Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 105 of 295
Found at i:31283403 original size:45 final size:44
Alignment explanation
Indices: 31283221--31283430 Score: 173
Period size: 45 Copynumber: 4.7 Consensus size: 44
31283211 AAATTATAGA
31283221 TCTTATCTCCATGTATCAGCTATGGAGCAGATC-AGAAATGGCGAG
1 TCTTATCTCCATGTATCAGCTATGGAGCAGATCGA-AAATGGC-AG
* *** **
31283266 TCTTATCTCCATATATCAGCTATGGAGCAGATTTTAGCT-GCAGG
1 TCTTATCTCCATGTATCAGCTATGGAGCAGATCGAAAATGGCA-G
* * * **
31283310 TCTTATCCTCC-TGAAGT-TGC-A-GGAAACAGA-CTGAAAATTACAG
1 TCTTAT-CTCCATGTA-TCAGCTATGG-AGCAGATC-GAAAATGGCAG
*
31283353 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
1 -TCTTATCTCCATGTATCAGCTATGGAGCAGATCGAAAATGGC-AG
*
31283399 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 TCTTATCTCCATGTATCAGCTATGGAGCAGAT
31283431 TTAGCCACCA
Statistics
Matches: 131, Mismatches: 20, Indels: 28
0.73 0.11 0.16
Matches are distributed among these distances:
42 2 0.02
43 15 0.11
44 26 0.20
45 83 0.63
46 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCATGTATCAGCTATGGAGCAGATCGAAAATGGCAG
Found at i:31283719 original size:178 final size:176
Alignment explanation
Indices: 31283309--31283794 Score: 720
Period size: 178 Copynumber: 2.7 Consensus size: 176
31283299 TTAGCTGCAG
* *
31283309 GTCTTATCCTCCTGAAGTTGCAGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGC
1 GTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGC
*
31283374 TATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAGCCAC
66 TATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAGCCAC
* * **
31283439 CACCCTTATCTCTCTGAGGTAGCAAGAGAGTTGGTTGAAGATAAAA
131 CACCCTCATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATAAAA
* *
31283485 GTCTTATCTTCCTGAAGTTGCAGGAAGTAGACTAAAAATTTACAGATCTTATCTCCATGTATCGG
1 GTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATGTATCGG
* * * *
31283550 CTATGGAGCAGATAAAAAATGGTGAATTTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
65 CTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGA-TTTAGCC
* * * *
31283615 ATCAGCCTCATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAT
129 ACCACCCTCATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATAAAA
* * * * *
31283663 GTCTTATCTTCCTGAAGTTGTAAGAAGCAAATTGAAAAGTTACAGATTTTATCTCCATGTATCGG
1 GTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAA-TTACAGATCTTATCTCCATGTATCGG
* *
31283728 CTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGAATTTAACC
65 CTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAG-ATTTAGCC
31283793 AC
129 AC
31283795 TAATCTTATC
Statistics
Matches: 275, Mismatches: 32, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
176 34 0.12
177 78 0.28
178 162 0.59
179 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (176 bp):
GTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGC
TATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAGCCAC
CACCCTCATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATAAAA
Found at i:31283824 original size:134 final size:134
Alignment explanation
Indices: 31283664--31284061 Score: 584
Period size: 134 Copynumber: 3.0 Consensus size: 134
31283654 AAGATACATG
* * * * * *
31283664 TCTTATCTTCCTGAAGTTGTAAGAAGCAAATTGAAAAGTTACAGATTTTATCTCCATGTATCGGC
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAAGTTACAGATCTTATCTCCATGTATCGAC
* *
31283729 TATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGAATTTAACCA
66 TATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
31283794 CTAA
131 CTAA
*
31283798 TCTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAAAGTTACAGATCTTATCTCCATGTATCGAC
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAAGTTACAGATCTTATCTCCATGTATCGAC
* * **
31283863 TATGGAGTAGATCAGAAATGGCGAGTCTTATCT-CATGTATCAGCTATGCTGCAGATTTTAGCCA
66 TATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
*
31283927 CTAG
131 CTAA
*
31283931 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAA-TTATAGATCTTATCTCCATGTATCGA
1 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAA-AAGTTACAGATCTTATCTCCATGTATCGA
* * * * * *
31283995 CTATGGAGCAGATAAAAAATGGTGAGTTTTATCCCCATGTATCGGTTATGGAGCAGATTTTAGCC
65 CTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
31284060 AC
130 AC
31284062 CAGCCTTATC
Statistics
Matches: 236, Mismatches: 26, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
133 116 0.49
134 120 0.51
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (134 bp):
TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAAGTTACAGATCTTATCTCCATGTATCGAC
TATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
CTAA
Found at i:31284217 original size:45 final size:45
Alignment explanation
Indices: 31284143--31284229 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
31284133 AGGAGACTAA
*
31284143 AAATTACAAATCTTATCTCCATATATCGGCTATGGAGCAGATCAG
1 AAATGACAAATCTTATCTCCATATATCGGCTATGGAGCAGATCAG
*
31284188 AAATGACAAGTCTTATCTCCATATATCGGCTATGGAGCAGAT
1 AAATGACAAATCTTATCTCCATATATCGGCTATGGAGCAGAT
31284230 TTTAGCCATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (45 bp):
AAATGACAAATCTTATCTCCATATATCGGCTATGGAGCAGATCAG
Found at i:31284275 original size:177 final size:178
Alignment explanation
Indices: 31283926--31284305 Score: 437
Period size: 177 Copynumber: 2.1 Consensus size: 178
31283916 GATTTTAGCC
* * * * * *
31283926 ACTAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAGAATTATAGATCTTATCTCCATGTA
1 ACTAGTCTTATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAAATTACAAATCTTATCTCCATATA
*** * * *
31283991 TCGACTATGGAGCAGATAAAAAATGGTGAGTTTTATCCCCATGTATCGGTTATGGAGCAGATTTT
66 TCGACTATGGAGCAGATAAAAAATGACAAGTCTTATCCCCATATATCGGCTATGGAGCAGATTTT
* * * *
31284056 AGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA-T
131 AGCCACCAGCCTCATCTCCCTGAAGTAGCAAGAGAACAGGTTGAA-ATT
* *
31284104 ACTAGTCTTATCTTCTTGAAGTTGTAAGAAGGAGACT-AAAAATTACAAATCTTATCTCCATATA
1 ACTAGTCTTATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAAATTACAAATCTTATCTCCATATA
* * * *
31284168 TCGGCTATGGAGCAGATCAGAAATGACAAGTCTTATCTCCATATATCGGCTATGGAGCAGATTTT
66 TCGACTATGGAGCAGATAAAAAATGACAAGTCTTATCCCCATATATCGGCTATGGAGCAGATTTT
** * *
31284233 AGCCA-TTGACCTCATCTCCCTGAAGTTGC-AGTGGAACAGGTTGAAATT
131 AGCCACCAG-CCTCATCTCCCTGAAGTAGCAAG-AGAACAGGTTGAAATT
**
31284281 AC-AAACGTTATCTTCTTGAAGTTGC
1 ACTAGTC-TTATCTTCTTGAAGTTGC
31284306 TGTAGGACTA
Statistics
Matches: 169, Mismatches: 29, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
176 6 0.04
177 130 0.77
178 33 0.20
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (178 bp):
ACTAGTCTTATCTTCTTGAAGTTGCAAGAAGCAGACTGAAAAATTACAAATCTTATCTCCATATA
TCGACTATGGAGCAGATAAAAAATGACAAGTCTTATCCCCATATATCGGCTATGGAGCAGATTTT
AGCCACCAGCCTCATCTCCCTGAAGTAGCAAGAGAACAGGTTGAAATT
Found at i:31285114 original size:15 final size:14
Alignment explanation
Indices: 31285091--31285122 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
31285081 TTTTAAATAT
31285091 TATATTATTATTTA
1 TATATTATTATTTA
31285105 TATATATATTATTTA
1 TATAT-TATTATTTA
31285120 TAT
1 TAT
31285123 TAAGCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATATTATTATTTA
Found at i:31285117 original size:21 final size:18
Alignment explanation
Indices: 31285078--31285118 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
31285068 CTTTTATGAA
31285078 TATTTTTAAATATTATAT
1 TATTTTTAAATATTATAT
*
31285096 TATTATTTATATA-TATAT
1 TATT-TTTAAATATTATAT
31285114 TATTT
1 TATTT
31285119 ATATTAAGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 13 0.62
19 7 0.33
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TATTTTTAAATATTATAT
Found at i:31285925 original size:129 final size:128
Alignment explanation
Indices: 31285757--31286193 Score: 518
Period size: 129 Copynumber: 3.4 Consensus size: 128
31285747 CTTAAGGGAT
* * *
31285757 TATTTCGTGTTTGGAG-GTCCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTTCCGTT
1 TATTTCATGTTTGGAGAGTCTGAGAAATCGTGCCCAATCGTGCTGGGTTTCGA-TTTTTTCCATT
* * *
31285821 CAACTAAAATACGAAATATCCTTTGGAAATTTTGTCCATGCTTTT-TAAAACTAAAACGAGGCAA
65 CGACTAAAATACGAAATATCCTTTTGAAATTTTATCCATG-TTTTCTAAAACTAAAACGAGGCAA
* *
31285885 TATTTCATGTTTGGAGAGTCTGAGAGATCGTGCCCAATCGTGCTGGGTTTC-AATTTTT-CATTC
1 TATTTCATGTTTGGAGAGTCTGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTCCATTC
** * *
31285948 GACTAAAATACGAAATAGCTTTTTTTTGAAATTTTATTCATGTTTTCTTAAACTAAAACGAGGCA
66 GACTAAAATACGAAATA---TCCTTTTGAAATTTTATCCATGTTTTCTAAAACTAAAACGAGGCA
31286013 A
128 A
* *
31286014 TATTT-AGTGTTTGGA-AGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGA--TTTTCCATT
1 TATTTCA-TGTTTGGAGAGTCTGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTCCATT
* * * *
31286075 CGACTAAAATAC-AGAATATCCTTTTGAAATTTCATCCATGTTTTCTCAAATTAAAATGAGGCAA
65 CGACTAAAATACGA-AATATCCTTTTGAAATTTTATCCATGTTTTCTAAAACTAAAACGAGGCAA
* * * * *
31286139 TGTTTCATATTTGAAAATTC-G-GTAAATCGTGCCCAATCGTGCTGGGTTTCGATTT
1 TATTTCATGTTTGGAGAGTCTGAG-AAATCGTGCCCAATCGTGCTGGGTTTCGATTT
31286194 ACCGTTTGGG
Statistics
Matches: 269, Mismatches: 26, Indels: 29
0.83 0.08 0.09
Matches are distributed among these distances:
124 1 0.00
125 78 0.29
126 23 0.09
127 11 0.04
128 75 0.28
129 81 0.30
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (128 bp):
TATTTCATGTTTGGAGAGTCTGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTCCATTC
GACTAAAATACGAAATATCCTTTTGAAATTTTATCCATGTTTTCTAAAACTAAAACGAGGCAA
Found at i:31286075 original size:128 final size:125
Alignment explanation
Indices: 31285757--31286193 Score: 513
Period size: 125 Copynumber: 3.4 Consensus size: 125
31285747 CTTAAGGGAT
* * *
31285757 TATTTCGTGTTTGGAGGTCCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTTCCGTTC
1 TATTTCATGTTTGGAAGTCCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGA---TTTTCCATTC
* * *
31285822 AACTAAAATACGAAATATCCTTTGGAAATTTTGTCCATGCTTTT-TAAAACTAAAACGAGGCAA
63 GACTAAAATACGAAATATCCTTTTGAAATTTTATCCATG-TTTTCTAAAACTAAAACGAGGCAA
* * * *
31285885 TATTTCATGTTTGGAGAGTCTGAGAGATCGTGCCCAATCGTGCTGGGTTTCAATTTTTCATTCGA
1 TATTTCATGTTTGGA-AGTCCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTCCATTCGA
** * *
31285950 CTAAAATACGAAATAGCTTTTTTTTGAAATTTTATTCATGTTTTCTTAAACTAAAACGAGGCAA
65 CTAAAATACGAAATA---TCCTTTTGAAATTTTATCCATGTTTTCTAAAACTAAAACGAGGCAA
** *
31286014 TATTT-AGTGTTTGGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTCCATTCGA
1 TATTTCA-TGTTTGGAAGTCCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTCCATTCGA
* * * *
31286078 CTAAAATAC-AGAATATCCTTTTGAAATTTCATCCATGTTTTCTCAAATTAAAATGAGGCAA
65 CTAAAATACGA-AATATCCTTTTGAAATTTTATCCATGTTTTCTAAAACTAAAACGAGGCAA
* * * * *
31286139 TGTTTCATATTTGAAAATTCG-GTAAATCGTGCCCAATCGTGCTGGGTTTCGATTT
1 TATTTCATGTTTGGAAGTCCGAG-AAATCGTGCCCAATCGTGCTGGGTTTCGATTT
31286194 ACCGTTTGGG
Statistics
Matches: 270, Mismatches: 30, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
124 1 0.00
125 84 0.31
126 25 0.09
127 1 0.00
128 78 0.29
129 81 0.30
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (125 bp):
TATTTCATGTTTGGAAGTCCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTCCATTCGAC
TAAAATACGAAATATCCTTTTGAAATTTTATCCATGTTTTCTAAAACTAAAACGAGGCAA
Found at i:31287491 original size:15 final size:12
Alignment explanation
Indices: 31287460--31287484 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
31287450 TTATTATAAA
31287460 AATAATATACTT
1 AATAATATACTT
31287472 AATAATATACTT
1 AATAATATACTT
31287484 A
1 A
31287485 CTCATAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAATATACTT
Found at i:31293712 original size:21 final size:21
Alignment explanation
Indices: 31293678--31293719 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
31293668 TACAACATTC
** *
31293678 AAAAATCCTTAAAATTATAAA
1 AAAAATCCCAAAAAATATAAA
31293699 AAAAATCCCAAAAAATATAAA
1 AAAAATCCCAAAAAATATAAA
31293720 GTAAATTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (21 bp):
AAAAATCCCAAAAAATATAAA
Found at i:31301729 original size:208 final size:213
Alignment explanation
Indices: 31301255--31301746 Score: 578
Period size: 216 Copynumber: 2.3 Consensus size: 213
31301245 TAACAGCAAT
31301255 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
1 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
* * * *
31301320 AAACGCAATAGCTTAATTATCTGTTTTGATTTTGTTGGGTTCGTAGTTTTGAGCACTTAGGGACT
66 AAACGCAATAGCTTAATTATCTATTTTAATTTTGTTGGGTTCGGAGTTTTGAGCACTCAGGGACT
* * * * *
31301385 TAACGGGCCCTAATATAGTTAATATAAATTACATTTTTTTTTAAAATAATAGCTGAGAACTATAT
131 TAACAGGCCCTAATATAGCTAATATAAATTACAGTTTTTTTTAAAATAATAGCTGAGAACCACAT
*
31301450 TAATTAAGATACATAGTCAGA
196 CAATTAAG--ACATAG-CAGA
* * *
31301471 GCGTTTGTAATCCAACGGTTAGGATAATTGCCTTCCAAGTAATAGACCCGGGTTCGACTCCTGGC
1 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
* *
31301536 AAACGCAATAG-TAGTAATT-T-TATTTTCAATTTCCTTTTTGGGTTTGGA-TTTTGAGCACTCA
66 AAACGCAATAGCT--TAATTATCTATTTT-AA-TT--TTGTTGGGTTCGGAGTTTTGAGCACTCA
* ** ** *
31301597 GGGACTTCAACAGGCCCTAATATAGCTAATATAAGTTAC-GTTTTTTTT-AAA-AATATTTTCGT
125 GGGACTT-AACAGGCCCTAATATAGCTAATATAAATTACAGTTTTTTTTAAAATAATAGCTGAGA
*
31301659 ACCACA-CAGTT-AG-C-T-G-AGAA
189 ACCACATCAATTAAGACATAGCAG-A
* *
31301679 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATTGACCCGGGTTCGACTCCCGCC
1 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
31301744 AAA
66 AAA
31301747 AGAAGCTCTG
Statistics
Matches: 241, Mismatches: 27, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
207 2 0.01
208 64 0.27
209 1 0.00
210 1 0.00
211 1 0.00
214 2 0.01
215 9 0.04
216 85 0.35
217 10 0.04
218 27 0.11
219 39 0.16
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (213 bp):
GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
AAACGCAATAGCTTAATTATCTATTTTAATTTTGTTGGGTTCGGAGTTTTGAGCACTCAGGGACT
TAACAGGCCCTAATATAGCTAATATAAATTACAGTTTTTTTTAAAATAATAGCTGAGAACCACAT
CAATTAAGACATAGCAGA
Found at i:31305101 original size:14 final size:14
Alignment explanation
Indices: 31305073--31305105 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
31305063 CGATACTATG
31305073 TTTAA-ATTTAAAT
1 TTTAATATTTAAAT
*
31305086 TTTAATATTTATAT
1 TTTAATATTTAAAT
31305100 TTTAAT
1 TTTAAT
31305106 TTGACATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTAATATTTAAAT
Found at i:31306114 original size:20 final size:20
Alignment explanation
Indices: 31306089--31306128 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
31306079 GAAAGTTTAA
31306089 TTTGAAAATCGTAGATGAGG
1 TTTGAAAATCGTAGATGAGG
31306109 TTTGAAAATCGTAGATGAGG
1 TTTGAAAATCGTAGATGAGG
31306129 AGGAAGATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.30, T:0.30
Consensus pattern (20 bp):
TTTGAAAATCGTAGATGAGG
Found at i:31313231 original size:19 final size:19
Alignment explanation
Indices: 31313207--31313249 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
31313197 AAAATATTAT
31313207 ATTAATTTTAATTAATTTG
1 ATTAATTTTAATTAATTTG
* * *
31313226 ATTAATTTTATTTTATTTT
1 ATTAATTTTAATTAATTTG
31313245 ATTAA
1 ATTAA
31313250 AATTAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTAATTTTAATTAATTTG
Found at i:31322612 original size:20 final size:21
Alignment explanation
Indices: 31322573--31322612 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
31322563 GTCGAGTTGG
31322573 TCACACGGGAGTGTTGCCCTT
1 TCACACGGGAGTGTTGCCCTT
* *
31322594 TCACACTGGCGTG-TGCCCT
1 TCACACGGGAGTGTTGCCCT
31322613 GTTTTAAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.33, G:0.28, T:0.28
Consensus pattern (21 bp):
TCACACGGGAGTGTTGCCCTT
Found at i:31324587 original size:16 final size:16
Alignment explanation
Indices: 31324566--31324596 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31324556 CTATGCATGC
*
31324566 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
31324582 AAAATACAAAAGACA
1 AAAATACAAAAGACA
31324597 TAATAGTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:31327488 original size:50 final size:49
Alignment explanation
Indices: 31327375--31327550 Score: 217
Period size: 50 Copynumber: 3.5 Consensus size: 49
31327365 TGAGGTCGCA
* * * * * *
31327375 TGTGTAGTACTAAGTGCAGGCTATTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAA-TT-GGTCACG
* **
31327426 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCACG
* * *
31327476 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACG
31327525 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
31327551 TGCGTACCAG
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
49 31 0.28
50 46 0.42
51 32 0.29
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACG
Found at i:31329858 original size:18 final size:18
Alignment explanation
Indices: 31329835--31329869 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31329825 TTTAAGAAGG
*
31329835 GTTTTCAATGAAAACACA
1 GTTTTCAATAAAAACACA
*
31329853 GTTTTCACTAAAAACAC
1 GTTTTCAATAAAAACAC
31329870 TTCAATGAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATAAAAACACA
Found at i:31332478 original size:29 final size:29
Alignment explanation
Indices: 31332417--31332551 Score: 100
Period size: 28 Copynumber: 4.7 Consensus size: 29
31332407 ATAATGTGAT
** * ** *
31332417 TTGGGCCTAGCGGGCCATATAAAGGTGAT
1 TTGGGCCTAATGGGCCATATGAATATGAA
31332446 TTGGGCCTAATGGGCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
* * *
31332475 TTGGG-CTGATGGGTCGA-ATGAATGTGAA
1 TTGGGCCTAATGGG-CCATATGAATATGAA
* *
31332503 TTGGGCATAATGGGCTATATG-A-ATGAGA
1 TTGGGCCTAATGGGCCATATGAATATGA-A
*
31332531 TTGGGCC-AAGTGGGCTATATG
1 TTGGGCCTAA-TGGGCCATATG
31332552 CATGTATGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
27 5 0.06
28 43 0.49
29 39 0.45
ACGTcount: A:0.27, C:0.12, G:0.34, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATATGAA
Found at i:31333631 original size:17 final size:18
Alignment explanation
Indices: 31333598--31333632 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
31333588 TTTTAAGAAG
31333598 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
31333616 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
31333633 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:31337174 original size:47 final size:48
Alignment explanation
Indices: 31337064--31337231 Score: 159
Period size: 47 Copynumber: 3.6 Consensus size: 48
31337054 ACATTTGTGT
* * * * * *
31337064 GCTAGTGTAAGACATGTCCGAGACAT-GCATCGGCCA-C-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATTGGTCATCGA-GACGAGA
*
31337110 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGG-CATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATTGGTCATCGAGACGAGA
* * * *
31337158 GCTAGTGTAAGACATGTCTAGGATAT-GCATTGGTCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGGCATTGGTCATCGAGACG-AGA
*
31337205 GCCAGTGTAAGACATGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
31337232 CATCGGCTAC
Statistics
Matches: 101, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
46 19 0.19
47 57 0.56
48 24 0.24
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATTGGTCATCGAGACGAGA
Found at i:31337233 original size:47 final size:47
Alignment explanation
Indices: 31337113--31337280 Score: 159
Period size: 47 Copynumber: 3.6 Consensus size: 47
31337103 TATGAGAGCT
* * * *
31337113 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGCCTCGAGATGTA-AGCC
* *
31337161 AGTGTAAGA-CATGTCTAGGATATGCATTGGTCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATTGG-CCTCGAGATGTAAGCC
* * * *
31337208 AGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACAAAATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATTGGCCT-CGAGATGTAAGCC
31337252 AGTGTAAGACCATGTCTGGGACATTGCAT
1 AGTGTAAGACCATGTCTGGGACA-TGCAT
31337281 CAGGATGGAT
Statistics
Matches: 103, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
44 11 0.11
45 15 0.15
46 18 0.17
47 49 0.48
48 10 0.10
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGAGATGTAAGCC
Found at i:31344379 original size:93 final size:93
Alignment explanation
Indices: 31344272--31344535 Score: 465
Period size: 93 Copynumber: 2.8 Consensus size: 93
31344262 GCCCATAAGT
* *
31344272 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
31344337 CGAGCTCGGATGCCTAGTTACATCTTAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
31344365 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
31344430 TGAGCTTGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
31344458 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
31344523 CGAGTTCGGATGC
66 CGAGCTCGGATGC
31344536 TTAACCATCC
Statistics
Matches: 161, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 161 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:31344551 original size:46 final size:47
Alignment explanation
Indices: 31344264--31344532 Score: 283
Period size: 46 Copynumber: 5.8 Consensus size: 47
31344254 TGTAACCCGC
*
31344264 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-GCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
31344310 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCAT
* * *
31344360 -C-TTA-CGAACTCGGACTCAACTCAATGAGTTCGGA-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
31344403 CCATAAGTGAACTCGGACTCAACTCAATGAGCTT-GGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA-G-C-A-TTCGCAT
* *
31344453 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
31344496 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
31344533 TGCTTAACCA
Statistics
Matches: 186, Mismatches: 17, Indels: 40
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 4 0.02
45 4 0.02
46 92 0.49
47 54 0.29
48 5 0.03
49 4 0.02
50 7 0.04
51 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:31345578 original size:20 final size:20
Alignment explanation
Indices: 31345540--31345579 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
31345530 CCAGCCATCA
** *
31345540 CACTTTAAATGGCCTAATTT
1 CACTTTAAATACCCCAATTT
31345560 CACTTTAAATACCCCAATTT
1 CACTTTAAATACCCCAATTT
31345580 AAGATCCAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.38
Consensus pattern (20 bp):
CACTTTAAATACCCCAATTT
Found at i:31355830 original size:22 final size:22
Alignment explanation
Indices: 31355805--31355855 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
31355795 AATTCTATGC
31355805 TAAATTGATAA-AGAT-TAATATA
1 TAAATT-ATAATAGATATAAT-TA
31355827 TAAATTATAATAGATATAATTA
1 TAAATTATAATAGATATAATTA
31355849 TAAATTA
1 TAAATTA
31355856 AAGATTATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.15
22 19 0.70
23 4 0.15
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (22 bp):
TAAATTATAATAGATATAATTA
Found at i:31389417 original size:9 final size:9
Alignment explanation
Indices: 31389403--31389427 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
31389393 CTTTGACAAG
31389403 AAGGGTGCC
1 AAGGGTGCC
31389412 AAGGGTGCC
1 AAGGGTGCC
31389421 AAGGGTG
1 AAGGGTG
31389428 GCCGGAGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.16, G:0.48, T:0.12
Consensus pattern (9 bp):
AAGGGTGCC
Found at i:31397144 original size:40 final size:39
Alignment explanation
Indices: 31397087--31397351 Score: 228
Period size: 40 Copynumber: 6.6 Consensus size: 39
31397077 AATTATTGTA
* ** *
31397087 TGAATACACATACGTGCCCCTGATTGTACTTCAATACTAC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTAC-CC
* * *
31397127 TGAATGCACATATGTGCCCCTGTTTGTACTTCGATACCCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTA-CCC
*** * *
31397167 TGAATGCACACGTGTGCCCCTGTTTGTACTTTGGTACCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCC
* * *
31397206 TTAAATGTACATACGTGCCCCT-ATTTGTACTTCAGTACCC
1 -TGAATGCACATACGTGCCCCTGA-TTGTACTTCGGTACCC
* *
31397246 TTAGATGCACATACATGCCCCT-ATTTGTACTTCGGTACCCC
1 TGA-ATGCACATACGTGCCCCTGA-TTGTACTTCGGTA-CCC
* * *
31397287 TAAATGCACATACGTGCCCTTGATTGTACTTCGGTACTTC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTAC-CC
* * * *
31397327 TGAAAGCATATACATGCTCCTGATT
1 TGAATGCACATACGTGCCCCTGATT
31397352 TTATTCTGGT
Statistics
Matches: 187, Mismatches: 31, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
39 6 0.03
40 174 0.93
41 7 0.04
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (39 bp):
TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCC
Found at i:31397234 original size:20 final size:20
Alignment explanation
Indices: 31397211--31397275 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
31397201 TACCCTTAAA
31397211 TGTACATACGTGCCCCTATT
1 TGTACATACGTGCCCCTATT
* * * **
31397231 TGTAC-TTCAGTACCCTTAGA
1 TGTACATAC-GTGCCCCTATT
* *
31397251 TGCACATACATGCCCCTATT
1 TGTACATACGTGCCCCTATT
31397271 TGTAC
1 TGTAC
31397276 TTCGGTACCC
Statistics
Matches: 30, Mismatches: 13, Indels: 4
0.64 0.28 0.09
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (20 bp):
TGTACATACGTGCCCCTATT
Found at i:31397254 original size:120 final size:120
Alignment explanation
Indices: 31397094--31397323 Score: 302
Period size: 120 Copynumber: 1.9 Consensus size: 120
31397084 GTATGAATAC
** *
31397094 ACATACGTGCCCCTGATTGTACTTCAATACTACTGAATGCACATATGTGCCCCTGTTTGTACTTC
1 ACATACGTGCCCCTGATTGTACTTCAATACTACTGAATGCACATACATGCCCCTATTTGTACTTC
* ** * *
31397159 GATACCCCTGAATGCACACGTGTGCCCCTGTTTGTACTTTGGTACCCTTAAATGT
66 GATACCCCTAAATGCACACACGTGCCCCTGATTGTACTTCGGTACCCTTAAATGT
* * *
31397214 ACATACGTGCCCCT-ATTTGTACTTCAGTAC-CCTTAGATGCACATACATGCCCCTATTTGTACT
1 ACATACGTGCCCCTGA-TTGTACTTCAATACTACTGA-ATGCACATACATGCCCCTATTTGTACT
* * *
31397277 TCGGTACCCCTAAATGCACATACGTGCCCTTGATTGTACTTCGGTAC
64 TCGATACCCCTAAATGCACACACGTGCCCCTGATTGTACTTCGGTAC
31397324 TTCTGAAAGC
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
119 4 0.04
120 90 0.96
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.33
Consensus pattern (120 bp):
ACATACGTGCCCCTGATTGTACTTCAATACTACTGAATGCACATACATGCCCCTATTTGTACTTC
GATACCCCTAAATGCACACACGTGCCCCTGATTGTACTTCGGTACCCTTAAATGT
Found at i:31399688 original size:15 final size:16
Alignment explanation
Indices: 31399670--31399703 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
31399660 AAATTAAATT
*
31399670 AATTAA-CTAGATGCA
1 AATTAACCTAAATGCA
31399685 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
31399701 AAT
1 AAT
31399704 GAGATGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:31402205 original size:17 final size:17
Alignment explanation
Indices: 31402166--31402205 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
31402156 GAAGAGTCCA
*
31402166 CCAAACCCTAGAGTTCG
1 CCAAATCCTAGAGTTCG
* *
31402183 CCAAATCCTGGAGTTTG
1 CCAAATCCTAGAGTTCG
31402200 CCAAAT
1 CCAAAT
31402206 GATGAATCCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (17 bp):
CCAAATCCTAGAGTTCG
Found at i:31414776 original size:29 final size:31
Alignment explanation
Indices: 31414711--31414777 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 31
31414701 TTACATGCAT
*
31414711 AAATAAATTTAAAAGAAAAAAATATATATAC
1 AAATAAATTTAAAAGAAAAAAATATACATAC
* * *
31414742 ATAATAGATTTAAAAG-AAAATATTTACATA-
1 A-AATAAATTTAAAAGAAAAAAATATACATAC
31414772 AAATAA
1 AAATAA
31414778 TATGAAATCA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
29 4 0.13
30 1 0.03
31 12 0.40
32 13 0.43
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.28
Consensus pattern (31 bp):
AAATAAATTTAAAAGAAAAAAATATACATAC
Found at i:31415067 original size:17 final size:18
Alignment explanation
Indices: 31415047--31415080 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31415037 ATAATAAATC
31415047 AATTA-AAAAAATAAAAG
1 AATTACAAAAAATAAAAG
*
31415064 AATTACAAAGAATAAAA
1 AATTACAAAAAATAAAA
31415081 ACGTAAACTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.18
Consensus pattern (18 bp):
AATTACAAAAAATAAAAG
Found at i:31416737 original size:133 final size:133
Alignment explanation
Indices: 31416580--31416857 Score: 396
Period size: 133 Copynumber: 2.1 Consensus size: 133
31416570 CTCTCTTACT
* * *
31416580 ACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGA-TCT
1 ACCTCAGGGAGACAAGGCTAGTGGCTAAAATCTGCTCCATTATCGATACATGGAGATAAGATTC-
* * * * *
31416644 GCCGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTTTGCTTCAC
65 ACCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAGTCTGCTCCAC
31416709 TGCA
130 TGCA
* * * * *
31416713 ACTTTAGGGAGACAAGGCTGGTGGCTTAAATTTGCTCCATTATCGATACATGGAGATAAGATTCA
1 ACCTCAGGGAGACAAGGCTAGTGGCTAAAATCTGCTCCATTATCGATACATGGAGATAAGATTCA
* * *
31416778 CCGTTTTTGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTTCAGTCTGCTCCACT
66 CCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAGTCTGCTCCACT
31416843 GCA
131 GCA
31416846 ACCTCAGGGAGA
1 ACCTCAGGGAGA
31416858 TAGGACTTGT
Statistics
Matches: 126, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
133 124 0.98
134 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (133 bp):
ACCTCAGGGAGACAAGGCTAGTGGCTAAAATCTGCTCCATTATCGATACATGGAGATAAGATTCA
CCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAGTCTGCTCCACT
GCA
Found at i:31416836 original size:44 final size:43
Alignment explanation
Indices: 31416788--31417019 Score: 139
Period size: 44 Copynumber: 5.3 Consensus size: 43
31416778 CCGTTTTTGA
31416788 TCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTTCAG
1 TCTGCTCCACTACTGCTTAAGGAGATAAGATCTGT-ATTTTCAG
* ** * * * * *
31416832 TCTGCTCCACTGCAACCTCAGGGAGATAGGA-CTTGTATATTGAG
1 TCTGCTCCACTAC-TGCTTAAGGAGATAAGATC-TGTATTTTCAG
** * *
31416876 TCTGCTCCACTACTGCTTCAAGGAGATAAGA-CTAGTGGTTTAAA
1 TCTGCTCCACTACTGCTT-AAGGAGATAAGATCT-GTATTTTCAG
* * * * * * *
31416920 TCTGCTCCATTGCCG-ATACATGGAGATAAGATCCGTCGTCTTC-G
1 TCTGCTCCACTACTGCTTA-A-GGAGATAAGATCTGT-ATTTTCAG
* * * *
31416964 ATCTGTTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTTAG
1 -TCTGCTCCACTACTGCTTAAGGAGATAAGATCTGT-ATTTTCAG
31417009 TCTGCTCCACT
1 TCTGCTCCACT
31417020 GCAATCTCAG
Statistics
Matches: 136, Mismatches: 41, Indels: 22
0.68 0.21 0.11
Matches are distributed among these distances:
42 1 0.01
43 5 0.04
44 98 0.72
45 30 0.22
46 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (43 bp):
TCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTATTTTCAG
Found at i:31416901 original size:133 final size:133
Alignment explanation
Indices: 31416580--31416906 Score: 327
Period size: 133 Copynumber: 2.5 Consensus size: 133
31416570 CTCTCTTACT
* * * * * * * * * *
31416580 ACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATCTG
1 ACCTCAGGGAGACAAGGCTGGTAGATTAAATCTGCTCCACTATCGATACAAGGAGATAAGATCTA
* * * *
31416645 CCGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTTTGCTTCACT
66 CCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAGTCTGCTCCACT
31416710 GCA
131 GCA
* * * * * * *
31416713 ACTTTAGGGAGACAAGGCTGGTGGCTTAAATTTGCTCCATTATCGATACATGGAGATAAGAT-TC
1 ACCTCAGGGAGACAAGGCTGGTAGATTAAATCTGCTCCACTATCGATACAAGGAGATAAGATCT-
* * *
31416777 ACCGTTTTTGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTTCAGTCTGCTCCAC
65 ACCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAGTCTGCTCCAC
31416842 TGCA
130 TGCA
* * * * * * *
31416846 ACCTCAGGGAGA-TAGGACTTGTATATTGAGTCTGCTCCACTA-CTGCTTCAAGGAGATAAGA
1 ACCTCAGGGAGACAAGG-CTGGTAGATTAAATCTGCTCCACTATC-GATACAAGGAGATAAGA
31416907 CTAGTGGTTT
Statistics
Matches: 161, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
132 5 0.03
133 156 0.97
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (133 bp):
ACCTCAGGGAGACAAGGCTGGTAGATTAAATCTGCTCCACTATCGATACAAGGAGATAAGATCTA
CCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAGTCTGCTCCACT
GCA
Found at i:31416929 original size:177 final size:177
Alignment explanation
Indices: 31416706--31417528 Score: 1026
Period size: 177 Copynumber: 4.6 Consensus size: 177
31416696 CAGTTTGCTT
* * * * * * * *
31416706 CACTGCAACTTTAGGGAGACAAGGCTGGTGGCTTAAATTTGCTCCATTATCGATACATGGAGATA
1 CACTACAACTTCAAGGAGATAAGACTAGTGGCTTAAATCTGCTCCATTGTCGATACATGGAGATA
* * *
31416771 AGATTCACCGTTTTTGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTTCAGTCTG
66 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTTCAGTCTG
* * *
31416836 CTCCACTGCAACCTCAGGGAGATAGGACTTGTATATTGAGTCTGCTC
131 CTCCACTGCAACCTCAGGGAGATAAGACTTGTATATTGAGCCTACTC
** * *
31416883 CACTACTGCTTCAAGGAGATAAGACTAGTGGTTTAAATCTGCTCCATTGCCGATACATGGAGATA
1 CACTACAACTTCAAGGAGATAAGACTAGTGGCTTAAATCTGCTCCATTGTCGATACATGGAGATA
* * * * * *
31416948 AGATCCGTCGTCTTCGATCTGTTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTTAGTCTG
66 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTTCAGTCTG
*
31417013 CTCCACTGCAATCTCAGGGAGATAAGACTTGTATATTGAGCCTACTC
131 CTCCACTGCAACCTCAGGGAGATAAGACTTGTATATTGAGCCTACTC
* * *
31417060 CAC-AGCAACTTCAAGGAGATAGGGCTAGTGACTTAAATCTGCTCCATTGTCGATACATGGAGAT
1 CACTA-CAACTTCAAGGAGATAAGACTAGTGGCTTAAATCTGCTCCATTGTCGATACATGGAGAT
** * * * *
31417124 AAGATTTTCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAATATCTGTAATTTTTAGTCT
65 AAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTTCAGTCT
*
31417189 GCTCCACTGCAACCTCAGGGAGATAAGACTTATATATTGAGCCTACTC
130 GCTCCACTGCAACCTCAGGGAGATAAGACTTGTATATTGAGCCTACTC
* * *
31417237 CACTGCAACTTCAAGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATA
1 CACTACAACTTCAAGGAGATAAGACTAGTGGCTTAAATCTGCTCCATTGTCGATACATGGAGATA
* *
31417302 AGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAGTCTG
66 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTTCAGTCTG
* * * * * * * * *
31417367 CTTCC-TTACTACCTCAGGAAGATAAGACTTGTATCTTCAACTTGCTC
131 C-TCCACTGCAACCTCAGGGAGATAAGACTTGTATATTGAGCCTACTC
* * * * * * * *
31417414 TC-TTGCTACCTC-AGAGAGATAAGACTAGTTGCTAAAATCTACTTCATTGTCGATACATGGAGA
1 -CACTACAACTTCAAG-GAGATAAGACTAGTGGCTTAAATCTGCTCCATTGTCGATACATGGAGA
***
31417477 TAAGATTTTTCGTCTTCGATCTGCTCCACTACTGCTT-AGGAAGATAAGATCT
64 TAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAAGG-AGATAAGATCT
31417529 ACGAATTCAC
Statistics
Matches: 563, Mismatches: 77, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
176 6 0.01
177 553 0.98
178 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (177 bp):
CACTACAACTTCAAGGAGATAAGACTAGTGGCTTAAATCTGCTCCATTGTCGATACATGGAGATA
AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTTCAGTCTG
CTCCACTGCAACCTCAGGGAGATAAGACTTGTATATTGAGCCTACTC
Found at i:31417657 original size:24 final size:23
Alignment explanation
Indices: 31417609--31417657 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
31417599 GTTTATGCCC
*
31417609 AAATGATTAGGATGCTATAATCA
1 AAATGATTAGGATGCTATAACCA
*
31417632 AAATGAATTA-GATGCTCCTAACCA
1 AAATG-ATTAGGATGCT-ATAACCA
31417656 AA
1 AA
31417658 TGCGCTATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (23 bp):
AAATGATTAGGATGCTATAACCA
Found at i:31420206 original size:19 final size:18
Alignment explanation
Indices: 31420184--31420238 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
31420174 GTCATGAATG
31420184 AAGAATAAAAGAATATTCA
1 AAGAATAAAAGAATATT-A
* *
31420203 AAGAACAAAAGAACATATA
1 AAGAATAAAAGAATAT-TA
*
31420222 AAGAATGAAAGAATATT
1 AAGAATAAAAGAATATT
31420239 TTCTCAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 1 0.03
19 28 0.93
20 1 0.03
ACGTcount: A:0.64, C:0.05, G:0.13, T:0.18
Consensus pattern (18 bp):
AAGAATAAAAGAATATTA
Found at i:31424768 original size:17 final size:18
Alignment explanation
Indices: 31424748--31424781 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31424738 ATAATAAATC
31424748 AATTA-AAAAAATAAAAG
1 AATTACAAAAAATAAAAG
*
31424765 AATTACAAAGAATAAAA
1 AATTACAAAAAATAAAA
31424782 ACGTAAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.18
Consensus pattern (18 bp):
AATTACAAAAAATAAAAG
Found at i:31430615 original size:25 final size:26
Alignment explanation
Indices: 31430583--31430637 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
31430573 TTATTAAATT
*
31430583 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
31430608 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
31430633 A-ATAT
1 ATATAT
31430638 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:31430862 original size:45 final size:44
Alignment explanation
Indices: 31430775--31430869 Score: 131
Period size: 45 Copynumber: 2.1 Consensus size: 44
31430765 TTACACCTCT
*
31430775 ATTACATTCAACCAAATACAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAATACAGTTTTACTATTACACCTCTATTCC
*
31430819 ATTACATTCAACC-AA-ACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAATACAG-T--TTTACTATTACACCTCTATTCC
31430864 ATTACA
1 ATTACA
31430870 CCTCTAATCC
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
42 4 0.09
43 3 0.07
44 13 0.28
45 26 0.57
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (44 bp):
ATTACATTCAACCAAATACAGTTTTACTATTACACCTCTATTCC
Found at i:31430869 original size:16 final size:16
Alignment explanation
Indices: 31430850--31430917 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
31430840 GATTTGCTAT
* *
31430850 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
31430866 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
31430882 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
31430898 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
31430914 TACA
1 TACA
31430918 GTGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:31431205 original size:22 final size:23
Alignment explanation
Indices: 31431175--31431222 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
31431165 CTATTTATTA
*
31431175 TTTTGAAT-ATTTATTTTTTGTT
1 TTTTGAATAATTTATTCTTTGTT
*
31431197 TTTTTAATAATTTATTCTTTGTT
1 TTTTGAATAATTTATTCTTTGTT
31431220 TTT
1 TTT
31431223 AAATTTCTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.73
Consensus pattern (23 bp):
TTTTGAATAATTTATTCTTTGTT
Found at i:31435132 original size:34 final size:35
Alignment explanation
Indices: 31435052--31435138 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 35
31435042 TACAGTGTAC
* * *
31435052 TCTGGTGTGTTGGTTGATCTGGCTCTTACGAGCAT
1 TCTGGTGTGCTGGTTGGTCTGGCTCTTACAAGCAT
*
31435087 TCTGGTATGCTGGTTGGTCTGGCTCATT-CAAGCA-
1 TCTGGTGTGCTGGTTGGTCTGGCTC-TTACAAGCAT
*
31435121 TCTGGTGTGCTGGATGGT
1 TCTGGTGTGCTGGTTGGT
31435139 TAACCGTGTC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
34 16 0.36
35 27 0.60
36 2 0.04
ACGTcount: A:0.11, C:0.17, G:0.33, T:0.38
Consensus pattern (35 bp):
TCTGGTGTGCTGGTTGGTCTGGCTCTTACAAGCAT
Found at i:31444650 original size:11 final size:11
Alignment explanation
Indices: 31444616--31444655 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
31444606 ATACTTAAAA
31444616 TAAATAATAAT
1 TAAATAATAAT
*
31444627 T-AAT--TACT
1 TAAATAATAAT
31444635 TAAATAATAAT
1 TAAATAATAAT
31444646 TAAATAATAA
1 TAAATAATAA
31444656 ATTTTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
8 4 0.17
9 3 0.12
10 3 0.12
11 14 0.58
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (11 bp):
TAAATAATAAT
Found at i:31452059 original size:23 final size:24
Alignment explanation
Indices: 31452008--31452056 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
31451998 TTTGAACAAG
* *
31452008 TTTATCGTTAAAAATGTTACTAAA
1 TTTATCATTAAAAATATTACTAAA
31452032 TTTATCATTAAAAA-ATTA-TAAA
1 TTTATCATTAAAAATATTACTAAA
31452054 TTT
1 TTT
31452057 TATAAAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
23 3 0.13
24 13 0.57
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (24 bp):
TTTATCATTAAAAATATTACTAAA
Found at i:31456265 original size:18 final size:19
Alignment explanation
Indices: 31456230--31456271 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
31456220 TTTCTGCAGT
31456230 GAAAAATAAAAGAAAAG-A
1 GAAAAATAAAAGAAAAGAA
**
31456248 GAAAAATAAAAGGGAAGAA
1 GAAAAATAAAAGAAAAGAA
31456267 GAAAA
1 GAAAA
31456272 GAAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (19 bp):
GAAAAATAAAAGAAAAGAA
Found at i:31461647 original size:20 final size:20
Alignment explanation
Indices: 31461635--31461672 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
31461625 AAATAAATTA
31461635 GAAAATTTTGAAAACAAGTT
1 GAAAATTTTGAAAACAAGTT
31461655 GAAAATTTTGAAAACAAG
1 GAAAATTTTGAAAACAAG
31461673 GGTCACACGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.05, G:0.16, T:0.26
Consensus pattern (20 bp):
GAAAATTTTGAAAACAAGTT
Found at i:31463768 original size:18 final size:18
Alignment explanation
Indices: 31463726--31463768 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
31463716 GCCCATTCCG
*
31463726 AAGTATATATATATACAT
1 AAGTATGTATATATACAT
31463744 ATA-TATGTATATATACAT
1 A-AGTATGTATATATACAT
31463762 AAGTATG
1 AAGTATG
31463769 CCCATTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (18 bp):
AAGTATGTATATATACAT
Found at i:31464253 original size:29 final size:28
Alignment explanation
Indices: 31464206--31464303 Score: 110
Period size: 27 Copynumber: 3.5 Consensus size: 28
31464196 CATGAGATTG
* * *
31464206 GCACTAAGTGTGTGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-AATTATAT-A
*
31464235 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
31464263 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
31464290 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
31464304 GACTTAATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
27 24 0.38
28 21 0.33
29 18 0.29
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:31464290 original size:27 final size:28
Alignment explanation
Indices: 31464234--31464303 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
31464224 TAAATTGTTC
31464234 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
31464262 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
31464289 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31464304 GACTTAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:31464317 original size:29 final size:27
Alignment explanation
Indices: 31464234--31464317 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
31464224 TAAATTGTTC
* *
31464234 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
31464262 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
31464289 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
31464318 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:31472030 original size:18 final size:18
Alignment explanation
Indices: 31471988--31472030 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
31471978 GCCCATTCTG
*
31471988 AAGTATATATATATACAT
1 AAGTATGTATATATACAT
31472006 ATA-TATGTATATATACAT
1 A-AGTATGTATATATACAT
31472024 AAGTATG
1 AAGTATG
31472031 CCCATTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (18 bp):
AAGTATGTATATATACAT
Found at i:31472552 original size:27 final size:28
Alignment explanation
Indices: 31472496--31472565 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
31472486 TAAATTGTTC
31472496 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
31472524 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
31472551 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31472566 GACTTAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:31472579 original size:29 final size:27
Alignment explanation
Indices: 31472496--31472579 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
31472486 TAAATTGTTC
* *
31472496 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
31472524 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
31472551 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
31472580 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:31487807 original size:26 final size:26
Alignment explanation
Indices: 31487773--31487825 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
31487763 AGAAGTTGAC
31487773 GACAATTTAATGTTCTGAAAAACATT
1 GACAATTTAATGTTCTGAAAAACATT
31487799 GACAATTTAATGTTCTGAAAAACATT
1 GACAATTTAATGTTCTGAAAAACATT
31487825 G
1 G
31487826 CCGGGTTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (26 bp):
GACAATTTAATGTTCTGAAAAACATT
Found at i:31501960 original size:27 final size:26
Alignment explanation
Indices: 31501929--31502023 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 26
31501919 AAGTACCCCA
*
31501929 ATTTACAGAATTATCATTCTACCCTCG
1 ATTTACAGAATTA-CATTTTACCCTCG
*
31501956 ATTTATAGAATTACTATTTTACCCTCG
1 ATTTACAGAATTAC-ATTTTACCCTCG
* *
31501983 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTA-CATTTTACCCTCG
*
31502010 ATTTACAAAATTAC
1 ATTTACAGAATTAC
31502024 TAAAATACCC
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.03
27 58 0.95
28 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (26 bp):
ATTTACAGAATTACATTTTACCCTCG
Found at i:31502032 original size:27 final size:27
Alignment explanation
Indices: 31501948--31502133 Score: 153
Period size: 27 Copynumber: 6.9 Consensus size: 27
31501938 ATTATCATTC
* ***
31501948 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* *****
31501975 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
*
31502002 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
31502029 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* *
31502056 TACCC-CTGATTTGTAAAATTACTGAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* *
31502083 TACCCTCGACTTGTA-AAAATTACCAAAG
1 TACCCTCGA-TT-TATAAAATTACTAAAA
*
31502111 TACCCTCGATTTATAGAATTACT
1 TACCCTCGATTTATAAAATTACT
31502134 GTTTTACCCG
Statistics
Matches: 134, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.02
27 108 0.81
28 22 0.16
29 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:31502141 original size:27 final size:27
Alignment explanation
Indices: 31502111--31502202 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
31502101 ATTACCAAAG
* *
31502111 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
31502138 TACCCGT-GATTTACAAAATTACTGTTT
1 TACCC-TCGATTTACAAAATTACTGTTT
* ** *
31502165 TACTCTTAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
31502192 TACCCTCGATT
1 TACCCTCGATT
31502203 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:31502264 original size:27 final size:27
Alignment explanation
Indices: 31502234--31502377 Score: 164
Period size: 27 Copynumber: 5.3 Consensus size: 27
31502224 TATAGGATAG
*
31502234 AATTACCAAAACACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
31502261 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
31502288 AATTACCAAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
**
31502315 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
* * *
31502342 AATTA-CAGAAATACCCTTGATTTGTAG
1 AATTACCA-AAATACCCCTAATTTGTAA
*
31502369 ATTTACCAA
1 AATTACCAA
31502378 CACACCATTG
Statistics
Matches: 96, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 92 0.96
28 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:31502273 original size:54 final size:53
Alignment explanation
Indices: 31502201--31502333 Score: 151
Period size: 54 Copynumber: 2.5 Consensus size: 53
31502191 TTACCCTCGA
* **
31502201 TTGTGAAATTACTGAAATACCCCTATAGGAT-AGAATTACCAAAACACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTATAGG-TGA-AATTACCAAAACACCCCTAAT
* * ** * *
31502255 TTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCAAAATACCCTTAAT
1 TTGTAAAATTACCAAAATACCCCT-ATAGGTGAAATTACCAAAACACCCCTAAT
31502309 TTGTAAAATTACCAAAATACCCCTA
1 TTGTAAAATTACCAAAATACCCCTA
31502334 ATTTACAAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
54 63 0.95
55 3 0.05
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTATAGGTGAAATTACCAAAACACCCCTAAT
Found at i:31502366 original size:81 final size:81
Alignment explanation
Indices: 31502171--31502366 Score: 202
Period size: 81 Copynumber: 2.4 Consensus size: 81
31502161 GTTTTACTCT
* *** * ** *
31502171 TAATTTACAAAATTACCGTTTTACCCTCGA-TTGTGAAATTACTGAAATACCCCTATAGGATAGA
1 TAATTTACAAAATTACAGAAATACCCTTGATTTGTGAAATTACCAAAATACCCCTATAGGATAAA
31502235 ATTACCAAAACACCCC
66 ATTACCAAAACACCCC
** * * **
31502251 TAATTTGTAAAATTACCA-AAATACCAC-TGGTTTGTGAAATTACCAAAATACCCTTAATTTG-T
1 TAATTTACAAAATTA-CAGAAATACC-CTTGATTTGTGAAATTACCAAAATACCCCT-ATAGGAT
*
31502313 AAAATTACCAAAATACCCC
63 AAAATTACCAAAACACCCC
31502332 TAATTTACAAAATTACAGAAATACCCTTGATTTGT
1 TAATTTACAAAATTACAGAAATACCCTTGATTTGT
31502367 AGATTTACCA
Statistics
Matches: 92, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
80 21 0.23
81 68 0.74
82 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
TAATTTACAAAATTACAGAAATACCCTTGATTTGTGAAATTACCAAAATACCCCTATAGGATAAA
ATTACCAAAACACCCC
Found at i:31503213 original size:20 final size:20
Alignment explanation
Indices: 31503188--31503274 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
31503178 GATATGATAT
*
31503188 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
31503208 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
31503228 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
31503248 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
31503268 ACATGAT
1 ACATGAT
31503275 GTATTCATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:31503352 original size:25 final size:25
Alignment explanation
Indices: 31503324--31503406 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 25
31503314 GAGGAAGTGC
31503324 AAAAGGGCTTATG-CCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
**
31503349 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATTG
*
31503374 AAAAGGGCATTGCCCCAG-TTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
31503397 AAAAGAGGCT
1 AAAAG-GGCT
31503407 AGGCCTCTAG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.16
25 37 0.74
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:31503598 original size:42 final size:42
Alignment explanation
Indices: 31503551--31503633 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
31503541 ATGGGTTTGT
* ** *
31503551 ATACATTCATTGGTATTTCATATGATATTGAAATGGGCTTAC
1 ATACATCCATTGACATTACATATGATATTGAAATGGGCTTAC
*
31503593 ATACATCCATTGACATTACATGTGATATTGAAATGGGCTTA
1 ATACATCCATTGACATTACATATGATATTGAAATGGGCTTA
31503634 TGGGCCATAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (42 bp):
ATACATCCATTGACATTACATATGATATTGAAATGGGCTTAC
Found at i:31503689 original size:31 final size:31
Alignment explanation
Indices: 31503654--31503763 Score: 202
Period size: 31 Copynumber: 3.5 Consensus size: 31
31503644 CGTTTACAGT
*
31503654 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
31503685 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
31503716 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
31503747 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCAGCCCAGT
31503764 AACCGTTAAA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 77 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:31506066 original size:27 final size:27
Alignment explanation
Indices: 31506044--31506288 Score: 158
Period size: 27 Copynumber: 9.1 Consensus size: 27
31506034 AGTACCCCCA
* *
31506044 ATTTACAGAATTACTGTTCTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
31506071 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
31506098 ATTTATAGAATTACCGTTTTACCTTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *****
31506125 ATTTACAAAATTACTAAAATACCC-CTG
1 ATTTACAGAATTACCGTTTTACCCTC-G
** * * ***
31506152 ATTTGTAAAATTACTGAAATACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* ****
31506179 ACTTGTA-AAAATTACCAAAGTACCCTCG
1 A-TT-TACAGAATTACCGTTTTACCCTCG
* *
31506207 ATTTATAG-ATTACTGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
** *
31506233 ATTTACAGAATTACTATTTTACCC-CTA
1 ATTTACAGAATTACCGTTTTACCCTC-G
31506260 ATTTACA-AATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
31506286 ATT
1 ATT
31506289 GTGAAATTAC
Statistics
Matches: 177, Mismatches: 33, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
26 41 0.23
27 113 0.64
28 22 0.12
29 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.38
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCG
Found at i:31506108 original size:54 final size:54
Alignment explanation
Indices: 31506018--31506288 Score: 228
Period size: 54 Copynumber: 5.0 Consensus size: 54
31506008 AATACTTTAG
* * ** * *
31506018 TTTACCAAATTACCAAAGTACCCCCAATTTACAGAATTACTGTTCTACCCTCGA
1 TTTACAAAATTACCAAATTACCCCTGATTTATAGAATTACTGTTTTACCCTCGA
* * ** * *
31506072 TTTATAGAATTACCATTTTA-CCCTCGATTTATAGAATTACCGTTTTACCTTCGA
1 TTTACAAAATTACCAAATTACCCCT-GATTTATAGAATTACTGTTTTACCCTCGA
* * * * ***
31506126 TTTACAAAATTACTAAAATACCCCTGATTTGTAAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCAAATTACCCCTGATTTATAGAATTACTGTTTTACCCTCGA
*
31506180 CTTGTA-AAAATTACCAAAGTA-CCCTCGATTTATAG-ATTACTGTTTTACCCTCGA
1 -TT-TACAAAATTACCAAATTACCCCT-GATTTATAGAATTACTGTTTTACCCTCGA
* * ** * * *
31506234 TTTACAGAATTACTATTTTACCCCTAATTTACA-AATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAATTACCCCTGATTTATAGAATTACTGTTTTACCCTCGA
31506287 TT
1 TT
31506289 GTGAAATTAC
Statistics
Matches: 169, Mismatches: 40, Indels: 17
0.75 0.18 0.08
Matches are distributed among these distances:
52 2 0.01
53 41 0.24
54 98 0.58
55 26 0.15
56 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.36
Consensus pattern (54 bp):
TTTACAAAATTACCAAATTACCCCTGATTTATAGAATTACTGTTTTACCCTCGA
Found at i:31506228 original size:26 final size:26
Alignment explanation
Indices: 31506199--31506288 Score: 110
Period size: 26 Copynumber: 3.4 Consensus size: 26
31506189 ATTACCAAAG
*
31506199 TACCCTCGATTTATAGATTACTGTTT
1 TACCCTCGATTTACAGATTACTGTTT
*
31506225 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAG-ATTACTGTTT
* * *
31506252 TACCC-CTAATTTACAAATTACCGTTT
1 TACCCTC-GATTTACAGATTACTGTTT
31506278 TACCCTCGATT
1 TACCCTCGATT
31506289 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
26 32 0.59
27 22 0.41
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (26 bp):
TACCCTCGATTTACAGATTACTGTTT
Found at i:31506256 original size:81 final size:80
Alignment explanation
Indices: 31506024--31506256 Score: 193
Period size: 81 Copynumber: 2.9 Consensus size: 80
31506014 TTAGTTTACC
* * * * *
31506024 AAATTACCAAAGTACCCCCAATTTACAGAATTACTGTTCTACCCTCGATTTATAGAATTACCATT
1 AAATTACCAAAGTACCCTCGATTTAAAG-ATTACTGTTATACCCTCGATTTATAGAATTACTATT
31506089 TTACCCTCGATTTATA
65 TTACCCTCGATTTATA
* **** * * *** * *
31506105 GAATTACCGTTTTACCTTCGATTTACAAAATTACTAAAATACCC-CTGATTTGTAAAATTACTGA
1 AAATTACCAAAGTACCCTCGATTTA-AAGATTACTGTTATACCCTC-GATTTATAGAATTACT-A
**
31506169 -AATACCCTCGACTTGTA-A
63 TTTTACCCTCGA-TT-TATA
* * *
31506187 AAATTACCAAAGTACCCTCGATTTATAGATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
1 AAATTACCAAAGTACCCTCGATTTAAAGATTACTGTTATACCCTCGATTTATAGAATTACTATTT
31506252 TACCC
66 TACCC
31506257 CTAATTTACA
Statistics
Matches: 109, Mismatches: 36, Indels: 14
0.69 0.23 0.09
Matches are distributed among these distances:
80 2 0.02
81 80 0.73
82 25 0.23
83 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.35
Consensus pattern (80 bp):
AAATTACCAAAGTACCCTCGATTTAAAGATTACTGTTATACCCTCGATTTATAGAATTACTATTT
TACCCTCGATTTATA
Found at i:31506350 original size:27 final size:27
Alignment explanation
Indices: 31506320--31506443 Score: 119
Period size: 27 Copynumber: 4.6 Consensus size: 27
31506310 TATAAGGTAG
*
31506320 AATTACCAAAACACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
31506347 AATTACTAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
31506374 AATTATCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
31506401 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
31506428 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
31506444 TTGATTTGTA
Statistics
Matches: 78, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
26 5 0.06
27 69 0.88
28 4 0.05
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:31506431 original size:54 final size:54
Alignment explanation
Indices: 31506340--31506453 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
31506330 ACACCCCTAG
* * ***
31506340 TTTGTAAAATTACTAAAATACCACTGGTTTGTGAAATTATCA-AAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTA-CAGAAATACCCTCAA
* **
31506394 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
31506448 TTTGTA
1 TTTGTA
31506454 GATTTTCCAA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 2 0.04
54 49 0.96
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
Found at i:31506465 original size:81 final size:81
Alignment explanation
Indices: 31506320--31506471 Score: 177
Period size: 81 Copynumber: 1.9 Consensus size: 81
31506310 TATAAGGTAG
** *
31506320 AATTACCAAAACACCCCTAGTTTGTAAAATTACTAAAATACCACTGGTTTGTGAAATTATCAAAA
1 AATTACCAAAACACCCCTAGTTTACAAAATTACTAAAATACCACTGATTTGTGAAATTATCAAAA
*
31506385 TACCCTCAATTTGTAA
66 CACCCTCAATTTGTAA
* * *
31506401 AATTACCAAAATACCCCT-GATTTACAAAATTAC-AGAAATACC-CTTGATTTGT-AGATTTTCC
1 AATTACCAAAACACCCCTAG-TTTACAAAATTACTA-AAATACCAC-TGATTTGTGAAATTAT-C
31506462 AAAACACCCT
62 AAAACACCCT
31506472 TGTAGGATGA
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
80 8 0.13
81 52 0.87
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (81 bp):
AATTACCAAAACACCCCTAGTTTACAAAATTACTAAAATACCACTGATTTGTGAAATTATCAAAA
CACCCTCAATTTGTAA
Found at i:31507300 original size:20 final size:20
Alignment explanation
Indices: 31507275--31507361 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
31507265 GATATGATAT
*
31507275 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
31507295 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
31507315 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
*
31507335 GCATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
31507355 ACATGAT
1 ACATGAT
31507362 GTATTCATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:31507489 original size:52 final size:51
Alignment explanation
Indices: 31507411--31507540 Score: 212
Period size: 52 Copynumber: 2.6 Consensus size: 51
31507401 GAGGAAGTGC
31507411 AAAAGGGCTTATGCCCCAGTTTATTGAAAAACGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAACGCTT-TGCCCCAGTTTACCG
**
31507463 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAACGCTTTGCCCCAGTTTACCG
31507514 AAAAGGGCTT-TGCCCCAG-TTATT-AAAA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAA
31507541 GAGGCTAGGC
Statistics
Matches: 76, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
48 4 0.05
49 5 0.07
50 8 0.11
51 25 0.33
52 34 0.45
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAACGCTTTGCCCCAGTTTACCG
Found at i:31507508 original size:25 final size:26
Alignment explanation
Indices: 31507411--31507546 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
31507401 GAGGAAGTGC
31507411 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
** **
31507437 AAAAACGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
31507463 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
31507489 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
31507514 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
31507537 AAAAGAGGCT
1 AAAAG-GGCT
31507547 AGGCCTCTAG
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 31 0.32
26 54 0.56
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:31507738 original size:42 final size:42
Alignment explanation
Indices: 31507679--31507772 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
31507669 TGGTCTCCCC
* ** *
31507679 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
* *
31507721 AAATGGGCTTGTATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
31507763 AAATGGGCTT
1 AAATGGGCTT
31507773 ATGGGCCATA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:31507829 original size:31 final size:31
Alignment explanation
Indices: 31507794--31507903 Score: 202
Period size: 31 Copynumber: 3.5 Consensus size: 31
31507784 CGTTTACAGT
*
31507794 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
31507825 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
31507856 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
31507887 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
31507904 AACCGTTAAA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 76 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:31509526 original size:23 final size:23
Alignment explanation
Indices: 31509500--31509550 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
31509490 CATTGGAGTA
*
31509500 TACTGTTTCAGCTCGTATA-AGCT
1 TACTGTTTCAGCT-GGATAGAGCT
31509523 TACTG-TTCAGCTGGATAGAGCT
1 TACTGTTTCAGCTGGATAGAGCT
31509545 TACTGT
1 TACTGT
31509551 GCATCAGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 4 0.16
22 16 0.64
23 5 0.20
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (23 bp):
TACTGTTTCAGCTGGATAGAGCT
Found at i:31517967 original size:27 final size:27
Alignment explanation
Indices: 31517914--31517968 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
31517904 ATTTTATCAA
* **
31517914 GATAGTAAATACGGGATAGTCTGCTGG
1 GATAGTAAACACGGGATAGTCCACTGG
* *
31517941 GATAGTAAACACGGGGTGGTCCACTGG
1 GATAGTAAACACGGGATAGTCCACTGG
31517968 G
1 G
31517969 TCAATAAACA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.27, C:0.15, G:0.36, T:0.22
Consensus pattern (27 bp):
GATAGTAAACACGGGATAGTCCACTGG
Found at i:31536957 original size:55 final size:55
Alignment explanation
Indices: 31536840--31536959 Score: 141
Period size: 55 Copynumber: 2.2 Consensus size: 55
31536830 TGTGATATGG
* * * * * *
31536840 CCGTGGTCGAGCTTGCCAAAACAACATGGGTGTGCGACACGCCCGTGTGGAAGAA
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCGTGCGACACGCCAGTGTCGAACAA
* * * * *
31536895 CCATGGTCGAGCCTGCTAAAACAGCACGGGCGTGCGACACGCCAGTGTCTAACAC
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCGTGCGACACGCCAGTGTCGAACAA
31536950 CCGTGGTCGA
1 CCGTGGTCGA
31536960 ACCTACCCAA
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.24, C:0.29, G:0.31, T:0.16
Consensus pattern (55 bp):
CCGTGGTCGAGCCTGCCAAAACAACACGGGCGTGCGACACGCCAGTGTCGAACAA
Found at i:31542892 original size:3 final size:3
Alignment explanation
Indices: 31542878--31542927 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
31542868 TAAGTAAATA
*
31542878 TAT TAA TAT TAT TA- TAT TAT TAT ATAT TAT TA- TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
31542921 TA- TAT TA
1 TAT TAT TA
31542928 AAATATAAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
2 8 0.20
3 29 0.73
4 3 0.08
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:31542894 original size:8 final size:8
Alignment explanation
Indices: 31542878--31542927 Score: 68
Period size: 8 Copynumber: 6.2 Consensus size: 8
31542868 TAAGTAAATA
31542878 TATTAATAT
1 TATT-ATAT
31542887 TATTATAT
1 TATTATAT
31542895 TATTATA-
1 TATTATAT
31542902 TATTAT-T
1 TATTATAT
31542909 ATATTATAT
1 -TATTATAT
31542918 TATTATAT
1 TATTATAT
31542926 TA
1 TA
31542928 AAATATAAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
7 6 0.16
8 27 0.71
9 5 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
TATTATAT
Found at i:31542924 original size:13 final size:13
Alignment explanation
Indices: 31542876--31542927 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
31542866 TTTAAGTAAA
*
31542876 TATATTAATATTAT
1 TATATTATTA-TAT
31542890 TATATTA-T-TA-
1 TATATTATTATAT
31542900 TATATTATTATAT
1 TATATTATTATAT
31542913 TATATTATTATAT
1 TATATTATTATAT
31542926 TA
1 TA
31542928 AAATATAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
10 7 0.20
11 3 0.09
12 2 0.06
13 16 0.46
14 7 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATATTATTATAT
Found at i:31542934 original size:18 final size:16
Alignment explanation
Indices: 31542883--31542933 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 16
31542873 AAATATATTA
31542883 ATATTATTATATTATTAT
1 ATATTATTATATTA--AT
31542901 ATATTATTATA-T--T
1 ATATTATTATATTAAT
*
31542914 ATATTATTATATTAAA
1 ATATTATTATATTAAT
31542930 ATAT
1 ATAT
31542934 AAAGTATGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
13 12 0.41
14 1 0.03
16 4 0.14
17 1 0.03
18 11 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATATTATTATATTAAT
Found at i:31544693 original size:19 final size:20
Alignment explanation
Indices: 31544656--31544693 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
31544646 AGAGGGATAA
*
31544656 TATGATTAAATTATGATGTC
1 TATGATTAAATAATGATGTC
*
31544676 TATG-TTAAATAATTATGT
1 TATGATTAAATAATGATGT
31544694 AAATGTTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (20 bp):
TATGATTAAATAATGATGTC
Found at i:31552258 original size:40 final size:39
Alignment explanation
Indices: 31552214--31552438 Score: 272
Period size: 40 Copynumber: 5.7 Consensus size: 39
31552204 GCCACTAGCT
*
31552214 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
31552254 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
31552293 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * * *
31552333 AAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
31552373 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
31552413 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
31552439 TATCATCCGA
Statistics
Matches: 163, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 40 0.25
40 123 0.75
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:31552312 original size:79 final size:78
Alignment explanation
Indices: 31552214--31552438 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
31552204 GCCACTAGCT
*
31552214 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
*
31552279 TATAATAACTCGCA
65 TATAATAACTCACA
* * * * *
31552293 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCAAAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
31552358 ATATAGTAGCTCACA
65 -TATAATAACTCACA
* * ** *
31552373 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCG
31552437 GT
64 GT
31552439 TATCATCCGA
Statistics
Matches: 124, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 63 0.51
80 61 0.49
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCACA
Found at i:31560283 original size:40 final size:39
Alignment explanation
Indices: 31560239--31560463 Score: 263
Period size: 40 Copynumber: 5.7 Consensus size: 39
31560229 GCCACTAGCT
*
31560239 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
31560279 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
31560318 CAAATGCCTCCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * * *
31560358 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTTGAA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
31560398 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
31560438 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
31560464 TATCATCCGA
Statistics
Matches: 162, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 39 0.24
40 123 0.76
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:31560337 original size:79 final size:78
Alignment explanation
Indices: 31560239--31560463 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 78
31560229 GCCACTAGCT
*
31560239 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
*
31560304 TATAATAACTCGCA
65 TATAATAACTCGAA
* * * * *
31560318 CAAATGCCTCCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* * *
31560383 ATATAGTAGCTTGAA
65 -TATAATAACTCGAA
* * ** *
31560398 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCG
31560462 GT
64 GT
31560464 TATCATCCGA
Statistics
Matches: 123, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 63 0.51
80 60 0.49
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGAA
Found at i:31570018 original size:16 final size:16
Alignment explanation
Indices: 31569997--31570032 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
31569987 AATGAAAGAG
*
31569997 AGAAATGAATTCATTT
1 AGAAATGAAATCATTT
31570013 AGAAATGAAATCATTT
1 AGAAATGAAATCATTT
31570029 AGAA
1 AGAA
31570033 TTCAACAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.06, G:0.14, T:0.31
Consensus pattern (16 bp):
AGAAATGAAATCATTT
Found at i:31577165 original size:21 final size:19
Alignment explanation
Indices: 31577130--31577226 Score: 59
Period size: 21 Copynumber: 4.8 Consensus size: 19
31577120 ATGTGCAAGT
* *
31577130 AGAGGCACCGTAGTGTGAATC
1 AGAGACACCGAAGTGT-AA-C
*
31577151 AGAGACACTGAAGTGTAAC
1 AGAGACACCGAAGTGTAAC
* *
31577170 AGAGGCACCGAAGTGCATAAG
1 AGAGACACCGAAGTG--TAAC
* *
31577191 AGAGGCACCAAAGTGCATAAC
1 AGAGACACCGAAGTG--TAAC
* *
31577212 AGAGGCACTGAAGTG
1 AGAGACACCGAAGTG
31577227 CAAATCCCGT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
19 14 0.22
20 2 0.03
21 48 0.75
ACGTcount: A:0.37, C:0.19, G:0.31, T:0.13
Consensus pattern (19 bp):
AGAGACACCGAAGTGTAAC
Found at i:31577227 original size:21 final size:21
Alignment explanation
Indices: 31577150--31577228 Score: 99
Period size: 21 Copynumber: 3.9 Consensus size: 21
31577140 TAGTGTGAAT
* *
31577150 CAGAGACACTGAAGTG--TAA
1 CAGAGGCACCGAAGTGCATAA
31577169 CAGAGGCACCGAAGTGCATAA
1 CAGAGGCACCGAAGTGCATAA
* *
31577190 GAGAGGCACCAAAGTGCATAA
1 CAGAGGCACCGAAGTGCATAA
*
31577211 CAGAGGCACTGAAGTGCA
1 CAGAGGCACCGAAGTGCA
31577229 AATCCCGTAC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
19 14 0.27
21 37 0.73
ACGTcount: A:0.39, C:0.20, G:0.29, T:0.11
Consensus pattern (21 bp):
CAGAGGCACCGAAGTGCATAA
Found at i:31577964 original size:26 final size:26
Alignment explanation
Indices: 31577927--31577984 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
31577917 TTATACAAAT
31577927 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
31577953 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
31577979 TGATAA
1 TGATAA
31577985 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:31584393 original size:39 final size:39
Alignment explanation
Indices: 31584339--31584450 Score: 170
Period size: 39 Copynumber: 2.9 Consensus size: 39
31584329 TTCAGTGATA
* *
31584339 TATATCCAGACTTAGGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
31584378 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* ** *
31584417 TATATCCGGGCTTAATGTCCGCAGGCTACGTGCT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCT
31584451 AGAAATATGT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:31584466 original size:39 final size:38
Alignment explanation
Indices: 31584355--31584482 Score: 112
Period size: 39 Copynumber: 3.3 Consensus size: 38
31584345 CAGACTTAGG
* * * * * **
31584355 GTCCACAGGCTATGTGCTGGAATTATATCCGGACTTAGG
1 GTCCGCAGGCTACGTGCTAGAAATATATCCGGGC-TAAA
* * * *
31584394 GTCCGCAGGCTATGTGCTGGAATTATATCCGGGCTTAAT
1 GTCCGCAGGCTACGTGCTAGAAATATATCCGGGC-TAAA
* *
31584433 GTCCGCAGGCTACGTGCTAGAAATATGTTCGGGCTAAA
1 GTCCGCAGGCTACGTGCTAGAAATATATCCGGGCTAAA
31584471 GTCCCGCAGGCT
1 GT-CCGCAGGCT
31584483 TCGAGCTGGT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 5 0.06
39 73 0.94
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (38 bp):
GTCCGCAGGCTACGTGCTAGAAATATATCCGGGCTAAA
Found at i:31586166 original size:28 final size:27
Alignment explanation
Indices: 31586127--31586186 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 27
31586117 ATATAAATTT
31586127 AAATTTAAAAAATCAA-AAAATTATATAA
1 AAATTTAAAAAA--AACAAAATTATATAA
*
31586155 AAATTTGAAAAAAATCAAAATTATATAA
1 AAATTT-AAAAAAAACAAAATTATATAA
31586183 AAAT
1 AAAT
31586187 CAAAATGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 1 0.03
28 22 0.76
29 6 0.21
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (27 bp):
AAATTTAAAAAAAACAAAATTATATAA
Found at i:31586198 original size:17 final size:17
Alignment explanation
Indices: 31586164--31586203 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 17
31586154 AAAATTTGAA
31586164 AAAAATCAAAATTATAT
1 AAAAATCAAAATTATAT
31586181 AAAAATCAAAATGTTATAT
1 AAAAATCAAAA--TTATAT
31586200 AAAA
1 AAAA
31586204 TTTTAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 11 0.52
19 10 0.48
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (17 bp):
AAAAATCAAAATTATAT
Found at i:31586423 original size:20 final size:20
Alignment explanation
Indices: 31586388--31586430 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
31586378 AATATTTTAA
*
31586388 TAAAATATTAAGAGTATTACT
1 TAAAATATTAAAAGTATTA-T
31586409 TAAAAT-TTAAAAGTATTAT
1 TAAAATATTAAAAGTATTAT
31586428 TAA
1 TAA
31586431 TGTTAAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 11 0.52
21 6 0.29
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (20 bp):
TAAAATATTAAAAGTATTAT
Found at i:31594635 original size:4 final size:4
Alignment explanation
Indices: 31594626--31594667 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
31594616 AAAAAAATCG
31594626 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
31594668 AGTATTGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:31595976 original size:25 final size:27
Alignment explanation
Indices: 31595925--31595985 Score: 90
Period size: 25 Copynumber: 2.3 Consensus size: 27
31595915 TGGAAATCAG
* *
31595925 ATTCATAATTATATGTATTTATGACAC
1 ATTCATAATAATATGTATTTATAACAC
31595952 ATTCATAA-AATAT-TATTTATAACAC
1 ATTCATAATAATATGTATTTATAACAC
31595977 ATTCATAAT
1 ATTCATAAT
31595986 GCTTAACTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 19 0.61
26 4 0.13
27 8 0.26
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (27 bp):
ATTCATAATAATATGTATTTATAACAC
Found at i:31601306 original size:11 final size:11
Alignment explanation
Indices: 31601280--31601338 Score: 64
Period size: 11 Copynumber: 5.1 Consensus size: 11
31601270 TGAATCCACC
31601280 AAAAAATTATA
1 AAAAAATTATA
*
31601291 TAAAAAATAATA
1 -AAAAAATTATA
31601303 AAAAAATTATA
1 AAAAAATTATA
31601314 AAAAGGAATTATA
1 AAAA--AATTATA
* *
31601327 TAAAAATAATA
1 AAAAAATTATA
31601338 A
1 A
31601339 TATACAATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
11 20 0.50
12 10 0.25
13 10 0.25
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.25
Consensus pattern (11 bp):
AAAAAATTATA
Found at i:31612502 original size:30 final size:29
Alignment explanation
Indices: 31612417--31612517 Score: 114
Period size: 30 Copynumber: 3.4 Consensus size: 29
31612407 TAATCACATT
31612417 AATATTAAATTAATAAAATATTATCTAGATA
1 AATATTAAATTAATAAAATA-TATC-AGATA
* ** * *
31612448 AATATT-TATTAAATTTAATATATCATATT
1 AATATTAAATT-AATAAAATATATCAGATA
31612477 AATATTAAATTAATAAAATACTATCAGATA
1 AATATTAAATTAATAAAATA-TATCAGATA
31612507 AATATTAAATT
1 AATATTAAATT
31612518 TAATTTAATG
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
29 16 0.28
30 28 0.49
31 13 0.23
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (29 bp):
AATATTAAATTAATAAAATATATCAGATA
Found at i:31612523 original size:60 final size:60
Alignment explanation
Indices: 31612409--31612540 Score: 185
Period size: 60 Copynumber: 2.2 Consensus size: 60
31612399 ATTAGAATTA
* * *
31612409 ATCACATTAATATTAAATTAATAAAATATTATCTAGATAAATATTTATTAAATTTAATAT
1 ATCATATTAATATTAAATTAATAAAATACTATCTAGATAAATATTAATTAAATTTAATAT
* *
31612469 ATCATATTAATATTAAATTAATAAAATACTATC-AGATAAATATTAAATTTAATTTAATGT
1 ATCATATTAATATTAAATTAATAAAATACTATCTAGATAAATATT-AATTAAATTTAATAT
* *
31612529 CTTATATTAATA
1 ATCATATTAATA
31612541 ACTAGAAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
59 11 0.17
60 53 0.83
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.43
Consensus pattern (60 bp):
ATCATATTAATATTAAATTAATAAAATACTATCTAGATAAATATTAATTAAATTTAATAT
Found at i:31613410 original size:31 final size:31
Alignment explanation
Indices: 31613375--31613434 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
31613365 TTTACGAAAG
31613375 TAATTCAACCAACTACTTTGTCCAATGACTT
1 TAATTCAACCAACTACTTTGTCCAATGACTT
* *
31613406 TAATTCAATCAACTGCTTTGTCCAATGAC
1 TAATTCAACCAACTACTTTGTCCAATGAC
31613435 CTCGCCATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (31 bp):
TAATTCAACCAACTACTTTGTCCAATGACTT
Found at i:31624440 original size:10 final size:11
Alignment explanation
Indices: 31624421--31624445 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
31624411 TGAAGTCTGC
31624421 AAAACAAAAAA
1 AAAACAAAAAA
31624432 AAAACAAAAAA
1 AAAACAAAAAA
31624443 AAA
1 AAA
31624446 GGGACTGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAACAAAAAA
Found at i:31625896 original size:12 final size:12
Alignment explanation
Indices: 31625879--31625912 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
31625869 AGAATATTTC
31625879 ATTTTTTAATTA
1 ATTTTTTAATTA
31625891 ATTTTTTTAATTA
1 A-TTTTTTAATTA
*
31625904 ATTCTTTAA
1 ATTTTTTAA
31625913 AAATATTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (12 bp):
ATTTTTTAATTA
Found at i:31625898 original size:13 final size:13
Alignment explanation
Indices: 31625880--31625906 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
31625870 GAATATTTCA
31625880 TTTTTTAATTAAT
1 TTTTTTAATTAAT
31625893 TTTTTTAATTAAT
1 TTTTTTAATTAAT
31625906 T
1 T
31625907 CTTTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTTAATTAAT
Found at i:31628253 original size:69 final size:69
Alignment explanation
Indices: 31628173--31628307 Score: 225
Period size: 69 Copynumber: 2.0 Consensus size: 69
31628163 TACATCAATC
*
31628173 GAAACTATTCAAGAATAACAGGAGCTTCTTCTCAAAATATGAATTTAACTATTCAAGCTCAATTA
1 GAAACTATTCAAGAATAACACGAGCTTCTTCTCAAAATATGAATTTAACTATTCAAGCTCAATTA
31628238 AATT
66 AATT
* * * *
31628242 GAAACTATTCAAGAATAACACGAGCTTTTTCTCAAAATATGAATTTAATTGTTCAAGCTTAATTA
1 GAAACTATTCAAGAATAACACGAGCTTCTTCTCAAAATATGAATTTAACTATTCAAGCTCAATTA
31628307 A
66 A
31628308 CAAATAACTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.33
Consensus pattern (69 bp):
GAAACTATTCAAGAATAACACGAGCTTCTTCTCAAAATATGAATTTAACTATTCAAGCTCAATTA
AATT
Found at i:31629242 original size:6 final size:6
Alignment explanation
Indices: 31629231--31629257 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
31629221 GAAGTCTAAG
31629231 AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
31629258 CAAATGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:31630893 original size:47 final size:47
Alignment explanation
Indices: 31630821--31630951 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
31630811 TACAATCGAT
* * *
31630821 AAGTACCTATACCATGGCCCATAGCCAAATCAATGTAACTTATCCCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCG
* * * *
31630868 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCT
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCG
* *
31630915 AAATACCTATACCATGGCCCGTAACCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
31630952 TTTTTTGCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.22
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCG
Found at i:31638069 original size:46 final size:46
Alignment explanation
Indices: 31638019--31638194 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
31638009 TGGTTGAGCA
31638019 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
31638065 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
31638110 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
31638158 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
31638195 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:31638175 original size:93 final size:93
Alignment explanation
Indices: 31638016--31638187 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
31638006 GGATGGTTGA
* *
31638016 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
31638081 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
31638109 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
31638174 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
31638188 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:31641082 original size:69 final size:68
Alignment explanation
Indices: 31640966--31641096 Score: 199
Period size: 69 Copynumber: 1.9 Consensus size: 68
31640956 ATATAAAATG
* *
31640966 ACTAGAGAATACTCTCATAGCTCACTTCTTCACTATTCTCATAAAAAAATTAATTTTGATCCCAC
1 ACTAGAAAATACTCTCATAGCTCACTTCTTCACTATTCTCAT-AAAAAATTAATTTTAATCCCAC
31641031 ATTA
65 ATTA
* * * *
31641035 ACTAGAAAATACTCTCATAGTTCACTTCTTCATTATTTTCATGAAAAATTAATTTTAATCCC
1 ACTAGAAAATACTCTCATAGCTCACTTCTTCACTATTCTCATAAAAAATTAATTTTAATCCC
31641097 TTATCGTTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
68 18 0.32
69 38 0.68
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.37
Consensus pattern (68 bp):
ACTAGAAAATACTCTCATAGCTCACTTCTTCACTATTCTCATAAAAAATTAATTTTAATCCCACA
TTA
Found at i:31641201 original size:6 final size:6
Alignment explanation
Indices: 31641190--31641228 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
31641180 ACTTTTATAA
*
31641190 AAATTT AAATTT AAATTT AAATTT AAATTT AAAGTT AAA
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAA
31641229 CAAATATTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (6 bp):
AAATTT
Found at i:31641616 original size:19 final size:18
Alignment explanation
Indices: 31641582--31641632 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
31641572 GTTTTGAGTT
31641582 TTTA-TTTATTTATATT-
1 TTTAGTTTATTTATATTC
31641598 TTTAAGTTTATTATATATTC
1 TTT-AGTTTATT-TATATTC
*
31641618 TTTAGTTTTTTTATA
1 TTTAGTTTATTTATA
31641633 ACTTTTTGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 3 0.10
17 1 0.03
18 10 0.33
19 13 0.43
20 3 0.10
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (18 bp):
TTTAGTTTATTTATATTC
Found at i:31643933 original size:15 final size:15
Alignment explanation
Indices: 31643913--31643987 Score: 111
Period size: 15 Copynumber: 5.2 Consensus size: 15
31643903 ATACTTAAGC
31643913 AGGGTTTGCACATAT
1 AGGGTTTGCACATAT
*
31643928 AGGGTTTGCTCATAT
1 AGGGTTTGCACATAT
*
31643943 -GGGTTTGCACATAC
1 AGGGTTTGCACATAT
31643957 AGGGTTTGCACATAT
1 AGGGTTTGCACATAT
31643972 --GGTTTGCACATAT
1 AGGGTTTGCACATAT
31643985 AGG
1 AGG
31643988 TTCACACCTA
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
13 13 0.25
14 12 0.23
15 28 0.53
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (15 bp):
AGGGTTTGCACATAT
Done.