.8 Consensus size: 94
50558417 ATACGCGTGT
* *
50558427 TCACATATACGCGTGTTCACATTCATCACATTGGCCATGCGGCCTTATCACACATACGCGTGTTC
1 TCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGTGTTC
50558492 ACATTCATCACATTGGCCATTCAGCCTTA
66 ACATTCATCACATTGGCCATTCAGCCTTA
*
50558521 TCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGTGTTC
1 TCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGTGTTC
*
50558586 ACATTCATCACATTGGCCATTCGGCCTTA
66 ACATTCATCACATTGGCCATTCAGCCTTA
* * ** * *
50558615 TCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACATATTC
1 TCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGTGTTC
50558680 ACATTCATCACAT
66 ACATTCATCACAT
50558693 AAAATCCTAA
Statistics
Matches: 161, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 161 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (94 bp):
TCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGTGTTC
ACATTCATCACATTGGCCATTCAGCCTTA
Found at i:50558500 original size:110 final size:110
Alignment explanation
Indices: 50558345--50558542 Score: 306
Period size: 110 Copynumber: 1.8 Consensus size: 110
50558335 ACACATTTCG
* * * *
50558345 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATGCGGCCTTACCACACATACACATGTTCACATTCATCACATTGGCCATTCAGCCTT
* *
50558410 ATCTCACATACGCGTGTTCACATATACGCGTGTTCACATTCATCA
66 ATCACACATACGCATGTTCACATATACGCGTGTTCACATTCATCA
* * * *
50558455 CATTGGCCATGCGGCCTTATCACACATACGCGTGTTCACATTCATCACATTGGCCATTCAGCCTT
1 CATTAGCCATGCGGCCTTACCACACATACACATGTTCACATTCATCACATTGGCCATTCAGCCTT
50558520 ATCACACATACGCATGTTCACAT
66 ATCACACATACGCATGTTCACAT
50558543 TCATCACATT
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
110 78 1.00
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.30
Consensus pattern (110 bp):
CATTAGCCATGCGGCCTTACCACACATACACATGTTCACATTCATCACATTGGCCATTCAGCCTT
ATCACACATACGCATGTTCACATATACGCGTGTTCACATTCATCA
Found at i:50558502 original size:25 final size:24
Alignment explanation
Indices: 50558473--50558644 Score: 65
Period size: 23 Copynumber: 7.2 Consensus size: 24
50558463 ATGCGGCCTT
50558473 ATCACACATACGCGTGTTCACATTC
1 ATCACACATACGC-TGTTCACATTC
** ** *
50558498 AT--CACATTGGCCATTCAGCCTT-
1 ATCACACATACGCTGTTCA-CATTC
50558520 ATCACACATACGCATGTTCACATTC
1 ATCACACATACGC-TGTTCACATTC
** ** * *
50558545 AT--CACATTGGCCATTCGGCCTT-
1 ATCACACATACGCTGTTC-ACATTC
50558567 ATCACACATACGCGTGTTCACATTC
1 ATCACACATACGC-TGTTCACATTC
** ** * *
50558592 AT--CACATTGGCCATTCGGCCTT-
1 ATCACACATACGCTGTTC-ACATTC
50558614 ATCACACATACGCGTGTTCACATTC
1 ATCACACATACGC-TGTTCACATTC
50558639 ATCACA
1 ATCACA
50558645 TTGGCCATTC
Statistics
Matches: 98, Mismatches: 34, Indels: 30
0.60 0.21 0.19
Matches are distributed among these distances:
22 16 0.16
23 30 0.31
24 30 0.31
25 22 0.22
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (24 bp):
ATCACACATACGCTGTTCACATTC
Found at i:50558590 original size:141 final size:141
Alignment explanation
Indices: 50558427--50558692 Score: 460
Period size: 141 Copynumber: 1.9 Consensus size: 141
50558417 ATACGCGTGT
*
50558427 TCACATATACGCGTGTTCACATTCATCACATTGGCCATGCGGCCTTATCACACATACGCGTGTTC
1 TCACACATACGCGTGTTCACATTCATCACATTGGCCATGCGGCCTTATCACACATACGCGTGTTC
* *
50558492 ACATTCATCACATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCC
66 ACATTCATCACATTGGCCATTCAGCCTTATCACACATACACATATTCACATTCATCACATTGGCC
50558557 ATTCGGCCTTA
131 ATTCGGCCTTA
*
50558568 TCACACATACGCGTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGTGTTC
1 TCACACATACGCGTGTTCACATTCATCACATTGGCCATGCGGCCTTATCACACATACGCGTGTTC
* * * *
50558633 ACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACATATTCACATTCATCACAT
66 ACATTCATCACATTGGCCATTCAGCCTTATCACACATACACATATTCACATTCATCACAT
50558693 AAAATCCTAA
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
141 117 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (141 bp):
TCACACATACGCGTGTTCACATTCATCACATTGGCCATGCGGCCTTATCACACATACGCGTGTTC
ACATTCATCACATTGGCCATTCAGCCTTATCACACATACACATATTCACATTCATCACATTGGCC
ATTCGGCCTTA
Found at i:50569266 original size:37 final size:37
Alignment explanation
Indices: 50569205--50569283 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
50569195 TTATTACGAA
* * *
50569205 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
50569242 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
50569279 GTCTT
1 GTCTT
50569284 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:50569479 original size:47 final size:47
Alignment explanation
Indices: 50569401--50570100 Score: 1166
Period size: 47 Copynumber: 14.9 Consensus size: 47
50569391 CCCTTCGGGA
* * * * * * *
50569401 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50569448 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50569495 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50569542 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50569589 CTTATCACATATATACACTTTCACATTCATCACATCGGCAACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50569636 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50569683 CTTATCACACATATACACGTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50569730 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50569779 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50569826 CTTATCACACATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50569873 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50569920 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50569967 CTTATCACACATATACACTTTCACATTCATCACATCCGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50570014 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50570061 CTTATCACATATATACACTTTCACATTCATCACATCGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCC
50570101 TAATACACTT
Statistics
Matches: 618, Mismatches: 33, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 573 0.93
49 45 0.07
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50569655 original size:141 final size:141
Alignment explanation
Indices: 50569401--50570347 Score: 1525
Period size: 141 Copynumber: 6.8 Consensus size: 141
50569391 CCCTTCGGGA
* * * * * * * * *
50569401 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50569466 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
50569531 GGCCATTAGGC
131 GGCTATTAGGC
*
50569542 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
50569607 TTTCACATTCATCACATCGGCAACTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
50569672 GGCTATTAGGC
131 GGCTATTAGGC
* *
50569683 CTTATCACACATATACACGTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
50569748 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
50569813 TCGGCTATTAGGC
129 TCGGCTATTAGGC
* *
50569826 CTTATCACACATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50569891 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
50569956 GGCTATTAGGC
131 GGCTATTAGGC
* * * *
50569967 CTTATCACACATATACACTTTCACATTCATCACATCCGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50570032 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
50570097 GGCCTA--A---
131 GG-CTATTAGGC
*
50570104 --TA-CAC-T-T-T-CA----CA-T-TCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50570156 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
50570221 GGCTATTAGGC
131 GGCTATTAGGC
50570232 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
50570297 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
50570348 TTGGCTGAAT
Statistics
Matches: 753, Mismatches: 32, Indels: 42
0.91 0.04 0.05
Matches are distributed among these distances:
123 3 0.00
124 103 0.14
125 1 0.00
126 2 0.00
130 4 0.01
131 4 0.01
132 2 0.00
133 1 0.00
134 4 0.01
135 4 0.01
139 2 0.00
140 1 0.00
141 483 0.64
142 3 0.00
143 136 0.18
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCTATTAGGC
Found at i:50570109 original size:30 final size:30
Alignment explanation
Indices: 50570073--50570130 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
50570063 TATCACATAT
50570073 ATACACTTTCACATTCATCACATCGGCCTA
1 ATACACTTTCACATTCATCACATCGGCCTA
50570103 ATACACTTTCACATTCATCACATCGGCC
1 ATACACTTTCACATTCATCACATCGGCC
50570131 ATTAGGCCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.34, G:0.07, T:0.29
Consensus pattern (30 bp):
ATACACTTTCACATTCATCACATCGGCCTA
Found at i:50570114 original size:77 final size:77
Alignment explanation
Indices: 50570026--50570177 Score: 304
Period size: 77 Copynumber: 2.0 Consensus size: 77
50570016 TATCACACAT
50570026 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
50570091 CACATCGGCCTA
66 CACATCGGCCTA
50570103 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
50570168 CACATCGGCC
66 CACATCGGCC
50570178 ATTAGGCCTT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.31
Consensus pattern (77 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
CACATCGGCCTA
Found at i:50570156 original size:47 final size:47
Alignment explanation
Indices: 50570103--50570347 Score: 472
Period size: 47 Copynumber: 5.2 Consensus size: 47
50570093 CATCGGCCTA
50570103 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
50570150 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
50570197 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
50570244 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
50570291 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
50570338 ATATACTTTC
1 ATACACTTTC
50570348 TTGGCTGAAT
Statistics
Matches: 195, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 195 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:50573449 original size:49 final size:48
Alignment explanation
Indices: 50573376--50573595 Score: 197
Period size: 49 Copynumber: 4.4 Consensus size: 48
50573366 AAGCTATCTG
* * ** *
50573376 GTACACATAGTAGCTTGCGTTTAGTACTACACATGCGACCAATTATCC
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCC
*** ** *
50573424 AGTACACGTAGTAGCCTGCACTTAGTACTACACACATTACCTAACCATCT
1 -GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCC
* * * * *
50573474 GATACACGTAGTAGCCTTCACTTAGTACTATACACGTGATCAAAGTTATCGG
1 G-TACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATC-C
* * * *
50573526 GTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCC
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCC
50573574 GTTACACGTAGTAGCCTGCACT
1 G-TACACGTAGTAGCCTGCACT
50573596 GTAACACCCC
Statistics
Matches: 135, Mismatches: 30, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
48 1 0.01
49 55 0.41
50 43 0.32
51 35 0.26
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (48 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCC
Found at i:50574995 original size:37 final size:37
Alignment explanation
Indices: 50574945--50575023 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50574935 TTATTACGAA
* * *
50574945 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50574982 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50575019 GTCTT
1 GTCTT
50575024 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50575354 original size:47 final size:47
Alignment explanation
Indices: 50575141--50575696 Score: 959
Period size: 47 Copynumber: 11.7 Consensus size: 47
50575131 GCCCTTCGGG
* *
50575141 ACTTATCACATTCATCACATCGGCAATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
50575191 ACTTTCACATTCATCACATCGACCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
50575240 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
50575289 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50575336 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50575383 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50575430 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50575477 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50575524 ACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50575571 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50575618 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50575665 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
50575697 ATACTATCAT
Statistics
Matches: 492, Mismatches: 14, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
47 359 0.73
49 129 0.26
50 4 0.01
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:50575398 original size:25 final size:25
Alignment explanation
Indices: 50575370--50575448 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
50575360 ATTAGGCCTT
50575370 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
50575395 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
50575417 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*
50575442 ACCACAT
1 ATCACAT
50575449 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 15, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:50575492 original size:25 final size:25
Alignment explanation
Indices: 50575464--50575542 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
50575454 ATTAGGCCTT
50575464 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
50575489 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
50575511 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
50575536 ATCACAT
1 ATCACAT
50575543 CAGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:50579131 original size:40 final size:40
Alignment explanation
Indices: 50579101--50579401 Score: 331
Period size: 40 Copynumber: 7.5 Consensus size: 40
50579091 AGCATGATTA
* * *
50579101 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* ** *
50579141 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
50579181 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
50579221 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
50579261 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * * * *
50579301 CTCTTCGAGACTTAGCTCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATG
* * *
50579342 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATG
50579382 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
50579402 CATCATTCGA
Statistics
Matches: 218, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.01
40 196 0.90
41 20 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:50579746 original size:29 final size:29
Alignment explanation
Indices: 50579707--50579785 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
50579697 CTTAATAATC
*
50579707 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
50579737 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
50579766 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50579786 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:50579832 original size:43 final size:43
Alignment explanation
Indices: 50579771--50579912 Score: 266
Period size: 43 Copynumber: 3.3 Consensus size: 43
50579761 TTTCAAGCCC
50579771 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCT
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCT
50579814 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCT
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCT
* *
50579857 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTCTTGCCC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCT
50579900 GCACACTTAGTGC
1 GCACACTTAGTGC
50579913 TGAAAACCAA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.25
Consensus pattern (43 bp):
GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCT
Found at i:50581827 original size:37 final size:37
Alignment explanation
Indices: 50581777--50581855 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50581767 TTATTACGAA
* * *
50581777 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50581814 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50581851 GTCTT
1 GTCTT
50581856 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50582050 original size:49 final size:48
Alignment explanation
Indices: 50581973--50582130 Score: 264
Period size: 49 Copynumber: 3.2 Consensus size: 48
50581963 GCCCTTCGGG
50581973 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
50582023 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
* *
50582072 ACTTTCACATTCATCACATAGGCCATTAGGCCTTATCACATATAT-AC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
50582119 ACTTTCACATTC
1 ACTTTCACATTC
50582131 TCAAAGTAAG
Statistics
Matches: 105, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
47 14 0.13
49 87 0.83
50 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
Found at i:50582449 original size:24 final size:23
Alignment explanation
Indices: 50582401--50582458 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
50582391 TAATCAAACA
50582401 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
50582425 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
50582449 TTATT-TTATA
1 TTATTATTATA
50582459 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:50584783 original size:74 final size:74
Alignment explanation
Indices: 50584653--50584791 Score: 188
Period size: 74 Copynumber: 1.9 Consensus size: 74
50584643 AGCTCAGATG
* * *
50584653 AAATCTCCACACGAAGTTATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGAACAAAATCACCACACATAGTCATCGGGTCTT
50584718 ACCCGGACA
66 ACCCGGACA
* * * * * * *
50584727 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAGTCACCACATATGGTCATCTGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGAACAAAATCACCACACATAGTCATCGGGTCTT
50584792 TAATCCCAGG
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
74 55 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (74 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGAACAAAATCACCACACATAGTCATCGGGTCTT
ACCCGGACA
Found at i:50584784 original size:37 final size:37
Alignment explanation
Indices: 50584653--50584763 Score: 195
Period size: 37 Copynumber: 3.0 Consensus size: 37
50584643 AGCTCAGATG
* * *
50584653 AAATCTCCACACGAAGTTATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
50584690 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
50584727 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
50584764 TAGTCACCAC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:50584790 original size:37 final size:37
Alignment explanation
Indices: 50584653--50584791 Score: 154
Period size: 37 Copynumber: 3.8 Consensus size: 37
50584643 AGCTCAGATG
* * *
50584653 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGAACA
1 AAATCACCACAC-ATAGTCATCGGGTCTTACCCGGACA
* *
50584690 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
* *
50584727 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
* * * * *
50584764 TAGTCACCACATATGGTCATCTGGTCTT
1 AAATCACCACACATAGTCATCGGGTCTT
50584792 TAATCCCAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
37 91 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:50584999 original size:46 final size:46
Alignment explanation
Indices: 50584946--50585082 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
50584936 TATATATACA
* * * *
50584946 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
50584992 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
50585038 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
50585083 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Done.