Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 1 of 295
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 1--8378 Score: 12395
Period size: 7 Copynumber: 1201.7 Consensus size: 7
1 CCCTAAA
1 CCCTAAA
8 CCCTAAA
1 CCCTAAA
15 CCCTAAA
1 CCCTAAA
22 CCCTAAA
1 CCCTAAA
29 CCCTAAA
1 CCCTAAA
36 CCCTAAA
1 CCCTAAA
43 CCCTAAA
1 CCCTAAA
50 CCCTAAA
1 CCCTAAA
57 CCCTAAA
1 CCCTAAA
64 CCCTAAA
1 CCCTAAA
71 CCCTAAA
1 CCCTAAA
78 CCCTAAA
1 CCCTAAA
85 CCCTAAA
1 CCCTAAA
92 CCCTAAA
1 CCCTAAA
99 CCCTAAA
1 CCCTAAA
106 CCCTAAA
1 CCCTAAA
113 CCCTAAA
1 CCCTAAA
120 CCCTAAA
1 CCCTAAA
127 CCCTAAA
1 CCCTAAA
134 CCCTAAA
1 CCCTAAA
141 CCCTAAA
1 CCCTAAA
148 CCCTAAA
1 CCCTAAA
155 CCCTAAA
1 CCCTAAA
162 CCCTAAA
1 CCCTAAA
169 CCCTAAA
1 CCCTAAA
176 CCCTAAA
1 CCCTAAA
183 CCCTAAA
1 CCCTAAA
190 CCCT-AA
1 CCCTAAA
196 CCCTAAA
1 CCCTAAA
203 CCCTAAA
1 CCCTAAA
210 CCCTAAA
1 CCCTAAA
217 CCCTAAA
1 CCCTAAA
224 CCCTAAA
1 CCCTAAA
231 CCCTAAA
1 CCCTAAA
238 CCCTAAA
1 CCCTAAA
245 CCCTAAA
1 CCCTAAA
252 CCCTAAA
1 CCCTAAA
259 CCCTAAA
1 CCCTAAA
266 CCCTAAA
1 CCCTAAA
273 CCCTAAA
1 CCCTAAA
280 --C-AAA
1 CCCTAAA
284 CCCTAAA
1 CCCTAAA
291 CCCTAAA
1 CCCTAAA
298 CCCTAAA
1 CCCTAAA
305 CCCTAAA
1 CCCTAAA
312 CCCTAAA
1 CCCTAAA
319 CCCTAAA
1 CCCTAAA
326 CCCTAAA
1 CCCTAAA
333 CCCTAAA
1 CCCTAAA
340 CCCTAAA
1 CCCTAAA
347 CCCTAAAA
1 CCCT-AAA
355 CCCTAAA
1 CCCTAAA
362 CCCTAAA
1 CCCTAAA
369 CCCTAAA
1 CCCTAAA
376 CCCTAAA
1 CCCTAAA
383 CCCTAAA
1 CCCTAAA
390 CCCTAAA
1 CCCTAAA
397 CCCTAAA
1 CCCTAAA
404 CCCTAAA
1 CCCTAAA
411 CCCTAAA
1 CCCTAAA
418 CCCCTAAA
1 -CCCTAAA
426 CCCTAAA
1 CCCTAAA
433 CCCTAAA
1 CCCTAAA
440 CCCTAAA
1 CCCTAAA
447 CCCTAAA
1 CCCTAAA
454 CCCTAAA
1 CCCTAAA
461 CCCTAAA
1 CCCTAAA
468 CCCTAAA
1 CCCTAAA
475 CCCTAAA
1 CCCTAAA
482 CCCTAAA
1 CCCTAAA
489 CCCTAAAA
1 CCCT-AAA
497 CCCTAAA
1 CCCTAAA
504 CCCTAAA
1 CCCTAAA
511 CCCTAAA
1 CCCTAAA
518 CCCTAAA
1 CCCTAAA
525 CCCTAAAA
1 CCCT-AAA
533 CCCTAAA
1 CCCTAAA
540 CCCTAAA
1 CCCTAAA
547 CCCTAAA
1 CCCTAAA
554 CCCTAAA
1 CCCTAAA
561 CCCTAAA
1 CCCTAAA
568 CCCTAAA
1 CCCTAAA
575 CCCTAAA
1 CCCTAAA
582 CCCTAAA
1 CCCTAAA
589 CCCTAAA
1 CCCTAAA
596 CCCTAAA
1 CCCTAAA
603 CCCTAAA
1 CCCTAAA
610 CCCTAAA
1 CCCTAAA
617 CCCTAAA
1 CCCTAAA
624 CCCTAAA
1 CCCTAAA
631 CCCTAAA
1 CCCTAAA
638 CCCTAAA
1 CCCTAAA
645 CCCTAAA
1 CCCTAAA
652 CCCTAAA
1 CCCTAAA
659 CCCTAAA
1 CCCTAAA
666 CCCTAAA
1 CCCTAAA
673 CCCTAAA
1 CCCTAAA
680 CCCTAAA
1 CCCTAAA
687 CCCTAAA
1 CCCTAAA
694 CCCTAAA
1 CCCTAAA
701 CCCTAAA
1 CCCTAAA
708 CCCTAAA
1 CCCTAAA
715 CCCTAAA
1 CCCTAAA
722 CCCTAAA
1 CCCTAAA
729 CCCTAAA
1 CCCTAAA
736 CCCTAAA
1 CCCTAAA
743 CCCTAAA
1 CCCTAAA
750 CCCTAAA
1 CCCTAAA
757 CCCTAAA
1 CCCTAAA
764 CCCTAAA
1 CCCTAAA
771 CCCTAAA
1 CCCTAAA
778 CCCTAAA
1 CCCTAAA
785 CCCTAAA
1 CCCTAAA
792 CCCTAAA
1 CCCTAAA
799 CCCTAAA
1 CCCTAAA
806 CCCTAAA
1 CCCTAAA
813 CCCTAAA
1 CCCTAAA
820 CCCTAAA
1 CCCTAAA
827 CCCTAAA
1 CCCTAAA
834 CCCTAAA
1 CCCTAAA
841 CCCTAAA
1 CCCTAAA
848 CCCTAAA
1 CCCTAAA
855 CCCTAAA
1 CCCTAAA
862 CCCTAAA
1 CCCTAAA
869 CCCTAAA
1 CCCTAAA
876 CCCTAAA
1 CCCTAAA
883 CCCTAAA
1 CCCTAAA
890 CCCTAAA
1 CCCTAAA
897 CCCTAAA
1 CCCTAAA
904 CCCTAAA
1 CCCTAAA
911 CCCTAAA
1 CCCTAAA
918 CCCTAAA
1 CCCTAAA
925 CCCTAAA
1 CCCTAAA
932 CCCTAAA
1 CCCTAAA
939 CCCTAAA
1 CCCTAAA
946 CCCTAAA
1 CCCTAAA
953 CCCTAAA
1 CCCTAAA
960 CCCT--A
1 CCCTAAA
965 CCCTAAA
1 CCCTAAA
972 CCCTAAA
1 CCCTAAA
979 CCCTAAA
1 CCCTAAA
986 CCCTAAA
1 CCCTAAA
993 CCCTAAA
1 CCCTAAA
1000 CCCTAAA
1 CCCTAAA
1007 CCCTAAA
1 CCCTAAA
1014 CCCTAAA
1 CCCTAAA
1021 CCCTAAA
1 CCCTAAA
1028 CCCTAAA
1 CCCTAAA
1035 CCCTAAA
1 CCCTAAA
1042 CCCTAAA
1 CCCTAAA
1049 CCCTAAA
1 CCCTAAA
1056 CCCTAAA
1 CCCTAAA
1063 CCCTAAA
1 CCCTAAA
1070 CCCTAAA
1 CCCTAAA
1077 CCCTAAA
1 CCCTAAA
1084 CCCTAAA
1 CCCTAAA
1091 CCCTAAA
1 CCCTAAA
1098 CCCTAAAA
1 CCCT-AAA
1106 CCCTAAA
1 CCCTAAA
1113 CCCTAAA
1 CCCTAAA
1120 CCCTAAA
1 CCCTAAA
1127 CCCTAAA
1 CCCTAAA
1134 CCCTAAA
1 CCCTAAA
1141 CCCTAAA
1 CCCTAAA
1148 CCCTAAA
1 CCCTAAA
1155 CCCTAAA
1 CCCTAAA
1162 CCCTAAA
1 CCCTAAA
1169 CCCTAAA
1 CCCTAAA
1176 CCCTAAA
1 CCCTAAA
1183 CCCTAAA
1 CCCTAAA
1190 CCCTAAA
1 CCCTAAA
1197 CCCTAAA
1 CCCTAAA
1204 CCCTAAAA
1 CCCT-AAA
1212 CCCTAAA
1 CCCTAAA
1219 CCCTAAA
1 CCCTAAA
1226 CCCTAAA
1 CCCTAAA
1233 CCCTAAA
1 CCCTAAA
1240 CCCTAAA
1 CCCTAAA
1247 CCCTAAA
1 CCCTAAA
1254 CCCTAAA
1 CCCTAAA
1261 CCCTAAA
1 CCCTAAA
1268 CCCTAAAA
1 CCCT-AAA
1276 CCCTAAA
1 CCCTAAA
1283 CCCTAAA
1 CCCTAAA
1290 -CCT-AA
1 CCCTAAA
1295 CCCTAAA
1 CCCTAAA
1302 CCCTAAA
1 CCCTAAA
1309 CCCTAAAA
1 CCCT-AAA
1317 CCCTAAA
1 CCCTAAA
1324 CCCTAAA
1 CCCTAAA
1331 CCCTAAA
1 CCCTAAA
1338 CCCTAAA
1 CCCTAAA
1345 CCCTAAA
1 CCCTAAA
1352 CCCTAAA
1 CCCTAAA
1359 CCCTAAA
1 CCCTAAA
1366 CCCTAAA
1 CCCTAAA
1373 CCCTAAA
1 CCCTAAA
1380 CCCTAAA
1 CCCTAAA
1387 CCCTAAA
1 CCCTAAA
1394 CCCTAAA
1 CCCTAAA
1401 CCCTAAA
1 CCCTAAA
1408 CCCTAAA
1 CCCTAAA
1415 CCCTAAA
1 CCCTAAA
1422 CCCTAAA
1 CCCTAAA
1429 CCCTAAA
1 CCCTAAA
1436 CCCTAAA
1 CCCTAAA
1443 CCCTAAA
1 CCCTAAA
1450 CCCTAAA
1 CCCTAAA
1457 CCCTAAA
1 CCCTAAA
1464 CCCTAAA
1 CCCTAAA
1471 CCCTAAA
1 CCCTAAA
*
1478 CCTACCAAA
1 CC--CTAAA
1487 CCCTAAA
1 CCCTAAA
1494 -CC-AAA
1 CCCTAAA
1499 CCCTAAA
1 CCCTAAA
1506 -CCTAAA
1 CCCTAAA
1512 CCCTAAA
1 CCCTAAA
1519 CCCTAAAAA
1 CCCT--AAA
1528 CCCTAAA
1 CCCTAAA
1535 CCCCT-AA
1 -CCCTAAA
1542 CCCTAAA
1 CCCTAAA
1549 -CCTAAA
1 CCCTAAA
1555 CCCTAAA
1 CCCTAAA
1562 CCCTAAAA
1 CCCT-AAA
1570 CCCTAAA
1 CCCTAAA
1577 CCCT-AA
1 CCCTAAA
1583 CCCTAAA
1 CCCTAAA
1590 CCCTAAA
1 CCCTAAA
1597 CCCTAAA
1 CCCTAAA
1604 CCCTAAA
1 CCCTAAA
1611 CCCTAAA
1 CCCTAAA
1618 CCCTAAA
1 CCCTAAA
1625 CCCT-AA
1 CCCTAAA
1631 -CCTAAA
1 CCCTAAA
1637 -CCTAAA
1 CCCTAAA
1643 -CCTAAA
1 CCCTAAA
1649 CCCTAAA
1 CCCTAAA
1656 -CCTAAA
1 CCCTAAA
1662 -CCTAAAA
1 CCCT-AAA
1669 CCCTAAA
1 CCCTAAA
1676 CCCTAAAAA
1 CCCT--AAA
1685 CCCTAAA
1 CCCTAAA
1692 CCCTAAA
1 CCCTAAA
1699 CCCTAAA
1 CCCTAAA
1706 CCCTAAA
1 CCCTAAA
1713 -CCTAAA
1 CCCTAAA
1719 CCC-AAA
1 CCCTAAA
1725 CCCTAAA
1 CCCTAAA
1732 -CCTAAA
1 CCCTAAA
1738 CCCTAAAA
1 CCCT-AAA
1746 CCCTAAAA
1 CCCT-AAA
1754 CCCTAAA
1 CCCTAAA
1761 CCCTAAA
1 CCCTAAA
1768 CCCTAAA
1 CCCTAAA
1775 CCCTAAA
1 CCCTAAA
*
1782 ACCTAAA
1 CCCTAAA
1789 CCCTAAA
1 CCCTAAA
1796 CCCTAAA
1 CCCTAAA
1803 -CCTAAA
1 CCCTAAA
1809 CCCTAAA
1 CCCTAAA
1816 CCCTAAA
1 CCCTAAA
1823 CCCTAAAAA
1 CCCT--AAA
1832 CCCTAAA
1 CCCTAAA
*
1839 ACCTAAA
1 CCCTAAA
1846 CCCTAAA
1 CCCTAAA
1853 CCCTAAA
1 CCCTAAA
1860 -CCTAAA
1 CCCTAAA
*
1866 ACCTAAA
1 CCCTAAA
1873 CCCTAAAAAA
1 CCCT---AAA
1883 CCC-AAA
1 CCCTAAA
1889 CCC-AAA
1 CCCTAAA
1895 CCCTAAA
1 CCCTAAA
1902 CCCTAAA
1 CCCTAAA
1909 CCCTAAAA
1 CCCT-AAA
1917 CCCTAAA
1 CCCTAAA
1924 CCCTAAA
1 CCCTAAA
*
1931 ---AAAA
1 CCCTAAA
1935 CCACTAAA
1 CC-CTAAA
1943 CCCTAAA
1 CCCTAAA
1950 CCCTAAA
1 CCCTAAA
1957 CCCT-AA
1 CCCTAAA
1963 CCCTAAA
1 CCCTAAA
1970 CCCTAAA
1 CCCTAAA
1977 CCCTAAA
1 CCCTAAA
1984 CCCTAAA
1 CCCTAAA
1991 CCC--AA
1 CCCTAAA
1996 CCCTAAA
1 CCCTAAA
2003 CCCTAAA
1 CCCTAAA
2010 CCCTAAA
1 CCCTAAA
2017 -CCTAAAA
1 CCCT-AAA
2024 CCCTAAA
1 CCCTAAA
2031 CCCT-AA
1 CCCTAAA
2037 CCCT-AA
1 CCCTAAA
2043 CCCTAAA
1 CCCTAAA
2050 CCCTAAA
1 CCCTAAA
2057 CCCTAAA
1 CCCTAAA
2064 CCCTAAA
1 CCCTAAA
2071 CCCT-AA
1 CCCTAAA
2077 CCCTAAA
1 CCCTAAA
2084 CCCTAAA
1 CCCTAAA
2091 -CCTAAA
1 CCCTAAA
2097 CCCT-AA
1 CCCTAAA
2103 CCCT-AA
1 CCCTAAA
2109 CCCT-AA
1 CCCTAAA
2115 CCCT-AA
1 CCCTAAA
2121 CCCTAAA
1 CCCTAAA
2128 CCCTAAACA
1 CCCT-AA-A
2137 CCCTAAA
1 CCCTAAA
2144 CCCTAAA
1 CCCTAAA
2151 CCCTAAA
1 CCCTAAA
2158 CCCTAAA
1 CCCTAAA
2165 CCCTAAA
1 CCCTAAA
2172 CCCTAAA
1 CCCTAAA
2179 CCCCTAAA
1 -CCCTAAA
2187 CCCTAAAA
1 CCCT-AAA
2195 CCCTAAA
1 CCCTAAA
2202 CCCTAAA
1 CCCTAAA
2209 CCCTAAA
1 CCCTAAA
2216 CCCTAAA
1 CCCTAAA
2223 CCCTAAA
1 CCCTAAA
2230 CCCCT-AA
1 -CCCTAAA
2237 CCCTAAA
1 CCCTAAA
2244 CCCTAAA
1 CCCTAAA
2251 CCCTAAA
1 CCCTAAA
2258 CCCTAAA
1 CCCTAAA
2265 CCCTAAA
1 CCCTAAA
2272 CCCTAAA
1 CCCTAAA
2279 CCCTAAA
1 CCCTAAA
2286 -CCTAAA
1 CCCTAAA
2292 CCCTAAA
1 CCCTAAA
2299 CCCTAAA
1 CCCTAAA
2306 CCCCCTAAA
1 --CCCTAAA
2315 CCCTAAA
1 CCCTAAA
2322 CCCTAAA
1 CCCTAAA
2329 CCCTAAA
1 CCCTAAA
2336 CCCTAAA
1 CCCTAAA
2343 CCCTAAAA
1 CCCT-AAA
2351 CCCCT-AA
1 -CCCTAAA
2358 CCCTAAA
1 CCCTAAA
2365 CCCTAAA
1 CCCTAAA
2372 CCCTAAA
1 CCCTAAA
2379 CCCTAAA
1 CCCTAAA
2386 CCCTAAA
1 CCCTAAA
2393 CCCTAAA
1 CCCTAAA
2400 CCCT-AA
1 CCCTAAA
2406 CCCTAAA
1 CCCTAAA
2413 CCC-AAA
1 CCCTAAA
2419 CCCT-AA
1 CCCTAAA
2425 CCCT-AA
1 CCCTAAA
2431 CCCTAAA
1 CCCTAAA
2438 CCCT-AA
1 CCCTAAA
2444 CCCTAAA
1 CCCTAAA
2451 CCCTAAAAA
1 CCCT--AAA
2460 CCCTAAA
1 CCCTAAA
2467 CCCTAAA
1 CCCTAAA
2474 CCCTAAA
1 CCCTAAA
2481 CCCT-AA
1 CCCTAAA
2487 CCCTAAA
1 CCCTAAA
2494 CCCTAAA
1 CCCTAAA
2501 CCCTAAA
1 CCCTAAA
2508 CCCT-AA
1 CCCTAAA
2514 CCCTAAA
1 CCCTAAA
2521 CCCT-AA
1 CCCTAAA
2527 CCCT-AA
1 CCCTAAA
2533 CCCTAAA
1 CCCTAAA
2540 CCCCTAAA
1 -CCCTAAA
2548 CCCTAAA
1 CCCTAAA
2555 CCCTAAA
1 CCCTAAA
2562 -CCTAAAA
1 CCCT-AAA
2569 CCCT-AA
1 CCCTAAA
2575 CCCTAAA
1 CCCTAAA
*
2582 CCCCAAA
1 CCCTAAA
2589 CCCTAAA
1 CCCTAAA
2596 CCCT-AA
1 CCCTAAA
2602 CCCTAAA
1 CCCTAAA
2609 CCCT-AA
1 CCCTAAA
2615 CCCTAAA
1 CCCTAAA
2622 CCCT-AA
1 CCCTAAA
2628 CCCTAAA
1 CCCTAAA
2635 CCCTAAA
1 CCCTAAA
2642 CCCT--A
1 CCCTAAA
2647 CCCTAAA
1 CCCTAAA
2654 CCCCTAAA
1 -CCCTAAA
2662 CCCT--A
1 CCCTAAA
2667 CCCTAAA
1 CCCTAAA
2674 CCCTAAA
1 CCCTAAA
*
2681 CCCTCCCAA
1 CCCT--AAA
2690 CCCTAAA
1 CCCTAAA
2697 -CCTAAA
1 CCCTAAA
2703 CCCTAAA
1 CCCTAAA
2710 CCCTAAAA
1 CCCT-AAA
2718 CCCTAAA
1 CCCTAAA
2725 CCCTAAA
1 CCCTAAA
2732 CCCT-AA
1 CCCTAAA
2738 CCCTAAA
1 CCCTAAA
2745 CCCTAAA
1 CCCTAAA
2752 CCCTAAA
1 CCCTAAA
2759 -CCTAAA
1 CCCTAAA
2765 CCCTAAA
1 CCCTAAA
2772 CCCTAAA
1 CCCTAAA
2779 CCCTAAA
1 CCCTAAA
2786 CCCTAAA
1 CCCTAAA
2793 CCCTAAA
1 CCCTAAA
2800 CCCTAAA
1 CCCTAAA
2807 CCCTAAA
1 CCCTAAA
2814 CCCTAAA
1 CCCTAAA
2821 CCCTAAA
1 CCCTAAA
2828 CCCTAAA
1 CCCTAAA
2835 CCCTAAA
1 CCCTAAA
2842 CCCCCTAAA
1 --CCCTAAA
2851 CCCTAAA
1 CCCTAAA
2858 CCCTAAAA
1 CCCT-AAA
2866 CCCTAAA
1 CCCTAAA
2873 CCCTAAA
1 CCCTAAA
2880 CCCTAAA
1 CCCTAAA
2887 CCCTAAA
1 CCCTAAA
2894 CCCTAAA
1 CCCTAAA
2901 CCCTAAA
1 CCCTAAA
2908 CCCT---
1 CCCTAAA
2912 CCCTAAA
1 CCCTAAA
2919 CCCTAAAA
1 CCCT-AAA
2927 CCCTAAA
1 CCCTAAA
2934 CCCTAAA
1 CCCTAAA
2941 CCCTAAAA
1 CCCT-AAA
2949 CCCTAAA
1 CCCTAAA
2956 CCCTAAA
1 CCCTAAA
2963 CCCTAAA
1 CCCTAAA
2970 CCCT-AA
1 CCCTAAA
2976 CCCTAAA
1 CCCTAAA
2983 -CCTAAA
1 CCCTAAA
*
2989 ACC-AAA
1 CCCTAAA
2995 --CTAAA
1 CCCTAAA
3000 -CC-AAA
1 CCCTAAA
3005 -CCTAAA
1 CCCTAAA
3011 CCCCTAAA
1 -CCCTAAA
3019 CCCTAAA
1 CCCTAAA
3026 CCCTAAA
1 CCCTAAA
3033 CCCTAAA
1 CCCTAAA
3040 CCCTAAA
1 CCCTAAA
3047 CCCTAAA
1 CCCTAAA
3054 CCCTAAA
1 CCCTAAA
3061 CCCTAAA
1 CCCTAAA
3068 CCCCTAAA
1 -CCCTAAA
3076 -CC-AAA
1 CCCTAAA
*
3081 ACCTAAA
1 CCCTAAA
3088 CCCTAAA
1 CCCTAAA
3095 CCCTAAAA
1 CCCT-AAA
3103 CCCTAAA
1 CCCTAAA
3110 CCCTAAA
1 CCCTAAA
3117 CCCTAAA
1 CCCTAAA
3124 CCCTAAA
1 CCCTAAA
3131 CCC-AAA
1 CCCTAAA
3137 --CTAAA
1 CCCTAAA
3142 -CCTAAA
1 CCCTAAA
3148 CCCTAAAAA
1 CCCT--AAA
3157 CCCTAAAA
1 CCCT-AAA
3165 CCCTAAAA
1 CCCT-AAA
3173 CCCTAAAA
1 CCCT-AAA
****
3181 AAAAAAA
1 CCCTAAA
****
3188 AAAAAAA
1 CCCTAAA
3195 CCCTAAA
1 CCCTAAA
3202 CCCTAAA
1 CCCTAAA
3209 CCCTAAA
1 CCCTAAA
3216 CCCTAAA
1 CCCTAAA
3223 CCC-AAA
1 CCCTAAA
3229 -CCTAAA
1 CCCTAAA
3235 CCCTAAA
1 CCCTAAA
3242 CCCTAAA
1 CCCTAAA
3249 CCCTAAA
1 CCCTAAA
3256 CCCTAAA
1 CCCTAAA
3263 CCCTAAA
1 CCCTAAA
3270 CCCTAAA
1 CCCTAAA
3277 CCCTAAA
1 CCCTAAA
3284 CCCTAAA
1 CCCTAAA
3291 CCCTAAA
1 CCCTAAA
3298 CCCTAAA
1 CCCTAAA
3305 CCCTAAA
1 CCCTAAA
3312 CCCTAAA
1 CCCTAAA
3319 CCCTAAA
1 CCCTAAA
3326 CCCTAAA
1 CCCTAAA
3333 CCCTAAA
1 CCCTAAA
3340 CCCTAAA
1 CCCTAAA
3347 -CCTAAAA
1 CCCT-AAA
3354 CCCTAAA
1 CCCTAAA
3361 CCCTAAA
1 CCCTAAA
3368 -CCTAAA
1 CCCTAAA
3374 CCCTAAAA
1 CCCT-AAA
*
3382 ACCTAAA
1 CCCTAAA
3389 CCCTAAA
1 CCCTAAA
**
3396 --AAAAA
1 CCCTAAA
****
3401 AAAAAAA
1 CCCTAAA
****
3408 AAAAAAA
1 CCCTAAA
3415 CCCTAAA
1 CCCTAAA
3422 CCCTAAAAA
1 CCCT--AAA
****
3431 AAAAAAA
1 CCCTAAA
****
3438 AAAAAAA
1 CCCTAAA
*
3445 ACCTAAA
1 CCCTAAA
3452 CCCTAAAA
1 CCCT-AAA
3460 CCCTAAA
1 CCCTAAA
3467 CCCTAAAA
1 CCCT-AAA
3475 CCCTAAA
1 CCCTAAA
3482 CCCTAAA
1 CCCTAAA
3489 CCCTAAA
1 CCCTAAA
3496 CCCTAAA
1 CCCTAAA
3503 CCCTAAA
1 CCCTAAA
3510 CCCTAAAA
1 CCCT-AAA
3518 CCCTAAA
1 CCCTAAA
3525 CCCTAAA
1 CCCTAAA
3532 -CCTAAA
1 CCCTAAA
3538 CCCTAAA
1 CCCTAAA
3545 CCCTAAA
1 CCCTAAA
3552 CCCT-AA
1 CCCTAAA
3558 CCCTAAA
1 CCCTAAA
3565 CCCTAAA
1 CCCTAAA
3572 CCCT-AA
1 CCCTAAA
3578 CCCTAAAA
1 CCCT-AAA
3586 CCCTAAA
1 CCCTAAA
3593 -CCTAAA
1 CCCTAAA
3599 CCCTAAA
1 CCCTAAA
3606 CCCTAAA
1 CCCTAAA
3613 CCCTAAA
1 CCCTAAA
3620 CCCTAAA
1 CCCTAAA
3627 CCCTAAA
1 CCCTAAA
3634 CCCTAAA
1 CCCTAAA
3641 CCCTAAA
1 CCCTAAA
3648 CCCTAAA
1 CCCTAAA
3655 CCCTAAA
1 CCCTAAA
3662 -CCTAAA
1 CCCTAAA
3668 CCCTAAA
1 CCCTAAA
3675 CCCTAAA
1 CCCTAAA
3682 CCCTAAA
1 CCCTAAA
3689 CCCTAAA
1 CCCTAAA
3696 CCCTAAA
1 CCCTAAA
3703 CCCTAAA
1 CCCTAAA
3710 CCCTAAA
1 CCCTAAA
3717 -CCTAAA
1 CCCTAAA
3723 CCCTAAA
1 CCCTAAA
3730 CCCTAAA
1 CCCTAAA
3737 CCCTAAA
1 CCCTAAA
3744 CCCTAAA
1 CCCTAAA
3751 CCCTAAA
1 CCCTAAA
3758 CCCTAAA
1 CCCTAAA
3765 CCCTAAA
1 CCCTAAA
3772 CCCTAAA
1 CCCTAAA
3779 CCCTAAA
1 CCCTAAA
3786 CCCTAAA
1 CCCTAAA
3793 CCCTAAA
1 CCCTAAA
3800 CCCTAAA
1 CCCTAAA
3807 CCCTAAA
1 CCCTAAA
3814 CCCTAAA
1 CCCTAAA
3821 CCCT--A
1 CCCTAAA
3826 -CCTAAA
1 CCCTAAA
3832 CCCTAAA
1 CCCTAAA
3839 CCCTAAA
1 CCCTAAA
3846 CCCTAAA
1 CCCTAAA
3853 CCCT-AA
1 CCCTAAA
3859 CCCTAAA
1 CCCTAAA
3866 CCCTAAAA
1 CCCT-AAA
3874 CCCTAAA
1 CCCTAAA
3881 CCCTAAAA
1 CCCT-AAA
3889 CCCTAAA
1 CCCTAAA
3896 CCCTAAA
1 CCCTAAA
3903 CCCTAAA
1 CCCTAAA
3910 CCCTAAA
1 CCCTAAA
3917 CCCTAAA
1 CCCTAAA
3924 CCCTAAA
1 CCCTAAA
3931 CCCTAAA
1 CCCTAAA
3938 CCCTAAA
1 CCCTAAA
3945 CCCTAAA
1 CCCTAAA
3952 CCCTAAA
1 CCCTAAA
3959 CCCTAAA
1 CCCTAAA
3966 CCCTAAA
1 CCCTAAA
3973 CCCTAAAA
1 CCCT-AAA
3981 CCCTAAA
1 CCCTAAA
3988 CCCTAAA
1 CCCTAAA
3995 CCCTAAA
1 CCCTAAA
4002 CCCTAAA
1 CCCTAAA
4009 CCCTAAA
1 CCCTAAA
4016 CCCT-AA
1 CCCTAAA
4022 CCCT-AA
1 CCCTAAA
4028 CCCTAAA
1 CCCTAAA
4035 CCCTAAA
1 CCCTAAA
4042 CCCTAAA
1 CCCTAAA
4049 CCCTAAA
1 CCCTAAA
4056 CCCTAAA
1 CCCTAAA
4063 CCCTAAA
1 CCCTAAA
4070 CCCTAAA
1 CCCTAAA
4077 CCCT-AA
1 CCCTAAA
4083 CCCTAAA
1 CCCTAAA
4090 CCCTAAA
1 CCCTAAA
4097 CCCTAAA
1 CCCTAAA
4104 CCCTAAA
1 CCCTAAA
4111 CCCT-AA
1 CCCTAAA
4117 CCCT-AA
1 CCCTAAA
4123 CCCTAAA
1 CCCTAAA
4130 CCCT-AA
1 CCCTAAA
4136 CCCTAAA
1 CCCTAAA
4143 CCCTAAA
1 CCCTAAA
4150 CCCTAAA
1 CCCTAAA
4157 CCCTAAA
1 CCCTAAA
4164 CCCTAAA
1 CCCTAAA
4171 CCCTAAA
1 CCCTAAA
4178 CCCTAAA
1 CCCTAAA
4185 CCCTAAA
1 CCCTAAA
4192 CCCTAAA
1 CCCTAAA
4199 CCCTAAA
1 CCCTAAA
4206 CCCTAAA
1 CCCTAAA
4213 CCCTAAA
1 CCCTAAA
4220 CCCTAAA
1 CCCTAAA
4227 CCCTAAA
1 CCCTAAA
4234 CCCTAAA
1 CCCTAAA
4241 CCCCTAAA
1 -CCCTAAA
4249 CCCTAAA
1 CCCTAAA
4256 CCCTAAA
1 CCCTAAA
4263 CCCTAAAA
1 CCCT-AAA
4271 CCCTAAA
1 CCCTAAA
4278 CCCTAAA
1 CCCTAAA
4285 CCCTAAA
1 CCCTAAA
4292 CCCTAAA
1 CCCTAAA
4299 CCCTAAA
1 CCCTAAA
4306 CCCTAAA
1 CCCTAAA
4313 CCCTAAA
1 CCCTAAA
4320 CCCTAAA
1 CCCTAAA
4327 CCCTAAA
1 CCCTAAA
4334 CCCTAAA
1 CCCTAAA
4341 CCCTAAA
1 CCCTAAA
4348 CCCTAAA
1 CCCTAAA
4355 CCCTAAA
1 CCCTAAA
4362 CCCTAAA
1 CCCTAAA
4369 CCCTAAA
1 CCCTAAA
4376 CCCTAAA
1 CCCTAAA
4383 CCCTAAA
1 CCCTAAA
4390 CCCTAAA
1 CCCTAAA
4397 CCCTAAA
1 CCCTAAA
4404 CCCTAAA
1 CCCTAAA
4411 CCCTAAA
1 CCCTAAA
4418 CCCTAAA
1 CCCTAAA
4425 CCCTAAA
1 CCCTAAA
4432 CCCTAAA
1 CCCTAAA
4439 CCCTAAA
1 CCCTAAA
4446 CCCTAAA
1 CCCTAAA
4453 CCCT-AA
1 CCCTAAA
4459 CCCTAAA
1 CCCTAAA
4466 CCCTAAA
1 CCCTAAA
4473 CCCTAAA
1 CCCTAAA
4480 CCCTAAA
1 CCCTAAA
4487 CCCTAAA
1 CCCTAAA
4494 CCCTAAA
1 CCCTAAA
4501 CCCTAAA
1 CCCTAAA
4508 CCCTAAA
1 CCCTAAA
4515 CCCTAAA
1 CCCTAAA
4522 CCCTAAA
1 CCCTAAA
4529 CCCTAAA
1 CCCTAAA
4536 CCCTAAA
1 CCCTAAA
4543 CCCTAAA
1 CCCTAAA
4550 CCCTAAA
1 CCCTAAA
4557 CCCTAAAA
1 CCCT-AAA
4565 CCCTAAA
1 CCCTAAA
4572 CCCTAAA
1 CCCTAAA
4579 CCCTAAA
1 CCCTAAA
4586 CCCTAAA
1 CCCTAAA
4593 CCCTAAA
1 CCCTAAA
4600 CCCTAAAA
1 CCCT-AAA
4608 CCCTAAA
1 CCCTAAA
4615 CCCTAAA
1 CCCTAAA
4622 CCCTAAAA
1 CCCT-AAA
4630 CCCTAAA
1 CCCTAAA
4637 CCCTAAA
1 CCCTAAA
4644 CCCTAAA
1 CCCTAAA
4651 CCCTAAA
1 CCCTAAA
4658 CCCTAAA
1 CCCTAAA
4665 CCCTAAA
1 CCCTAAA
4672 CCCT-AA
1 CCCTAAA
4678 CCCTAAA
1 CCCTAAA
4685 CCCTAAA
1 CCCTAAA
4692 CCCTAAAA
1 CCCT-AAA
4700 CCCTAAA
1 CCCTAAA
4707 CCCTAAA
1 CCCTAAA
4714 CCCTAAA
1 CCCTAAA
4721 CCCTAAA
1 CCCTAAA
4728 CCCTAAA
1 CCCTAAA
4735 CCCTAAA
1 CCCTAAA
4742 CCCTAAA
1 CCCTAAA
4749 CCCTAAA
1 CCCTAAA
4756 CCCTAAA
1 CCCTAAA
4763 CCCTAAA
1 CCCTAAA
4770 CCCTAAAA
1 CCCT-AAA
4778 CCCTAAA
1 CCCTAAA
4785 CCCTAAA
1 CCCTAAA
4792 CCCTAAA
1 CCCTAAA
4799 CCCTAAA
1 CCCTAAA
4806 CCCTAAA
1 CCCTAAA
4813 CCCTAAA
1 CCCTAAA
4820 CCCTAAA
1 CCCTAAA
4827 CCCTAAAA
1 CCCT-AAA
4835 CCCTAAA
1 CCCTAAA
4842 CCCTAAA
1 CCCTAAA
4849 CCCTAAA
1 CCCTAAA
4856 CCCTAAA
1 CCCTAAA
4863 CCCTAAA
1 CCCTAAA
4870 CCCTAAA
1 CCCTAAA
4877 CCCTAAA
1 CCCTAAA
4884 CCCTAAA
1 CCCTAAA
4891 CCCTAAA
1 CCCTAAA
4898 CCCTAAA
1 CCCTAAA
4905 CCCTAAA
1 CCCTAAA
4912 CCCTAAA
1 CCCTAAA
4919 CCCTAAA
1 CCCTAAA
4926 CCCTAAA
1 CCCTAAA
4933 CCCTAAA
1 CCCTAAA
4940 CCCT-AA
1 CCCTAAA
4946 CCCTAAA
1 CCCTAAA
4953 CCCTAAA
1 CCCTAAA
4960 CCCTAAA
1 CCCTAAA
4967 CCCTAAA
1 CCCTAAA
4974 CCCTAAA
1 CCCTAAA
4981 CCCTAAAA
1 CCCT-AAA
4989 CCCTAAA
1 CCCTAAA
4996 CCCTAAA
1 CCCTAAA
5003 CCCTAAA
1 CCCTAAA
5010 CCCCTAAA
1 -CCCTAAA
5018 CCCTAAA
1 CCCTAAA
5025 CCCTAAA
1 CCCTAAA
5032 CCCTAAA
1 CCCTAAA
5039 CCCTAAA
1 CCCTAAA
5046 CCCTAAA
1 CCCTAAA
5053 CCCTAAA
1 CCCTAAA
5060 CCCTAAA
1 CCCTAAA
5067 CCCTAAA
1 CCCTAAA
5074 CCCTAAA
1 CCCTAAA
5081 CCCTAAA
1 CCCTAAA
5088 CCCTAAA
1 CCCTAAA
5095 CCCTAAA
1 CCCTAAA
5102 CCCTAAA
1 CCCTAAA
5109 CCCTAAA
1 CCCTAAA
5116 CCCTAAA
1 CCCTAAA
5123 CCCTAAA
1 CCCTAAA
5130 CCCTAAA
1 CCCTAAA
5137 CCCTAACCAA
1 CCCT-A--AA
5147 CCCTAAA
1 CCCTAAA
5154 CCCTAAA
1 CCCTAAA
5161 CCCTAAA
1 CCCTAAA
5168 CCCTAAA
1 CCCTAAA
5175 CCCT-AA
1 CCCTAAA
5181 CCCTAAA
1 CCCTAAA
5188 CCCTAAA
1 CCCTAAA
5195 CCCTAAA
1 CCCTAAA
5202 CCCT-AA
1 CCCTAAA
5208 CCCTAAA
1 CCCTAAA
5215 CCCTAAA
1 CCCTAAA
5222 CCCTAAA
1 CCCTAAA
5229 CCCTAAA
1 CCCTAAA
5236 CCCTAAA
1 CCCTAAA
5243 CCCTAAA
1 CCCTAAA
5250 CCCTAAA
1 CCCTAAA
5257 -CCTAAA
1 CCCTAAA
5263 CCCTAAA
1 CCCTAAA
5270 CCCTAAA
1 CCCTAAA
5277 CCCTAAA
1 CCCTAAA
5284 CCCTAAA
1 CCCTAAA
5291 CCCTAAA
1 CCCTAAA
5298 CCCTAAA
1 CCCTAAA
5305 CCCTAAA
1 CCCTAAA
5312 CCCTAAA
1 CCCTAAA
5319 CCCTAAA
1 CCCTAAA
5326 CCCTAAA
1 CCCTAAA
5333 CCCTAAA
1 CCCTAAA
5340 CCCTAAA
1 CCCTAAA
5347 CCCTAAA
1 CCCTAAA
5354 CCCTAAA
1 CCCTAAA
5361 CCCTAAA
1 CCCTAAA
5368 CCCTAAA
1 CCCTAAA
5375 CCCTAAA
1 CCCTAAA
5382 CCCT-AA
1 CCCTAAA
5388 CCCTAAA
1 CCCTAAA
5395 CCCTAAA
1 CCCTAAA
5402 CCCTAAA
1 CCCTAAA
5409 CCCTAAA
1 CCCTAAA
5416 CCCTAAA
1 CCCTAAA
5423 CCCTAAA
1 CCCTAAA
5430 CCCTAAA
1 CCCTAAA
5437 CCCTAAA
1 CCCTAAA
5444 -CCTAAA
1 CCCTAAA
5450 CCCTAAA
1 CCCTAAA
5457 CCCT-AA
1 CCCTAAA
5463 CCCTAAA
1 CCCTAAA
5470 CCCTAAA
1 CCCTAAA
5477 --CTAAA
1 CCCTAAA
5482 CCCTAAA
1 CCCTAAA
5489 CCCTAAA
1 CCCTAAA
5496 -CCTAAA
1 CCCTAAA
5502 CCCTAAA
1 CCCTAAA
5509 CCCTAAA
1 CCCTAAA
5516 CCCTAAA
1 CCCTAAA
5523 CCCTAAAA
1 CCCT-AAA
5531 CCCTAAA
1 CCCTAAA
5538 CCCTAAA
1 CCCTAAA
5545 CCCTAAA
1 CCCTAAA
5552 CCCTAAA
1 CCCTAAA
5559 CCCTAAA
1 CCCTAAA
5566 CCCTAAA
1 CCCTAAA
5573 CCCTAAA
1 CCCTAAA
5580 CCCTAAA
1 CCCTAAA
5587 CCCTAAAA
1 CCCT-AAA
5595 CCCTAAA
1 CCCTAAA
5602 CCCTAAA
1 CCCTAAA
5609 -CCTAAA
1 CCCTAAA
5615 CCCTAAA
1 CCCTAAA
5622 CCCTAAA
1 CCCTAAA
5629 CCCTAAA
1 CCCTAAA
5636 CCCTAAA
1 CCCTAAA
5643 CCCTAAA
1 CCCTAAA
5650 CCCTAAA
1 CCCTAAA
5657 -CCTAAA
1 CCCTAAA
5663 CCCTAAA
1 CCCTAAA
5670 CCCTAAA
1 CCCTAAA
5677 CCCTAAA
1 CCCTAAA
5684 CCCTAAA
1 CCCTAAA
5691 CCCTAAA
1 CCCTAAA
5698 CCCTAAA
1 CCCTAAA
5705 CCCTAAA
1 CCCTAAA
5712 CCCTAAA
1 CCCTAAA
5719 CCCTAAA
1 CCCTAAA
5726 -CCTAAA
1 CCCTAAA
*
5732 ---AAAA
1 CCCTAAA
5736 CCC--AA
1 CCCTAAA
5741 CCCTAAA
1 CCCTAAA
5748 CCCTAAA
1 CCCTAAA
5755 CCCTAAA
1 CCCTAAA
5762 CCCTAAAA
1 CCCT-AAA
5770 CCCTAAA
1 CCCTAAA
5777 CCCTAAA
1 CCCTAAA
5784 CCCTAAAA
1 CCCT-AAA
5792 CCCTAAA
1 CCCTAAA
5799 CCCTAAA
1 CCCTAAA
5806 CCCTAAA
1 CCCTAAA
5813 CCCTAAA
1 CCCTAAA
5820 CCCTAAA
1 CCCTAAA
5827 CCCTAAA
1 CCCTAAA
5834 CCCTAAA
1 CCCTAAA
5841 CCCTAAA
1 CCCTAAA
5848 CCCTAAA
1 CCCTAAA
5855 CCCTAAA
1 CCCTAAA
5862 CCCTAAA
1 CCCTAAA
5869 CCCTAAA
1 CCCTAAA
5876 CCCTAAA
1 CCCTAAA
5883 CCCTAAA
1 CCCTAAA
5890 CCCTAAA
1 CCCTAAA
5897 CCCTAAA
1 CCCTAAA
5904 CCCTAAA
1 CCCTAAA
5911 CCCTAAA
1 CCCTAAA
5918 CCCTAAA
1 CCCTAAA
5925 CCCTAAAA
1 CCCT-AAA
5933 CCCTAAA
1 CCCTAAA
5940 CCCTAAA
1 CCCTAAA
5947 --CTAAA
1 CCCTAAA
5952 CCCTAAA
1 CCCTAAA
5959 CCCTAAA
1 CCCTAAA
5966 CCCTAAA
1 CCCTAAA
5973 CCCTAAA
1 CCCTAAA
5980 CCCTAAA
1 CCCTAAA
5987 CCCTAAAA
1 CCCT-AAA
5995 CCCTAAA
1 CCCTAAA
6002 CCCTAAA
1 CCCTAAA
6009 CCCTAAA
1 CCCTAAA
6016 CCCTAAA
1 CCCTAAA
6023 CCCTAAA
1 CCCTAAA
6030 CCCTAAAA
1 CCCT-AAA
6038 CCCTAAA
1 CCCTAAA
6045 CCCTAAAA
1 CCCT-AAA
6053 CCCTAAA
1 CCCTAAA
6060 CCCTAAA
1 CCCTAAA
6067 CCCTAAAA
1 CCCT-AAA
6075 CCCTAAA
1 CCCTAAA
6082 CCCTAAA
1 CCCTAAA
6089 CCCTAAAA
1 CCCT-AAA
6097 CCCTAAA
1 CCCTAAA
6104 CCCTAAA
1 CCCTAAA
6111 CCCTAAAA
1 CCCT-AAA
6119 CCCTAAA
1 CCCTAAA
6126 CCCTAAA
1 CCCTAAA
6133 CCCTAAA
1 CCCTAAA
6140 CCCTAAA
1 CCCTAAA
6147 CCCTAAA
1 CCCTAAA
6154 CCCTAAAA
1 CCCT-AAA
6162 CCCTAAA
1 CCCTAAA
6169 CCCTAAAA
1 CCCT-AAA
6177 CCCTAAA
1 CCCTAAA
6184 CCCTACTAAA
1 -CC--CTAAA
6194 CCCT-AA
1 CCCTAAA
6200 CCCTAAA
1 CCCTAAA
6207 CCCTAAA
1 CCCTAAA
6214 CCCTAAA
1 CCCTAAA
6221 CCCTAAA
1 CCCTAAA
6228 CCCTAAA
1 CCCTAAA
6235 CCCTAAA
1 CCCTAAA
6242 CCCTAAA
1 CCCTAAA
6249 CCCTAAA
1 CCCTAAA
6256 CCCTAAA
1 CCCTAAA
6263 CCCTAAAAA
1 CCCT--AAA
6272 CCCTAAA
1 CCCTAAA
6279 CCCTAAA
1 CCCTAAA
***
6286 -AAAAAA
1 CCCTAAA
6292 CCCTAAAA
1 CCCT-AAA
6300 CCCTAAA
1 CCCTAAA
6307 CCCTAAA
1 CCCTAAA
6314 CCCTAAA
1 CCCTAAA
6321 CCCTAAA
1 CCCTAAA
6328 CCCTAAA
1 CCCTAAA
6335 CCCTAAA
1 CCCTAAA
6342 CCCTAAA
1 CCCTAAA
6349 CCCTAAA
1 CCCTAAA
6356 CCCTAAA
1 CCCTAAA
6363 CCCTAAA
1 CCCTAAA
6370 CCCTAAA
1 CCCTAAA
6377 CCCTAAA
1 CCCTAAA
6384 CCCTAAA
1 CCCTAAA
6391 CCCTAAA
1 CCCTAAA
6398 CCCTAAA
1 CCCTAAA
6405 CCCTAAA
1 CCCTAAA
6412 CCCTAAA
1 CCCTAAA
6419 CCCTAAA
1 CCCTAAA
6426 CCCTAAA
1 CCCTAAA
6433 CCCTAAA
1 CCCTAAA
6440 CCCTAAA
1 CCCTAAA
6447 CCCTAAA
1 CCCTAAA
6454 CCCTAAA
1 CCCTAAA
6461 CCCTAAA
1 CCCTAAA
6468 CCCTAAA
1 CCCTAAA
6475 CCCTAAA
1 CCCTAAA
6482 CCCTAAA
1 CCCTAAA
6489 CCCTAAA
1 CCCTAAA
6496 CCCTAAA
1 CCCTAAA
6503 CCCTAAA
1 CCCTAAA
6510 CCCTAAA
1 CCCTAAA
6517 CCCTAAA
1 CCCTAAA
6524 CCCTAAAA
1 CCCT-AAA
6532 CCCTAAAAA
1 CCCT--AAA
6541 CCCTAAA
1 CCCTAAA
6548 -CCTAAA
1 CCCTAAA
6554 CCCTAAAA
1 CCCT-AAA
6562 CCCTAAA
1 CCCTAAA
6569 CCCTAAA
1 CCCTAAA
6576 CCCTAAA
1 CCCTAAA
6583 CCCTAAA
1 CCCTAAA
6590 CCCTAAA
1 CCCTAAA
6597 CCCTAAA
1 CCCTAAA
6604 CCCTAAA
1 CCCTAAA
6611 CCCTAAA
1 CCCTAAA
6618 CCCTAAA
1 CCCTAAA
6625 -CCTAAA
1 CCCTAAA
6631 CCCTAAA
1 CCCTAAA
6638 CCCTAAA
1 CCCTAAA
6645 CCCTAAA
1 CCCTAAA
6652 -CCTAAA
1 CCCTAAA
6658 CCCTAAA
1 CCCTAAA
6665 CCCTAAA
1 CCCTAAA
6672 CCCTAAA
1 CCCTAAA
6679 CCCTAAAA
1 CCCT-AAA
6687 CCCTAAA
1 CCCTAAA
6694 -CCTAAA
1 CCCTAAA
6700 CCCTAAA
1 CCCTAAA
6707 CCCTAAA
1 CCCTAAA
6714 CCCTAAA
1 CCCTAAA
6721 CCCTAAA
1 CCCTAAA
6728 CCCTAAA
1 CCCTAAA
6735 CCCTAAA
1 CCCTAAA
6742 CCCTAAA
1 CCCTAAA
6749 CCCTAAA
1 CCCTAAA
6756 CCCTAAA
1 CCCTAAA
6763 CCCTAAA
1 CCCTAAA
6770 CCCCCTAAA
1 --CCCTAAA
6779 CCCTAAA
1 CCCTAAA
6786 CCCTAAAA
1 CCCT-AAA
6794 CCCT--A
1 CCCTAAA
6799 -CCTAAA
1 CCCTAAA
6805 CCCTAAA
1 CCCTAAA
6812 CCCTAAA
1 CCCTAAA
6819 CCCTAAA
1 CCCTAAA
6826 CCCTAAA
1 CCCTAAA
6833 CCCTAAA
1 CCCTAAA
6840 CCCTAAAAA
1 CCCT--AAA
6849 CCCTAAA
1 CCCTAAA
6856 CCCTAAA
1 CCCTAAA
6863 CCCTAAAAA
1 CCCT--AAA
6872 CCCTAAA
1 CCCTAAA
*
6879 -AC-AAA
1 CCCTAAA
6884 -CCTAAAA
1 CCCT-AAA
6891 CCCTAAA
1 CCCTAAA
6898 CCCTAAAA
1 CCCT-AAA
6906 CCCTAAAA
1 CCCT-AAA
6914 CCCTAAAA
1 CCCT-AAA
6922 CCCTAAAA
1 CCCT-AAA
6930 CCCTAAAA
1 CCCT-AAA
6938 CCCTAAA
1 CCCTAAA
6945 CCCTAAA
1 CCCTAAA
6952 CCCTAAA
1 CCCTAAA
6959 CCCTAAAA
1 CCCT-AAA
6967 CCCTAAA
1 CCCTAAA
6974 CCCTAAA
1 CCCTAAA
6981 CCCTAAA
1 CCCTAAA
6988 CCCTAAA
1 CCCTAAA
6995 CCCTAAA
1 CCCTAAA
7002 CCCTAAA
1 CCCTAAA
7009 CCCTAAA
1 CCCTAAA
7016 CCCTAAA
1 CCCTAAA
7023 CCCTAAA
1 CCCTAAA
7030 CCCTAAA
1 CCCTAAA
7037 CCCTAAA
1 CCCTAAA
7044 CCCT-AA
1 CCCTAAA
7050 CCCTAAA
1 CCCTAAA
7057 CCCTAAA
1 CCCTAAA
7064 CCCT-AA
1 CCCTAAA
7070 -CCT-AA
1 CCCTAAA
7075 CCCTAAA
1 CCCTAAA
7082 CCCTAAA
1 CCCTAAA
7089 CCCTAAA
1 CCCTAAA
7096 CCCTAAA
1 CCCTAAA
7103 CCCTAAA
1 CCCTAAA
7110 CCCTAAA
1 CCCTAAA
7117 -CCTAAA
1 CCCTAAA
7123 CCCTAAA
1 CCCTAAA
7130 CCCTAAA
1 CCCTAAA
7137 CCCT-AA
1 CCCTAAA
7143 CCCTAAA
1 CCCTAAA
7150 CCCT-AA
1 CCCTAAA
7156 -CCTAAA
1 CCCTAAA
7162 CCCTAAA
1 CCCTAAA
7169 CCCT-AA
1 CCCTAAA
7175 -CCTAAA
1 CCCTAAA
7181 CCCTAAA
1 CCCTAAA
7188 CCCTAAA
1 CCCTAAA
7195 CCCTAAA
1 CCCTAAA
7202 CCCTAAA
1 CCCTAAA
7209 CCCT-AA
1 CCCTAAA
7215 -CCT-AA
1 CCCTAAA
7220 CCCTAAA
1 CCCTAAA
7227 CCCTAAA
1 CCCTAAA
7234 CCCTAAA
1 CCCTAAA
7241 CCCTAAA
1 CCCTAAA
7248 CCCTAAA
1 CCCTAAA
7255 CCCTAAA
1 CCCTAAA
7262 CCCTAAA
1 CCCTAAA
7269 CCCTAAA
1 CCCTAAA
7276 CCCTAAA
1 CCCTAAA
7283 CCCT-AA
1 CCCTAAA
7289 CCCTAAA
1 CCCTAAA
7296 CCCTAAA
1 CCCTAAA
7303 CCCTAAA
1 CCCTAAA
7310 CCCTAAA
1 CCCTAAA
7317 CCCCTAAA
1 -CCCTAAA
7325 CCCCTAAA
1 -CCCTAAA
7333 CCCTAAA
1 CCCTAAA
*
7340 CCC-AGA
1 CCCTAAA
* *
7346 CCCCAGA
1 CCCTAAA
* *
7353 CCCCAGA
1 CCCTAAA
* *
7360 CCCCAGA
1 CCCTAAA
* *
7367 CCCCAGA
1 CCCTAAA
* *
7374 CCCCAGA
1 CCCTAAA
* *
7381 CCCCAGA
1 CCCTAAA
* *
7388 CCCCAGA
1 CCCTAAA
* *
7395 CCCCAGA
1 CCCTAAA
* *
7402 CCCCAGA
1 CCCTAAA
*
7409 CCC-AGA
1 CCCTAAA
* *
7415 CCCCAGA
1 CCCTAAA
* *
7422 CCCCAGA
1 CCCTAAA
* *
7429 CCCCAGA
1 CCCTAAA
* *
7436 CCCTGAG
1 CCCTAAA
* *
7443 CCCTGAG
1 CCCTAAA
* *
7450 CCCTGAG
1 CCCTAAA
* *
7457 CCCTGAG
1 CCCTAAA
* *
7464 CCCTGAG
1 CCCTAAA
*
7471 CCCT-GA
1 CCCTAAA
* * *
7477 GCCTGAG
1 CCCTAAA
* *
7484 CCCTGAG
1 CCCTAAA
* *
7491 CCCTGAG
1 CCCTAAA
* *
7498 CCCTGAG
1 CCCTAAA
* *
7505 CCCTGAG
1 CCCTAAA
* *
7512 CCCTGAG
1 CCCTAAA
* *
7519 CCCTGAG
1 CCCTAAA
* *
7526 CCCTGAG
1 CCCTAAA
* *
7533 CCCTGAG
1 CCCTAAA
* *
7540 CCCTGAG
1 CCCTAAA
* *
7547 CCCTGAG
1 CCCTAAA
* *
7554 CCCTGAG
1 CCCTAAA
* *
7561 CCCTGAG
1 CCCTAAA
* *
7568 CCCTGAG
1 CCCTAAA
* *
7575 CCCTGAG
1 CCCTAAA
* *
7582 CCCTGAG
1 CCCTAAA
* *
7589 CCCTGAG
1 CCCTAAA
* *
7596 CCCTGAG
1 CCCTAAA
*
7603 CCCTACA
1 CCCTAAA
*
7610 CCCTACA
1 CCCTAAA
*
7617 CCCTACA
1 CCCTAAA
7624 CCCTAAA
1 CCCTAAA
*
7631 CCCTACA
1 CCCTAAA
*
7638 CCCTACA
1 CCCTAAA
*
7645 CCCTACA
1 CCCTAAA
*
7652 CCCTACA
1 CCCTAAA
*
7659 CCCTACA
1 CCCTAAA
*
7666 CCCTACA
1 CCCTAAA
*
7673 CCCTACA
1 CCCTAAA
*
7680 CCCTACA
1 CCCTAAA
*
7687 CCCTACAC
1 CCCTA-AA
* *
7695 CCCTGAC
1 CCCTAAA
*
7702 CCCTGAA
1 CCCTAAA
* *
7709 CCCTGAC
1 CCCTAAA
* *
7716 CCCTGAC
1 CCCTAAA
*
7723 CCCTGAA
1 CCCTAAA
* *
7730 CCCTGAC
1 CCCTAAA
*
7737 CCCTGAA
1 CCCTAAA
* *
7744 CCCTGAC
1 CCCTAAA
* *
7751 CCCTGAC
1 CCCTAAA
* *
7758 CCCTGAC
1 CCCTAAA
*
7765 CCCCAAA
1 CCCTAAA
*
7772 CCCCAAA
1 CCCTAAA
*
7779 CCCCAAA
1 CCCTAAA
*
7786 CCCCAAA
1 CCCTAAA
*
7793 CCCCAAAA
1 -CCCTAAA
*
7801 CCCCAAA
1 CCCTAAA
*
7808 CCCCCAAA
1 -CCCTAAA
* *
7816 CCCCAAG
1 CCCTAAA
*
7823 CCCTAAG
1 CCCTAAA
* *
7830 CCCCAAG
1 CCCTAAA
* *
7837 CCCCAAG
1 CCCTAAA
* *
7844 CCCCAAG
1 CCCTAAA
*
7851 CCCCAAA
1 CCCTAAA
*
7858 CCCCAAA
1 CCCTAAA
*
7865 CCCCAAA
1 CCCTAAA
*
7872 CCCCAAA
1 CCCTAAA
* *
7879 CCATGAA
1 CCCTAAA
7886 CCCTAAAA
1 CCCT-AAA
7894 CCCTAAA
1 CCCTAAA
** *
7901 CTATGAA
1 CCCTAAA
7908 -CCTAAA
1 CCCTAAA
*
7914 GCCCTGAA
1 -CCCTAAA
* *
7922 CCTTGAA
1 CCCTAAA
* *
7929 CCATGAA
1 CCCTAAA
*
7936 TCCTAAA
1 CCCTAAA
7943 CCCTAAAA
1 CCCT-AAA
*
7951 CCCTGAA
1 CCCTAAA
7958 CCCTAAA
1 CCCTAAA
7965 CCC-AGAA
1 CCCTA-AA
* *
7972 CTCTGAA
1 CCCTAAA
7979 CCCTAAA
1 CCCTAAA
* *
7986 TCCTGAA
1 CCCTAAA
7993 CCCTAAA
1 CCCTAAA
8000 CCC-AGAA
1 CCCTA-AA
*
8007 CCCTGAA
1 CCCTAAA
8014 CCCTAAA
1 CCCTAAA
*
8021 --CT-AG
1 CCCTAAA
8025 CCCTAAA
1 CCCTAAA
8032 CCCTAAA
1 CCCTAAA
*
8039 --CT-AG
1 CCCTAAA
*
8043 CCCTAAG
1 CCCTAAA
8050 CCCTAAA
1 CCCTAAA
*
8057 CCTTAAA
1 CCCTAAA
8064 CCCTAAA
1 CCCTAAA
*
8071 --CT-AG
1 CCCTAAA
*
8075 CCCTAAG
1 CCCTAAA
8082 CCCTAAA
1 CCCTAAA
** *
8089 CTTTAAG
1 CCCTAAA
8096 CCCTAAA
1 CCCTAAA
8103 CCCTAAA
1 CCCTAAA
*
8110 CCCTATAG
1 CCCTA-AA
8118 CCCTAAA
1 CCCTAAA
** *
8125 CATTAAG
1 CCCTAAA
8132 CCCTAAA
1 CCCTAAA
8139 CCCTAAA
1 CCCTAAA
8146 CCCTACAA
1 CCCTA-AA
8154 CCCT-AA
1 CCCTAAA
8160 CCCTACAA
1 CCCTA-AA
8168 CCCTAAA
1 CCCTAAA
8175 CCCTACAA
1 CCCTA-AA
*
8183 CTCTAAA
1 CCCTAAA
8190 CCCTACAA
1 CCCTA-AA
8198 CCCTAAA
1 CCCTAAA
**
8205 CTTTAAA
1 CCCTAAA
*
8212 CCGTAAA
1 CCCTAAA
*
8219 CCATAAA
1 CCCTAAA
8226 CCCTAAA
1 CCCTAAA
**
8233 CCCTCTA
1 CCCTAAA
8240 CCCTAAA
1 CCCTAAA
8247 CCCTAAA
1 CCCTAAA
*
8254 CTCTAAA
1 CCCTAAA
*
8261 CCTTAAA
1 CCCTAAA
8268 -CCTAAAA
1 CCCT-AAA
8275 CCCTAAA
1 CCCTAAA
*
8282 -CTTGAAA
1 CCCT-AAA
*
8289 -CCTGAA
1 CCCTAAA
* *
8295 TCTTGAAA
1 CCCT-AAA
8303 CCCTAAA
1 CCCTAAA
8310 CCCTAAA
1 CCCTAAA
8317 CCCTAAA
1 CCCTAAA
8324 -CCTGAAA
1 CCCT-AAA
*
8331 CCTTAAA
1 CCCTAAA
8338 CCCTAAA
1 CCCTAAA
*
8345 CCTTAAA
1 CCCTAAA
8352 CCCTAAAA
1 CCCT-AAA
*
8360 CTCTAAA
1 CCCTAAA
8367 CCCTAAA
1 CCCTAAA
8374 CCCTA
1 CCCTA
8379 TTGATTTAGC
Statistics
Matches: 7927, Mismatches: 162, Indels: 564
0.92 0.02 0.07
Matches are distributed among these distances:
4 24 0.00
5 91 0.01
6 596 0.08
7 6475 0.82
8 612 0.08
9 112 0.01
10 17 0.00
ACGTcount: A:0.42, C:0.42, G:0.01, T:0.14
Consensus pattern (7 bp):
CCCTAAA
Found at i:8033 original size:18 final size:18
Alignment explanation
Indices: 8007--8110 Score: 117
Period size: 18 Copynumber: 5.8 Consensus size: 18
7997 AAACCCAGAA
*
8007 CCCTGAACCCTAAACTAG
1 CCCTAAACCCTAAACTAG
8025 CCCTAAACCCTAAACTAG
1 CCCTAAACCCTAAACTAG
*
8043 CCCTAAGCCCT-AA--A-
1 CCCTAAACCCTAAACTAG
*
8057 CCTTAAACCCTAAACTAG
1 CCCTAAACCCTAAACTAG
*
8075 CCCTAAGCCCTAAACTTTAAG
1 CCCTAAACCCTAAAC--T-AG
8096 CCCTAAACCCTAAAC
1 CCCTAAACCCTAAAC
8111 CCTATAGCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
14 9 0.12
15 3 0.04
17 3 0.04
18 40 0.56
20 1 0.01
21 16 0.22
ACGTcount: A:0.37, C:0.38, G:0.07, T:0.18
Consensus pattern (18 bp):
CCCTAAACCCTAAACTAG
Found at i:8064 original size:32 final size:32
Alignment explanation
Indices: 8028--8139 Score: 143
Period size: 32 Copynumber: 3.4 Consensus size: 32
8018 AAACTAGCCC
*
8028 TAAACCCTAAACTAGCCCTAAGCCCTAAACCT
1 TAAACCCTAAACTAGCCCTAAGCCCTAAACAT
*
8060 TAAACCCTAAACTAGCCCTAAGCCCTAAACTT
1 TAAACCCTAAACTAGCCCTAAGCCCTAAACAT
* *
8092 TAAGCCCTAAACCCTAAACCCTATAGCCCTAAACAT
1 TAAACCCTAAA--CT-AGCCCTA-AGCCCTAAACAT
*
8128 TAAGCCCTAAAC
1 TAAACCCTAAAC
8140 CCTAAACCCT
Statistics
Matches: 72, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
32 41 0.57
34 3 0.04
35 6 0.08
36 22 0.31
ACGTcount: A:0.38, C:0.36, G:0.06, T:0.20
Consensus pattern (32 bp):
TAAACCCTAAACTAGCCCTAAGCCCTAAACAT
Found at i:17234 original size:31 final size:31
Alignment explanation
Indices: 17196--17261 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
17186 TAGAAAGAAA
* *
17196 GAAACTTGTATAGGTGCTCTCCTCTACTGAT
1 GAAACTTGCATAGGTGCTCTCCTCTACTAAT
17227 GAAACTTGCATAGGTGCTCTCCTCTACTAAT
1 GAAACTTGCATAGGTGCTCTCCTCTACTAAT
17258 GAAA
1 GAAA
17262 GTTGGAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (31 bp):
GAAACTTGCATAGGTGCTCTCCTCTACTAAT
Found at i:29697 original size:16 final size:16
Alignment explanation
Indices: 29652--29706 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
29642 ATCCGCAGGG
*
29652 TGGGATATACCTCAGC
1 TGGGATATACCTAAGC
* * *
29668 CGGGCTAT-CCTAAGT
1 TGGGATATACCTAAGC
29683 TGGGATATACCTAAGC
1 TGGGATATACCTAAGC
*
29699 CGGGATAT
1 TGGGATAT
29707 CCTCGGAATG
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
15 11 0.37
16 19 0.63
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (16 bp):
TGGGATATACCTAAGC
Found at i:29921 original size:42 final size:42
Alignment explanation
Indices: 29825--29921 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
29815 TCCGAACCGG
* * **
29825 GATGGGATATCAGAGGGATATCCCCGGAATTGATTATTCTTA
1 GATGGGATATGAGAGGGATATCCCCGGAATGGATTATTCCAA
* * *
29867 GAAGGGAAATGAGAGGGATATCCCTGGAATGGATTATTCCAA
1 GATGGGATATGAGAGGGATATCCCCGGAATGGATTATTCCAA
*
29909 GGTGGGATATGAG
1 GATGGGATATGAG
29922 CAGTATTTAC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.26
Consensus pattern (42 bp):
GATGGGATATGAGAGGGATATCCCCGGAATGGATTATTCCAA
Found at i:30335 original size:3 final size:3
Alignment explanation
Indices: 30329--30354 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
30319 AACACAAAAA
30329 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
30355 GAAGCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:34718 original size:31 final size:31
Alignment explanation
Indices: 34681--34743 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
34671 AGTACGAGAA
34681 GGGAGGAACAGAGAATAATGAAAACAAAAAG
1 GGGAGGAACAGAGAATAATGAAAACAAAAAG
*
34712 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
1 GGGAGGAACAGAGAATAATGAAAACAAAAAG
34743 G
1 G
34744 AAATAAGGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.57, C:0.05, G:0.32, T:0.06
Consensus pattern (31 bp):
GGGAGGAACAGAGAATAATGAAAACAAAAAG
Found at i:39903 original size:13 final size:13
Alignment explanation
Indices: 39885--39911 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
39875 TTCTTGAAAT
39885 ACTTGTGTTTGAC
1 ACTTGTGTTTGAC
39898 ACTTGTGTTTGAC
1 ACTTGTGTTTGAC
39911 A
1 A
39912 TATCACTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.15, G:0.22, T:0.44
Consensus pattern (13 bp):
ACTTGTGTTTGAC
Found at i:40497 original size:16 final size:16
Alignment explanation
Indices: 40476--40507 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
40466 TAATATTCAA
40476 CTGAAACTATTCTCTT
1 CTGAAACTATTCTCTT
40492 CTGAAACTATTCTCTT
1 CTGAAACTATTCTCTT
40508 TCTTCCACGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (16 bp):
CTGAAACTATTCTCTT
Found at i:43829 original size:21 final size:21
Alignment explanation
Indices: 43803--43853 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
43793 GTTAAAAACA
43803 TGAACCGGACACCAAAACAAC
1 TGAACCGGACACCAAAACAAC
43824 TGAACCGGACACCAAAACAAC
1 TGAACCGGACACCAAAACAAC
43845 TGAACCGGA
1 TGAACCGGA
43854 ACGGAATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.45, C:0.31, G:0.18, T:0.06
Consensus pattern (21 bp):
TGAACCGGACACCAAAACAAC
Found at i:49762 original size:11 final size:11
Alignment explanation
Indices: 49732--49805 Score: 60
Period size: 11 Copynumber: 6.6 Consensus size: 11
49722 ACAAAAAAAT
49732 TTATTTTTTAATA
1 TTATTTTTT--TA
*
49745 TTA-TTTTTTG
1 TTATTTTTTTA
*
49755 TTATTTTTTTC
1 TTATTTTTTTA
*
49766 TTATTTTGTTA
1 TTATTTTTTTA
*
49777 TTATTTTATTA
1 TTATTTTTTTA
* *
49788 TTATATTGTTA
1 TTATTTTTTTA
*
49799 CTATTTT
1 TTATTTT
49806 ATTGTTATTG
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
10 4 0.08
11 39 0.76
12 5 0.10
13 3 0.06
ACGTcount: A:0.20, C:0.03, G:0.04, T:0.73
Consensus pattern (11 bp):
TTATTTTTTTA
Found at i:49774 original size:19 final size:19
Alignment explanation
Indices: 49745--49808 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
49735 TTTTTTAATA
*
49745 TTATT-TTTTGTTATTTTT
1 TTATTATTTTGTTATTATT
*
49763 TTCTTATTTTGTTATTATT
1 TTATTATTTTGTTATTATT
*
49782 TTATTATTATATTGTTACTATT
1 TTATTA-T-T-TTGTTATTATT
49804 TTATT
1 TTATT
49809 GTTATTGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 4 0.11
19 17 0.45
20 1 0.03
21 1 0.03
22 15 0.39
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (19 bp):
TTATTATTTTGTTATTATT
Found at i:49780 original size:22 final size:22
Alignment explanation
Indices: 49732--49814 Score: 89
Period size: 22 Copynumber: 3.9 Consensus size: 22
49722 ACAAAAAAAT
*
49732 TTATT-TTTTAATATTATTTT-
1 TTATTATTTTATTATTATTTTG
* * *
49752 TTGTTATTTTTTTCTTATTTTG
1 TTATTATTTTATTATTATTTTG
*
49774 TTATTATTTTATTATTATATTG
1 TTATTATTTTATTATTATTTTG
* *
49796 TTACTATTTTATTGTTATT
1 TTATTATTTTATTATTATT
49815 GTTTGAATAT
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
20 4 0.08
21 12 0.24
22 34 0.68
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.72
Consensus pattern (22 bp):
TTATTATTTTATTATTATTTTG
Found at i:61496 original size:19 final size:18
Alignment explanation
Indices: 61474--61508 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
61464 ATTCAAAGAT
61474 TTTTTAATAGATGTGAAA
1 TTTTTAATAGATGTGAAA
*
61492 TTTTTAGTAGATGTGAA
1 TTTTTAATAGATGTGAA
61509 TAAGATATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (18 bp):
TTTTTAATAGATGTGAAA
Found at i:63188 original size:33 final size:33
Alignment explanation
Indices: 63151--63252 Score: 106
Period size: 33 Copynumber: 3.2 Consensus size: 33
63141 TATAAACTGT
63151 AGATTAAAGAATATCAATCTCATTTAACACTCA
1 AGATTAAAGAATATCAATCTCATTTAACACTCA
* * * * **
63184 AGATT-AA-ACT-TAAAT-TTATATAA-ACTGT
1 AGATTAAAGAATATCAATCTCATTTAACACTCA
*
63212 AGATTAAAGAATATCAACCTCATTTAACACTCA
1 AGATTAAAGAATATCAATCTCATTTAACACTCA
63245 AGATTAAA
1 AGATTAAA
63253 CTTACCAGTA
Statistics
Matches: 51, Mismatches: 13, Indels: 10
0.69 0.18 0.14
Matches are distributed among these distances:
28 8 0.16
29 8 0.16
30 6 0.12
31 5 0.10
32 8 0.16
33 16 0.31
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.31
Consensus pattern (33 bp):
AGATTAAAGAATATCAATCTCATTTAACACTCA
Found at i:63226 original size:61 final size:61
Alignment explanation
Indices: 63131--63256 Score: 243
Period size: 61 Copynumber: 2.1 Consensus size: 61
63121 ATTCCCTAAC
*
63131 CTTAAATTTATATAAACTGTAGATTAAAGAATATCAATCTCATTTAACACTCAAGATTAAA
1 CTTAAATTTATATAAACTGTAGATTAAAGAATATCAACCTCATTTAACACTCAAGATTAAA
63192 CTTAAATTTATATAAACTGTAGATTAAAGAATATCAACCTCATTTAACACTCAAGATTAAA
1 CTTAAATTTATATAAACTGTAGATTAAAGAATATCAACCTCATTTAACACTCAAGATTAAA
63253 CTTA
1 CTTA
63257 CCAGTAACTT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.45, C:0.14, G:0.06, T:0.34
Consensus pattern (61 bp):
CTTAAATTTATATAAACTGTAGATTAAAGAATATCAACCTCATTTAACACTCAAGATTAAA
Found at i:75841 original size:22 final size:22
Alignment explanation
Indices: 75813--75857 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
75803 TACTTAATCT
*
75813 AAATGCTGAATGCTAAACGGGA
1 AAATGCTGAACGCTAAACGGGA
75835 AAATGCTGAACGCTAAACGGGA
1 AAATGCTGAACGCTAAACGGGA
75857 A
1 A
75858 GGAGTCGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.16, G:0.27, T:0.16
Consensus pattern (22 bp):
AAATGCTGAACGCTAAACGGGA
Found at i:78679 original size:14 final size:15
Alignment explanation
Indices: 78651--78683 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
78641 CATAAATCAT
78651 AAATTTAAAATTTTG
1 AAATTTAAAATTTTG
*
78666 AAATTTGAAA-TTTG
1 AAATTTAAAATTTTG
78680 AAAT
1 AAAT
78684 CCAAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (15 bp):
AAATTTAAAATTTTG
Found at i:82314 original size:15 final size:15
Alignment explanation
Indices: 82277--82347 Score: 56
Period size: 15 Copynumber: 4.7 Consensus size: 15
82267 ACACTCATGC
*
82277 TTATTTTTA-TTTACA
1 TTATTTATATTTTA-A
*
82292 TTATTTTATATTTTAG
1 TTA-TTTATATTTTAA
* *
82308 TTATTTATGTTTAAA
1 TTATTTATATTTTAA
*
82323 ATA-TTATATTTTAA
1 TTATTTATATTTTAA
*
82337 TTACTTATATT
1 TTATTTATATT
82348 ATTGTGTTGT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
14 11 0.25
15 21 0.48
16 8 0.18
17 4 0.09
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TTATTTATATTTTAA
Found at i:82775 original size:18 final size:18
Alignment explanation
Indices: 82755--82789 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
82745 AGAGAAACAA
82755 AAAAGAA-AAAAAAAGTT
1 AAAAGAATAAAAAAAGTT
*
82772 AAAAGAATATAAAAAGTT
1 AAAAGAATAAAAAAAGTT
82790 TAAATTGCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (18 bp):
AAAAGAATAAAAAAAGTT
Found at i:85245 original size:29 final size:29
Alignment explanation
Indices: 85212--85299 Score: 176
Period size: 29 Copynumber: 3.0 Consensus size: 29
85202 AATGCCAAAT
85212 GACTCTTCTTTTAGCCTCTAGTCAGTATA
1 GACTCTTCTTTTAGCCTCTAGTCAGTATA
85241 GACTCTTCTTTTAGCCTCTAGTCAGTATA
1 GACTCTTCTTTTAGCCTCTAGTCAGTATA
85270 GACTCTTCTTTTAGCCTCTAGTCAGTATA
1 GACTCTTCTTTTAGCCTCTAGTCAGTATA
85299 G
1 G
85300 CTGCAAGTTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (29 bp):
GACTCTTCTTTTAGCCTCTAGTCAGTATA
Found at i:89721 original size:22 final size:21
Alignment explanation
Indices: 89678--89721 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
89668 ATAATTTCTA
*
89678 TTCTTTTTTTTCCCTTCCTAT
1 TTCTTTTTTTTCCCTTCATAT
* *
89699 TTCTTTTTATTTCCTTTTATAT
1 TTCTTTTT-TTTCCCTTCATAT
89721 T
1 T
89722 ACTAGAGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.70
Consensus pattern (21 bp):
TTCTTTTTTTTCCCTTCATAT
Found at i:90612 original size:7 final size:7
Alignment explanation
Indices: 90600--90633 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
90590 AAAAATTATA
90600 TTTTTCT
1 TTTTTCT
90607 TTTTTCT
1 TTTTTCT
*
90614 TTTTCTTT
1 TTTT-TCT
90622 TTTTTCT
1 TTTTTCT
90629 TTTTT
1 TTTTT
90634 TGAATTTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Found at i:90618 original size:13 final size:13
Alignment explanation
Indices: 90600--90624 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90590 AAAAATTATA
90600 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
90613 TTTTTCTTTTTT
1 TTTTTCTTTTTT
90625 TTCTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:92214 original size:32 final size:31
Alignment explanation
Indices: 92177--92250 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 31
92167 ACCTTTGTTC
* *
92177 ACTGTAATATAATAGGGATGTAATTGAATA-A
1 ACTGTAATA-AATAGAGATGTAATAGAATAGA
*
92208 AGCTGTAATGAAATAGAGTTGTAATAGAATAGA
1 A-CTGTAAT-AAATAGAGATGTAATAGAATAGA
92241 ACTGTAATAA
1 ACTGTAATAA
92251 CTATTCTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
31 3 0.08
32 31 0.84
33 3 0.08
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.30
Consensus pattern (31 bp):
ACTGTAATAAATAGAGATGTAATAGAATAGA
Found at i:92249 original size:16 final size:16
Alignment explanation
Indices: 92177--92249 Score: 53
Period size: 16 Copynumber: 4.6 Consensus size: 16
92167 ACCTTTGTTC
* *
92177 ACTGTAATATAATAGGG
1 ACTGTAATAGAATA-GA
*
92194 A-TGTAATTGAATA-A
1 ACTGTAATAGAATAGA
92208 AGCTGTAAT-GAAATAGA
1 A-CTGTAATAG-AATAGA
**
92225 GTTGTAATAGAATAGA
1 ACTGTAATAGAATAGA
92241 ACTGTAATA
1 ACTGTAATA
92250 ACTATTCTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
14 1 0.02
15 1 0.02
16 39 0.89
17 3 0.07
ACGTcount: A:0.45, C:0.04, G:0.21, T:0.30
Consensus pattern (16 bp):
ACTGTAATAGAATAGA
Found at i:92472 original size:17 final size:17
Alignment explanation
Indices: 92450--92482 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
92440 AATTATTATT
*
92450 AAATATAATTTAATAAA
1 AAATATAAGTTAATAAA
92467 AAATATAAGTTAATAA
1 AAATATAAGTTAATAA
92483 CATTCATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (17 bp):
AAATATAAGTTAATAAA
Found at i:93016 original size:18 final size:18
Alignment explanation
Indices: 92993--93027 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
92983 ACGTGGTAGT
*
92993 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
93011 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
93028 ATATCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:93086 original size:40 final size:40
Alignment explanation
Indices: 93035--93239 Score: 302
Period size: 40 Copynumber: 5.1 Consensus size: 40
93025 AGTATATCTG
* *
93035 TTAATACATACTTCATCCGGGTAAATTATACAATTTTCTG
1 TTAATACATACTTCATCCGGGTAAATTATACAGTTTTCTA
* *
93075 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTCATCCGGGTAAATTATACAGTTTTCTA
* * *
93115 TTAATACATACTTCATCCGGATAAATTATATAGTTTTCTG
1 TTAATACATACTTCATCCGGGTAAATTATACAGTTTTCTA
* *
93155 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTCATCCGGGTAAATTATACAGTTTTCTA
* * *
93195 TTAATATATACTTCATTCGGATAAATTATACAGTTTTCTA
1 TTAATACATACTTCATCCGGGTAAATTATACAGTTTTCTA
93235 TTAAT
1 TTAAT
93240 GTGCTTGTGA
Statistics
Matches: 146, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (40 bp):
TTAATACATACTTCATCCGGGTAAATTATACAGTTTTCTA
Found at i:93168 original size:80 final size:80
Alignment explanation
Indices: 93035--93239 Score: 356
Period size: 80 Copynumber: 2.6 Consensus size: 80
93025 AGTATATCTG
* *
93035 TTAATACATACTTCATCCGGGTAAATTATACAATTTTCTGTTAATACATACTTTACCCGGGTAAA
1 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTGTTAATACATACTTTACCCGGGTAAA
93100 TTATACAGTTTTCTA
66 TTATACAGTTTTCTA
*
93115 TTAATACATACTTCATCCGGATAAATTATATAGTTTTCTGTTAATACATACTTTACCCGGGTAAA
1 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTGTTAATACATACTTTACCCGGGTAAA
93180 TTATACAGTTTTCTA
66 TTATACAGTTTTCTA
* * *
93195 TTAATATATACTTCATTCGGATAAATTATACAGTTTTCTATTAAT
1 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTGTTAAT
93240 GTGCTTGTGA
Statistics
Matches: 118, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 118 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (80 bp):
TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTGTTAATACATACTTTACCCGGGTAAA
TTATACAGTTTTCTA
Found at i:93204 original size:20 final size:19
Alignment explanation
Indices: 93178--93239 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
93168 TACCCGGGTA
93178 AATTATACAGTTTTCTATT
1 AATTATACAGTTTTCTATT
* *
93197 AATATATAC--TTCATTCGGATA
1 AAT-TATACAGTT--TTC-TATT
93218 AATTATACAGTTTTCTATT
1 AATTATACAGTTTTCTATT
93237 AAT
1 AAT
93240 GTGCTTGTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
18 2 0.06
19 8 0.24
20 16 0.48
21 5 0.15
22 2 0.06
ACGTcount: A:0.35, C:0.11, G:0.06, T:0.47
Consensus pattern (19 bp):
AATTATACAGTTTTCTATT
Found at i:97850 original size:29 final size:30
Alignment explanation
Indices: 97800--97867 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
97790 TGGCCCAAGA
* * *
97800 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTAAAGGACTAATAGT
*
97830 GTAAATATGAAAAGTTAAAGGACTAATAGT
1 GTAAATATCAAAAGTTAAAGGACTAATAGT
*
97860 GCAAATAT
1 GTAAATAT
97868 TTTAAGGGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTAAAGGACTAATAGT
Found at i:100336 original size:46 final size:46
Alignment explanation
Indices: 100279--100552 Score: 415
Period size: 46 Copynumber: 6.0 Consensus size: 46
100269 AGTGTGCTCT
* *
100279 CTGAAATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
100325 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
100371 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
100417 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
100463 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * *
100509 ATGACA-GAAAATAAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
100553 TCATGTCAAA
Statistics
Matches: 214, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 213 1.00
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:101349 original size:16 final size:15
Alignment explanation
Indices: 101320--101357 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
101310 GTTTAGTCCC
101320 TAAGGTTTTTTGGTT
1 TAAGGTTTTTTGGTT
*
101335 TATGGTTTTTATGGTT
1 TAAGGTTTTT-TGGTT
101351 TAAGGTT
1 TAAGGTT
101358 AGTGTTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (15 bp):
TAAGGTTTTTTGGTT
Found at i:101557 original size:34 final size:32
Alignment explanation
Indices: 101443--101569 Score: 164
Period size: 34 Copynumber: 3.8 Consensus size: 32
101433 TTTTAAAAAA
* * *
101443 TAAACTAGGGTTTAGTTTTTTAAAAAAATAAT
1 TAAATTAGGGTTTAGGTTTTTAAAAAATTAAT
* *
101475 TAAATTAGGTTTTAAGGGTTTTAAATAAATTAAT
1 TAAATTAGGGTTT-AGGTTTTTAAA-AAATTAAT
101509 TAAATTAGGGTTTAGAGTTTTTAAGAAAATTAAT
1 TAAATTAGGGTTTAG-GTTTTTAA-AAAATTAAT
*
101543 TAAATTAGGGTTTAGTTTTTTAAAAAA
1 TAAATTAGGGTTTAGGTTTTTAAAAAA
101570 ATAACGTTGT
Statistics
Matches: 83, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
32 15 0.18
33 18 0.22
34 49 0.59
35 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.15, T:0.43
Consensus pattern (32 bp):
TAAATTAGGGTTTAGGTTTTTAAAAAATTAAT
Found at i:102402 original size:39 final size:39
Alignment explanation
Indices: 102340--102529 Score: 281
Period size: 39 Copynumber: 4.9 Consensus size: 39
102330 ATCGTGATCT
* * * *
102340 GAAGCCCGAAGTCTAGCTAAAGCACATAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
** *
102379 GAAGCCCGAAGGCTAACTGAAGCACATAACAGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
* *
102418 GAAGCCCGGAGGCTAACTGAAGTACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
102457 GAAACCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
102496 GAAGCCCGGAGGCTAACTGAAGCACATAAGTGCT
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCT
102530 GAACCGAAAC
Statistics
Matches: 134, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 134 1.00
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:105170 original size:16 final size:16
Alignment explanation
Indices: 105149--105185 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
105139 TCACCAGCTT
105149 AAAGCTTGCTAGGCTC
1 AAAGCTTGCTAGGCTC
105165 AAAGCTTGCTAGGCTC
1 AAAGCTTGCTAGGCTC
105181 AAAGC
1 AAAGC
105186 CCAAATATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (16 bp):
AAAGCTTGCTAGGCTC
Found at i:105345 original size:28 final size:28
Alignment explanation
Indices: 105307--105413 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
105297 GAATCATTCG
* *
105307 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
105335 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
105363 ATATTTCGTACACTAAGCGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
105391 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
105414 ATTTGATTGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.34
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:107976 original size:126 final size:126
Alignment explanation
Indices: 107826--108236 Score: 574
Period size: 126 Copynumber: 3.3 Consensus size: 126
107816 TACAAAAAAT
* * * * *
107826 TCCCACGTGGACGCTCTTTTTCTATAATAGTTCCTGAAAAAATAATATTGAGAAGACGGTTCTAA
1 TCCCACGTAGACGCTCTTTCTCTATAATAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGA
* * *
107891 ACAAATAGTGTCAAAAACGCTTTAAATAGGATGCACTATCAGCAAAATTGATGAAAAGAGC
66 ACAAATAGTGTCAAAAACGCTTTAAGTAGGATGCACTGTCAGCAAAATTGATGAAAAAAGC
* * * *
107952 TCCCATGTGGACGCTCTTTCTCTATAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGATTCTGA
1 TCCCACGTAGACGCTCTTTCTCTATAATAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGA
* *
108017 ACAACTAGTGTCAAAAACGCTTTAAGTAGGATGCATTGTCAGCAAAATTGATGAAAAAAGC
66 ACAAATAGTGTCAAAAACGCTTTAAGTAGGATGCACTGTCAGCAAAATTGATGAAAAAAGC
* * * **
108078 TCCCACGTAGACGCTCTTTTTCTA-AAGTAGTTCCTGAACAAATAATTTTAAGAAGAATATTCTG
1 TCCCACGTAGACGCTCTTTCTCTATAA-TAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTG
* * *
108142 AACAAATAGTGTCAAAAATGCTTCAAGCAGGATGCACTGTCAGCAAAATTGATGAAAAAAGC
65 AACAAATAGTGTCAAAAACGCTTTAAGTAGGATGCACTGTCAGCAAAATTGATGAAAAAAGC
* *
108204 TCCCA-GATAGATGCTCTTTCTCTATAGTAGTTC
1 TCCCACG-TAGACGCTCTTTCTCTATAATAGTTC
108237 ATGTTCAGCC
Statistics
Matches: 253, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
125 2 0.01
126 250 0.99
127 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (126 bp):
TCCCACGTAGACGCTCTTTCTCTATAATAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGA
ACAAATAGTGTCAAAAACGCTTTAAGTAGGATGCACTGTCAGCAAAATTGATGAAAAAAGC
Found at i:112212 original size:30 final size:30
Alignment explanation
Indices: 112171--112234 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
112161 TTAATTAAAT
*
112171 AGAGCTATGAGAAAATTAATGAGAAATTTG
1 AGAGCTATGAGAAAATTAAGGAGAAATTTG
* * *
112201 AGAGCTTTGAGAAATTTAGGGAGAAATTTG
1 AGAGCTATGAGAAAATTAAGGAGAAATTTG
112231 AGAG
1 AGAG
112235 TTTTTTGTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.42, C:0.03, G:0.28, T:0.27
Consensus pattern (30 bp):
AGAGCTATGAGAAAATTAAGGAGAAATTTG
Found at i:129210 original size:15 final size:15
Alignment explanation
Indices: 129190--129233 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
129180 TCATGCCCTT
129190 ACTATGCTTATTTCA
1 ACTATGCTTATTTCA
129205 ACTATGCTTATTTCA
1 ACTATGCTTATTTCA
129220 ACTATGCTTATTTC
1 ACTATGCTTATTTC
129234 TTTATCACTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.48
Consensus pattern (15 bp):
ACTATGCTTATTTCA
Found at i:131423 original size:167 final size:166
Alignment explanation
Indices: 131114--131432 Score: 374
Period size: 167 Copynumber: 1.9 Consensus size: 166
131104 TGTCTCACCT
* * * * *
131114 GTTTCTATGTCTTTATTCTTGCCACTTTGATCTTGGAAGAAGGGTAGTTAAGGAAAAGATAGTTT
1 GTTTCTATGTCTTTATTCTTACCACTTTGATATTGGAAGAAGGCTAGTTAAAGAAAAGACAGTTT
* * * * * * * *
131179 GGAGAGAGGCCTCTATAGCATGATTGTCTTTTTAGTAAAGTGAAATTTAGACCAAGATAGAGTAT
66 GCAGAGAGGCCTCAATAACATGATTGGCTTCTTAGTAAAGTCAAATTTAAACCAAGATAAAGTAT
**
131244 GACTTGAATGTATTTCAATGTGGGGTTCGTAAACTA
131 GACTCAAATGTATTTCAATGTGGGGTTCGTAAACTA
* * *
131280 GTTT-TATGTCTTTATTCTTATCATTTTGATATTGGAAGAAGGCTATTTACAAGAAAAGGACAGT
1 GTTTCTATGTCTTTATTCTTACCACTTTGATATTGGAAGAAGGCTAGTTA-AAGAAAA-GACAGT
* * * * *
131344 TTGCAGTGAGGTCCT-AATAACATGATTGGCTTCTTAGTAGAGTCTAATTTAAACTAAGTTAAAG
64 TTGCAGAGAGG-CCTCAATAACATGATTGGCTTCTTAGTAAAGTCAAATTTAAACCAAGATAAAG
131408 TATGA-TCCAAATGTATTTCAATGTG
128 TATGACT-CAAATGTATTTCAATGTG
131433 AGATTTGTAA
Statistics
Matches: 126, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
165 39 0.31
166 11 0.09
167 73 0.58
168 3 0.02
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.37
Consensus pattern (166 bp):
GTTTCTATGTCTTTATTCTTACCACTTTGATATTGGAAGAAGGCTAGTTAAAGAAAAGACAGTTT
GCAGAGAGGCCTCAATAACATGATTGGCTTCTTAGTAAAGTCAAATTTAAACCAAGATAAAGTAT
GACTCAAATGTATTTCAATGTGGGGTTCGTAAACTA
Found at i:132182 original size:31 final size:31
Alignment explanation
Indices: 132141--132209 Score: 95
Period size: 33 Copynumber: 2.2 Consensus size: 31
132131 GTTAATAATT
*
132141 TATAAAAATT-AGATCAAATTAAAATTTTTA
1 TATAAAAATTAAGATCAAATTAAAATTTATA
*
132171 TATATAAAATTACAGATTAAATTAAAATTTATA
1 TATA-AAAATTA-AGATCAAATTAAAATTTATA
132204 TATAAA
1 TATAAA
132210 TTTGAGATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 4 0.12
31 6 0.18
32 2 0.06
33 22 0.65
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (31 bp):
TATAAAAATTAAGATCAAATTAAAATTTATA
Found at i:135037 original size:133 final size:133
Alignment explanation
Indices: 134865--135126 Score: 506
Period size: 133 Copynumber: 2.0 Consensus size: 133
134855 TACCCGTAGT
134865 GGATTATGTTAGGGAGTAAATCCTGCTGTCTAAGGTTCTGCTATTTTCTGTTTTTGCATCTTCTT
1 GGATTATGTTAGGGAGTAAATCCTGCTGTCTAAGGTTCTGCTATTTTCTGTTTTTGCATCTTCTT
134930 AGCTTTTGATTCTATATTCTTTTGAGGTTTCTTTAAAAGTTCTCGTCATAATATAGAACTTTCTA
66 AGCTTTTGATTCTATATTCTTTTGAGGTTTCTTTAAAAGTTCTCGTCATAATATAGAACTTTCTA
134995 CGG
131 CGG
134998 GGATTATGTTAGGGAGTAAATCCTGCTGTCTAAGGTTCTGCTATTTTCTGTTTTTGCATCTTCTT
1 GGATTATGTTAGGGAGTAAATCCTGCTGTCTAAGGTTCTGCTATTTTCTGTTTTTGCATCTTCTT
* *
135063 TGCTTTTGATTCTATATTCTTTTGAGGTTTCTTTAAAGGTTCTCGTCATAATATAGAACTTTCT
66 AGCTTTTGATTCTATATTCTTTTGAGGTTTCTTTAAAAGTTCTCGTCATAATATAGAACTTTCT
135127 TTACGCTTTG
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 127 1.00
ACGTcount: A:0.20, C:0.15, G:0.18, T:0.47
Consensus pattern (133 bp):
GGATTATGTTAGGGAGTAAATCCTGCTGTCTAAGGTTCTGCTATTTTCTGTTTTTGCATCTTCTT
AGCTTTTGATTCTATATTCTTTTGAGGTTTCTTTAAAAGTTCTCGTCATAATATAGAACTTTCTA
CGG
Found at i:141082 original size:12 final size:12
Alignment explanation
Indices: 141065--141095 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
141055 TTTCTTGGCG
141065 TTCATTTCTAGT
1 TTCATTTCTAGT
141077 TTCATTTCTAGT
1 TTCATTTCTAGT
141089 TTCATTT
1 TTCATTT
141096 AACATTGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.06, T:0.61
Consensus pattern (12 bp):
TTCATTTCTAGT
Found at i:149716 original size:11 final size:11
Alignment explanation
Indices: 149677--149717 Score: 52
Period size: 10 Copynumber: 3.9 Consensus size: 11
149667 ACATTGCAGT
149677 AATATATATAAA
1 AATATAT-TAAA
149689 AA-AT-TTAAA
1 AATATATTAAA
149698 AATA-ATTAAA
1 AATATATTAAA
149708 AATATATTAA
1 AATATATTAA
149718 TATAGTTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
9 6 0.23
10 11 0.42
11 7 0.27
12 2 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
AATATATTAAA
Found at i:158125 original size:40 final size:40
Alignment explanation
Indices: 158012--158149 Score: 168
Period size: 40 Copynumber: 3.5 Consensus size: 40
158002 CTCGAGAATA
** ** *
158012 TAAAGTGGATAGGATCCGTTCCTGATTCACTATAATACCT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* *
158052 CAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAATT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* * *
158092 TAAAGTGAATAGGATTTATTCCTGATTCACTATGGAAACT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* *
158132 TAAGGCGGATAGGATTTG
1 TAAAGTGGATAGGATTTG
158150 ACCTGAAAAG
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (40 bp):
TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
Found at i:158204 original size:78 final size:78
Alignment explanation
Indices: 158114--158265 Score: 232
Period size: 78 Copynumber: 1.9 Consensus size: 78
158104 GATTTATTCC
* * *
158114 TGATTCACTATGGAAACTTAAGGCGGATAGGATTTGACCTGAAAAGGTAATCCTGATTCGCTACA
1 TGATTCACTATGGAAACCTAAGGCGGATAGGATTTGACCTGAAAAGATAATCCTGATTCACTACA
158179 GTTACATGATATA
66 GTTACATGATATA
* * * * *
158192 TGATTCATTATGGTAACCTAAGGTGGATAGGATTTGACTTGAAAAGATAATCTTGATTCACTACA
1 TGATTCACTATGGAAACCTAAGGCGGATAGGATTTGACCTGAAAAGATAATCCTGATTCACTACA
158257 GTTACATGA
66 GTTACATGA
158266 GATGTGACTC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 66 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.32
Consensus pattern (78 bp):
TGATTCACTATGGAAACCTAAGGCGGATAGGATTTGACCTGAAAAGATAATCCTGATTCACTACA
GTTACATGATATA
Found at i:175556 original size:10 final size:10
Alignment explanation
Indices: 175538--175576 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
175528 ACAAAATAAT
175538 GAAGAGAAGG
1 GAAGAGAAGG
*
175548 GAAGGGAAGG
1 GAAGAGAAGG
175558 GAAGAGAAGAG
1 GAAGAGAAG-G
*
175569 AAAGAGAA
1 GAAGAGAA
175577 AAGAGAGGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (10 bp):
GAAGAGAAGG
Found at i:185004 original size:75 final size:75
Alignment explanation
Indices: 184925--185367 Score: 778
Period size: 75 Copynumber: 5.9 Consensus size: 75
184915 AAACAATAGT
* * * *
184925 AGAGGAAGCAAATGTGGTAATTGCCACAAGCCAAGTACAAGAAGAAGCGCAGCATGGGGTAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
184990 AAACCATTGA
66 AAACCATTGA
185000 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
185065 AAACCATTGA
66 AAACCATTGA
* * *
185075 AGAGGAAGCAACTGTGGTAATTGCCACAAACCAAGAACAAAAAGAAGCGCTGCATGGCGAAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
185140 AAACCATTGA
66 AAACCATTGA
* * * *
185150 AAAGGAAGCAAATGTGGTCATTGCAACAAACCGAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
185215 AAACCATTGA
66 AAACCATTGA
185225 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
185290 AAACCATTGA
66 AAACCATTGA
*
185300 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGTACAAGAAGAAGCGCTGCATGGGGAAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
185365 AAA
66 AAA
185368 TCGCAACACC
Statistics
Matches: 349, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 349 1.00
ACGTcount: A:0.44, C:0.16, G:0.28, T:0.12
Consensus pattern (75 bp):
AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
AAACCATTGA
Found at i:192453 original size:14 final size:14
Alignment explanation
Indices: 192434--192485 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
192424 TTATAACTTT
192434 TTAAAATTAAATAA
1 TTAAAATTAAATAA
*
192448 TTAAAATATAAATTTA
1 TTAAAAT-TAAA-TAA
*
192464 TTAATAATTTAATAA
1 TTAA-AATTAAATAA
*
192479 TTGAAAT
1 TTAAAAT
192486 CTACCTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
14 10 0.32
15 9 0.29
16 9 0.29
17 3 0.10
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (14 bp):
TTAAAATTAAATAA
Found at i:194374 original size:25 final size:26
Alignment explanation
Indices: 194325--194374 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
194315 TATTTAAAAT
** *
194325 TTAATAATTTTTTATATTTTTATTTA
1 TTAATAATTTTTTATATAGTCATTTA
194351 TTAA-AATTTTTTATATAGTCATTT
1 TTAATAATTTTTTATATAGTCATTT
194375 TAACTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (26 bp):
TTAATAATTTTTTATATAGTCATTTA
Found at i:196000 original size:49 final size:49
Alignment explanation
Indices: 195928--196028 Score: 184
Period size: 49 Copynumber: 2.1 Consensus size: 49
195918 GGATCCAAGA
* *
195928 GTTATCTAATTTTGATCTCGGATGAATACAGATTGCTTCAAGTATCATG
1 GTTATCTAATCTTGATCTCGGATGAATACAGATTGCTTCAAATATCATG
195977 GTTATCTAATCTTGATCTCGGATGAATACAGATTGCTTCAAATATCATG
1 GTTATCTAATCTTGATCTCGGATGAATACAGATTGCTTCAAATATCATG
196026 GTT
1 GTT
196029 GCTTGTTCTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.39
Consensus pattern (49 bp):
GTTATCTAATCTTGATCTCGGATGAATACAGATTGCTTCAAATATCATG
Found at i:198790 original size:18 final size:18
Alignment explanation
Indices: 198769--198805 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
198759 TATTTAAATG
198769 AAGTA-TTATATGAAAGTA
1 AAGTACTTA-ATGAAAGTA
198787 AAGTACTTAATGAAAGTA
1 AAGTACTTAATGAAAGTA
198805 A
1 A
198806 GATGAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.51, C:0.03, G:0.16, T:0.30
Consensus pattern (18 bp):
AAGTACTTAATGAAAGTA
Found at i:206262 original size:46 final size:48
Alignment explanation
Indices: 206193--206370 Score: 136
Period size: 53 Copynumber: 3.7 Consensus size: 48
206183 CACATCACAC
** * *
206193 ACCGAAGCCATAGCCTTGCCATGGTCTTACAC-GATTCACA-TATCAT
1 ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTATCAT
* *
206239 ACCGAAGCCATATCCCAGACATGGTCTTATACGGAATCACATTATCACATTAT
1 ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTAT--C---AT
* * * *
206292 ACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAGTCACATT-GC--
1 ACCGAAGCCATAGCCCAGAC-ATGGTCTTACACGGAATCACATTATCAT
* *
206337 ACCGATGCCATAGCCCAG-CTATGGTCTTAAACGG
1 ACCGAAGCCATAGCCCAGAC-ATGGTCTTACACGG
206371 GCACACTTAT
Statistics
Matches: 113, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
45 33 0.29
46 27 0.24
47 7 0.06
48 3 0.03
50 2 0.02
52 1 0.01
53 40 0.35
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTATCAT
Found at i:206309 original size:53 final size:55
Alignment explanation
Indices: 206228--206334 Score: 157
Period size: 53 Copynumber: 2.0 Consensus size: 55
206218 CTTACACGAT
*
206228 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACATATCATACCGAAGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
206283 TCACAT-T-ATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATT
1 TCACATATCATACCGAAGCCATAGCCCAGCTATGGTCTTATACGGAATCACATT
206335 GCACCGATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
52 1 0.02
53 40 0.83
54 1 0.02
55 6 0.12
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (55 bp):
TCACATATCATACCGAAGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:206347 original size:45 final size:45
Alignment explanation
Indices: 206283--206370 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
206273 AATCACATTA
* *
206283 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAG
1 TCACATTACACCGATGCCATAGCCCAGCTATGGTCTTAAACGGAG
*
206328 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTACACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
206371 GCACACTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (45 bp):
TCACATTACACCGATGCCATAGCCCAGCTATGGTCTTAAACGGAG
Found at i:207824 original size:30 final size:30
Alignment explanation
Indices: 207788--207876 Score: 169
Period size: 30 Copynumber: 3.0 Consensus size: 30
207778 TAAAGTCCCA
207788 CAGGCTTCGTGCTGGAAATGTATCCGGGCG
1 CAGGCTTCGTGCTGGAAATGTATCCGGGCG
*
207818 CAGGCTTCGTGTTGGAAATGTATCCGGGCG
1 CAGGCTTCGTGCTGGAAATGTATCCGGGCG
207848 CAGGCTTCGTGCTGGAAATGTATCCGGGC
1 CAGGCTTCGTGCTGGAAATGTATCCGGGC
207877 TAAAGTCCCG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.17, C:0.22, G:0.36, T:0.25
Consensus pattern (30 bp):
CAGGCTTCGTGCTGGAAATGTATCCGGGCG
Found at i:226044 original size:14 final size:14
Alignment explanation
Indices: 226025--226055 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
226015 ACAATGACAC
226025 GTGATCTATCATGT
1 GTGATCTATCATGT
226039 GTGATCTATCATGT
1 GTGATCTATCATGT
226053 GTG
1 GTG
226056 CCTTATGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.13, G:0.26, T:0.42
Consensus pattern (14 bp):
GTGATCTATCATGT
Found at i:226455 original size:3 final size:3
Alignment explanation
Indices: 226447--226472 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
226437 TTGCCAATTA
226447 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
226473 ACCCCCTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:228675 original size:26 final size:28
Alignment explanation
Indices: 228626--228678 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
228616 TGTTAATAGT
228626 CAAATTTAACTAAAAAAAGAATAAAGAC
1 CAAATTTAACTAAAAAAAGAATAAAGAC
* *
228654 CAAA-TTAATTAAAAAAA-TATAAAGA
1 CAAATTTAACTAAAAAAAGAATAAAGA
228679 TTGAGAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 7 0.30
27 12 0.52
28 4 0.17
ACGTcount: A:0.66, C:0.08, G:0.06, T:0.21
Consensus pattern (28 bp):
CAAATTTAACTAAAAAAAGAATAAAGAC
Found at i:238153 original size:3 final size:3
Alignment explanation
Indices: 238145--238174 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
238135 TCCAAATCAC
238145 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
238175 TTGGATTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:239187 original size:3 final size:3
Alignment explanation
Indices: 239176--239206 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
239166 ATCATCCATT
239176 TAA TCAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
239207 ATGTTATGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:254600 original size:17 final size:17
Alignment explanation
Indices: 254578--254611 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
254568 TTAAATTTTA
*
254578 TATAAGTTTCTAATAAT
1 TATAAGTATCTAATAAT
*
254595 TATAAGTATGTAATAAT
1 TATAAGTATCTAATAAT
254612 CTAATTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (17 bp):
TATAAGTATCTAATAAT
Found at i:260454 original size:27 final size:29
Alignment explanation
Indices: 260424--260489 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 29
260414 GTCTCTAAAA
* * *
260424 TTTTTAAAAATTTTTATTATA-CTT-TTT
1 TTTTTAAAAATTTTGATTAAACCTTAATT
*
260451 TTTTTGAAAATTTTGATTAAACCTTAATT
1 TTTTTAAAAATTTTGATTAAACCTTAATT
260480 TTTTTAAAAA
1 TTTTTAAAAA
260490 AAAGTTCATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 18 0.56
28 3 0.09
29 11 0.34
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.58
Consensus pattern (29 bp):
TTTTTAAAAATTTTGATTAAACCTTAATT
Found at i:264997 original size:23 final size:22
Alignment explanation
Indices: 264966--265009 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
264956 TATTTTTTTC
*
264966 CCAACTTTAAAATTTTTTATTAA
1 CCAAATTTAAAA-TTTTTATTAA
*
264989 CCAAATTTAACATTTTTATTA
1 CCAAATTTAAAATTTTTATTA
265010 GAGCTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.48
Consensus pattern (22 bp):
CCAAATTTAAAATTTTTATTAA
Found at i:265405 original size:22 final size:22
Alignment explanation
Indices: 265380--265430 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
265370 TAAAAGGTTA
265380 TAATCTTGAAATATTGATATCT
1 TAATCTTGAAATATTGATATCT
265402 TAATCTTGAAATATTGATATCT
1 TAATCTTGAAATATTGATATCT
265424 TAA-CTTG
1 TAATCTTG
265431 TATGGAACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 4 0.14
22 25 0.86
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (22 bp):
TAATCTTGAAATATTGATATCT
Found at i:270410 original size:18 final size:18
Alignment explanation
Indices: 270383--270475 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
270373 CAATCCCAAC
*
270383 TACTGTATACGTGAACAG
1 TACTGTATACGTGAATAG
*
270401 TACCGTATACGTGAATAG
1 TACTGTATACGTGAATAG
*
270419 TGCTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
270437 TACTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
* *
270455 TGCTGTATACGTTAATAG
1 TACTGTATACGTGAATAG
270473 TAC
1 TAC
270476 CGTAAACGGT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (18 bp):
TACTGTATACGTGAATAG
Found at i:270432 original size:36 final size:36
Alignment explanation
Indices: 270385--270479 Score: 163
Period size: 36 Copynumber: 2.6 Consensus size: 36
270375 ATCCCAACTA
*
270385 CTGTATACGTGAACAGTACCGTATACGTGAATAGTG
1 CTGTATACGTGAATAGTACCGTATACGTGAATAGTG
*
270421 CTGTATACGTGAATAGTACTGTATACGTGAATAGTG
1 CTGTATACGTGAATAGTACCGTATACGTGAATAGTG
*
270457 CTGTATACGTTAATAGTACCGTA
1 CTGTATACGTGAATAGTACCGTA
270480 AACGGTCGTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 55 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (36 bp):
CTGTATACGTGAATAGTACCGTATACGTGAATAGTG
Found at i:284412 original size:15 final size:15
Alignment explanation
Indices: 284392--284499 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
284382 TTTATGGAAA
*
284392 ATCAAAGATATGGGT
1 ATCAAATATATGGGT
**
284407 ATCAAATA-ATGGAA
1 ATCAAATATATGGGT
*
284421 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
***
284437 ATCAAATAT-TGAAA
1 ATCAAATATATGGGT
284451 AGTCAAATATATGGGT
1 A-TCAAATATATGGGT
**
284467 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
*
284481 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
284497 ATC
1 ATC
284500 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 12 0.17
15 45 0.65
16 12 0.17
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.27
Consensus pattern (15 bp):
ATCAAATATATGGGT
Found at i:284421 original size:30 final size:30
Alignment explanation
Indices: 284385--284499 Score: 169
Period size: 30 Copynumber: 3.8 Consensus size: 30
284375 ATCCATATTT
284385 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAATCAAAGATATGGGTATCAAATA
*
284415 ATGGAAAGTCAAAGATATGGGTATCAAAT-
1 ATGGAAAATCAAAGATATGGGTATCAAATA
* *
284444 ATTGAAAAGTCAAATATATGGGTATCAAATA
1 ATGGAAAA-TCAAAGATATGGGTATCAAATA
* *
284475 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAATCAAAGATATGGGTATC
284500 GAGATATTGG
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
29 6 0.08
30 64 0.85
31 5 0.07
ACGTcount: A:0.45, C:0.07, G:0.22, T:0.26
Consensus pattern (30 bp):
ATGGAAAATCAAAGATATGGGTATCAAATA
Found at i:284486 original size:60 final size:60
Alignment explanation
Indices: 284388--284508 Score: 199
Period size: 60 Copynumber: 2.0 Consensus size: 60
284378 CATATTTATG
284388 GAAAATCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATC-AAATATT
1 GAAAATCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATCGAAATATT
* * *
284447 GAAAAGTCAAATATATGGGTATCAAATATTGGAAAGTCAAAGATATGGGTATCGAGATATT
1 GAAAA-TCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATCGAAATATT
284508 G
1 G
284509 GCATAATAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
59 5 0.09
60 45 0.79
61 7 0.12
ACGTcount: A:0.45, C:0.07, G:0.22, T:0.26
Consensus pattern (60 bp):
GAAAATCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATCGAAATATT
Found at i:289108 original size:15 final size:15
Alignment explanation
Indices: 289088--289195 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
289078 TTTATGGAAA
289088 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
289103 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
289117 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
289133 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
289147 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
289163 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
289177 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
289193 ATC
1 ATC
289196 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:289117 original size:30 final size:30
Alignment explanation
Indices: 289081--289195 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
289071 ATCCATATTT
*
289081 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
289111 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
289141 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
289171 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
289196 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:290173 original size:5 final size:5
Alignment explanation
Indices: 290147--290194 Score: 51
Period size: 5 Copynumber: 8.8 Consensus size: 5
290137 ATGTGTTAAA
*
290147 ATATAT ATATT AAATT ATTATT ATATT ATATTAT ATATT ATATT ATAT
1 ATAT-T ATATT ATATT A-TATT ATATT ATA-T-T ATATT ATATT ATAT
290195 AAATAAGTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
5 23 0.62
6 10 0.27
7 4 0.11
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:290185 original size:12 final size:12
Alignment explanation
Indices: 290162--290195 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
290152 TATATTAAAT
290162 TATTATTATATTA
1 TATTA-TATATTA
290175 TATTATATATTA
1 TATTATATATTA
290187 TATTATATA
1 TATTATATA
290196 AATAAGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATATATTA
Found at i:291535 original size:18 final size:19
Alignment explanation
Indices: 291509--291547 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
291499 ATATATAGAT
*
291509 ATATTTATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
291527 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
291546 AT
1 AT
291548 TGAATTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.51
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:291897 original size:39 final size:39
Alignment explanation
Indices: 291787--291921 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
291777 GACCTCGAGT
* * * *
291787 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
291828 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
291866 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
291905 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
291922 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:292067 original size:18 final size:19
Alignment explanation
Indices: 292044--292084 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
292034 AATGAAATGA
292044 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
292062 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
292081 GAAA
1 GAAA
292085 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:292082 original size:13 final size:13
Alignment explanation
Indices: 292032--292071 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
292022 TTGAGCTATT
292032 AGAA-TGAAA-TG
1 AGAATTGAAATTG
292043 AGAAATTG-AATTG
1 AG-AATTGAAATTG
292056 AGAATTGAAATTG
1 AGAATTGAAATTG
292069 AGA
1 AGA
292072 TATGAGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.08
12 9 0.36
13 14 0.56
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (13 bp):
AGAATTGAAATTG
Found at i:303872 original size:32 final size:33
Alignment explanation
Indices: 303836--303903 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
303826 TTTAGAAATT
303836 TATTTTA-AGAAAATTCATC-AAACAACAGAAAA
1 TATTTTATAGAAAA-TCATCTAAACAACAGAAAA
* *
303868 TATTTTATATAAAATCATCTAAACATCAGAAAA
1 TATTTTATAGAAAATCATCTAAACAACAGAAAA
303901 TAT
1 TAT
303904 CAACTATTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.53, C:0.12, G:0.04, T:0.31
Consensus pattern (33 bp):
TATTTTATAGAAAATCATCTAAACAACAGAAAA
Found at i:305519 original size:18 final size:18
Alignment explanation
Indices: 305493--305572 Score: 133
Period size: 18 Copynumber: 4.4 Consensus size: 18
305483 GGGAATACGA
*
305493 ACGTTTACGGTACTATTC
1 ACGTATACGGTACTATTC
305511 ACGTATACGGTACTATTC
1 ACGTATACGGTACTATTC
*
305529 ACGTATACGGCACTATTC
1 ACGTATACGGTACTATTC
*
305547 ACGTATACGGTACTGTTC
1 ACGTATACGGTACTATTC
305565 ACGTATAC
1 ACGTATAC
305573 AGTAGTTGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 58 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (18 bp):
ACGTATACGGTACTATTC
Found at i:314384 original size:18 final size:18
Alignment explanation
Indices: 314361--314397 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
314351 TGAGTCACAC
314361 GCTTGTGTGCCAGGCCAT
1 GCTTGTGTGCCAGGCCAT
*
314379 GCTTGTGTGTCAGGCCAT
1 GCTTGTGTGCCAGGCCAT
314397 G
1 G
314398 TGAGCCACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.24, G:0.35, T:0.30
Consensus pattern (18 bp):
GCTTGTGTGCCAGGCCAT
Found at i:314918 original size:13 final size:15
Alignment explanation
Indices: 314900--314931 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
314890 TCTTTCCCTA
314900 TTTTTCA-TG-TTCT
1 TTTTTCATTGTTTCT
314913 TTTTTCATTGTTTCT
1 TTTTTCATTGTTTCT
314928 TTTT
1 TTTT
314932 GTTTTCTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.06, C:0.12, G:0.06, T:0.75
Consensus pattern (15 bp):
TTTTTCATTGTTTCT
Found at i:322251 original size:70 final size:70
Alignment explanation
Indices: 322168--322303 Score: 213
Period size: 70 Copynumber: 1.9 Consensus size: 70
322158 TACAATGAGC
* *
322168 AATTTTTAACAATAGAAATTA-ATGAAATTTTTAACAGAAGGGCTT-ATTTACTCTTTTATCTAA
1 AATTTTTAACAATAGAAA-TAGATAAAATTTTTAACAGAAAGG-TTAATTTACTCTTTTATCTAA
322231 CATGCCT
64 CATGCCT
*
322238 AATTTTTAACAATAGAAATAGATAAAATTTTTAACAGAAAGGTTAATTTGCTCTTTTATCTAACA
1 AATTTTTAACAATAGAAATAGATAAAATTTTTAACAGAAAGGTTAATTTACTCTTTTATCTAACA
322303 T
66 T
322304 ATTTAGTATT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
69 4 0.07
70 57 0.93
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.40
Consensus pattern (70 bp):
AATTTTTAACAATAGAAATAGATAAAATTTTTAACAGAAAGGTTAATTTACTCTTTTATCTAACA
TGCCT
Found at i:338177 original size:18 final size:18
Alignment explanation
Indices: 338156--338190 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
338146 TGAATTTTTT
*
338156 TTTAATTTAGCATTTAAA
1 TTTAATTTAACATTTAAA
*
338174 TTTATTTTAACATTTAA
1 TTTAATTTAACATTTAA
338191 TTTGATACTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTAATTTAACATTTAAA
Found at i:347480 original size:21 final size:21
Alignment explanation
Indices: 347454--347494 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
347444 AGACAAGCGA
* *
347454 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
347475 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
347495 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:349651 original size:46 final size:46
Alignment explanation
Indices: 349591--350070 Score: 641
Period size: 46 Copynumber: 11.0 Consensus size: 46
349581 TTTGACATGA
* * * * * *
349591 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *** *
349637 TGCCATGGTATCTTTCAACCATGGTATTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
349683 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
349729 TGCCATGGTATTTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
349775 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
349813 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
349859 TGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
349905 TGCCATGGTATCTTTCAACCATGGTCTTACAC---TC--A--A-GT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
349943 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
349989 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
350027 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
350071 AGAGCACACT
Statistics
Matches: 388, Mismatches: 21, Indels: 50
0.85 0.05 0.11
Matches are distributed among these distances:
38 102 0.26
39 1 0.00
40 6 0.02
41 4 0.01
43 5 0.01
44 6 0.02
45 5 0.01
46 259 0.67
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:349867 original size:130 final size:130
Alignment explanation
Indices: 349591--350058 Score: 673
Period size: 130 Copynumber: 3.6 Consensus size: 130
349581 TTTGACATGA
* * * * * * *
349591 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAAC
* * *
349656 CATGGTATTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CAT-G----G-TC-TTACA-CTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
349721 TATCAGAT
123 TATCAGGT
*
349729 TGCCATGGTATTTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAAC
*
349794 CATGGTCTTACACTCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTACACTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
349859 TGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAAC
349924 CATGGTCTTACACTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTACACTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
349989 TGCCATGGTATCTTTCAACCATGGTCTTACAC--------TCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAAC
350046 CATGGTCTTACAC
66 CATGGTCTTACAC
350059 ATTTCATATC
Statistics
Matches: 313, Mismatches: 17, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
122 38 0.12
130 207 0.66
131 4 0.01
132 2 0.01
133 1 0.00
137 1 0.00
138 60 0.19
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.38
Consensus pattern (130 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:349869 original size:84 final size:82
Alignment explanation
Indices: 349635--350057 Score: 427
Period size: 84 Copynumber: 4.9 Consensus size: 82
349625 TTTCTGTCAT
* * *
349635 GTTGCCATGGTATCTTTCAACCATGGTATTGTTCATTTCAT-ATCACGTTGCCATGGTATCTTTC
1 GTTGCCATGGTATCTTTCAACCATGGT-CT-TACA---CATCATCAGGTTGCCATGGTATCTTTC
349699 AACCATGGTCTTACACATTTCATATCAG
61 AACCATGGTCTT--ACA--TC--ATCAG
* * *
349727 ATTGCCATGGTATTTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA---T-CATCAGGTTGCCATGGTATCTTTCA
349792 ACCATGGTCTTACA-C-TCAG
62 ACCATGGTCTTACATCATCAG
349811 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA--TC--ATCAGGTTGCCATGGTATCTTTCA
*
349876 ACCATGGTCTCACACATTTCATATCAG
62 ACCATGGTCT--TACA--TC--ATCAG
349903 GTTGCCATGGTATCTTTCAACCATGGTCTTACAC-TCA--A-GTTGCCATGGTATCTTTCAACCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCATCAGGTTGCCATGGTATCTTTCAACCA
349964 TGGTCTTACACATTTCATATCAG
66 TGGTCTT--ACA--TC--ATCAG
349987 GTTGCCATGGTATCTTTCAACCATGGTCTT--ACA-C-TCAGGTTGCCATGGTATCTTTCAACCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCATCAGGTTGCCATGGTATCTTTCAACCA
350048 TGGTCTTACA
66 TGGTCTTACA
350058 CATTTCATAT
Statistics
Matches: 300, Mismatches: 10, Indels: 52
0.83 0.03 0.14
Matches are distributed among these distances:
82 6 0.02
83 4 0.01
84 174 0.58
85 1 0.00
86 3 0.01
87 4 0.01
89 3 0.01
90 7 0.02
91 1 0.00
92 97 0.32
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (82 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCATCAGGTTGCCATGGTATCTTTCAACCA
TGGTCTTACATCATCAG
Found at i:353023 original size:30 final size:30
Alignment explanation
Indices: 352987--353046 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
352977 TTCCCGAGCC
*
352987 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGAAAAAGTT
*
353017 TAGGGGCAAAATGGTAATTTTGAAAAAGTT
1 TAGGGGCAAAATGGTAATTATGAAAAAGTT
353047 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.40, C:0.05, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGAAAAAGTT
Found at i:353519 original size:47 final size:47
Alignment explanation
Indices: 353468--353644 Score: 202
Period size: 47 Copynumber: 3.8 Consensus size: 47
353458 TGGTTGAACA
*
353468 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
* * * *
353515 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGT-AACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA--A--CG
* *
353562 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCG-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
* *
353608 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
353645 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
43 2 0.02
44 4 0.04
45 1 0.01
46 37 0.34
47 57 0.53
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
Found at i:359867 original size:73 final size:73
Alignment explanation
Indices: 359748--359893 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
359738 CATGTTACTT
359748 TTACCATTCCTAGGTTCATATGAACATCTTTTATGTTCATTGTTACTGTTATTCTTATTGAAAGT
1 TTACCATTCCTAGGTTCATATGAACATCTTTTATGTTCATTGTTACTGTTATTCTTATTGAAAGT
359813 ACAATAAA
66 ACAATAAA
359821 TTACCATTCCTAGGTTCATATGAACATCTTTTATGTTCATTGTTACTGTTATTCTTATTGAAAGT
1 TTACCATTCCTAGGTTCATATGAACATCTTTTATGTTCATTGTTACTGTTATTCTTATTGAAAGT
359886 ACAATAAA
66 ACAATAAA
359894 CATTTTAATA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (73 bp):
TTACCATTCCTAGGTTCATATGAACATCTTTTATGTTCATTGTTACTGTTATTCTTATTGAAAGT
ACAATAAA
Found at i:370084 original size:3 final size:3
Alignment explanation
Indices: 370076--370107 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
370066 GTACTTGTAA
370076 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
370108 ATTTACATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:370546 original size:19 final size:19
Alignment explanation
Indices: 370514--370551 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
370504 AATAAAATTT
*
370514 AAATAATAATTTATTGTTTG
1 AAATAATAAGTTATT-TTTG
370534 AAAT-ATAAGTTATTTTTG
1 AAATAATAAGTTATTTTTG
370552 CTCTGATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 9 0.53
20 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (19 bp):
AAATAATAAGTTATTTTTG
Found at i:371965 original size:15 final size:15
Alignment explanation
Indices: 371945--371973 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
371935 TGGTTTTTGG
371945 GTGAAGCATGCTGAC
1 GTGAAGCATGCTGAC
371960 GTGAAGCATGCTGA
1 GTGAAGCATGCTGA
371974 GACAGGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.17, G:0.34, T:0.21
Consensus pattern (15 bp):
GTGAAGCATGCTGAC
Found at i:377205 original size:15 final size:15
Alignment explanation
Indices: 377185--377213 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
377175 GTGAAATAAA
377185 CTGAAATAATAAAAG
1 CTGAAATAATAAAAG
377200 CTGAAATAATAAAA
1 CTGAAATAATAAAA
377214 TATTGTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.07, G:0.10, T:0.21
Consensus pattern (15 bp):
CTGAAATAATAAAAG
Found at i:378706 original size:22 final size:18
Alignment explanation
Indices: 378662--378703 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
378652 AATTTTAGGT
378662 CAATTATACATACACCAA
1 CAATTATACATACACCAA
378680 CAATTATACATACACCAA
1 CAATTATACATACACCAA
378698 CAATTA
1 CAATTA
378704 ATTTTAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (18 bp):
CAATTATACATACACCAA
Found at i:378730 original size:51 final size:51
Alignment explanation
Indices: 378636--378736 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
378626 CTTGAAGTAC
* * * * *
378636 ACATATACCAACAATTAATTTTAGGTCAATTATACATACACCAACAATTAT
1 ACATACACCAACAATTAATTTTAGGTCAAATAAAAATAAACCAACAATTAT
*
378687 ACATACACCAACAATTAATTTTAGGGT-AAATAAAAATAAACCAAGAATTA
1 ACATACACCAACAATTAATTTTA-GGTCAAATAAAAATAAACCAACAATTA
378737 ATTTTAGGTC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 40 0.93
52 3 0.07
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (51 bp):
ACATACACCAACAATTAATTTTAGGTCAAATAAAAATAAACCAACAATTAT
Found at i:378769 original size:33 final size:33
Alignment explanation
Indices: 378680--378789 Score: 150
Period size: 33 Copynumber: 3.3 Consensus size: 33
378670 CATACACCAA
378680 CAATTATACATACACCAACAATTAATTTTAGGGT
1 CAATTATACATACACCAACAATTAATTTTA-GGT
* * * * *
378714 -AAATAAAAATAAACCAAGAATTAATTTTAGGT
1 CAATTATACATACACCAACAATTAATTTTAGGT
*
378746 CAATTATACATACACAAACAATTAATTTTAGGT
1 CAATTATACATACACCAACAATTAATTTTAGGT
378779 CAATTATACAT
1 CAATTATACAT
378790 GCTTTATAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
32 3 0.05
33 61 0.95
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (33 bp):
CAATTATACATACACCAACAATTAATTTTAGGT
Found at i:382016 original size:120 final size:120
Alignment explanation
Indices: 381819--382801 Score: 1867
Period size: 120 Copynumber: 8.2 Consensus size: 120
381809 TTTTCAAGTT
*
381819 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
381884 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
381939 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
382004 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
382059 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
382124 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
382179 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
382244 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
382299 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
382364 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
382419 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
382484 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
382539 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
382604 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
382659 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
382724 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
382779 ATATAGTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
382802 TAAATATGAT
Statistics
Matches: 852, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 852 1.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:382658 original size:18 final size:17
Alignment explanation
Indices: 382630--382664 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
382620 ATTATTAAGA
*
382630 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
382647 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
382665 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:382770 original size:17 final size:18
Alignment explanation
Indices: 382750--382783 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
382740 ATTATTAAGA
*
382750 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAAATATAT
382767 ATTTTAATTAAAATATA
1 ATTTTAATTAAAATATA
382784 GTTAATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTTAATTAAAATATAT
Found at i:383014 original size:44 final size:45
Alignment explanation
Indices: 382949--383039 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
382939 ACCTCTATTC
* * *
382949 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
382993 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
383038 CA
1 CA
383040 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:383041 original size:16 final size:16
Alignment explanation
Indices: 383020--383088 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
383010 GATTAGCTAT
383020 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
383036 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
383053 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
*
383069 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
383085 TACA
1 TACA
383089 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 33 0.69
17 15 0.31
ACGTcount: A:0.36, C:0.36, G:0.01, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:383067 original size:33 final size:32
Alignment explanation
Indices: 383020--383088 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
383010 GATTAGCTAT
383020 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
* *
383053 TACATCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
383085 TACA
1 TACA
383089 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 8 0.24
33 26 0.76
ACGTcount: A:0.36, C:0.36, G:0.01, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:386334 original size:18 final size:18
Alignment explanation
Indices: 386299--386335 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
386289 TTCTTCTTAC
* *
386299 GACCCACCACTTTGGAAA
1 GACCCACCACATTAGAAA
386317 GACCCACCACATTAGAAA
1 GACCCACCACATTAGAAA
386335 G
1 G
386336 TCCAAGATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.32, G:0.16, T:0.14
Consensus pattern (18 bp):
GACCCACCACATTAGAAA
Found at i:394908 original size:45 final size:45
Alignment explanation
Indices: 394839--394926 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
394829 ATAAGTGTGC
* *
394839 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGACT
*
394884 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGA
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGA
394927 TAATGTGATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (45 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGACT
Found at i:394957 original size:53 final size:55
Alignment explanation
Indices: 394875--394981 Score: 157
Period size: 53 Copynumber: 2.0 Consensus size: 55
394865 GCATCGGTGC
*
394875 AATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT-A-ATGTGAT
1 AATGTGACTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATGATATGTGAT
* *
394928 AATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 AATGTGACTCCGTATAAGACCATAG-CTGGGATATGGCATCGGTATGATATGTGA
394982 ACCGTGTAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
52 1 0.02
53 40 0.83
54 1 0.02
55 6 0.12
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (55 bp):
AATGTGACTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATGATATGTGAT
Found at i:402430 original size:45 final size:45
Alignment explanation
Indices: 402345--402432 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
402335 ATAAGTGTGC
* *
402345 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGACT
* *
402390 CCGTATAAGACCATAGCTGGGCTATGGCATCGTTATAATGTGA
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGA
402433 TAATGTGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (45 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGACT
Found at i:405101 original size:20 final size:18
Alignment explanation
Indices: 405065--405109 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
405055 AAACCTTGAA
405065 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
405083 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
405103 -TTTCCCT
1 TTTTCCCT
405110 GCTTTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 10 0.40
20 7 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:405343 original size:20 final size:20
Alignment explanation
Indices: 405320--405359 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
405310 TATAATTATT
405320 TAATTAATAAATATCTTTTA
1 TAATTAATAAATATCTTTTA
405340 TAATTAATAAATATCTTTTA
1 TAATTAATAAATATCTTTTA
405360 ATACTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTAATAAATATCTTTTA
Found at i:422934 original size:27 final size:27
Alignment explanation
Indices: 422883--422935 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
422873 GTTTTAACTT
*
422883 AAATTTAAAATTCAACTTAATTAATTC
1 AAATTTAAAATTCAACTCAATTAATTC
422910 AAATTT-AAATTCGAA-TCAATCTAATT
1 AAATTTAAAATTC-AACTCAAT-TAATT
422936 TGGTCCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (27 bp):
AAATTTAAAATTCAACTCAATTAATTC
Found at i:426598 original size:31 final size:31
Alignment explanation
Indices: 426563--426622 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
426553 ATTTTAGACC
** *
426563 CCAATATGGGAACAATTACCATGTTCAAGCA
1 CCAATATAAGAACAATTACCAAGTTCAAGCA
*
426594 CCAATATAAGAACAATTATCAAGTTCAAG
1 CCAATATAAGAACAATTACCAAGTTCAAG
426623 ACTAATTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.23
Consensus pattern (31 bp):
CCAATATAAGAACAATTACCAAGTTCAAGCA
Found at i:428791 original size:26 final size:25
Alignment explanation
Indices: 428762--428826 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
428752 AAAAATAAGT
428762 GTATATGTATATATATAGTACAAAAA
1 GTATATGTATATATATA-TACAAAAA
*
428788 GTATGCATGTA-A-ATATATAGAAAAA
1 GTAT--ATGTATATATATATACAAAAA
*
428813 -TATATTTATATATA
1 GTATATGTATATATA
428827 AAAGAAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
22 4 0.12
23 1 0.03
24 6 0.18
25 7 0.21
26 9 0.27
27 1 0.03
28 5 0.15
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.37
Consensus pattern (25 bp):
GTATATGTATATATATATACAAAAA
Found at i:429876 original size:20 final size:20
Alignment explanation
Indices: 429840--429879 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
429830 TCCTATTGTT
429840 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
429860 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
429880 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:430662 original size:44 final size:43
Alignment explanation
Indices: 430358--430646 Score: 202
Period size: 44 Copynumber: 6.7 Consensus size: 43
430348 TTTAAGTCTA
* * *
430358 CTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCCG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTCTT-CTTTGATCTG
* * * * *
430402 CCCCACTGTAA-CTTCAGGGAGATAGGATAGT-GTCTTCGATCTG
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-CTCTTCTTTGATCTG
* * *
430445 CTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCT---CTTCTTTGATCTG
* ** * *
430491 TTCCACTGTAATCTCAGGGAGATAAGA-C-CTGATGTGATCTT
1 CTCCACTGTAATCTCAGGGAGATAAGATCTCTTCTTTGATCTG
* * * * *
430532 CTCTATTGTAA-CTTCAGAGAGATAAGA--TC--CTTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTCTTCTTTGATCTG
* * *
430571 CTCCATTGTAATCTCAAGGAGATAGGAT-TACTATCTTTGATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCT-CT-TCTTTGATCTG
*
430615 CTCCGCTGTAATCTCAGGGAGATAAGATCTCT
1 CTCCACTGTAATCTCAGGGAGATAAGATCTCT
430647 GGCTTCAATC
Statistics
Matches: 187, Mismatches: 42, Indels: 32
0.72 0.16 0.12
Matches are distributed among these distances:
39 26 0.14
40 3 0.02
41 30 0.16
42 1 0.01
43 30 0.16
44 60 0.32
45 3 0.02
46 34 0.18
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.32
Consensus pattern (43 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCTCTTCTTTGATCTG
Found at i:430708 original size:86 final size:85
Alignment explanation
Indices: 430604--431160 Score: 348
Period size: 88 Copynumber: 6.5 Consensus size: 85
430594 AGGATTACTA
* * * *
430604 TCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCT-GCTCCAATG
1 TCTTTGATCTGCTTCGCTGTAAT-GCAGGAAGACAAGATCTGCT-GCTTCAA-CTAGCTCCAATG
430667 CAACCGATGGAGGCAAGGCTTTG
63 CAACCGATGGAGGCAAGGCTTTG
* * * *
430690 TCTTTGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTTCTTTAACTAGCTCCACTGCA
1 TCTTTGATCTGCTTCGCTG-TAATGCAGGAAGACAAGATCTGCTGCTTCAACTAGCTCCAATGCA
* *
430755 ATCGATGGATGCAAGGCTTTG
65 ACCGATGGAGGCAAGGCTTTG
* * * * *
430776 T-TTTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCT-TTGTCTTCAACCAGCT-CTAT-
1 TCTTT-GATCTGCTTCGCTG-TAATGCAGGAAGACAAGATCTGCTG-CTTCAACTAGCTCCAATG
**
430837 CAA-CGAAAGAGGC-AGG-TTTG
63 CAACCGATGGAGGCAAGGCTTTG
* * * ** * * *
430857 T-TTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCT-CTATCA
1 TCTTTGATCTGCTTCGCTGT-AATGCAGGAAGACAAGATCTGCTG-CTTCAACTAGCTCCAAT-G
* ** *
430920 CAATCGAAAGAGGCAAGGTTTGTG
63 CAACCGATGGAGGCAAGGCTT-TG
* * * ** * * *
430944 TCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCT-CTATCA
1 TCTTTGATCTGCTTCGCTGT-AATGCAGGAAGACAAGATCTGCTG-CTTCAACTAGCTCCAAT-G
** *
431008 CAACCGAAAGAGGCAAGGTTTGTG
63 CAACCGATGGAGGCAAGGCTT-TG
* * * ** * * *
431032 TCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCT-CTATCA
1 TCTTTGATCTGCTTCGCTGT-AATGCAGGAAGACAAGATCTGCTG-CTTCAACTAGCTCCAAT-G
** *
431096 CAACCGAAAGAGGCAAGGTTTGTG
63 CAACCGATGGAGGCAAGGCTT-TG
* * * *
431120 TCTTCGATTTGCTTCGCTGTCAATGTAGGAAGGCAAGATCT
1 TCTTTGATCTGCTTCGCTGT-AATGCAGGAAGACAAGATCT
431161 TTTGTCTTCA
Statistics
Matches: 434, Mismatches: 23, Indels: 26
0.90 0.05 0.05
Matches are distributed among these distances:
79 1 0.00
80 34 0.08
81 27 0.06
82 3 0.01
83 10 0.02
84 13 0.03
85 11 0.03
86 113 0.26
87 9 0.02
88 213 0.49
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (85 bp):
TCTTTGATCTGCTTCGCTGTAATGCAGGAAGACAAGATCTGCTGCTTCAACTAGCTCCAATGCAA
CCGATGGAGGCAAGGCTTTG
Found at i:430726 original size:43 final size:43
Alignment explanation
Indices: 430677--430823 Score: 108
Period size: 43 Copynumber: 3.4 Consensus size: 43
430667 CAACCGATGG
430677 AGGCAAGGCTTTGTCTTTGATCTGCTTCGCTGTTAATGCAGGA
1 AGGCAAGGCTTTGTCTTTGATCTGCTTCGCTGTTAATGCAGGA
* * * * * *
430720 AGGCAA-GATCTGCTTCTTT-AACTAGCTCCACTG-CAAT-CGATGG-
1 AGGCAAGGCTTTG--TCTTTGATCT-GCTTCGCTGTTAATGC-A-GGA
* *
430763 ATGCAAGGCTTTGT-TTTCGATCTGCTTCGCTGTTAATGTAGGA
1 AGGCAAGGCTTTGTCTTT-GATCTGCTTCGCTGTTAATGCAGGA
*
430806 AGGCAAGATCTTTGTCTT
1 AGGCAAG-GCTTTGTCTT
430824 CAACCAGCTC
Statistics
Matches: 75, Mismatches: 16, Indels: 24
0.65 0.14 0.21
Matches are distributed among these distances:
41 3 0.04
42 15 0.20
43 31 0.41
44 24 0.32
45 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (43 bp):
AGGCAAGGCTTTGTCTTTGATCTGCTTCGCTGTTAATGCAGGA
Done.