Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 10 of 295
Found at i:3073550 original size:20 final size:19
Alignment explanation
Indices: 3073522--3073561 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
3073512 CATTAGGAAC
* *
3073522 ATCATATTATTATTCTAAAT
1 ATCACATTATCATT-TAAAT
3073542 ATCACATTATCATTTAAAT
1 ATCACATTATCATTTAAAT
3073561 A
1 A
3073562 CACTTGTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (19 bp):
ATCACATTATCATTTAAAT
Found at i:3074398 original size:12 final size:12
Alignment explanation
Indices: 3074381--3074405 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3074371 AAATGCTATG
3074381 TCATAAGGCATA
1 TCATAAGGCATA
3074393 TCATAAGGCATA
1 TCATAAGGCATA
3074405 T
1 T
3074406 ATCTCCATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TCATAAGGCATA
Found at i:3076951 original size:2 final size:2
Alignment explanation
Indices: 3076944--3076974 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3076934 CTGACTCCCT
3076944 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
3076975 GTGTTGGGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:3086339 original size:20 final size:21
Alignment explanation
Indices: 3086300--3086358 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 21
3086290 TTTTTTATCT
*
3086300 TTTTATTATTTAATTAAATTTA
1 TTTTA-TATTTTATTAAATTTA
3086322 TTTTATATTTTA-TAAATTTA
1 TTTTATATTTTATTAAATTTA
*
3086342 TATTT-TATTTTTTTAAA
1 T-TTTATATTTTATTAAA
3086359 CAAATATGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 15 0.45
21 13 0.39
22 5 0.15
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTATATTTTATTAAATTTA
Found at i:3094740 original size:13 final size:13
Alignment explanation
Indices: 3094722--3094755 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
3094712 TTCCCTGTAA
3094722 AATAGTAAAAAAT
1 AATAGTAAAAAAT
3094735 AATAGT-AAAAAT
1 AATAGTAAAAAAT
3094747 AATAG-AAAA
1 AATAGTAAAA
3094756 GGGGAAGTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (13 bp):
AATAGTAAAAAAT
Found at i:3094932 original size:17 final size:18
Alignment explanation
Indices: 3094912--3094945 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
3094902 AAGTGAATTG
3094912 AAATTGCA-AAATTAAAT
1 AAATTGCAGAAATTAAAT
3094929 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
3094946 ATGAGGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:3095788 original size:14 final size:14
Alignment explanation
Indices: 3095762--3095812 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
3095752 GAAAACAAAA
3095762 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
3095776 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
3095790 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
3095805 G-AATAAAA
1 GAAATAAAA
3095813 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:3095823 original size:17 final size:16
Alignment explanation
Indices: 3095801--3095834 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3095791 AAGTTAAAAT
3095801 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
3095818 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
3095834 A
1 A
3095835 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:3096983 original size:37 final size:39
Alignment explanation
Indices: 3096924--3097019 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
3096914 CGGATAGATT
* * * *
3096924 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
3096961 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
3097000 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
3097020 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:3101443 original size:14 final size:17
Alignment explanation
Indices: 3101412--3101448 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
3101402 ATTATAAAGG
3101412 ATATTATTAAATTAATT
1 ATATTATTAAATTAATT
3101429 ATATTA-TAAA-T-ATT
1 ATATTATTAAATTAATT
3101443 ATATTA
1 ATATTA
3101449 AGAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 4 0.20
17 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTATTAAATTAATT
Found at i:3101624 original size:14 final size:14
Alignment explanation
Indices: 3101598--3101648 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
3101588 GAAAACAAAA
3101598 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
3101612 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
3101626 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
3101641 G-AATAAAA
1 GAAATAAAA
3101649 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:3101659 original size:17 final size:16
Alignment explanation
Indices: 3101637--3101670 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3101627 AAGTTAAAAT
3101637 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
3101654 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
3101670 A
1 A
3101671 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:3102830 original size:37 final size:39
Alignment explanation
Indices: 3102771--3102866 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
3102761 CGGATAGATT
* * * *
3102771 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
3102808 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
3102847 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
3102867 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:3117304 original size:19 final size:18
Alignment explanation
Indices: 3117280--3117317 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
3117270 TTTTTTATCT
3117280 TTTATATTAATTAAATTTA
1 TTTATATTAA-TAAATTTA
*
3117299 TTTATATTTATAAATTTA
1 TTTATATTAATAAATTTA
3117317 T
1 T
3117318 ATTTTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTATATTAATAAATTTA
Found at i:3117332 original size:20 final size:18
Alignment explanation
Indices: 3117280--3117328 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
3117270 TTTTTTATCT
*
3117280 TTTATATTAATTAAATTTA
1 TTTATATT-TTTAAATTTA
*
3117299 TTTATATTTATAAATTTA
1 TTTATATTTTTAAATTTA
*
3117317 TATTTTATTTTT
1 T-TTATATTTTT
3117329 TAAACAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTATATTTTTAAATTTA
Found at i:3117975 original size:8 final size:8
Alignment explanation
Indices: 3117964--3118036 Score: 51
Period size: 8 Copynumber: 8.5 Consensus size: 8
3117954 TGTTTTAATT
3117964 TTTTATAA
1 TTTTATAA
3117972 TTTTGGATAA
1 TTTT--ATAA
*
3117982 TTCTATAA
1 TTTTATAA
3117990 TTTTAT-A
1 TTTTATAA
3117997 TTTTATAA
1 TTTTATAA
*
3118005 CATTTA-AA
1 -TTTTATAA
3118013 CTTTTTATAA
1 --TTTTATAA
3118023 TTCTTAGTAA
1 TT-TTA-TAA
3118033 TTTT
1 TTTT
3118037 TTAAGTATTT
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
7 7 0.13
8 18 0.35
9 13 0.25
10 14 0.27
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (8 bp):
TTTTATAA
Found at i:3125566 original size:13 final size:13
Alignment explanation
Indices: 3125548--3125581 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
3125538 TTCCCTGTAA
3125548 AATAGTAAAAAAT
1 AATAGTAAAAAAT
3125561 AATAGT-AAAAAT
1 AATAGTAAAAAAT
3125573 AATAG-AAAA
1 AATAGTAAAA
3125582 GGGGAAGTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (13 bp):
AATAGTAAAAAAT
Found at i:3125758 original size:17 final size:18
Alignment explanation
Indices: 3125738--3125771 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
3125728 AAGTGAATTG
3125738 AAATTGCA-AAATTAAAT
1 AAATTGCAGAAATTAAAT
3125755 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
3125772 ATGAGGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:3126615 original size:14 final size:14
Alignment explanation
Indices: 3126589--3126639 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
3126579 GAAAACAAAA
3126589 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
3126603 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
3126617 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
3126632 G-AATAAAA
1 GAAATAAAA
3126640 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:3126650 original size:17 final size:16
Alignment explanation
Indices: 3126628--3126661 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3126618 AAGTTAAAAT
3126628 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
3126645 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
3126661 A
1 A
3126662 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:3127570 original size:23 final size:27
Alignment explanation
Indices: 3127544--3127611 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
3127534 GTGAATTTGT
*
3127544 GAAATAATTATTG-ATT-AAA-TGTG-
1 GAAATAATGATTGAATTGAAAGTGTGA
3127567 GAAA-AATGATTGAATTGAAAGTGTGA
1 GAAATAATGATTGAATTGAAAGTGTGA
**
3127593 GAAATTGTGATTGAATTGA
1 GAAATAATGATTGAATTGA
3127612 GAATATATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 7 0.19
23 7 0.19
24 3 0.08
25 4 0.11
26 4 0.11
27 12 0.32
ACGTcount: A:0.43, C:0.00, G:0.24, T:0.34
Consensus pattern (27 bp):
GAAATAATGATTGAATTGAAAGTGTGA
Found at i:3127814 original size:37 final size:39
Alignment explanation
Indices: 3127755--3127850 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
3127745 CGGATAGATT
* * * *
3127755 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
3127792 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
3127831 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
3127851 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:3132467 original size:14 final size:14
Alignment explanation
Indices: 3132441--3132491 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
3132431 GAAAACAAAA
3132441 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
3132455 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
3132469 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
3132484 G-AATAAAA
1 GAAATAAAA
3132492 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:3132502 original size:17 final size:16
Alignment explanation
Indices: 3132480--3132513 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3132470 AAGTTAAAAT
3132480 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
3132497 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
3132513 A
1 A
3132514 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:3133423 original size:23 final size:27
Alignment explanation
Indices: 3133397--3133464 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
3133387 GTGAATTTGT
*
3133397 GAAATAATTATTG-ATT-AAA-TGTG-
1 GAAATAATGATTGAATTGAAAGTGTGA
3133420 GAAA-AATGATTGAATTGAAAGTGTGA
1 GAAATAATGATTGAATTGAAAGTGTGA
**
3133446 GAAATTGTGATTGAATTGA
1 GAAATAATGATTGAATTGA
3133465 GAATATATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 7 0.19
23 7 0.19
24 3 0.08
25 4 0.11
26 4 0.11
27 12 0.32
ACGTcount: A:0.43, C:0.00, G:0.24, T:0.34
Consensus pattern (27 bp):
GAAATAATGATTGAATTGAAAGTGTGA
Found at i:3133667 original size:37 final size:39
Alignment explanation
Indices: 3133608--3133703 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
3133598 CGGATAGATT
* * * *
3133608 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
3133645 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
3133684 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
3133704 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:3135007 original size:10 final size:10
Alignment explanation
Indices: 3134988--3135037 Score: 75
Period size: 10 Copynumber: 5.0 Consensus size: 10
3134978 TGAAATTCTA
3134988 AAAGATAAAT
1 AAAGATAAAT
3134998 ACAA-ATAAAT
1 A-AAGATAAAT
*
3135008 AAAGATAATT
1 AAAGATAAAT
3135018 AAAGATAAAT
1 AAAGATAAAT
3135028 AAAGATAAAT
1 AAAGATAAAT
3135038 GAAAATTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 32 0.89
11 2 0.06
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:3135585 original size:59 final size:59
Alignment explanation
Indices: 3135514--3135632 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
3135504 ATTGACAATG
3135514 TAATGGGGTGATGGTACAAATAATTGGAAGGTTGACCAACCCAATAATTTTATATTTCT
1 TAATGGGGTGATGGTACAAATAATTGGAAGGTTGACCAACCCAATAATTTTATATTTCT
3135573 TAATGGGGTGATGGTACAAATAATTGGAAGGTTGACCAACCCAATAATTTTATATTTCT
1 TAATGGGGTGATGGTACAAATAATTGGAAGGTTGACCAACCCAATAATTTTATATTTCT
3135632 T
1 T
3135633 TTTATCTTTG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (59 bp):
TAATGGGGTGATGGTACAAATAATTGGAAGGTTGACCAACCCAATAATTTTATATTTCT
Found at i:3152835 original size:39 final size:39
Alignment explanation
Indices: 3152790--3152866 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
3152780 TGAGGTGATA
* *
3152790 TAAAAATGGAGGACTAAATAATTTATTCTACTTAAAATG
1 TAAAAATGGAGGACTAAATAAGTTATTCTACCTAAAATG
3152829 TAAAAATGGAGGACTAAATAAGTTATTCTACCTAAAAT
1 TAAAAATGGAGGACTAAATAAGTTATTCTACCTAAAAT
3152867 TTTAAAAGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.31
Consensus pattern (39 bp):
TAAAAATGGAGGACTAAATAAGTTATTCTACCTAAAATG
Found at i:3153290 original size:9 final size:9
Alignment explanation
Indices: 3153276--3153323 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
3153266 ATTTGATCTT
3153276 AATTTTAAA
1 AATTTTAAA
3153285 AATTTTAAA
1 AATTTTAAA
3153294 AA-TTTAAA
1 AATTTTAAA
*
3153302 AATATATAAA
1 AAT-TTTAAA
*
3153312 TATTTTCAAA
1 AATTTT-AAA
3153322 AA
1 AA
3153324 ATATAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
8 8 0.25
9 13 0.41
10 11 0.34
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (9 bp):
AATTTTAAA
Found at i:3153370 original size:25 final size:24
Alignment explanation
Indices: 3153328--3153378 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
3153318 CAAAAAATAT
3153328 AATAATAAATTAAGATTAAATAAA
1 AATAATAAATTAAGATTAAATAAA
* *
3153352 AATAATTATATTAATATTAAATAAA
1 AATAA-TAAATTAAGATTAAATAAA
3153377 AA
1 AA
3153379 AAACCCTCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (24 bp):
AATAATAAATTAAGATTAAATAAA
Found at i:3153381 original size:29 final size:29
Alignment explanation
Indices: 3153319--3153381 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
3153309 AAATATTTTC
3153319 AAAAAATATAATAATAAATTAAGATTAAA
1 AAAAAATATAATAATAAATTAAGATTAAA
* * *
3153348 TAAAAATAATTATATTAATATTAA-A-TAAA
1 AAAAAAT-ATAATAATAA-ATTAAGATTAAA
3153377 AAAAA
1 AAAAA
3153382 CCCTCTCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
29 14 0.50
30 9 0.32
31 5 0.18
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (29 bp):
AAAAAATATAATAATAAATTAAGATTAAA
Found at i:3161450 original size:15 final size:17
Alignment explanation
Indices: 3161430--3161462 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
3161420 TCGAAAACCC
3161430 TTTTAA-AAATAA-TTA
1 TTTTAAGAAATAACTTA
3161445 TTTTAAGAAATAACTTA
1 TTTTAAGAAATAACTTA
3161462 T
1 T
3161463 CTACATATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 6 0.38
17 4 0.25
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
TTTTAAGAAATAACTTA
Found at i:3165299 original size:60 final size:61
Alignment explanation
Indices: 3165226--3165343 Score: 175
Period size: 60 Copynumber: 1.9 Consensus size: 61
3165216 GTTACACTTA
* * * *
3165226 TTCTGACAACATCATTAATATTGTTATGGCTGATGTTGAAA-ACAAAATCGTTACGATTTT
1 TTCTAACAACATCATTAATATTGTTATGACTGATATTGAAAGAAAAAATCGTTACGATTTT
*
3165286 TTCTAACAACATCATTAATATTGTTATGACTGGTATTGAAAGTAAAAAATCGTTACGA
1 TTCTAACAACATCATTAATATTGTTATGACTGATATTGAAAG-AAAAAATCGTTACGA
3165344 ATTTCAATAT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
60 37 0.73
62 14 0.27
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36
Consensus pattern (61 bp):
TTCTAACAACATCATTAATATTGTTATGACTGATATTGAAAGAAAAAATCGTTACGATTTT
Found at i:3186582 original size:72 final size:72
Alignment explanation
Indices: 3186304--3186625 Score: 385
Period size: 75 Copynumber: 4.5 Consensus size: 72
3186294 TTTGTTTTTC
*
3186304 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT-TGT
*
3186369 TGTTAAAAAA
65 T-TT-CAAAA
**
3186379 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA-TTTTGT
3186444 TTTC---A
65 TTTCAAAA
* * * * * *
3186449 ATTC-ACTTATATTGCGAGA-ATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTGTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTGTT
3186512 TTCAAAA
66 TTCAAAA
* * *
3186519 AATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTC-A-TTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTT
*
3186581 GTTTTTAAAA
63 GTTTTCAAAA
3186591 AATCAACTCATATTGCGAGAGGTGAG-TGAG-CTCAG
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
3186626 ATTCACACTG
Statistics
Matches: 221, Mismatches: 16, Indels: 24
0.85 0.06 0.09
Matches are distributed among these distances:
67 10 0.05
68 34 0.15
69 14 0.06
70 11 0.05
71 21 0.10
72 50 0.23
73 1 0.00
74 18 0.08
75 59 0.27
76 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (72 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTGTT
TTCAAAA
Found at i:3186642 original size:143 final size:144
Alignment explanation
Indices: 3186290--3186644 Score: 388
Period size: 143 Copynumber: 2.5 Consensus size: 144
3186280 TTAAGCTTTT
*** *
3186290 AATTTTTGTTTTTCAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
1 AATTTTTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTA
*
3186355 ATTTCAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACA
65 TTTTCAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACA
3186420 CGCTGAGGTAATTTC
130 CGCTGAGGTAATTTC
** * * * *
3186435 AATTTTTGTTTTCAATTC-ACTTATATTGCGAGA-ATGAGTTGAGCCTCAAGACACGTTGAGGTA
1 AATTTTTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTA
* * **
3186498 TTTTCAATTT-TGTT-TT-CAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTC
65 TTTTCAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---
* *
3186559 ACATGCTGAGGTATTTTC
127 ACACGCTGAGGTAATTTC
* *
3186577 -ATTTGTT-TTTAAAAAATCAACTCATATTGCGAGAGGTGAG-TGAG-CTCAGATTCACACTGTG
1 AATTT-TTGTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA--CACGCTGAG
3186638 GTATTTT
62 GTATTTT
3186645 TTTCAATTCA
Statistics
Matches: 178, Mismatches: 22, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
139 2 0.01
140 36 0.20
141 12 0.07
142 29 0.16
143 66 0.37
144 18 0.10
145 15 0.08
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (144 bp):
AATTTTTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAT
TTTCAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTC
Found at i:3186917 original size:72 final size:71
Alignment explanation
Indices: 3186776--3186917 Score: 178
Period size: 72 Copynumber: 2.0 Consensus size: 71
3186766 TTCAAATCAG
** * * **
3186776 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTA
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGCACACGCCGAGGTATTTTCAA-TTTAGCCTTTTA
3186841 ATTTCAA
65 ATTTCAA
*
3186848 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCCGAGGTATTTTCAA-TTAGCCTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTC-GG-CACACGCCGAGGTATTTTCAATTTAGCCTTTT
*
3186912 GATTTC
64 AATTTC
3186918 TGTTTTTCAA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
72 40 0.67
73 2 0.03
74 18 0.30
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (71 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCGGCACACGCCGAGGTATTTTCAATTTAGCCTTTTAA
TTTCAA
Found at i:3187185 original size:71 final size:71
Alignment explanation
Indices: 3187033--3187213 Score: 260
Period size: 71 Copynumber: 2.6 Consensus size: 71
3187023 TATTCTATTT
* * *
3187033 TCAAATTCAACTCATATTGCGAGAAT-AGTTGAGCCTCA-GACACGTTGAGGTATTTTCAATTTC
1 TCAAAATCAACTCATATTGCGAGAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
3187096 TGCTTT
66 TGCTTG
* *
3187102 TCAAATTTAACTCATATTGCGAGAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 TCAAAATCAACTCATATTGCGAGAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
3187167 TG-TTG
66 TGCTTG
*
3187172 TCAAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAG
1 TC-AAAATCAACTCATATTGCGAGAA-TGAGTTGAGCCTCAG
3187214 TTCACATGTT
Statistics
Matches: 101, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
69 25 0.25
70 16 0.16
71 45 0.45
72 15 0.15
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (71 bp):
TCAAAATCAACTCATATTGCGAGAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGCTTG
Found at i:3188319 original size:5 final size:5
Alignment explanation
Indices: 3188309--3188390 Score: 72
Period size: 5 Copynumber: 18.0 Consensus size: 5
3188299 AAAGAGAGGG
**
3188309 GAGAA GAGAA GA-AA GAG-A GA-AA GTCAA -AG-A GAGAA GAGAA GAGAA
1 GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA
* *
3188354 G-GAA GAGAA -A-AA GGGAA GAGAA AAGAA GAGAA GAGAA
1 GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA
3188391 CGCCGAGACT
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
3 3 0.05
4 16 0.26
5 43 0.69
ACGTcount: A:0.61, C:0.01, G:0.37, T:0.01
Consensus pattern (5 bp):
GAGAA
Found at i:3188381 original size:32 final size:35
Alignment explanation
Indices: 3188299--3188390 Score: 103
Period size: 35 Copynumber: 2.6 Consensus size: 35
3188289 AAGAGAAGGA
** *
3188299 AAAGAGAGGGGAGAAGAGAAGAAAGAGAGAAAGTC
1 AAAGAGAGAAGAGAAGAGAAGAAAGAGAAAAAGTC
* **
3188334 AAAGAGAGAAGAGAAGAGAAGGAAGAGAAAAAGGG
1 AAAGAGAGAAGAGAAGAGAAGAAAGAGAAAAAGTC
*
3188369 AAGAGAAAAGAAGAGAAGAGAA
1 AA-AG-AGAGAAGAGAAGAGAA
3188391 CGCCGAGACT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 31 0.65
36 2 0.04
37 15 0.31
ACGTcount: A:0.60, C:0.01, G:0.38, T:0.01
Consensus pattern (35 bp):
AAAGAGAGAAGAGAAGAGAAGAAAGAGAAAAAGTC
Found at i:3189240 original size:17 final size:17
Alignment explanation
Indices: 3189214--3189452 Score: 89
Period size: 17 Copynumber: 13.6 Consensus size: 17
3189204 TTAAAAAAAA
3189214 TTCGTG-TTCAAAAATC
1 TTCGTGTTTCAAAAATC
*
3189230 TTCGTGTTTCAAAATTC
1 TTCGTGTTTCAAAAATC
*
3189247 -TAGTGTTTCAAAAAT-
1 TTCGTGTTTCAAAAATC
3189262 TGTCGTGTTTTCAAAAAAAT-
1 T-TCGTG-TTTC--AAAAATC
* *
3189282 TTCCTTGTTTTCAAAAGTC
1 TT-CGTG-TTTCAAAAATC
* * * * *
3189301 -CCGTATTCCGAAAATT
1 TTCGTGTTTCAAAAATC
* **
3189317 TTCTTGTTTCAAAAAAA
1 TTCGTGTTTCAAAAATC
*
3189334 TTCTGTGTTTCATAAAT-
1 TTC-GTGTTTCAAAAATC
*
3189351 TTCCATGTTTTCAAAAAATC
1 TT-CGTG-TTTC-AAAAATC
* *
3189371 -TCGTCTTTCAAAAATT
1 TTCGTGTTTCAAAAATC
**
3189387 TTCGTGTTTTCAAAAAAAA
1 TTCGTG-TTTC-AAAAATC
* *
3189406 TTGACCGTGTTTCATAAATT
1 TT---CGTGTTTCAAAAATC
3189426 TTCGTG-TTCAAAAAATC
1 TTCGTGTTTC-AAAAATC
*
3189443 CTCGTGTTTC
1 TTCGTGTTTC
3189453 GTATTTATCA
Statistics
Matches: 164, Mismatches: 37, Indels: 42
0.67 0.15 0.17
Matches are distributed among these distances:
16 35 0.21
17 53 0.32
18 33 0.20
19 14 0.09
20 21 0.13
21 4 0.02
22 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (17 bp):
TTCGTGTTTCAAAAATC
Found at i:3189281 original size:20 final size:20
Alignment explanation
Indices: 3189256--3189297 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
3189246 CTAGTGTTTC
3189256 AAAAATTGT-CGTGTTTTCAA
1 AAAAATT-TCCGTGTTTTCAA
*
3189276 AAAAATTTCCTTGTTTTCAA
1 AAAAATTTCCGTGTTTTCAA
3189296 AA
1 AA
3189298 GTCCCGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (20 bp):
AAAAATTTCCGTGTTTTCAA
Found at i:3189360 original size:35 final size:36
Alignment explanation
Indices: 3189312--3189440 Score: 133
Period size: 35 Copynumber: 3.6 Consensus size: 36
3189302 CGTATTCCGA
*
3189312 AAATTTTCTTG-TTTCAAAAAAATTCTGTGTTTCAT
1 AAATTTTCGTGTTTTCAAAAAAATTCTGTGTTTCAT
* * * *
3189347 AAATTTCCATGTTTTC-AAAAAA-TCTCGTCTTTCAA
1 AAATTTTCGTGTTTTCAAAAAAATTCT-GTGTTTCAT
*
3189382 AAATTTTCGTGTTTTCAAAAAAAATTGACCGTGTTTCAT
1 AAATTTTCGTGTTTTC-AAAAAAATT--CTGTGTTTCAT
3189421 AAATTTTCGTG--TTCAAAAAA
1 AAATTTTCGTGTTTTCAAAAAA
3189441 TCCTCGTGTT
Statistics
Matches: 78, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
34 3 0.04
35 36 0.46
36 10 0.13
37 9 0.12
38 1 0.01
39 18 0.23
40 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (36 bp):
AAATTTTCGTGTTTTCAAAAAAATTCTGTGTTTCAT
Found at i:3189499 original size:16 final size:17
Alignment explanation
Indices: 3189480--3189571 Score: 55
Period size: 16 Copynumber: 5.3 Consensus size: 17
3189470 ATGTTTTCAA
3189480 AAAAATTTT-GTGTTT-
1 AAAAATTTTCGTGTTTC
*
3189495 TAAAATTTTCGTGTTTC
1 AAAAATTTTCGTGTTTC
**
3189512 AAAAAGAAAATTCGTGTTTCC
1 --AAA-AATTTTCGTGTTT-C
* *
3189533 TAAAAAATCTCGTGTTTC
1 -AAAAATTTTCGTGTTTC
* *
3189551 -AAAATTTTCGTTTTTT
1 AAAAATTTTCGTGTTTC
3189567 AAAAA
1 AAAAA
3189572 AAAGAGTTTC
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
15 8 0.14
16 18 0.31
17 4 0.07
18 1 0.02
19 13 0.22
20 14 0.24
21 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.43
Consensus pattern (17 bp):
AAAAATTTTCGTGTTTC
Found at i:3189527 original size:20 final size:19
Alignment explanation
Indices: 3189502--3189554 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
3189492 TTTTAAAATT
3189502 TTCGTGTTTCAAAAAGAAAA
1 TTCGTGTTTCAAAAA-AAAA
**
3189522 TTCGTGTTTC-CTAAAAAA
1 TTCGTGTTTCAAAAAAAAA
3189540 TCTCGTGTTTCAAAA
1 T-TCGTGTTTCAAAA
3189555 TTTTCGTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 5 0.19
19 11 0.41
20 11 0.41
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
TTCGTGTTTCAAAAAAAAA
Found at i:3189538 original size:55 final size:55
Alignment explanation
Indices: 3189474--3189593 Score: 145
Period size: 55 Copynumber: 2.2 Consensus size: 55
3189464 AAATTTATGT
* * * *
3189474 TTTCAAAAAAATTTTGTGTTTTAAAATTTTCGTGTTTCAAAAAGAAA-A-TTCGTG
1 TTTCTAAAAAATCTCGTGTTTCAAAATTTTCGTGTTTCAAAAA-AAAGAGTTCGTG
* *
3189528 TTTCCTAAAAAATCTCGTGTTTCAAAATTTTCGTTTTTTAAAAAAAAGAGTTTCGTG
1 TTT-CTAAAAAATCTCGTGTTTCAAAATTTTCGTGTTTCAAAAAAAAGAG-TTCGTG
3189585 TTTCTAAAA
1 TTTCTAAAA
3189594 TGCTTGTATT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
54 6 0.11
55 35 0.62
56 6 0.11
57 9 0.16
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (55 bp):
TTTCTAAAAAATCTCGTGTTTCAAAATTTTCGTGTTTCAAAAAAAAGAGTTCGTG
Found at i:3189617 original size:17 final size:18
Alignment explanation
Indices: 3189597--3189630 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
3189587 TCTAAAATGC
3189597 TTGTATTTT-AAAAAAAT
1 TTGTATTTTCAAAAAAAT
*
3189614 TTGTGTTTTCAAAAAAA
1 TTGTATTTTCAAAAAAA
3189631 AAGAGGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (18 bp):
TTGTATTTTCAAAAAAAT
Found at i:3194863 original size:16 final size:17
Alignment explanation
Indices: 3194838--3194880 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
3194828 AAGTATAATA
*
3194838 ATAAACATAAT-GATAT
1 ATAAAAATAATAGATAT
*
3194854 ATAAAAATAATACTATAT
1 ATAAAAATAATA-GATAT
3194872 ATAAAAATA
1 ATAAAAATA
3194881 TATATACACG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 10 0.43
18 13 0.57
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (17 bp):
ATAAAAATAATAGATAT
Found at i:3195017 original size:26 final size:26
Alignment explanation
Indices: 3194959--3195017 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
3194949 TAATAATAAC
* * *
3194959 ATGTATATAATACGGTGTTTAAAAAT
1 ATGTATATAATACAGTATTTAAAAAA
* *
3194985 ATATATATAATATAGTATTTAAAAAA
1 ATGTATATAATACAGTATTTAAAAAA
3195011 ATGTATA
1 ATGTATA
3195018 CATAGTATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (26 bp):
ATGTATATAATACAGTATTTAAAAAA
Found at i:3195234 original size:38 final size:35
Alignment explanation
Indices: 3195154--3195238 Score: 89
Period size: 36 Copynumber: 2.3 Consensus size: 35
3195144 AAATAAAAAT
* * *
3195154 ATATATAAATAATATAGTATTAAAGATGTATACATA
1 ATATATAAA-AATACAATATTAAAGATATATACATA
* *
3195190 ACATATAAAAATACAATATTAAATGATATATATATGTA
1 ATATATAAAAATACAATATTAAA-GATATATACA--TA
3195228 ATATATAAAAA
1 ATATATAAAAA
3195239 ATGTATACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
35 12 0.30
36 16 0.40
38 12 0.30
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (35 bp):
ATATATAAAAATACAATATTAAAGATATATACATA
Found at i:3195264 original size:25 final size:27
Alignment explanation
Indices: 3195230--3195288 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 27
3195220 TATATGTAAT
* *
3195230 ATATAAAAAATGTATACATA-ATATA-
1 ATATTAAAAATATATACATAGATATAC
*
3195255 ATATTAAAAATATTTACATAGTATATAC
1 ATATTAAAAATATATACATAG-ATATAC
3195283 ATATTA
1 ATATTA
3195289 GAGATAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 17 0.61
27 5 0.18
28 6 0.21
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.37
Consensus pattern (27 bp):
ATATTAAAAATATATACATAGATATAC
Found at i:3195578 original size:103 final size:103
Alignment explanation
Indices: 3195283--3195604 Score: 268
Period size: 103 Copynumber: 3.1 Consensus size: 103
3195273 TAGTATATAC
* *
3195283 ATATTAGAGATAATAATAATGTTAAAAAACAACTATTAATAATATTACAT-AAATATATACATAT
1 ATATTAGAGATGATAATAATGTTAAAAAACAA-TATTAATAATATTACATAAAATATATAAATAT
* * *
3195347 ACT-CATTAAAGATATATACATATAATAAAACACATGCTA
65 A-TATATTAAAGATATATACATATAACAAAACACATGATA
* * * * *
3195386 ATATTA-ATGATGATAATAAGGATAATATAAA-AATATGTACATGAA-ATTGGATAAAAAACATA
1 ATATTAGA-GATGATAATAATGTTAA-A-AAACAATAT-TA-AT-AATATT--ACATAAAATATA
* * * * *
3195448 TAACTA-ATAATACTAACGATATATACATGAT-ACGATACACAT-AT-
58 TAAATATAT-ATATTAAAGATATATACAT-ATAACAAAACACATGATA
*
3195492 ATATTAGAAATGATAATAATGTTAAAAAACAATTATTAATAATATTACATAAATATATATAAATA
1 ATATTAGAGATGATAATAATGTTAAAAAACAA-TATTAATAATATTACATAAA-ATATATAAATA
*
3195557 TATATATTAAAGATATATACATATGTAACAAAACATAT-ACTA
64 TATATATTAAAGATATATACATA--TAACAAAACACATGA-TA
3195599 ATATTA
1 ATATTA
3195605 ATAAAAAATA
Statistics
Matches: 169, Mismatches: 27, Indels: 42
0.71 0.11 0.18
Matches are distributed among these distances:
102 7 0.04
103 51 0.30
104 16 0.09
105 22 0.13
106 27 0.16
107 11 0.07
108 33 0.20
109 2 0.01
ACGTcount: A:0.53, C:0.08, G:0.07, T:0.32
Consensus pattern (103 bp):
ATATTAGAGATGATAATAATGTTAAAAAACAATATTAATAATATTACATAAAATATATAAATATA
TATATTAAAGATATATACATATAACAAAACACATGATA
Found at i:3195602 original size:22 final size:21
Alignment explanation
Indices: 3195569--3195616 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
3195559 TATATTAAAG
*
3195569 ATATATACATATGTAACAAAAC
1 ATATATACATAT-TAACAAAAA
*
3195591 ATATACTA-ATATTAATAAAAA
1 ATATA-TACATATTAACAAAAA
3195612 ATATA
1 ATATA
3195617 ATAAGGGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 12 0.52
22 9 0.39
23 2 0.09
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.31
Consensus pattern (21 bp):
ATATATACATATTAACAAAAA
Found at i:3195817 original size:23 final size:23
Alignment explanation
Indices: 3195791--3195834 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
3195781 ATTGAAACTA
*
3195791 AAAAAAATAATTCTAATAATAGT
1 AAAAAAATAATACTAATAATAGT
* *
3195814 AAAAATATACTACTAATAATA
1 AAAAAAATAATACTAATAATA
3195835 ATAACGATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (23 bp):
AAAAAAATAATACTAATAATAGT
Found at i:3195866 original size:22 final size:21
Alignment explanation
Indices: 3195828--3195903 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 21
3195818 ATATACTACT
3195828 AATAATAATAACGATAATGGTAA
1 AATAATAATAA--ATAATGGTAA
* *
3195851 ATATAATAATAAATAAT-ATTA
1 A-ATAATAATAAATAATGGTAA
*
3195872 AA-AATAATAAAAAATGGTAA
1 AATAATAATAAATAATGGTAA
3195892 AAGTAAT-ATAAA
1 AA-TAATAATAAA
3195904 AAACTAAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
19 12 0.27
20 5 0.11
21 8 0.18
22 8 0.18
23 1 0.02
24 10 0.23
ACGTcount: A:0.63, C:0.01, G:0.08, T:0.28
Consensus pattern (21 bp):
AATAATAATAAATAATGGTAA
Found at i:3196500 original size:24 final size:26
Alignment explanation
Indices: 3196473--3196526 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
3196463 TTCAAAAAGG
3196473 TATAA-TTTTTTTTGTATTT-TAATA
1 TATAATTTTTTTTTGTATTTATAATA
3196497 TATAATTTTTTTTTGTATTTATAATA
1 TATAATTTTTTTTTGTATTTATAATA
3196523 TATA
1 TATA
3196527 TAAGTTTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 5 0.18
25 14 0.50
26 9 0.32
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (26 bp):
TATAATTTTTTTTTGTATTTATAATA
Found at i:3198329 original size:19 final size:19
Alignment explanation
Indices: 3198307--3198354 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
3198297 AATTATTATT
** *
3198307 TAATTAAATTTTAATTAAA
1 TAATTAAATTCGAAGTAAA
3198326 TAATTGAAATTCGAAGTAAA
1 TAATT-AAATTCGAAGTAAA
3198346 -AATTAAATT
1 TAATTAAATT
3198355 AATGAAGTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 5 0.20
19 9 0.36
20 11 0.44
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (19 bp):
TAATTAAATTCGAAGTAAA
Found at i:3218548 original size:26 final size:27
Alignment explanation
Indices: 3218519--3218573 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
3218509 TGAATACTTA
*
3218519 ATTTTAATATACATATTT-AAATTTTT
1 ATTTTAATATAAATATTTAAAATTTTT
* *
3218545 ATTTTATTATAAATTTTTAGAAATTTTT
1 ATTTTAATATAAATATTTA-AAATTTTT
3218573 A
1 A
3218574 GAAATCTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 15 0.62
28 9 0.38
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (27 bp):
ATTTTAATATAAATATTTAAAATTTTT
Found at i:3222117 original size:17 final size:18
Alignment explanation
Indices: 3222095--3222129 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
3222085 TTAAATAATT
*
3222095 CTAAGGCTAAA-AAGCAA
1 CTAAGGCAAAACAAGCAA
3222112 CTAAGGCAAAACAAGCAA
1 CTAAGGCAAAACAAGCAA
3222130 GAAACTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.54, C:0.20, G:0.17, T:0.09
Consensus pattern (18 bp):
CTAAGGCAAAACAAGCAA
Found at i:3225244 original size:50 final size:50
Alignment explanation
Indices: 3225190--3225284 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 50
3225180 AATTAAAAGG
* * *
3225190 ATTTAATTTTGAGTGACAAAAATAAAAACATCCTAAAAGTTGGGTCAAGA
1 ATTTAATTTTGAATGACAAAAATAAAAACACCCTAAAAATTGGGTCAAGA
* * *
3225240 ATTTAATTTTGAATGACCAAAATAAAAGCGCCCTAAAAATTGGGT
1 ATTTAATTTTGAATGACAAAAATAAAAACACCCTAAAAATTGGGT
3225285 GACCAACTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (50 bp):
ATTTAATTTTGAATGACAAAAATAAAAACACCCTAAAAATTGGGTCAAGA
Found at i:3225747 original size:20 final size:22
Alignment explanation
Indices: 3225724--3225767 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
3225714 AAAATATTAA
*
3225724 AAAAT-ATTTT-TATATTTTTT
1 AAAATAATTTTCTAAATTTTTT
3225744 AAAATAATTTTCTAAATTTTTT
1 AAAATAATTTTCTAAATTTTTT
3225766 AA
1 AA
3225768 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.24
21 5 0.24
22 11 0.52
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
AAAATAATTTTCTAAATTTTTT
Found at i:3229998 original size:10 final size:10
Alignment explanation
Indices: 3229983--3230007 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
3229973 AGTTGATGAA
3229983 TAATACAAAT
1 TAATACAAAT
3229993 TAATACAAAT
1 TAATACAAAT
3230003 TAATA
1 TAATA
3230008 TTTTCGATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (10 bp):
TAATACAAAT
Found at i:3232845 original size:35 final size:35
Alignment explanation
Indices: 3232799--3232870 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
3232789 GGTTCTTCCC
3232799 TTTTTATTTTGCTTTACAAATAATTTCAAAGAGGG
1 TTTTTATTTTGCTTTACAAATAATTTCAAAGAGGG
3232834 TTTTTATTTTGCTTTACAAATAATTTCAAAGAGGG
1 TTTTTATTTTGCTTTACAAATAATTTCAAAGAGGG
3232869 TT
1 TT
3232871 AATTGATGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (35 bp):
TTTTTATTTTGCTTTACAAATAATTTCAAAGAGGG
Found at i:3236774 original size:19 final size:19
Alignment explanation
Indices: 3236727--3236778 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
3236717 AGTAACAGTC
*
3236727 AATTTTTCAGTAA-AAATA
1 AATTATTCAGTAACAAATA
* * *
3236745 AAATATACAGTAACAATTA
1 AATTATTCAGTAACAAATA
3236764 AATTATTCAGTAACA
1 AATTATTCAGTAACA
3236779 GTCGATCTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 10 0.37
19 17 0.63
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.33
Consensus pattern (19 bp):
AATTATTCAGTAACAAATA
Found at i:3236959 original size:47 final size:46
Alignment explanation
Indices: 3236900--3237059 Score: 232
Period size: 47 Copynumber: 3.4 Consensus size: 46
3236890 CCGGAACAGT
* *
3236900 AACAGTAGCAGTACGGTACACAGAGTGCCTCATCAGAACAAATCC-A
1 AACAGTAACAGTACGGTACACAGAGTACCTCATC-GAACAAATCCGA
*
3236946 GAACAGTAACAGTATGGTACACAGAGTACCTCATCGGAACAAATCCGA
1 -AACAGTAACAGTACGGTACACAGAGTACCTCATC-GAACAAATCCGA
*
3236994 AACAGCAACAGTACGGTACACAGAGTACCTCATCGAAACAAATCCGA
1 AACAGTAACAGTACGGTACACAGAGTACCTCATCG-AACAAATCCGA
3237041 AACAGTAACAGTAACGGTA
1 AACAGTAACAGT-ACGGTA
3237060 ATAGTAACAA
Statistics
Matches: 103, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
46 1 0.01
47 95 0.92
48 7 0.07
ACGTcount: A:0.41, C:0.24, G:0.19, T:0.15
Consensus pattern (46 bp):
AACAGTAACAGTACGGTACACAGAGTACCTCATCGAACAAATCCGA
Found at i:3239733 original size:23 final size:23
Alignment explanation
Indices: 3239700--3239821 Score: 104
Period size: 23 Copynumber: 5.2 Consensus size: 23
3239690 ACAACTTTTC
3239700 GTGAGCTTCCCGATAGGCTCTTT
1 GTGAGCTTCCCGATAGGCTCTTT
* **
3239723 GTGAGCCTCCCGATAGTGCTCGCT
1 GTGAGCTTCCCGATAG-GCTCTTT
* * **
3239747 -TGAACTTCCCGATATATGGCTATCC
1 GTGAGCTTCCCG--ATA-GGCTCTTT
3239772 G-GAGCTTCCCGATAGGCTCTTT
1 GTGAGCTTCCCGATAGGCTCTTT
* *
3239794 GTGAGCTTCACGATATGGTTCTTT
1 GTGAGCTTCCCGATA-GGCTCTTT
3239818 GTGA
1 GTGA
3239822 ACTACCTGAT
Statistics
Matches: 78, Mismatches: 14, Indels: 13
0.74 0.13 0.12
Matches are distributed among these distances:
22 6 0.08
23 39 0.50
24 16 0.21
25 16 0.21
26 1 0.01
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.33
Consensus pattern (23 bp):
GTGAGCTTCCCGATAGGCTCTTT
Found at i:3240276 original size:46 final size:46
Alignment explanation
Indices: 3240209--3240334 Score: 182
Period size: 46 Copynumber: 2.7 Consensus size: 46
3240199 ATGAAATGTG
* * *
3240209 TAAGACCATGGTTGAAAGATACTATGGCAACGTGACATG-CAATGAA
1 TAAGACCATGGTTGAAAGATACTATGGCAACATGACA-GAAAACGAA
*
3240255 TAAGACCATGGTTGAAAGATACTATGGCAACATGACAGAAAACGAG
1 TAAGACCATGGTTGAAAGATACTATGGCAACATGACAGAAAACGAA
* *
3240301 TAAGACCATAGTTGAAAGATACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACTATGGCAACATG
3240335 TCAAAGATAA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 72 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACTATGGCAACATGACAGAAAACGAA
Found at i:3245936 original size:39 final size:39
Alignment explanation
Indices: 3245880--3245989 Score: 175
Period size: 39 Copynumber: 2.8 Consensus size: 39
3245870 ACAAAGCATG
*
3245880 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
3245921 CGGGACTTAGCCCGGATATAACGCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
3245960 CGGGACTTAGCCCGGATATAGCACCAGCAC
1 CGGGACTTAGCCCGGATATAACACCAGCAC
3245990 TTAGCCTGCG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
39 57 0.88
40 2 0.03
41 6 0.09
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:3246026 original size:39 final size:39
Alignment explanation
Indices: 3245992--3246102 Score: 168
Period size: 39 Copynumber: 2.8 Consensus size: 39
3245982 ACCAGCACTT
*
3245992 AGCCTGCGGACTTTAAGTCCGGATATATTTCCAGCATAA
1 AGCCTGCGGACTTCAAGTCCGGATATATTTCCAGCATAA
* * *
3246031 AGCCTGCGAACTTCAAGTCCTGATTTATTTCCAGCATAA
1 AGCCTGCGGACTTCAAGTCCGGATATATTTCCAGCATAA
* *
3246070 AGCCTACGGACTTCAAGTCCGGATATTTTTCCA
1 AGCCTGCGGACTTCAAGTCCGGATATATTTCCA
3246103 ATACCATGAA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (39 bp):
AGCCTGCGGACTTCAAGTCCGGATATATTTCCAGCATAA
Found at i:3248464 original size:8 final size:8
Alignment explanation
Indices: 3248447--3248476 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
3248437 TCACAGAAAT
3248447 CATACATG
1 CATACATG
*
3248455 CATGCATG
1 CATACATG
3248463 CATACATG
1 CATACATG
3248471 CATACA
1 CATACA
3248477 CATAAATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.23
Consensus pattern (8 bp):
CATACATG
Found at i:3275646 original size:34 final size:34
Alignment explanation
Indices: 3275608--3275676 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
3275598 TTTGACTGAG
*
3275608 TTGCTGCTAGAGTATGATTTTGAAACATAAGTTT
1 TTGCTGCTAGAATATGATTTTGAAACATAAGTTT
3275642 TTGCTGCTAGAATATGATTTTGAAACATAAGTTT
1 TTGCTGCTAGAATATGATTTTGAAACATAAGTTT
3275676 T
1 T
3275677 GTTTGGTTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (34 bp):
TTGCTGCTAGAATATGATTTTGAAACATAAGTTT
Found at i:3284207 original size:46 final size:47
Alignment explanation
Indices: 3284155--3284418 Score: 333
Period size: 46 Copynumber: 5.7 Consensus size: 47
3284145 TGTCATAGTG
* *
3284155 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATGTCAGGTTGCCATGGTA
* *
3284201 TCTTTCAACCATGGTCTTATTCA-TTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATGTCAGGTTGCCATGGTA
* * ** *
3284247 TCTTTCAACCATGGTCTTATTTA-TTTCCCGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATGTCAGGTTGCCATGGTA
* * * *
3284293 TCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATGTCAGGTTGCCATGGTA
* *
3284339 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATGTCAGGTTGCCATGGTA
* *
3284385 TCTTTCAACCATGGTCTTACGCA-TTTCATATCAG
1 TCTTTCAACCATGGTCTTACTCATTTTCATGTCAG
3284419 AGAGCACACT
Statistics
Matches: 198, Mismatches: 17, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
45 4 0.02
46 194 0.98
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.40
Consensus pattern (47 bp):
TCTTTCAACCATGGTCTTACTCATTTTCATGTCAGGTTGCCATGGTA
Found at i:3284283 original size:92 final size:92
Alignment explanation
Indices: 3284155--3284417 Score: 382
Period size: 92 Copynumber: 2.9 Consensus size: 92
3284145 TGTCATAGTG
* *
3284155 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * *
3284220 TTCATTTCATGTCACGTTGCCATGGTA
66 CACATTTCATATCACGCTGCCATGGTA
* * *
3284247 TCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
* *
3284312 CACGTTTCATATCAGGCTGCCATGGTA
66 CACATTTCATATCACGCTGCCATGGTA
* * * *
3284339 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
*
3284404 CGCATTTCATATCA
66 CACATTTCATATCA
3284418 GAGAGCACAC
Statistics
Matches: 151, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 151 1.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (92 bp):
TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCACGCTGCCATGGTA
Found at i:3284403 original size:138 final size:138
Alignment explanation
Indices: 3284155--3284403 Score: 392
Period size: 138 Copynumber: 1.8 Consensus size: 138
3284145 TGTCATAGTG
* * * * * *
3284155 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACAGTTTCTATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTA
** *
3284220 TTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTG
66 CACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTG
3284285 CCATGGTA
131 CCATGGTA
3284293 TCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTTACACAGTTTC-TATCAGGCTGCCATGGTATCTTTCAACCATGGTCTT
*
3284357 ACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
65 ACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTA
3284404 CGCATTTCAT
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
137 4 0.04
138 96 0.96
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (138 bp):
TCTTTCAACCATGGTCTTACACAGTTTCTATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTG
CCATGGTA
Found at i:3286424 original size:18 final size:20
Alignment explanation
Indices: 3286409--3286445 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3286399 TAATAATAAA
*
3286409 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
3286429 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
3286446 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:3298201 original size:87 final size:89
Alignment explanation
Indices: 3298029--3298203 Score: 257
Period size: 87 Copynumber: 2.0 Consensus size: 89
3298019 TATCTTTCAA
* * *
3298029 AAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
3298094 TCGTTTTTTCAATTTATGCTTTTC
66 TCGTTTTTTCAATTTATGCTTTTC
** *
3298118 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTC-GG-GGCACGCCGAGGTATTTTTAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
*
3298181 TC-TGTTTTTCAATTTCTGCTTTT
66 TCGT-TTTTTCAATTTATGCTTTT
3298204 AATTTCTGTT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
86 1 0.01
87 39 0.50
88 2 0.03
89 36 0.46
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
TCGTTTTTTCAATTTATGCTTTTC
Found at i:3298216 original size:13 final size:13
Alignment explanation
Indices: 3298172--3298216 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
3298162 CGCCGAGGTA
3298172 TTTTTAATTTCTG
1 TTTTTAATTTCTG
3298185 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
3298199 CTTTTAATTTCTG
1 TTTTTAATTTCTG
3298212 TTTTT
1 TTTTT
3298217 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:3298281 original size:100 final size:101
Alignment explanation
Indices: 3298085--3298479 Score: 439
Period size: 100 Copynumber: 4.1 Consensus size: 101
3298075 CGCTGAGGTA
** *
3298085 TTTTCAATTTC-GTTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCT
1 TTTTCAATTTCTGCCTTTT-AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * *
3298149 GAGCCTCGGGGCACGCCGAGGTATTTTTAATTTCTGT
65 GAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT
* *
3298186 TTTTCAATTTCTG-CTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGCCTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
3298250 AGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGT
66 AGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT
* ** * *
3298286 TTTTCAATTTTTGCCTTACAAATTCTGCTTTTC--AAATCAACTCATATTG-GAGAGGTGAGTTG
1 TTTTCAATTTCTGCCTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
3298348 AGCCTCAGGACACGCTGAGGTATTTTCAA-------
66 AGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT
* * ** *
3298377 TTTTC--GTT-T---TTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
1 TTTTCAATTTCTGCCTTTTAATTTATGCTT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
3298436 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGT
65 GAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT
*
3298473 TTGTCAA
1 TTTTCAA
3298480 AACTCAACTC
Statistics
Matches: 255, Mismatches: 24, Indels: 33
0.82 0.08 0.11
Matches are distributed among these distances:
85 10 0.04
86 1 0.00
88 17 0.07
89 42 0.16
91 5 0.02
96 4 0.02
98 41 0.16
99 16 0.06
100 88 0.35
101 30 0.12
102 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (101 bp):
TTTTCAATTTCTGCCTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT
Found at i:3298506 original size:73 final size:72
Alignment explanation
Indices: 3298405--3298980 Score: 681
Period size: 73 Copynumber: 7.9 Consensus size: 72
3298395 ATGTTTCTAA
* * *
3298405 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTATTTTCAATTTC
3298470 TGTTTGTC
65 TGTTTGTC
* * *
3298478 AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTC--A-A----G-GTTATTTTCAATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTCAATTTCT
*
3298535 GTTTTTC
66 GTTTGTC
* *
3298542 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTATTTTCAATT
*
3298607 TTTGTTTGTC
63 TCTGTTTGTC
*
3298617 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTATTTTCAATTTC
*
3298682 TGTCTT-TAAA
65 TGT-TTGT--C
* * *
3298692 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTATTTTCAATTTC
*
3298757 TGTTTTTC
65 TGTTTGTC
* * * *
3298765 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-AGACGCTGAGGTAATTTCAATTT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTCAATTT
*
3298829 TTGTTTGTC
64 CTGTTTGTC
*
3298838 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTATTTTCAATTTC
3298903 TGTCTT-TC
65 TGT-TTGTC
* * * * *
3298911 AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGAGGTGTTTTCCATT
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTCAATT
3298975 TCTGTT
63 TCTGTT
3298981 CTTCAATTTT
Statistics
Matches: 438, Mismatches: 41, Indels: 48
0.83 0.08 0.09
Matches are distributed among these distances:
64 19 0.04
65 1 0.00
66 35 0.08
69 2 0.00
70 2 0.00
71 36 0.08
72 1 0.00
73 151 0.34
74 32 0.07
75 123 0.28
76 36 0.08
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTCAATTTCT
GTTTGTC
Found at i:3298607 original size:75 final size:75
Alignment explanation
Indices: 3298521--3298986 Score: 660
Period size: 75 Copynumber: 6.3 Consensus size: 75
3298511 GCCTCAAGGT
* * *
3298521 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGA
1 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
3298586 CACGCTGAGG
66 CACGCTGAGG
* * * *
3298596 TAATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
1 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
*
3298659 CACGTTGAGG
66 CACGCTGAGG
* * *
3298669 TATTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
1 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
*
3298734 CACGTTGAGG
66 CACGCTGAGG
*
3298744 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG-
1 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
3298808 -ACGCTGAGG
66 CACGCTGAGG
* * * *
3298817 TAATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
1 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
*
3298880 CACGTTGAGG
66 CACGCTGAGG
* *
3298890 TATTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG
1 TATTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG
3298955 --ACGCTGAGG
65 ACACGCTGAGG
* * *
3298964 TGTTTTCCATTTCTGTTCTTCAA
1 TATTTTCAATTTCTGTTTTTCAA
3298987 TTTTGTGTTT
Statistics
Matches: 349, Mismatches: 35, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
71 39 0.11
73 118 0.34
74 25 0.07
75 128 0.37
76 39 0.11
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (75 bp):
TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
CACGCTGAGG
Found at i:3298653 original size:139 final size:143
Alignment explanation
Indices: 3298385--3298960 Score: 702
Period size: 139 Copynumber: 4.0 Consensus size: 143
3298375 AATTTTCGTT
* * * * *
3298385 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * * *
3298449 CGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGC
66 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
3298513 CTCAAG-G-T-TA
131 CTCAAGAGCTGTA
* *
3298523 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* *
3298588 CGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
*
3298652 CTCAAGACACGTTGAGGTA
131 CTCAAG--A-GCT---GTA
* * * *
3298671 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * * *
3298736 CGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAA
66 CGCTGAGGTAATTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
3298801 CCTCAAGACGCTGAGGTA
130 CCTCAAGA-GCT---GTA
* * *
3298819 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * *
3298882 CGTTGAGGTATTTTCAATTTCTGTCTT-TCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTG
66 CGCTGAGGTAATTTCAATTTCTGT-TTGTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
3298946 AACCTCAAGACGCTG
128 AACCTCAAGA-GCTG
3298961 AGGTGTTTTC
Statistics
Matches: 395, Mismatches: 29, Indels: 22
0.89 0.07 0.05
Matches are distributed among these distances:
138 15 0.04
139 112 0.28
143 1 0.00
144 2 0.01
146 68 0.17
147 48 0.12
148 110 0.28
150 39 0.10
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (143 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
CTCAAGAGCTGTA
Found at i:3299074 original size:13 final size:14
Alignment explanation
Indices: 3299056--3299087 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
3299046 CGCTGAGGTA
3299056 TTTTCAAA-TTTGT
1 TTTTCAAATTTTGT
3299069 TTTTCAAATTTTGT
1 TTTTCAAATTTTGT
3299083 TTTTC
1 TTTTC
3299088 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.19, C:0.09, G:0.06, T:0.66
Consensus pattern (14 bp):
TTTTCAAATTTTGT
Found at i:3299103 original size:90 final size:89
Alignment explanation
Indices: 3298955--3299430 Score: 430
Period size: 90 Copynumber: 5.3 Consensus size: 89
3298945 GAACCTCAAG
* * * * * *
3298955 ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTTGTGTTTCAAAAAAATCAGCTCATATTGCG
1 ACGCTGAGGTATTTTCAAATT-TGTTTTTCAATTTTGTTTTTCAAAAAAATCAACTCATATTGCG
*
3299020 AGTGGTGAGTTGAGCCTTGACTCAC
65 AGAGGTGAGTTGAGCCTTGACTCAC
*
3299045 ACGCTGAGGTATTTTCAAATTTGTTTTTCAAATTTTGTTTTTCCAAAAAATCAACTCATATTGCG
1 ACGCTGAGGTATTTTCAAATTTGTTTTTC-AATTTTGTTTTTCAAAAAAATCAACTCATATTGCG
* * * **
3299110 AGATGTGAGTTCAGCC-TCA-GGAC
65 AGAGGTGAGTTGAGCCTTGACTCAC
* * * *
3299133 ACGCTGAGATATTTTCAATTTCTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTCAA-AT-TTGTTTTTCAATTT-TGTTTTTCAAAAAAATCAACTCATATTG
* *
3299198 CGAGAGGTGAGTTGAGCC-TCAGTCAC
63 CGAGAGGTGAGTTGAGCCTTGACTCAC
* * * * *
3299224 ATGCCGAGGTATTTTCAATTGATTTTTTTTTCAATTTATGCTTTGC--AAAAATCAACTCATATT
1 ACGCTGAGGTATTTTCAA---ATTTGTTTTTCAATTT-TGTTTTTCAAAAAAATCAACTCATATT
* * **
3299287 ACGAGAGGTGAGTTGAGCCTCGGGTCAC
62 GCGAGAGGTGAGTTGAGCCTTGACTCAC
** * * *
3299315 ATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTG-TTTT---AAAAATCAACTCATATTGC
1 ACGCTGAGGTATTTTC-AAATTTGTTTTTC-AATTTTGTTTTTCAAAAAAATCAACTCATATTGC
* *
3299376 GAGAAGTGAGTTGAGCCTTGGCTCAC
64 GAGAGGTGAGTTGAGCCTTGACTCAC
** * *
3299402 GTGCTGAGCTATTTTCAATTTCTGTTTTT
1 ACGCTGAGGTATTTTCAAATT-TGTTTTT
3299431 AATGTCTAGT
Statistics
Matches: 325, Mismatches: 50, Indels: 25
0.81 0.12 0.06
Matches are distributed among these distances:
86 3 0.01
87 59 0.18
88 22 0.07
89 25 0.08
90 156 0.48
91 37 0.11
92 22 0.07
93 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.38
Consensus pattern (89 bp):
ACGCTGAGGTATTTTCAAATTTGTTTTTCAATTTTGTTTTTCAAAAAAATCAACTCATATTGCGA
GAGGTGAGTTGAGCCTTGACTCAC
Found at i:3299210 original size:180 final size:176
Alignment explanation
Indices: 3298892--3299430 Score: 581
Period size: 180 Copynumber: 3.0 Consensus size: 176
3298882 CGTTGAGGTA
* * * * *
3298892 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AG
1 TTTTCAATTTATG-CTTTC-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* * * *
3298955 ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTTGTGTTTCAAAAAAATCAGCTCATATTGCG
64 ACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTTGT-TTTCAAAAAAATCAACTCATATTGCG
* *
3299020 AGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTTGT
128 AGAGGTGAGTTGAGCCTTGACTCACATGCTGAGGTATTTTCAAATTTGT
* * *
3299069 TTTTCAAATTT-TGTTTTTCCAAAAAATCAACTCATATTGCGAGATGTGAGTTCAGCCTCAGGAC
1 TTTTC-AATTTATG-CTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
3299133 ACGCTGAGATATTTTCAATTTCTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTG
64 ACGCTGAGGTATTTTCAATTTC-TGTTTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATATTG
* * * *
3299198 CGAGAGGTGAGTTGAGCC-TCAGTCACATGCCGAGGTATTTTCAATTGATTTTT
126 CGAGAGGTGAGTTGAGCCTTGACTCACATGCTGAGGTATTTTCAA---ATTTGT
* * *
3299251 TTTTCAATTTATGCTTTGC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTCAATTTATGCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--AC
** * ** *
3299315 ATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTGTTTT---AAAAATCAACTCATATTGCG
64 ACGCTGAGGTATTTTCAATTTCTGTTTTTC-AATTTTGTTTTCAAAAAAATCAACTCATATTGCG
* * * * *
3299377 AGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGT
128 AGAGGTGAGTTGAGCCTTGACTCACATGCTGAGGTATTTTCAAATT-TGT
3299427 TTTT
1 TTTT
3299431 AATGTCTAGT
Statistics
Matches: 305, Mismatches: 42, Indels: 31
0.81 0.11 0.08
Matches are distributed among these distances:
175 2 0.01
176 42 0.14
177 47 0.15
178 45 0.15
179 35 0.11
180 79 0.26
181 20 0.07
182 35 0.11
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (176 bp):
TTTTCAATTTATGCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTATTTTCAATTTCTGTTTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGCCTTGACTCACATGCTGAGGTATTTTCAAATTTGT
Found at i:3300143 original size:30 final size:30
Alignment explanation
Indices: 3300107--3300200 Score: 135
Period size: 30 Copynumber: 3.3 Consensus size: 30
3300097 CTAGCCTTTG
3300107 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
3300137 CCACCACC-ACT-C-C-A-CCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
3300162 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
3300192 CCACCACCA
1 CCACCACCA
3300201 CTTGTACCTA
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
25 19 0.33
26 4 0.07
27 2 0.04
28 1 0.02
29 4 0.07
30 27 0.47
ACGTcount: A:0.26, C:0.52, G:0.05, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:3300710 original size:23 final size:23
Alignment explanation
Indices: 3300676--3300808 Score: 69
Period size: 22 Copynumber: 5.7 Consensus size: 23
3300666 CTTTTTTTGT
3300676 TATTAT-TATATTTTTAATATTA
1 TATTATATATATTTTTAATATTA
*
3300698 TATTATATATATTCTTT--TAATA
1 TATTATATATATT-TTTAATATTA
** * *
3300720 TATTAGGTATATTCTAAAT-TCTA
1 TATTATATATATTTTTAATAT-TA
* * *
3300743 TATTACGTATATATATTATACTATTT
1 TATTA--TATATAT-TTTTAATATTA
* * *
3300769 TA-TGTATATATCTTTAATACTA
1 TATTATATATATTTTTAATATTA
3300791 TATTATTTATATATTTTT
1 TATTA--TATATATTTTT
3300809 TTCTACATGT
Statistics
Matches: 78, Mismatches: 21, Indels: 21
0.65 0.17 0.17
Matches are distributed among these distances:
21 1 0.01
22 29 0.37
23 22 0.28
24 3 0.04
25 16 0.21
26 6 0.08
27 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATATATATTTTTAATATTA
Found at i:3300778 original size:25 final size:25
Alignment explanation
Indices: 3300682--3300881 Score: 87
Period size: 25 Copynumber: 8.2 Consensus size: 25
3300672 TTGTTATTAT
* * *
3300682 TATATTTTTAATATTATATTATATA
1 TATATATTTAATACTATATTATGTA
* * *
3300707 TAT-TCTTT--TAATATATTAGGTA
1 TATATATTTAATACTATATTATGTA
* * * *
3300729 TAT-T-CTAAATTCTATATTACGTA
1 TATATATTTAATACTATATTATGTA
*
3300752 TATATA-TT-ATACTATTTTATGTA
1 TATATATTTAATACTATATTATGTA
* *
3300775 TATATCTTTAATACTATATTATTTA
1 TATATATTTAATACTATATTATGTA
* ** *
3300800 TATATTTTTTTCTACATGTTATCTTATGTA
1 TATA---TATT-TA-ATACTATATTATGTA
3300830 TATAT-TTTAAT--TATATTATGTA
1 TATATATTTAATACTATATTATGTA
* * * *
3300852 TGTATTTTTTACACTATATTATGTA
1 TATATATTTAATACTATATTATGTA
*
3300877 CATAT
1 TATAT
3300882 TTTTTTATAT
Statistics
Matches: 134, Mismatches: 27, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
21 1 0.01
22 29 0.22
23 35 0.26
24 10 0.07
25 36 0.27
26 2 0.01
27 1 0.01
28 3 0.02
29 2 0.01
30 15 0.11
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATTTAATACTATATTATGTA
Found at i:3300868 original size:77 final size:80
Alignment explanation
Indices: 3300749--3300919 Score: 197
Period size: 77 Copynumber: 2.2 Consensus size: 80
3300739 TCTATATTAC
* * * * * *
3300749 GTATATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATATTTTTTTCTA
1 GTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTATA
*
3300814 -C-ATGTTAT-CTTAT
66 TCTAT-TTATACATAT
* * * *
3300827 GTATATATTTTA-ATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTTTATA
1 GTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTATA
3300891 TCTATTTATACATAT
66 TCTATTTATACATAT
*
3300906 GTATATATTATATA
1 GTATATATTTTATA
3300920 TATCTTAACA
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
77 43 0.56
78 16 0.21
79 17 0.22
80 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.57
Consensus pattern (80 bp):
GTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTATA
TCTATTTATACATAT
Found at i:3300974 original size:25 final size:24
Alignment explanation
Indices: 3300946--3301001 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
3300936 GTTATATTTT
*
3300946 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
3300971 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
3300994 CACTATTA
1 CACTATTA
3301002 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:3308366 original size:15 final size:17
Alignment explanation
Indices: 3308329--3308372 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
3308319 CTAATATCCT
3308329 AATCCAAAAATTATCAG
1 AATCCAAAAATTATCAG
*
3308346 AATCCAAAAGTTA-CA-
1 AATCCAAAAATTATCAG
3308361 AATCCAACAAAT
1 AATCCAA-AAAT
3308373 GATGTTCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 7 0.29
16 5 0.21
17 12 0.50
ACGTcount: A:0.55, C:0.20, G:0.05, T:0.20
Consensus pattern (17 bp):
AATCCAAAAATTATCAG
Found at i:3317059 original size:21 final size:22
Alignment explanation
Indices: 3317035--3317076 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
3317025 GGTATCAGAG
*
3317035 CTTTTTCTGG-GATTTTTTTTT
1 CTTTGTCTGGCGATTTTTTTTT
3317056 CTTTGTCTGGCGATTTTTTTT
1 CTTTGTCTGGCGATTTTTTTT
3317077 CCTGATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.05, C:0.12, G:0.17, T:0.67
Consensus pattern (22 bp):
CTTTGTCTGGCGATTTTTTTTT
Found at i:3319708 original size:33 final size:33
Alignment explanation
Indices: 3319611--3319709 Score: 153
Period size: 33 Copynumber: 3.0 Consensus size: 33
3319601 TTTCTTCTTG
* *
3319611 ACATTCCAGCTCCTATCCAGCAACAAAACACCC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
*
3319644 ACATTCCAGCTCCTGTCCAGCAGCAAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
* *
3319677 ACATTCCAACTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
3319710 CCACTCAGTC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.33, C:0.41, G:0.08, T:0.17
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
Found at i:3325552 original size:11 final size:11
Alignment explanation
Indices: 3325538--3325563 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
3325528 AACTTCAAAT
3325538 AAGAAAAAAAA
1 AAGAAAAAAAA
3325549 AAGAAAAAAAA
1 AAGAAAAAAAA
3325560 AAGA
1 AAGA
3325564 GGAAAGAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:3326883 original size:15 final size:16
Alignment explanation
Indices: 3326857--3326887 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
3326847 ATTCTGTTAA
3326857 ATTTTCTTTATTTTAT
1 ATTTTCTTTATTTTAT
3326873 ATTTT-TTTATTTTAT
1 ATTTTCTTTATTTTAT
3326888 TATTAATGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTCTTTATTTTAT
Found at i:3327958 original size:17 final size:17
Alignment explanation
Indices: 3327936--3327969 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
3327926 AAATTAAAAC
*
3327936 ATATATTTATTATATAT
1 ATATATATATTATATAT
*
3327953 ATATATATATTTTATAT
1 ATATATATATTATATAT
3327970 CTCAACATTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATATATATATTATATAT
Found at i:3328704 original size:22 final size:23
Alignment explanation
Indices: 3328668--3328728 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
3328658 CTAAAAATGA
* *
3328668 TAAAATTTTGATTTAATC-ATT-
1 TAAAATTATAATTTAATCTATTG
*
3328689 TAAAAATTATATTTTAA-CTATTG
1 T-AAAATTATAATTTAATCTATTG
3328712 TAAAATTATAATTTAAT
1 TAAAATTATAATTTAAT
3328729 TTCGATCCCC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 2 0.06
22 29 0.91
23 1 0.03
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (23 bp):
TAAAATTATAATTTAATCTATTG
Found at i:3330893 original size:11 final size:10
Alignment explanation
Indices: 3330872--3330897 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
3330862 TATTGTGCTC
3330872 TTTTTTCTTT
1 TTTTTTCTTT
3330882 TTTTTTCTTT
1 TTTTTTCTTT
3330892 TTTTTT
1 TTTTTT
3330898 ACAGTGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:3337551 original size:17 final size:18
Alignment explanation
Indices: 3337517--3337553 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
3337507 AATGTATTAT
*
3337517 AAATTACATAATATATAA
1 AAATAACATAATATATAA
3337535 AAATAACATAA-ATATAA
1 AAATAACATAATATATAA
3337552 AA
1 AA
3337554 TATTATACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (18 bp):
AAATAACATAATATATAA
Found at i:3339755 original size:134 final size:133
Alignment explanation
Indices: 3339479--3339840 Score: 381
Period size: 134 Copynumber: 2.7 Consensus size: 133
3339469 AAAAGAATAT
* * ** * * * * *
3339479 TCGATCATTCTGAACAAACGAGAAATCACAACCCAGCACGATAGGGTA-TGATT-CTCGAATTGT
1 TCGATCATTTTGAACAAACGCGAAATTGCAACCCAACACGTTAAGGCACT-ATTCCGCGAATTG-
* * * * * * * * * *
3339542 C-AAACACCGAATATCGCTTTCGTTTTAAATAATTTTTTAAAATATATGAATGAATTTTTGAAGG
64 CAAAATATCGAATTTCGCCTTCGTTTTAAAGAATTTTTTAAAAGACATGAAGGAAATCTTGAAGG
*
3339606 GATAC
129 GACAC
3339611 TCGATCATTTT-AAGCAAACGCGAAATTGCAACCCAACACGTTAAGGCACTATTCCGCGAATTGC
1 TCGATCATTTTGAA-CAAACGCGAAATTGCAACCCAACACGTTAAGGCACTATTCCGCGAATTGC
* *
3339675 AAAATATCGAATTTCGCCTTCGTTTTAAAGAATTCTTTTAAAAGGCATGAGGGAAATCTTGAAGG
65 AAAATATCGAATTTCGCCTTCGTTTTAAAGAATT-TTTTAAAAGACATGAAGGAAATCTTGAAGG
*
3339740 GACAT
129 GACAC
* * * * * *
3339745 TCGATTATTTTGCACAAACGCGAAATTGCCACCCAACACGTTAGGGCACTATTCCGCGGATTGCC
1 TCGATCATTTTGAACAAACGCGAAATTGCAACCCAACACGTTAAGGCACTATTCCGCGAATTGCA
* *
3339810 AAATATCGGATTTCACCTTCGTTTTAAAGAA
66 AAATATCGAATTTCGCCTTCGTTTTAAAGAA
3339841 AATTGTTTTA
Statistics
Matches: 193, Mismatches: 31, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
131 2 0.01
132 41 0.21
133 37 0.19
134 112 0.58
135 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (133 bp):
TCGATCATTTTGAACAAACGCGAAATTGCAACCCAACACGTTAAGGCACTATTCCGCGAATTGCA
AAATATCGAATTTCGCCTTCGTTTTAAAGAATTTTTTAAAAGACATGAAGGAAATCTTGAAGGGA
CAC
Found at i:3342385 original size:15 final size:15
Alignment explanation
Indices: 3342361--3342390 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
3342351 TATTTATTTA
*
3342361 TTTATTTGTATATAT
1 TTTATATGTATATAT
3342376 TTTATATGTATATAT
1 TTTATATGTATATAT
3342391 GTGATTGGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (15 bp):
TTTATATGTATATAT
Found at i:3345811 original size:20 final size:20
Alignment explanation
Indices: 3345763--3345811 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
3345753 AAAAAACAGA
*
3345763 AGAGGAGGGAGAGAAAAGAGG
1 AGAGG-GGGAAAGAAAAGAGG
* * *
3345784 AAACGGGGAAAGAAGAGAGG
1 AGAGGGGGAAAGAAAAGAGG
3345804 AGAGGGGG
1 AGAGGGGG
3345812 GAGCTCCGGC
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.45, C:0.02, G:0.53, T:0.00
Consensus pattern (20 bp):
AGAGGGGGAAAGAAAAGAGG
Found at i:3347523 original size:215 final size:215
Alignment explanation
Indices: 3347189--3348092 Score: 863
Period size: 215 Copynumber: 4.3 Consensus size: 215
3347179 CATGTGACAA
* * **** *
3347189 AGGCTCAACTCACTTTTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTG-AAATCACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC-ACAAAAATTGAAAAT-ACCTC
* * *
3347253 AGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTCG-AAAAGTAGAAATTAAA
64 AGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTGAAAAAGTAGAAATTAAA
*
3347317 AGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTGAACACAGAATTTGCCAAACAGATTTTG
129 AGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTGAACACAGAATTTGCCAAACAGAATTTG
3347382 -AAATACCTCGGCATGTGACCCG
194 AAAATACCTCGGC-TGTGACCCG
** *
3347404 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATTAAAACACACAAAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ACACAAAAATTGAAAATACCTCA
* * * *
3347468 GCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATAAGCTGATCTTGAAAAAGTAGAAATTAAAA
65 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTGAAAAAGTAGAAATTAAAA
3347533 GGTTCAACCCACCTCTCGCAATATGAGTTGACTTTTTG-A-A-AG----T-------AGAATTTG
130 GGTTCAACCCACCTCTCGCAATATGAGTTGA-TTTTTGAACACAGAATTTGCCAAACAGAATTTG
3347584 AAAATACCTCGG-TGTG-CCCG
194 AAAATACCTCGGCTGTGACCCG
* *
3347604 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-ACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACACAAAAATTGAAAATACCTCAG
* * *
3347668 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAA--A-AAATTGAAA-
66 CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTGAAAAAGTAGAAATTAAAAG
* * *** * **** * * **
3347729 -TT--ACCTCAGCGTGTC-CTGAGGCTCAACCCATTTCTCGCAACATGAGTTGAAATTTGGAAAA
131 GTTCAACC-CA-CCTCTCGC--AATATGAGTTGATTT-TTG-AACA-CA---G-AATTTGCCAAA
* * * * *
3347790 CA-AAATTGAAATTACCTCAGC-GTGTCCTG
185 CAGAATTTGAAAATACCTCGGCTGTGACCCG
* *
3347819 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACA-AAAATTTAAAAGAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACACAAAAATT--GA-AAATACC
* * * * * *
3347883 TCGGCATGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTGAAAAAAGTAGAAAT
62 TCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTG-AAAAAGTAGAAAT
*
3347947 TAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTGAACACAGAATTTGCCAAACAGAT
125 TAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTGAACACAGAATTTGCCAAACAGAA
3348012 TTTGAAAATACCTCGGCATGTGACCCG
190 TTTGAAAATACCTCGGC-TGTGACCCG
* * *
3348039 AGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTGAAAA-ACAGAAATT-AAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACACAAAAATTGAAAA
3348093 GGTTCAACTC
Statistics
Matches: 558, Mismatches: 79, Indels: 105
0.75 0.11 0.14
Matches are distributed among these distances:
192 3 0.01
193 3 0.01
194 9 0.02
195 6 0.01
196 8 0.01
197 2 0.00
198 1 0.00
199 65 0.12
200 38 0.07
201 9 0.02
202 7 0.01
203 12 0.02
208 1 0.00
209 1 0.00
213 2 0.00
214 79 0.14
215 122 0.22
216 21 0.04
217 13 0.02
218 44 0.08
219 49 0.09
220 28 0.05
221 1 0.00
222 5 0.01
223 10 0.02
224 7 0.01
225 6 0.01
226 3 0.01
227 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (215 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACACAAAAATTGAAAATACCTCAG
CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTGAAAAAGTAGAAATTAAAAG
GTTCAACCCACCTCTCGCAATATGAGTTGATTTTTGAACACAGAATTTGCCAAACAGAATTTGAA
AATACCTCGGCTGTGACCCG
Found at i:3347626 original size:72 final size:72
Alignment explanation
Indices: 3347536--3347938 Score: 476
Period size: 72 Copynumber: 5.6 Consensus size: 72
3347526 ATTAAAAGGT
* ** * * *
3347536 TCAACCCACCTCTCGCAATATGAGTTGACTTTTTGAAAGTAGAATTTGAAAATACCTC-G-GTGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAAAAAATTGAAATTACCTCAGCGTGT
*
3347599 GCCCGAGGC
65 -CCTGAGGC
*
3347608 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-AAAAATTGAAATTACCTCAGCGTGT
3347673 CCTGAGGC
65 CCTGAGGC
3347681 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTG-AAAAAAAAATTGAAATTACCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAATTGAAATTACCTCAGCGTGTC
3347744 CTGAGGC
66 CTGAGGC
* ** * ** * *
3347751 TCAACCCATTTCTCGCAACATGAGTTGAAATTTGGAAAACAAAATTGAAATTACCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAATTGAAATTACCTCAGCGTGTC
3347816 CTGAGGC
66 CTGAGGC
* *
3347823 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAAATTTAAAAGAAA-TACCTCGG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA-AAAAAATT----GAAATTACCTCAG
* * *
3347887 CATGACCCGAGGC
60 CGTGTCCTGAGGC
* *
3347900 TCAACTCACCTCT-GTATTATGAGTTGATTTTTGAAAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
3347939 GTAGAAATTA
Statistics
Matches: 292, Mismatches: 28, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
70 56 0.19
71 17 0.06
72 108 0.37
73 43 0.15
74 12 0.04
75 10 0.03
76 12 0.04
77 30 0.10
78 4 0.01
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (72 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAATTGAAATTACCTCAGCGTGTC
CTGAGGC
Found at i:3347820 original size:142 final size:143
Alignment explanation
Indices: 3347536--3347912 Score: 481
Period size: 142 Copynumber: 2.6 Consensus size: 143
3347526 ATTAAAAGGT
* * * *
3347536 TCAACCCACCTCTCGCAATATGAGTTGACTTTTTGAAAGTAGAATTTGAAAATACCTCGGTGTGC
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-AAAAAATTGAAAATACCTCGGTGTGC
* * **
3347601 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTC
64 CCGAGGCTCAACCCACCTCTCGCAACATGAGTTGAAATTTGAAAAACAGAAATTGAAATTACCTC
3347666 AGCGTGTCCTGAGGC
129 AGCGTGTCCTGAGGC
*
3347681 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAAAAAATTGAAATTACCTCAGCGTGT-C
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAATTGAAAATACCTC-G-GTGTGC
* ** *
3347744 CTGAGGCTCAACCCATTTCTCGCAACATGAGTTGAAATTTGGAAAACA-AAATTGAAATTACCTC
64 CCGAGGCTCAACCCACCTCTCGCAACATGAGTTGAAATTTGAAAAACAGAAATTGAAATTACCTC
3347808 AGCGTGTCCTGAGGC
129 AGCGTGTCCTGAGGC
* *
3347823 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAAATTTAAAAGAAATACCTCGGC
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA-AAAAA-TT--GA-AAATACCTCGGT
* *
3347888 ATGACCCGAGGCTCAACTCACCTCT
60 GTG-CCCGAGGCTCAACCCACCTCT
3347913 GTATTATGAG
Statistics
Matches: 200, Mismatches: 21, Indels: 18
0.84 0.09 0.08
Matches are distributed among these distances:
142 74 0.37
143 50 0.25
144 13 0.06
145 32 0.16
146 2 0.01
147 2 0.01
148 2 0.01
149 25 0.12
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (143 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAATTGAAAATACCTCGGTGTGCCC
GAGGCTCAACCCACCTCTCGCAACATGAGTTGAAATTTGAAAAACAGAAATTGAAATTACCTCAG
CGTGTCCTGAGGC
Found at i:3348137 original size:55 final size:54
Alignment explanation
Indices: 3348064--3348168 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 54
3348054 CTGTATTATG
3348064 AGTTGATTTTTGAAAAACAGAAATTAAAAGG-TTCAACTCACCTCTCGCAACATA
1 AGTTGATTTTTGAAAAACAGAAATTAAAAGGCTT-AACTCACCTCTCGCAACATA
* *
3348118 AGTTGATTTTTTGAAAAACAGGAATTAAAAGGCTTAACTCACTTCTCGCAA
1 AGTTGA-TTTTTGAAAAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAA
3348169 TATGAGTCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
54 6 0.13
55 39 0.83
56 2 0.04
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (54 bp):
AGTTGATTTTTGAAAAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATA
Found at i:3348324 original size:73 final size:71
Alignment explanation
Indices: 3348147--3348324 Score: 200
Period size: 73 Copynumber: 2.5 Consensus size: 71
3348137 AGGAATTAAA
* * *
3348147 AGGCTTAACTCACTTCTCGCAATATGAGTCAA--TTTAAAACATAAACTAAAAGTACCTCGGCGT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTAAAACAAAAACTAAAAGTACCTCAGCGT
*
3348210 GCCCCG
66 GACCCG
* * ** * *
3348216 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAACAAAAGGAATTAAAA-TACCTCAG
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTAAAAC-AAA--AACTAAAAGTACCTCAG
*
3348280 CGTGACCTG
63 CGTGACCCG
*
3348289 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTT
3348325 CCTTGGAAAG
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
69 27 0.31
71 7 0.08
72 2 0.02
73 45 0.51
74 7 0.08
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (71 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTAAAACAAAAACTAAAAGTACCTCAGCGT
GACCCG
Found at i:3361563 original size:10 final size:10
Alignment explanation
Indices: 3361550--3361608 Score: 91
Period size: 10 Copynumber: 5.7 Consensus size: 10
3361540 ATGAAAGAAA
3361550 ATGTATAGAT
1 ATGTATAGAT
3361560 ATGTATAGAT
1 ATGTATAGAT
*
3361570 ATGTATATGGAA
1 ATGTATA--GAT
3361582 ATGTATAGAT
1 ATGTATAGAT
3361592 ATGTATAGAT
1 ATGTATAGAT
3361602 ATGTATA
1 ATGTATA
3361609 TGGAAATCGA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
10 36 0.80
12 9 0.20
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (10 bp):
ATGTATAGAT
Found at i:3361589 original size:32 final size:32
Alignment explanation
Indices: 3361548--3361615 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
3361538 GGATGAAAGA
3361548 AAATGTATAGATATGTATAGATATGTATATGG
1 AAATGTATAGATATGTATAGATATGTATATGG
3361580 AAATGTATAGATATGTATAGATATGTATATGG
1 AAATGTATAGATATGTATAGATATGTATATGG
3361612 AAAT
1 AAAT
3361616 CGAAAGAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.37
Consensus pattern (32 bp):
AAATGTATAGATATGTATAGATATGTATATGG
Found at i:3362998 original size:69 final size:73
Alignment explanation
Indices: 3362911--3363093 Score: 293
Period size: 73 Copynumber: 2.6 Consensus size: 73
3362901 AATAAAAGGT
* * *
3362911 TCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAGA-AG-AATTGAAA-TACCTC-GGGTGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGC
3362972 CCCGAGGC
66 CCCGAGGC
*
3362980 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGC
*
3363045 CCTGAGGC
66 CCCGAGGC
3363053 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
3363094 TAACATGAAA
Statistics
Matches: 105, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
69 37 0.35
70 2 0.02
71 8 0.08
72 6 0.06
73 52 0.50
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (73 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGC
CCCGAGGC
Found at i:3381896 original size:43 final size:43
Alignment explanation
Indices: 3381835--3381921 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
3381825 TGTATGTATG
3381835 TATGTCGTATACGTACATGGATTCCACAATATTTATGGTATAA
1 TATGTCGTATACGTACATGGATTCCACAATATTTATGGTATAA
*
3381878 TATGTCGTATACGTACATGGATTCCACAATCTTTATGGTATAA
1 TATGTCGTATACGTACATGGATTCCACAATATTTATGGTATAA
3381921 T
1 T
3381922 TATTCTTTAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (43 bp):
TATGTCGTATACGTACATGGATTCCACAATATTTATGGTATAA
Found at i:3383849 original size:16 final size:16
Alignment explanation
Indices: 3383828--3383861 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3383818 GAGTTACCGA
*
3383828 TTCATTTATCAGATAT
1 TTCATTAATCAGATAT
*
3383844 TTCATTAATCCGATAT
1 TTCATTAATCAGATAT
3383860 TT
1 TT
3383862 TTTTTTCCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.50
Consensus pattern (16 bp):
TTCATTAATCAGATAT
Found at i:3386459 original size:39 final size:39
Alignment explanation
Indices: 3386392--3386467 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 39
3386382 TTCCATGAAA
** * *
3386392 GTTTTAGAAATTAAAAGGTTATCGATATAATTGTTTGGG
1 GTTTTAGAAATTAAAAACTCATCGATATAATTATTTGGG
3386431 GTTTTAGAAATTAAAAACTCATTC-ATATAATTATTTG
1 GTTTTAGAAATTAAAAACTCA-TCGATATAATTATTTG
3386468 AAGTCAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 30 0.94
40 2 0.06
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (39 bp):
GTTTTAGAAATTAAAAACTCATCGATATAATTATTTGGG
Found at i:3389189 original size:3 final size:3
Alignment explanation
Indices: 3389181--3389220 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
3389171 TTTTTATATT
3389181 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
3389221 GGAACAAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:3389377 original size:21 final size:21
Alignment explanation
Indices: 3389353--3389395 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
3389343 TCATTATCCC
*
3389353 CTCCTTGATCTCAAATAAATT
1 CTCCTTAATCTCAAATAAATT
3389374 CTCCTTAATCTCAAATAAATT
1 CTCCTTAATCTCAAATAAATT
3389395 C
1 C
3389396 AATAATGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (21 bp):
CTCCTTAATCTCAAATAAATT
Found at i:3389823 original size:31 final size:31
Alignment explanation
Indices: 3389781--3389844 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
3389771 ATTTCTTTAA
*
3389781 ATATATATATTTGAATCACAATTAAAATTTT
1 ATATATATATTTGAACCACAATTAAAATTTT
*
3389812 ATATATCTATTTGAACCACAATTAAAATTTT
1 ATATATATATTTGAACCACAATTAAAATTTT
3389843 AT
1 AT
3389845 GTATGTAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (31 bp):
ATATATATATTTGAACCACAATTAAAATTTT
Found at i:3398373 original size:20 final size:18
Alignment explanation
Indices: 3398329--3398375 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 18
3398319 TATACACATT
3398329 TAAAAATATAAAAAATTA
1 TAAAAATATAAAAAATTA
*
3398347 -AATAAATATATAAAACTTGA
1 TAA-AAATATA-AAAAATT-A
3398367 TAAAAATAT
1 TAAAAATAT
3398376 TTATAAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
17 2 0.08
18 7 0.29
19 6 0.25
20 7 0.29
21 2 0.08
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (18 bp):
TAAAAATATAAAAAATTA
Found at i:3398440 original size:31 final size:32
Alignment explanation
Indices: 3398378--3398441 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 32
3398368 AAAAATATTT
* *
3398378 ATAAAATCTAGAAAGAAATATAATTTATGAAA
1 ATAAAATCTACAAAGAAATATAATATATGAAA
*
3398410 ATAAAATTTACAAA-AAATATAATA-ATTGAAA
1 ATAAAATCTACAAAGAAATATAATATA-TGAAA
3398441 A
1 A
3398442 GAAATTAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 1 0.04
31 15 0.54
32 12 0.43
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.28
Consensus pattern (32 bp):
ATAAAATCTACAAAGAAATATAATATATGAAA
Found at i:3398897 original size:56 final size:56
Alignment explanation
Indices: 3398832--3398944 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
3398822 ATGGATCAAA
3398832 TTTAAAAGTGCTTTTAATATTTAAATATTTAATGTTACACTTTTCTATTTTTATTT
1 TTTAAAAGTGCTTTTAATATTTAAATATTTAATGTTACACTTTTCTATTTTTATTT
3398888 TTTAAAAGTGCTTTTAATATTTAAATATTTAATGTTACACTTTTCTATTTTTATTT
1 TTTAAAAGTGCTTTTAATATTTAAATATTTAATGTTACACTTTTCTATTTTTATTT
3398944 T
1 T
3398945 AAATAAATTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (56 bp):
TTTAAAAGTGCTTTTAATATTTAAATATTTAATGTTACACTTTTCTATTTTTATTT
Found at i:3398936 original size:28 final size:28
Alignment explanation
Indices: 3398849--3398937 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 28
3398839 GTGCTTTTAA
3398849 TATTTAAATATTTAATGTTACACTTTTC
1 TATTTAAATATTTAATGTTACACTTTTC
* * * * * *
3398877 TATTTTTATTTTTTAAAAG-T--GCTTTTAA
1 TA-TTTAAATATTT-AATGTTACACTTTT-C
3398905 TATTTAAATATTTAATGTTACACTTTTC
1 TATTTAAATATTTAATGTTACACTTTTC
3398933 TATTT
1 TATTT
3398938 TTATTTTAAA
Statistics
Matches: 43, Mismatches: 12, Indels: 12
0.64 0.18 0.18
Matches are distributed among these distances:
26 3 0.07
27 14 0.33
28 9 0.21
29 14 0.33
30 3 0.07
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.57
Consensus pattern (28 bp):
TATTTAAATATTTAATGTTACACTTTTC
Found at i:3399890 original size:4 final size:4
Alignment explanation
Indices: 3399881--3399905 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
3399871 ATAAAGGTAA
3399881 GCAT GCAT GCAT GCAT GCAT GCAT G
1 GCAT GCAT GCAT GCAT GCAT GCAT G
3399906 TATGTATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (4 bp):
GCAT
Done.