Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 112 of 295
Found at i:33671095 original size:54 final size:54
Alignment explanation
Indices: 33671023--33671190 Score: 214
Period size: 54 Copynumber: 3.1 Consensus size: 54
33671013 GTGATGAAGT
*
33671023 CACCAGATACGGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* * * * *
33671077 TACCAGATCAGATAATTGTGGCATAGCCACCAGGACAAATATATGTGACAGAGC
1 CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* * * *
33671131 CACTAGATCAGATAATTGTGGCAGAGCCACTAGATCAGATA-ATTGTGGCATAGC
1 CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATA-TGTGGCAGAGC
33671185 CACCAG
1 CACCAG
33671191 GACGCTTCCT
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 5 0.05
54 91 0.95
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:33671151 original size:81 final size:80
Alignment explanation
Indices: 33671035--33671193 Score: 248
Period size: 81 Copynumber: 2.0 Consensus size: 80
33671025 CCAGATACGG
* *
33671035 ATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCTACCAGATCAGATAATTGTGGCA
1 ATATTGTGACAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCA
33671100 TAGCCACCAGGACAA
66 TAGCCACCAGGACAA
* * *
33671115 ATATATGTGACAGAGCCACTAGATCAGATA-ATTGTGGCAGAGCCACTAGATCAGATAATTGTGG
1 ATAT-TGTGACAGAGCCACCAGAACAGATATA-TGTGGCAGAGCCACCAGATCAGATAATTGTGG
33671179 CATAGCCACCAGGAC
64 CATAGCCACCAGGAC
33671194 GCTTCCTCCA
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
80 5 0.07
81 67 0.93
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (80 bp):
ATATTGTGACAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCA
TAGCCACCAGGACAA
Found at i:33679606 original size:25 final size:25
Alignment explanation
Indices: 33679572--33679619 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
33679562 GGGTTAGAAT
*
33679572 TAAATTTTAATCATTATATTATATC
1 TAAAATTTAATCATTATATTATATC
*
33679597 TAAAATTTAATCATTATCTTATA
1 TAAAATTTAATCATTATATTATA
33679620 ATGTCAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (25 bp):
TAAAATTTAATCATTATATTATATC
Found at i:33685538 original size:27 final size:27
Alignment explanation
Indices: 33685508--33685653 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
33685498 ATTATTGAAA
** * *
33685508 TACCCTCGATTTGTAGAATTACCTTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * *
33685535 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
33685562 CACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
33685589 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
33685616 TACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACCATTT
33685643 TACCCTCGATT
1 TACCCTCGATT
33685654 GTGAAATTAC
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 104 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:33685675 original size:27 final size:26
Alignment explanation
Indices: 33685645--33685807 Score: 114
Period size: 27 Copynumber: 6.1 Consensus size: 26
33685635 TACCATTTTA
* **
33685645 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
33685672 CCCTG-TAGGATAGAATTACCAAAATAC
1 CCCTGAT-TG-TAAAATTACCAAAATAC
*
33685699 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
33685726 CCCTAGTTTGTAAAATTACCGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * * * *
33685753 CACTGGTTTTGAAATTACCGAAATA-
1 CCCTGATTGTAAAATTACCAAAATAC
* *
33685778 CCCTCAATTTGTAAAATTACAAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
33685806 CC
1 CC
33685808 TTGACTTTCT
Statistics
Matches: 110, Mismatches: 19, Indels: 13
0.77 0.13 0.09
Matches are distributed among these distances:
25 4 0.04
26 20 0.18
27 81 0.74
28 4 0.04
29 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:33685726 original size:54 final size:54
Alignment explanation
Indices: 33685652--33685806 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 54
33685642 TTACCCTCGA
* * *
33685652 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** * *
33685706 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* ** *
33685760 TT-TGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACAAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATACC
33685807 CTTGACTTTC
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.05
53 35 0.41
54 43 0.51
55 3 0.04
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:33685774 original size:26 final size:27
Alignment explanation
Indices: 33685685--33685807 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
33685675 TGTAGGATAG
33685685 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
33685712 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
33685739 AATTACCGAAATACCACTGGTTT-TGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
33685765 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
*
33685792 AATTACAAAAATACCC
1 AATTACCAAAATACCC
33685808 TTGACTTTCT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
25 3 0.04
26 18 0.22
27 60 0.72
28 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:33685789 original size:53 final size:54
Alignment explanation
Indices: 33685685--33685806 Score: 158
Period size: 53 Copynumber: 2.3 Consensus size: 54
33685675 TGTAGGATAG
* *
33685685 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAA
* * * *
33685739 AATTACCGAAATACCACTGGTTT-TGAAATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCCT-AATTTGTAA
*
33685792 AATTACAAAAATACC
1 AATTACCAAAATACC
33685807 CTTGACTTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
52 4 0.07
53 35 0.59
54 20 0.34
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAA
Found at i:33685808 original size:27 final size:28
Alignment explanation
Indices: 33685685--33685891 Score: 153
Period size: 27 Copynumber: 7.6 Consensus size: 28
33685675 TGTAGGATAG
33685685 AATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCTCTAGTTTGTAA
33685712 AATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCTCTAGTTTGTAA
* * * *
33685739 AATTACCGAAATA-CCACTGGTTT-TGA
1 AATTACCAAAATACCCTCTAGTTTGTAA
* *
33685765 AATTACCGAAATACCCTC-AATTTGTAA
1 AATTACCAAAATACCCTCTAGTTTGTAA
* * *
33685792 AATTACAAAAATACCCT-TGACTTTCTAAA
1 AATTACCAAAATACCCTCT-AGTTTGT-AA
* * * **
33685821 AATTA-TAGAAATACCAT-TGGTTTACAA
1 AATTACCA-AAATACCCTCTAGTTTGTAA
* * *
33685848 AATTACTAAAATACCCT-TGGTTTGTAG
1 AATTACCAAAATACCCTCTAGTTTGTAA
* *
33685875 ATTTACCAAAACACCCT
1 AATTACCAAAATACCCT
33685892 TGTAGGATGA
Statistics
Matches: 148, Mismatches: 24, Indels: 16
0.79 0.13 0.09
Matches are distributed among these distances:
26 20 0.14
27 101 0.68
28 11 0.07
29 16 0.11
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (28 bp):
AATTACCAAAATACCCTCTAGTTTGTAA
Found at i:33685947 original size:27 final size:27
Alignment explanation
Indices: 33685915--33685984 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
33685905 GACTAAAATA
33685915 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
33685942 CCCCTATAGGGTAAAGTGACCGTAATA-
1 CCCCTATAGGGTAAAAAGACCGTAA-AG
* *
33685969 CCCTTATATGGTAAAA
1 CCCCTATAGGGTAAAA
33685985 TGATGAATAC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 3 0.08
27 32 0.89
28 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:33686837 original size:25 final size:24
Alignment explanation
Indices: 33686799--33686868 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
33686789 AGGAAGTGCT
*
33686799 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
* * *
33686823 GAAAAGAGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
33686848 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
33686869 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:33686881 original size:24 final size:24
Alignment explanation
Indices: 33686798--33686881 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
33686788 GAGGAAGTGC
* *
33686798 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* * *
33686823 GAAAAGAGCTTTGCCCTAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
33686847 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
33686871 TAAAAGAGGCT
1 TAAAAG-GGCT
33686882 AGGCCTCCAG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.21
25 34 0.71
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:33687139 original size:31 final size:31
Alignment explanation
Indices: 33687088--33687201 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
33687078 CGCTTACAGT
33687088 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
33687118 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
33687149 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
33687180 AAATGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
33687202 TCGAGACTGA
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
30 16 0.20
31 64 0.80
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:33690803 original size:39 final size:40
Alignment explanation
Indices: 33690646--33690870 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
33690636 GCTACTCGTT
* * *
33690646 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
33690686 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
33690726 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
33690766 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
33690805 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
33690846 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
33690871 CATCATTCGA
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 115 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:33690830 original size:119 final size:120
Alignment explanation
Indices: 33690648--33690870 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
33690638 TACTCGTTCA
* *
33690648 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
33690713 TTAATAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAATAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
33690768 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
** * *
33690830 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
33690871 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 64 0.73
120 20 0.23
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:33692063 original size:56 final size:56
Alignment explanation
Indices: 33691996--33692171 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
33691986 TATTAGTTTA
33691996 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
33692052 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
33692108 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
33692164 TTGCCCAT
1 TTGCCCAT
33692172 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:33692733 original size:27 final size:27
Alignment explanation
Indices: 33692703--33692846 Score: 191
Period size: 27 Copynumber: 5.3 Consensus size: 27
33692693 TACTGAAATG
** *
33692703 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * * *
33692730 CCCTCGATTTATAGAATTACTATTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
*
33692757 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
33692784 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
33692811 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
33692838 CCCTCGATT
1 CCCTCGATT
33692847 GTGAAATTAC
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 103 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:33692868 original size:27 final size:27
Alignment explanation
Indices: 33692845--33693001 Score: 149
Period size: 27 Copynumber: 5.8 Consensus size: 27
33692835 TTACCCTCGA
*
33692845 TTGTGAAATTACTGAAATACCCCTA-T
1 TTGTGAAATTACCGAAATACCCCTAGT
** *
33692871 AGGAT-AGAATTACCAAAATACCCCTAGT
1 TTG-TGA-AATTACCGAAATACCCCTAGT
* *
33692899 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGT
* * *
33692926 TTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGT
* *
33692953 TTGTGAAATTACCGAAATA-CCTTCAAT
1 TTGTGAAATTACCGAAATACCCCT-AGT
* *
33692980 TTGTAAAATTACCAAAATACCC
1 TTGTGAAATTACCGAAATACCC
33693002 TTGATTTACA
Statistics
Matches: 109, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.04
27 100 0.92
28 5 0.05
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.29
Consensus pattern (27 bp):
TTGTGAAATTACCGAAATACCCCTAGT
Found at i:33693008 original size:27 final size:27
Alignment explanation
Indices: 33692878--33693114 Score: 153
Period size: 27 Copynumber: 8.7 Consensus size: 27
33692868 TATAGGATAG
*
33692878 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
33692905 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* * *
33692932 AATTACCGAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTGATTTGTAA
* *
33692959 AATTACCGAAATA-CCTTCAATTTGTAA
1 AATTACCAAAATACCCTT-GATTTGTAA
**
33692986 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
33693013 ATTTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTTGA-TTTGT-AA
* * * * **
33693042 AAGTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTGATTTGTAA
** * *
33693069 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
* *
33693096 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
33693115 TAGGATGAAA
Statistics
Matches: 171, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.01
26 4 0.02
27 137 0.80
28 12 0.07
29 17 0.10
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:33693183 original size:27 final size:27
Alignment explanation
Indices: 33693132--33693209 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
33693122 AAATGACTAA
* *
33693132 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATA-CCCTTATAGGGTAAAATGACCGT
* *
33693159 AA-AGCCCTTGTAGGGTAAAGTGACCGT
1 AATA-CCCTTATAGGGTAAAATGACCGT
*
33693186 AATACCCTTATATGGTAAAATGAC
1 AATACCCTTATAGGGTAAAATGAC
33693210 GAATACGCCC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 7 0.17
27 33 0.80
28 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (27 bp):
AATACCCTTATAGGGTAAAATGACCGT
Found at i:33694092 original size:24 final size:24
Alignment explanation
Indices: 33694010--33694092 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
33694000 AGGAAGTGCT
* * * *
33694010 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCTAGCTTATC
33694034 GAAAAGGGCTTTGCCCTAGCTTATC
1 -AAAAGGGCTTTGCCCTAGCTTATC
*
33694059 AGAAAGGGCTTTGCCCTAG-TTATT
1 A-AAAGGGCTTTGCCCTAGCTTATC
33694083 AAAAGAGGCT
1 AAAAG-GGCT
33694093 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.20
25 37 0.73
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGCTTATC
Found at i:33694348 original size:31 final size:31
Alignment explanation
Indices: 33694299--33694381 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
33694289 CGCTTGCAGT
*
33694299 AAAGGCTTTGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
33694329 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
33694360 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
33694382 TCGAGACTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 15 0.29
31 36 0.71
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:33708725 original size:44 final size:44
Alignment explanation
Indices: 33708662--33708749 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
33708652 ACAGTTAGCT
33708662 TTGTATGATGACGGTTCAATTGTAGCTGAGTTGAAAGCGAGACC
1 TTGTATGATGACGGTTCAATTGTAGCTGAGTTGAAAGCGAGACC
* *
33708706 TTGTATGATGATGGTTCAATTGTAGTTGAGTTGAAAGCGAGACC
1 TTGTATGATGACGGTTCAATTGTAGCTGAGTTGAAAGCGAGACC
33708750 GTTATTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (44 bp):
TTGTATGATGACGGTTCAATTGTAGCTGAGTTGAAAGCGAGACC
Found at i:33709984 original size:47 final size:47
Alignment explanation
Indices: 33709911--33710004 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
33709901 CGATTGAGTT
* *
33709911 AGAGAAAATCCTTAATGTGTCGCATGTATCTATGTTGCATCGATATA
1 AGAGAAAATCCATAATGTGTCGCATGTATCGATGTTGCATCGATATA
**
33709958 AGAGAAAATCCATAATGTGTTTCATGTATCGATGTTGCATCGATATA
1 AGAGAAAATCCATAATGTGTCGCATGTATCGATGTTGCATCGATATA
33710005 GGTCGGATCC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (47 bp):
AGAGAAAATCCATAATGTGTCGCATGTATCGATGTTGCATCGATATA
Found at i:33732047 original size:21 final size:21
Alignment explanation
Indices: 33732021--33732061 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
33732011 ACCCTTAGTG
33732021 AACCCCCTTTGAGCCTACTAT
1 AACCCCCTTTGAGCCTACTAT
33732042 AACCCCCTTTGAGCCTACTA
1 AACCCCCTTTGAGCCTACTA
33732062 AACTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.39, G:0.10, T:0.27
Consensus pattern (21 bp):
AACCCCCTTTGAGCCTACTAT
Found at i:33734071 original size:13 final size:13
Alignment explanation
Indices: 33734053--33734081 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
33734043 TTTAGTTTAA
33734053 TTAGTTAATTAGT
1 TTAGTTAATTAGT
33734066 TTAGTTAATTAGT
1 TTAGTTAATTAGT
33734079 TTA
1 TTA
33734082 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:33738012 original size:208 final size:208
Alignment explanation
Indices: 33737643--33738065 Score: 720
Period size: 208 Copynumber: 2.0 Consensus size: 208
33737633 TTCAATTTCC
*
33737643 ATTCAAGGGTTTTGGGTTTTCTTTATGTTTTGTATTCATTATTCTTCTGAGATGTTTTCTTTTAT
1 ATTCAAGGGTTTTAGGTTTTCTTTATGTTTTGTATTCATTATTCTTCTGAGATGTTTTCTTTTAT
*
33737708 AATTATGAACTAAACCCCCTAAATACCTAAGGGGAATGAAACCTAAGATGAATCTTGTTACTATT
66 AATTATGAACTAAACCCCCTAAATACCTAAGGGGAATGAAACCTAAGACGAATCTTGTTACTATT
* *
33737773 ATTTAAATTGTATGATAGATATTTGACTTGTTCTTAATTATGTGTTCTTAATTCTTGTTTTAATA
131 ATCTAAATTGTATGATAAATATTTGACTTGTTCTTAATTATGTGTTCTTAATTCTTGTTTTAATA
* *
33737838 TTCTATGATATTG
196 TTCCAGGATATTG
33737851 ATTCAAGGGTTTTAGGTTTTCTTTATGTTTTGTATTCATTATTCTTCTGAGATGTTTTCTTTTAT
1 ATTCAAGGGTTTTAGGTTTTCTTTATGTTTTGTATTCATTATTCTTCTGAGATGTTTTCTTTTAT
* * * * *
33737916 AATTATGAACTAAACCTCCTATATACCTAAGGGGAATGAAACCTAAGGCGGATCTTGTTATTATT
66 AATTATGAACTAAACCCCCTAAATACCTAAGGGGAATGAAACCTAAGACGAATCTTGTTACTATT
* * *
33737981 ATCTGAATTGTATGATAAATATTTTACTTGTTCTTACTTATGTGTTCTTAATTCTTGTTTTAATA
131 ATCTAAATTGTATGATAAATATTTGACTTGTTCTTAATTATGTGTTCTTAATTCTTGTTTTAATA
33738046 TTCCAGGATATTG
196 TTCCAGGATATTG
33738059 ATTCAAG
1 ATTCAAG
33738066 TTAATGCTCT
Statistics
Matches: 201, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
208 201 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.47
Consensus pattern (208 bp):
ATTCAAGGGTTTTAGGTTTTCTTTATGTTTTGTATTCATTATTCTTCTGAGATGTTTTCTTTTAT
AATTATGAACTAAACCCCCTAAATACCTAAGGGGAATGAAACCTAAGACGAATCTTGTTACTATT
ATCTAAATTGTATGATAAATATTTGACTTGTTCTTAATTATGTGTTCTTAATTCTTGTTTTAATA
TTCCAGGATATTG
Found at i:33740270 original size:30 final size:30
Alignment explanation
Indices: 33740234--33740294 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
33740224 AGGATTCTGT
33740234 TTAGGTCATCATAGATTGATTGACCAAGCC
1 TTAGGTCATCATAGATTGATTGACCAAGCC
33740264 TTAGGTCATCATAGATTGATTGACCAAGCC
1 TTAGGTCATCATAGATTGATTGACCAAGCC
33740294 T
1 T
33740295 ACTCACTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (30 bp):
TTAGGTCATCATAGATTGATTGACCAAGCC
Found at i:33743011 original size:25 final size:25
Alignment explanation
Indices: 33742983--33743030 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
33742973 TTGGTTTTGG
33742983 TTTTGAGTTTTCGATTTAACCTACT
1 TTTTGAGTTTTCGATTTAACCTACT
** *
33743008 TTTTGCTTTTTCGATTTTACCTA
1 TTTTGAGTTTTCGATTTAACCTA
33743031 AAGGCATGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.10, T:0.56
Consensus pattern (25 bp):
TTTTGAGTTTTCGATTTAACCTACT
Found at i:33744109 original size:23 final size:23
Alignment explanation
Indices: 33744076--33744129 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
33744066 TATCACGTTG
*
33744076 TCATGACAAGAGGAAGCTCCTCG
1 TCATGACAAGAGGAAGCTCCTCA
*
33744099 TCGTGACAAGAGGAAGCTCCTCA
1 TCATGACAAGAGGAAGCTCCTCA
33744122 TCATGACA
1 TCATGACA
33744130 TCAAGTGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.31, C:0.26, G:0.24, T:0.19
Consensus pattern (23 bp):
TCATGACAAGAGGAAGCTCCTCA
Found at i:33744731 original size:45 final size:45
Alignment explanation
Indices: 33744667--33744760 Score: 170
Period size: 45 Copynumber: 2.1 Consensus size: 45
33744657 ACTACAGGGG
*
33744667 ACACATAGCCATGTCGCATGACCGTATGTCACACACGGTTGAGTC
1 ACACATAGCCATGTCGCATGACCGTATGTCACACACGGCTGAGTC
*
33744712 ACACATAGCCATGTCGCATGATCGTATGTCACACACGGCTGAGTC
1 ACACATAGCCATGTCGCATGACCGTATGTCACACACGGCTGAGTC
33744757 ACAC
1 ACAC
33744761 TCCCATGTCT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
ACACATAGCCATGTCGCATGACCGTATGTCACACACGGCTGAGTC
Found at i:33744895 original size:20 final size:20
Alignment explanation
Indices: 33744870--33744910 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
33744860 AAGGCATCAA
*
33744870 AAACATACTAAATCATTCAT
1 AAACATACTAAATCATGCAT
33744890 AAACATACTAAATCATGCAT
1 AAACATACTAAATCATGCAT
33744910 A
1 A
33744911 TAATGACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27
Consensus pattern (20 bp):
AAACATACTAAATCATGCAT
Found at i:33746557 original size:138 final size:138
Alignment explanation
Indices: 33746306--33746572 Score: 340
Period size: 138 Copynumber: 1.9 Consensus size: 138
33746296 CCATAAAATG
*
33746306 GGTCTGCTCACACAAGCTGACGGTCAGAATGTAAACTAAATAATGCTGCTCATACAAGCTAACGA
1 GGTCTGCTCACACAAGCTGACGGTCAGAATGTAAACTAAATAATGCTGCTCACACAAGCTAACGA
* * * * * *
33746371 GTATCTGTAACAAATGTTGGAACTCAGTCATCAGTAGGACATTCAGGACTAGCACCCGAAACATA
66 GTATCTGCAAAAAATGTCGGAACTCAGCCATCAGTAGAACATTCAGGACCAGCACCCGAAACATA
33746436 GTAACCTA
131 GTAACCTA
* * * * * * *
33746444 GGTCTGCTGACACAAGCTGA-GAGTCGGAATGTAAGCTACATGATGCTGCTCACACAAGCTTATG
1 GGTCTGCTCACACAAGCTGACG-GTCAGAATGTAAACTAAATAATGCTGCTCACACAAGCTAACG
* ** *
33746508 AGTAT-TCGCAAAAAATGTCGGACCTCAGCCATTGGTAGAACATTTAGGACCAGCACCCGAAACA
65 AGTATCT-GCAAAAAATGTCGGAACTCAGCCATCAGTAGAACATTCAGGACCAGCACCCGAAACA
33746572 T
129 T
33746573 GAAAACCGTA
Statistics
Matches: 109, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
137 2 0.02
138 107 0.98
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (138 bp):
GGTCTGCTCACACAAGCTGACGGTCAGAATGTAAACTAAATAATGCTGCTCACACAAGCTAACGA
GTATCTGCAAAAAATGTCGGAACTCAGCCATCAGTAGAACATTCAGGACCAGCACCCGAAACATA
GTAACCTA
Found at i:33758279 original size:46 final size:46
Alignment explanation
Indices: 33758160--33758332 Score: 271
Period size: 46 Copynumber: 3.8 Consensus size: 46
33758150 GCCTTCTGAA
*
33758160 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGTAACATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
33758206 ATGAAATG--TAAGACCATGGTTGAAAGATACCATGGCATCATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
33758250 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATTGCAACATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
33758296 A-GAAAATGAATAAGACCATGGTTGAAAGATACCATGG
1 ATG-AAATGTATAAGACCATGGTTGAAAGATACCATGG
33758333 TTTAAAGATA
Statistics
Matches: 117, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
44 42 0.36
45 1 0.01
46 74 0.63
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (46 bp):
ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:33758329 original size:16 final size:16
Alignment explanation
Indices: 33758310--33758348 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
33758300 AATGAATAAG
33758310 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
*
33758326 ACCATGGTTTAAAGAT
1 ACCATGGTTGAAAGAT
33758342 ACCATGG
1 ACCATGG
33758349 CAACATGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (16 bp):
ACCATGGTTGAAAGAT
Found at i:33758330 original size:62 final size:62
Alignment explanation
Indices: 33758264--33758394 Score: 201
Period size: 62 Copynumber: 2.1 Consensus size: 62
33758254 AATGTGTAAG
* * *
33758264 ACCATGGTTGAAAGATACCATTGCAACATGATA-GAAAATGAATAAGACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATGAATAAGACCACGATTGAAAGAT
*
33758326 ACCATGGTTTAAAGATACCATGGCAACATGATATGAAATGAATAAGACCACGATTGAAAGAT
1 ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCACGATTGAAAGAT
*
33758388 GCCATGG
1 ACCATGG
33758395 CAAAGCGACA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
62 62 0.98
63 1 0.02
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.22
Consensus pattern (62 bp):
ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCACGATTGAAAGAT
Found at i:33758356 original size:108 final size:108
Alignment explanation
Indices: 33758218--33758440 Score: 306
Period size: 108 Copynumber: 2.1 Consensus size: 108
33758208 GAAATGTAAG
* ** * *
33758218 ACCATGGTTGAAAGATACCATGGCATCATGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCACGATTGAAAGATACC
* * * *
33758283 ATTGCAACA-TGATA-GAAAATGAATAAGACCATGGTTGAAAGAT
66 ATGGCAA-AGCGACATG-AAATGAACAAGACCATGGTTGAAAGAT
* *
33758326 ACCATGGTTTAAAGATACCATGGCAACATGATATGAAATGAATAAGACCACGATTGAAAGATGCC
1 ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCACGATTGAAAGATACC
33758391 ATGGCAAAGCGACATGAAATGAACAAGACCATGGTTGAAAGAT
66 ATGGCAAAGCGACATGAAATGAACAAGACCATGGTTGAAAGAT
*
33758434 ATCATGG
1 ACCATGG
33758441 CAACATGACA
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
107 1 0.01
108 99 0.98
109 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.22
Consensus pattern (108 bp):
ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCACGATTGAAAGATACC
ATGGCAAAGCGACATGAAATGAACAAGACCATGGTTGAAAGAT
Found at i:33758454 original size:154 final size:152
Alignment explanation
Indices: 33758174--33758478 Score: 432
Period size: 154 Copynumber: 2.0 Consensus size: 152
33758164 AATGTATAAG
* * *
33758174 ACCATGGTTGAAAGATACCATGGTAACATGATATGAAATGTAAGACCATGGTTGAAAGATACCAT
1 ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTAAGACCACGATTGAAAGATACCAT
* * * *** * *
33758239 GGCATCATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATTGCAACATGATAGAAAATG
66 GGCATAACGACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATG
*
33758304 AATAAGACCATGGTTGAAAGAT
131 AATAAGACCATAGTTGAAAGAT
* *
33758326 ACCATGGTTTAAAGATACCATGGCAACATGATATGAAATGAATAAGACCACGATTGAAAGATGCC
1 ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATG--TAAGACCACGATTGAAAGATACC
*
33758391 ATGGCA-AAGCGACATGAAATGAACAAGACCATGGTTGAAAGATATCATGGCAACATGACAGAAA
64 ATGGCATAA-CGACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAA
*
33758455 ATGAGTAAGACCATAGTTGAAAGA
128 ATGAATAAGACCATAGTTGAAAGA
33758479 CACTATGGCA
Statistics
Matches: 134, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
152 38 0.28
153 1 0.01
154 95 0.71
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.22
Consensus pattern (152 bp):
ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTAAGACCACGATTGAAAGATACCAT
GGCATAACGACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATG
AATAAGACCATAGTTGAAAGAT
Found at i:33758457 original size:46 final size:46
Alignment explanation
Indices: 33758326--33758493 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 46
33758316 GTTGAAAGAT
* *
33758326 ACCATGGTTTAAAGATACCATGGCAACATGATATGAAATGAATAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAG
* * * * *
33758372 ACCACGATTGAAAGATGCCATGGCAA-AGCGACATGAAATGAACAAG
1 ACCATGGTTGAAAGATACCATGGCAACA-TGACATGAAATGAATAAG
* *
33758418 ACCATGGTTGAAAGATATCATGGCAACATGACA-GAAAATGAGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAATAAG
* * * *
33758464 ACCATAGTTGAAAGACACTATGGCATCATG
1 ACCATGGTTGAAAGATACCATGGCAACATG
33758494 TCAAAGATAA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
45 2 0.02
46 97 0.97
47 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (46 bp):
ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAG
Found at i:33765664 original size:27 final size:27
Alignment explanation
Indices: 33765625--33765802 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33765615 ATATTGAGTC
* * * *
33765625 CGCACACTCAGTGCTAGATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
33765652 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33765679 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
33765707 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
33765734 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
33765761 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33765788 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33765803 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:33765764 original size:82 final size:81
Alignment explanation
Indices: 33765646--33765801 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33765636 TGCTAGATAA
* *
33765646 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
33765711 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
33765728 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
33765792 CACTTAGTGC
65 CACTTAGTGC
33765802 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33773772 original size:27 final size:27
Alignment explanation
Indices: 33773733--33773910 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33773723 ATATTGAGTC
* * * *
33773733 CGCACACTCAGTGCTAGATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
33773760 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33773787 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
33773815 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
33773842 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
33773869 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33773896 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33773911 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:33773872 original size:82 final size:81
Alignment explanation
Indices: 33773754--33773909 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33773744 TGCTAGATAA
* *
33773754 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
33773819 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
33773836 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
33773900 CACTTAGTGC
65 CACTTAGTGC
33773910 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33777890 original size:16 final size:16
Alignment explanation
Indices: 33777869--33777939 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
33777859 GTTTGGTTCA
*
33777869 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
33777885 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
33777901 TTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
33777917 TTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
33777933 CTGTAAT
1 CTGTAAT
33777940 CAGTAATTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.32
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:33777983 original size:46 final size:44
Alignment explanation
Indices: 33777921--33778012 Score: 121
Period size: 44 Copynumber: 2.0 Consensus size: 44
33777911 ATAGAGTTGT
*
33777921 AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAAAGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCAACTGTTTGGTTGAAAGG
*** *
33777967 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAAAGG
33778011 AA
1 AA
33778013 CAATATTGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
44 20 0.49
45 3 0.07
46 18 0.44
ACGTcount: A:0.34, C:0.07, G:0.26, T:0.34
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAAAGG
Found at i:33778190 original size:26 final size:25
Alignment explanation
Indices: 33778161--33778243 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 25
33778151 AATAAATAAT
*
33778161 TTAATCATATTTTAACATAATTATTA
1 TTAAT-ATATTTTAATATAATTATTA
* * * *
33778187 TTAAATATAATTTAATAAAAATATAA
1 TT-AATATATTTTAATATAATTATTA
*
33778213 TTTAATAACATTCTTAATATAATTATTA
1 -TTAAT-ATATT-TTAATATAATTATTA
33778241 TTA
1 TTA
33778244 TATGAATTAA
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
26 20 0.47
27 11 0.26
28 12 0.28
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (25 bp):
TTAATATATTTTAATATAATTATTA
Found at i:33778201 original size:58 final size:53
Alignment explanation
Indices: 33778126--33778243 Score: 139
Period size: 54 Copynumber: 2.1 Consensus size: 53
33778116 AATAAGATTG
* *
33778126 TTATTGAAAATAATTTAATGAAAATAATAAATAATTTAATCATATT-TTAACATAATTA
1 TTATT-AAAATAATTTAAT--AAA-AAT--ATAATTTAATAACATTCTTAACATAATTA
*
33778184 TTATTAAATATAATTTAATAAAAATATAATTTAATAACATTCTTAATATAATTA
1 TTATTAAA-ATAATTTAATAAAAATATAATTTAATAACATTCTTAACATAATTA
33778238 TTATTA
1 TTATTA
33778244 TATGAATTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
53 14 0.25
54 17 0.31
55 3 0.05
56 3 0.05
57 3 0.05
58 15 0.27
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (53 bp):
TTATTAAAATAATTTAATAAAAATATAATTTAATAACATTCTTAACATAATTA
Found at i:33778208 original size:16 final size:16
Alignment explanation
Indices: 33778189--33778220 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
33778179 AATTATTATT
33778189 AAATATAATTTAATAA
1 AAATATAATTTAATAA
33778205 AAATATAATTTAATAA
1 AAATATAATTTAATAA
33778221 CATTCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATATAATTTAATAA
Found at i:33783438 original size:40 final size:40
Alignment explanation
Indices: 33783255--33783424 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
33783245 TCCTCGTTCA
* * * * *
33783255 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
33783294 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
33783334 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
33783374 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
33783414 AAGGCCTTCGG
1 AATGCCTTCGG
33783425 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:33785101 original size:26 final size:26
Alignment explanation
Indices: 33785029--33785129 Score: 86
Period size: 26 Copynumber: 4.0 Consensus size: 26
33785019 TTATAATAGG
*
33785029 AATATTACTAAATATAATTTAATAAT
1 AATATTATTAAATATAATTTAATAAT
* * * *
33785055 AA-ATAATTTAATCATACTTTAAT-TT
1 AATATTATTAAAT-ATAATTTAATAAT
33785080 AAGTATTATTAAATATAATTTAATAA-
1 AA-TATTATTAAATATAATTTAATAAT
*
33785106 AA-A-TAATAACATATAATTTAATAA
1 AATATTATTAA-ATATAATTTAATAA
33785130 CATTCTTAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
23 5 0.08
24 15 0.25
25 10 0.17
26 22 0.37
27 8 0.13
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (26 bp):
AATATTATTAAATATAATTTAATAAT
Found at i:33785171 original size:63 final size:61
Alignment explanation
Indices: 33785048--33785185 Score: 172
Period size: 63 Copynumber: 2.2 Consensus size: 61
33785038 AAATATAATT
* *
33785048 TAATAATAAATAATTTAATCATACTTTAATTTAAGTATTATTAAATATAATTTAATAAAAA
1 TAATAATATATAATTTAATCATACTTTAATATAAGTATTATTAAATATAATTTAATAAAAA
* * *
33785109 TAATAACATATAATTTAATAACATTC-TTAATATAATTATTATTAAAATATGAA-TTAATAAAAA
1 TAATAATATATAATTTAAT--CATACTTTAATATAAGTATTATT-AAATAT-AATTTAATAAAAA
*
33785172 TCATAATATATAAT
1 TAATAATATATAAT
33785186 ATTAGAAAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
61 17 0.26
62 15 0.23
63 32 0.48
64 2 0.03
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (61 bp):
TAATAATATATAATTTAATCATACTTTAATATAAGTATTATTAAATATAATTTAATAAAAA
Found at i:33785299 original size:15 final size:16
Alignment explanation
Indices: 33785279--33785313 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
33785269 TAATTTAATT
33785279 ATCTTC-TATAAATGA
1 ATCTTCTTATAAATGA
*
33785294 ATCTTCTTATAAATTA
1 ATCTTCTTATAAATGA
33785310 ATCT
1 ATCT
33785314 CAGTTTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.37, C:0.14, G:0.03, T:0.46
Consensus pattern (16 bp):
ATCTTCTTATAAATGA
Found at i:33785439 original size:12 final size:12
Alignment explanation
Indices: 33785422--33785447 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33785412 TCATTTGTTA
33785422 TTTATATAATTT
1 TTTATATAATTT
33785434 TTTATATAATTT
1 TTTATATAATTT
33785446 TT
1 TT
33785448 GTTTTGCCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTATATAATTT
Found at i:33785495 original size:19 final size:18
Alignment explanation
Indices: 33785468--33785510 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
33785458 TGTTATAATC
33785468 TAAAAATGATAAATTGTAT
1 TAAAAATGA-AAATTGTAT
* * *
33785487 TAAACATGAAATTTTTAT
1 TAAAAATGAAAATTGTAT
33785505 TAAAAA
1 TAAAAA
33785511 AAAGAAAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.37
Consensus pattern (18 bp):
TAAAAATGAAAATTGTAT
Found at i:33786201 original size:5 final size:5
Alignment explanation
Indices: 33786177--33786215 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
33786167 TGAACATTGA
*
33786177 AAACT AAA-T AACCAT AAACT AAACT AAACT AAACT AAAC
1 AAACT AAACT AAAC-T AAACT AAACT AAACT AAACT AAAC
33786216 AACTATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 3 0.10
5 23 0.77
6 4 0.13
ACGTcount: A:0.62, C:0.21, G:0.00, T:0.18
Consensus pattern (5 bp):
AAACT
Found at i:33786866 original size:12 final size:12
Alignment explanation
Indices: 33786849--33786875 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33786839 AGTCATAAGC
33786849 CCTTAATTGCAA
1 CCTTAATTGCAA
33786861 CCTTAATTGCAA
1 CCTTAATTGCAA
33786873 CCT
1 CCT
33786876 CAGTCATGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (12 bp):
CCTTAATTGCAA
Found at i:33813829 original size:12 final size:11
Alignment explanation
Indices: 33813806--33813846 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
33813796 TAACATACTG
33813806 AATTTTTAATT
1 AATTTTTAATT
33813817 AATTTTATAATT
1 AATTTT-TAATT
33813829 AATTTTGT--TT
1 AATTTT-TAATT
33813839 AATTTTTA
1 AATTTTTA
33813847 TTATTTTCGA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
9 1 0.04
10 8 0.30
11 6 0.22
12 12 0.44
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (11 bp):
AATTTTTAATT
Found at i:33824236 original size:19 final size:19
Alignment explanation
Indices: 33824212--33824249 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
33824202 TCATTGTTCA
33824212 TTAATGACACAATTCTTTT
1 TTAATGACACAATTCTTTT
*
33824231 TTAATGACACAATTGTTTT
1 TTAATGACACAATTCTTTT
33824250 CATTAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (19 bp):
TTAATGACACAATTCTTTT
Found at i:33825770 original size:43 final size:43
Alignment explanation
Indices: 33825717--33825799 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
33825707 TCATCGAATA
* * * *
33825717 AAATCAAAGTAGGTAAGTTGTCACACGTAGTGCATCATCAGGC
1 AAATCAAAGTAGGGAAATTGACACACATAGTGCATCATCAGGC
*
33825760 AAATCGAAGTAGGGAAATTGACACACATAGTGCATCATCA
1 AAATCAAAGTAGGGAAATTGACACACATAGTGCATCATCA
33825800 AATAAACGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.22
Consensus pattern (43 bp):
AAATCAAAGTAGGGAAATTGACACACATAGTGCATCATCAGGC
Found at i:33831007 original size:28 final size:28
Alignment explanation
Indices: 33830975--33831028 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
33830965 AAATAAAATC
33830975 AATATCTTTTTTCTTAAATGTATATATA
1 AATATCTTTTTTCTTAAATGTATATATA
33831003 AATATCTTTTTTCTTAAATGTATATA
1 AATATCTTTTTTCTTAAATGTATATA
33831029 CACATTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (28 bp):
AATATCTTTTTTCTTAAATGTATATATA
Found at i:33838203 original size:193 final size:193
Alignment explanation
Indices: 33837951--33838343 Score: 671
Period size: 193 Copynumber: 2.0 Consensus size: 193
33837941 TTGAAATTTT
*
33837951 AGTATTGACTTAAGAAGTATCCATTAAATCTATTAACTAAAATGATGTTACTTTTTACGAGAATT
1 AGTATTGACTTAAGAAGTATCCATTAAATCTATTAACTAAAATAATGTTACTTTTTACGAGAATT
* *
33838016 ATATAGAAATAACAAGCTGGCATGACATTACATATGTAATTACATGTTTGTTGCATAAGATTTTG
66 ATATAAAAATAACAAGCTGACATGACATTACATATGTAATTACATGTTTGTTGCATAAGATTTTG
* * *
33838081 GAAATAATAGGATTTAACTTAGGGAATCTAATTGCTATTATTTGATTAAAACTAAAAATTTAA
131 AAAATAATAGGATTTAACTTAAGGAATCTAATTGCTACTATTTGATTAAAACTAAAAATTTAA
* *
33838144 AGTATTGACTTAAGAAGTATTCGTTAAATCTATTAACTAAAATAATGTTACTTTTTACGAGAATT
1 AGTATTGACTTAAGAAGTATCCATTAAATCTATTAACTAAAATAATGTTACTTTTTACGAGAATT
* ** *
33838209 ATATAAAAATAGCAATTTGACATGACATTACATATGTAATTACATTTTTGTTGCATAAGATTTTG
66 ATATAAAAATAACAAGCTGACATGACATTACATATGTAATTACATGTTTGTTGCATAAGATTTTG
33838274 AAAATAATAGGATTTAACTTAAGGAATCTAATTGCTACTATTTGATTAAAACTAAAAATTTAA
131 AAAATAATAGGATTTAACTTAAGGAATCTAATTGCTACTATTTGATTAAAACTAAAAATTTAA
33838337 AGT-TTGA
1 AGTATTGA
33838344 AAAATTACAG
Statistics
Matches: 188, Mismatches: 12, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
192 4 0.02
193 184 0.98
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (193 bp):
AGTATTGACTTAAGAAGTATCCATTAAATCTATTAACTAAAATAATGTTACTTTTTACGAGAATT
ATATAAAAATAACAAGCTGACATGACATTACATATGTAATTACATGTTTGTTGCATAAGATTTTG
AAAATAATAGGATTTAACTTAAGGAATCTAATTGCTACTATTTGATTAAAACTAAAAATTTAA
Found at i:33841505 original size:37 final size:37
Alignment explanation
Indices: 33841276--33841501 Score: 172
Period size: 37 Copynumber: 6.1 Consensus size: 37
33841266 GCGCATGCAT
*
33841276 TTCA-TATAATCAGTAGATATCGCTTGTTTGAGCCCA
1 TTCAGTATAATCAGTAGATATCGCTCGTTTGAGCCCA
* * * *
33841312 TTCAGTATAATTAATGGATATCGCTCGTTTGAGCACCT
1 TTCAGTATAATCAGTAGATATCGCTCGTTTGAGC-CCA
* * * * * *
33841350 TTCAGTAGAATGAGTAGA-AGTTGCTCTTTTGAGCACG
1 TTCAGTATAATCAGTAGATA-TCGCTCGTTTGAGCCCA
* * * *
33841387 TTTAGTATATTCAATAGATATTC-CTTGTTTGAGCCCA
1 TTCAGTATAATCAGTAGATA-TCGCTCGTTTGAGCCCA
* * * * *
33841424 TTCAGTACAATTAGT-GTATATCACTCATTTGAGCACA
1 TTCAGTATAATCAGTAG-ATATCGCTCGTTTGAGCCCA
* * * *
33841461 TTTAATATAATCAGTAGACATTGCTCGTTTGAGCCCA
1 TTCAGTATAATCAGTAGATATCGCTCGTTTGAGCCCA
33841498 TTCA
1 TTCA
33841502 ATATTCCATA
Statistics
Matches: 141, Mismatches: 42, Indels: 13
0.72 0.21 0.07
Matches are distributed among these distances:
36 7 0.05
37 103 0.73
38 31 0.22
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (37 bp):
TTCAGTATAATCAGTAGATATCGCTCGTTTGAGCCCA
Found at i:33841925 original size:18 final size:18
Alignment explanation
Indices: 33841904--33841940 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
33841894 CCAACAGTAA
33841904 AATTAATTCATTTTATAC
1 AATTAATTCATTTTATAC
* *
33841922 AATTAATTCCTTTTTTAC
1 AATTAATTCATTTTATAC
33841940 A
1 A
33841941 TTTTTACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (18 bp):
AATTAATTCATTTTATAC
Found at i:33844543 original size:24 final size:24
Alignment explanation
Indices: 33844515--33844566 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
33844505 TTTCTAGCAG
* *
33844515 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
33844539 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
33844563 ATTT
1 ATTT
33844567 GATTTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.52
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:33857843 original size:23 final size:22
Alignment explanation
Indices: 33857817--33857864 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
33857807 TTCTTCTCTT
* *
33857817 TTCCTTCTATCTTCTCTATTTTG
1 TTCCTACTATCTCCTC-ATTTTG
*
33857840 TTCCTACTTTCTCCTCATTTTG
1 TTCCTACTATCTCCTCATTTTG
33857862 TTC
1 TTC
33857865 TTTCGATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.08, C:0.29, G:0.04, T:0.58
Consensus pattern (22 bp):
TTCCTACTATCTCCTCATTTTG
Found at i:33867041 original size:106 final size:106
Alignment explanation
Indices: 33866911--33867148 Score: 395
Period size: 106 Copynumber: 2.2 Consensus size: 106
33866901 TAACTTGGGT
* * *
33866911 CACACGGCCAAGCCACACGCTCGTGTGCTAGGCCGTGTGAGCATATTGACTTGCATCCTTAAGAA
1 CACACGGCTAAGACACACGCTCGTGTGCTAGGCCATGTGAGCATATTGACTTGCATCCTTAAGAA
*
33866976 GCTACAGGGGACACATAACCGTGTCACCTGGCCATATGTCA
66 GCTACAGGGGACACACAACCGTGTCACCTGGCCATATGTCA
*
33867017 CACACGGCTAAGACACACGCTCGTGTGCTAGGCTATGTGAGCATATTGACTTGCATCCTTAAGAA
1 CACACGGCTAAGACACACGCTCGTGTGCTAGGCCATGTGAGCATATTGACTTGCATCCTTAAGAA
* *
33867082 GCTATAGGGGACACACAACCGTGTCACCTGGCCATGTGTCA
66 GCTACAGGGGACACACAACCGTGTCACCTGGCCATATGTCA
* *
33867123 CACACTGCTGAGACACACGCTCGTGT
1 CACACGGCTAAGACACACGCTCGTGT
33867149 CTCTACCAGT
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
106 123 1.00
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (106 bp):
CACACGGCTAAGACACACGCTCGTGTGCTAGGCCATGTGAGCATATTGACTTGCATCCTTAAGAA
GCTACAGGGGACACACAACCGTGTCACCTGGCCATATGTCA
Found at i:33868336 original size:25 final size:25
Alignment explanation
Indices: 33868308--33868361 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
33868298 AGCTCTTCTT
*
33868308 AGCTGAATAACAGTAAGCTCATGCG
1 AGCTGAATAACAGTAAGCTCATACG
* * *
33868333 AGCTGAGTATCGGTAAGCTCATACG
1 AGCTGAATAACAGTAAGCTCATACG
33868358 AGCT
1 AGCT
33868362 AAAATTGGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (25 bp):
AGCTGAATAACAGTAAGCTCATACG
Found at i:33869358 original size:17 final size:18
Alignment explanation
Indices: 33869331--33869368 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
33869321 AGGGACCTCC
*
33869331 ATTTAAATACCTTTAGCT
1 ATTTAAATACCATTAGCT
33869349 ATTT-AATACCATTAGCT
1 ATTTAAATACCATTAGCT
33869366 ATT
1 ATT
33869369 AGAACTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.34, C:0.16, G:0.05, T:0.45
Consensus pattern (18 bp):
ATTTAAATACCATTAGCT
Found at i:33871814 original size:20 final size:20
Alignment explanation
Indices: 33871789--33871849 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 20
33871779 AATAAAAAAT
33871789 AAAATTATAAAAATTATTAG
1 AAAATTATAAAAATTATTAG
* * *
33871809 AAAATTCA-AAATATT-GTAA
1 AAAATT-ATAAAAATTATTAG
33871828 AAAATTAT-AAAATTATTAG
1 AAAATTATAAAAATTATTAG
33871847 AAA
1 AAA
33871850 TTGTAATTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
18 6 0.19
19 13 0.41
20 12 0.38
21 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAATTATAAAAATTATTAG
Found at i:33872456 original size:24 final size:25
Alignment explanation
Indices: 33872422--33872471 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
33872412 AATTTTTTAA
*
33872422 TAATTTGAATAATTATTTTTTATTT
1 TAATTTGAATAATTATTTTTAATTT
33872447 TAATTT-AATAATTATTTTTAATTT
1 TAATTTGAATAATTATTTTTAATTT
33872471 T
1 T
33872472 TATATTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (25 bp):
TAATTTGAATAATTATTTTTAATTT
Found at i:33874286 original size:46 final size:45
Alignment explanation
Indices: 33874233--33874449 Score: 174
Period size: 46 Copynumber: 4.7 Consensus size: 45
33874223 ATTGTGAACT
* *
33874233 AGTGTAAGACATGTCTGGGGCATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGAGCC
* * * *
33874279 AGTGTAAGACCATGT-TCAGGACATAGCATTGG-CAGTAAGATGAGAGCT
1 AGTGTAAGA-CATGTCT-GGGACAT-GCATCGGCCA--CAGATGAGAGCC
* * *
33874327 AGTGTAGGACATGTCTGGGACATGCATCAGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATG-AGAGCC
* * * *
33874373 AGTGTAAGACATGTCTGGGATATGCATCGGCTAC-GAGTTA-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGA-TGAGAGCC
*
33874417 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
33874450 ATCCTATCCC
Statistics
Matches: 137, Mismatches: 22, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 15 0.11
45 13 0.09
46 60 0.44
47 25 0.18
48 23 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGAGCC
Found at i:33881903 original size:46 final size:45
Alignment explanation
Indices: 33881850--33882016 Score: 165
Period size: 46 Copynumber: 3.6 Consensus size: 45
33881840 ATTGTGAGTT
* * *
33881850 AGTGTAAGACATGTCTGGGACATGCATCGGCAACATTACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCA-GATGAGAGCC
** * * *
33881896 AGTGTAAGACCATGTCCAGTACATGGCATCGGCAGTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-TCAGATGAGAGCC
* * *
33881944 AATGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATC-AGATG-AGAGCC
*
33881990 AGTGTAAGACATGTCTGGGATATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
33882017 TAGCTACGAG
Statistics
Matches: 98, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 49 0.50
47 23 0.23
48 24 0.24
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCAGATGAGAGCC
Found at i:33881941 original size:48 final size:46
Alignment explanation
Indices: 33881889--33882063 Score: 126
Period size: 46 Copynumber: 3.8 Consensus size: 46
33881879 GCAACATTAC
* * *
33881889 GAGAGCCAGTGTAAGACCATGTCCAGTACATGGCATCGGCAGT-GAGAT
1 GAGAGCCAGTGTAAGA-CATGTCCAGGACAT-GCATCAGC-CTCGAGAT
* * **
33881937 GAGAGCTAATGTAAGACATGTCTGGGACATGCATCAGCCTCGAGAT
1 GAGAGCCAGTGTAAGACATGTCCAGGACATGCATCAGCCTCGAGAT
** * *
33881983 GTA-AGCCAGTGTAAGACATGTCTGGGATATGCATTAG-CTACGAG-T
1 G-AGAGCCAGTGTAAGACATGTCCAGGACATGCATCAGCCT-CGAGAT
* * *
33882028 TA-AGCTAGTGTAAGACCATGTTCAGGACATGGCATC
1 GAGAGCCAGTGTAAGA-CATGTCCAGGACAT-GCATC
33882064 GGCATCCTAT
Statistics
Matches: 104, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
44 13 0.12
45 14 0.13
46 51 0.49
47 12 0.12
48 14 0.13
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCCAGGACATGCATCAGCCTCGAGAT
Found at i:33883069 original size:28 final size:29
Alignment explanation
Indices: 33883028--33883083 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
33883018 ACACAGGCTA
*
33883028 GGACACGGGTGTGT-C-ATGGCCGTGTGAG
1 GGACACGGGCGTGTGCTA-GGCCGTGTGAG
33883056 GGACACGGGCGTGTGCTAGGCCGTGTGA
1 GGACACGGGCGTGTGCTAGGCCGTGTGA
33883084 AAGCCCCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 13 0.52
29 11 0.44
30 1 0.04
ACGTcount: A:0.14, C:0.20, G:0.46, T:0.20
Consensus pattern (29 bp):
GGACACGGGCGTGTGCTAGGCCGTGTGAG
Found at i:33885863 original size:5 final size:4
Alignment explanation
Indices: 33885837--33885870 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
33885827 AATTGTGTGA
33885837 AAAT AAAT AAAT AAAT AAAT AAAAT AAAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT -AAAT -AAAT AAAT
33885871 GGTGACAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 20 0.69
5 9 0.31
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:33890180 original size:15 final size:15
Alignment explanation
Indices: 33890162--33890194 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
33890152 TGAATGTTCT
33890162 AATGT-TGAGATTATG
1 AATGTGTGA-ATTATG
33890177 AATGTGTGAATTATG
1 AATGTGTGAATTATG
33890192 AAT
1 AAT
33890195 TAGTAATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.82
16 3 0.18
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.39
Consensus pattern (15 bp):
AATGTGTGAATTATG
Found at i:33892158 original size:46 final size:46
Alignment explanation
Indices: 33892099--33892269 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
33892089 ACATTTCATA
33892099 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAG
* * * *
33892145 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
* * * *
33892191 GCCGATGCCATGTCCCAGACACGGTCTTAAACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTCTCAT-CTCGAG
* *
33892239 GCTGATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
33892270 AGCGCACAAA
Statistics
Matches: 105, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
46 56 0.53
47 26 0.25
48 22 0.21
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
Found at i:33892246 original size:94 final size:92
Alignment explanation
Indices: 33892003--33892277 Score: 272
Period size: 94 Copynumber: 2.9 Consensus size: 92
33891993 TAGGATGTAG
* * * * * **
33892003 TGCCGATGCCATGTCCCAGACATGGTCTTATACTGACTATCAAAATCAAGACCGACACTATGTCC
1 TGCCGATGCCATGTCCCAGACA-GGTCTTAAACTGGCT-TCATAATCGAGGCCGATGC-ATGTCC
*
33892068 CAGACATGGTCTTACACT-G-ACACATTTCA
63 CAGACAT-GTCTTACACTAGCACACATCTCA
* * *
33892097 TAGCCGATG-CATGTCCCAGACATGTCTTACACTGGCTTACAT-CTCGAGGCCGATGCATGTCCC
1 T-GCCGATGCCATGTCCCAGACAGGTCTTAAACTGGCTT-CATAATCGAGGCCGATGCATGTCCC
* * *
33892160 AGACATGTCTTACACTAGCTCTCGTCTCAA
64 AGACATGTCTTACACTAGCACACATCTC-A
* * *
33892190 TGCCGATGCCATGTCCCAGACACGGTCTTAAACTGGCTCTCATAAT-GTGGCTGATGCATGTCCT
1 TGCCGATGCCATGTCCCAGACA-GGTCTTAAACTGGCT-TCATAATCGAGGCCGATGCATGTCCC
*
33892254 AGACATGTCTTACACTAGCGCACA
64 AGACATGTCTTACACTAGCACACA
33892278 AATGACCCAA
Statistics
Matches: 150, Mismatches: 22, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
90 10 0.07
91 14 0.09
92 22 0.15
93 29 0.19
94 66 0.44
95 9 0.06
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACAGGTCTTAAACTGGCTTCATAATCGAGGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACACATCTCA
Found at i:33893776 original size:40 final size:40
Alignment explanation
Indices: 33893732--33893959 Score: 393
Period size: 40 Copynumber: 5.7 Consensus size: 40
33893722 GCAAACACAT
* * * *
33893732 TTGCCTTCTGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33893772 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33893812 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33893852 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33893892 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33893932 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
33893960 TCCAATGCTC
Statistics
Matches: 180, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 180 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:33902558 original size:40 final size:39
Alignment explanation
Indices: 33902391--33902572 Score: 289
Period size: 38 Copynumber: 4.7 Consensus size: 39
33902381 GCAAACACAT
* * *
33902391 TTGCCTTCGGGTCTTAACCCGGACATATCACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCACTCGCATAA
33902430 TTGCCTTCGGGTCTTAGCCCGGATATAT-ACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCACTCGCATAA
*
33902468 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCG--TAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAA
33902506 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAA
33902546 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
33902573 NNNNNNNNNN
Statistics
Matches: 134, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
38 73 0.54
39 26 0.19
40 35 0.26
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (39 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCACTCGCATAA
Found at i:33902567 original size:78 final size:77
Alignment explanation
Indices: 33902391--33902572 Score: 287
Period size: 78 Copynumber: 2.4 Consensus size: 77
33902381 GCAAACACAT
* *
33902391 TTGCCTTCGGGTCTTAACCCGGACATATCACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATATCACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
33902456 ATACTCGCATAA
66 ATACTCGCATAA
* *
33902468 TTGCCTTCGGGTCATAGCCCGGATATATCAAC-T-CGTAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATA
33902531 TATCAACTCGCATAA
65 TAT--ACTCGCATAA
33902546 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
33902573 NNNNNNNNNN
Statistics
Matches: 97, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
76 32 0.33
77 27 0.28
78 38 0.39
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (77 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
ATACTCGCATAA
Found at i:33915219 original size:514 final size:515
Alignment explanation
Indices: 33912573--33942036 Score: 55900
Period size: 514 Copynumber: 57.6 Consensus size: 515
33912563 NNNNNNNNNN
33912573 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCA-TTT-TA-AAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33912635 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33912700 AATGTA-AAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACT-ATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33912763 TCACAGATTGCTATA-T-TGAT-CGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33912825 TGGATCTCAACCATCGAA-AAA--TC-AATCAC-ATTCCCATTTTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33912885 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33912950 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
391 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
33913015 TTTGCAACATCATCATATACATGCTAT-CAACAACATACCATTCTCACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33913075 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33913140 CCATTAAATCTACAA-T-TATATATTTAATAT-TATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33913202 AATGCAGAAACTTCCATATGAACTTACCTAG-AAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33913266 TCACAGATTGCTATA-TATGATCCGATACTGC-CACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33913329 TGGATCTCAACCATCGAATAAATCTCTAATCACGATT-CCA--TTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33913391 ACTTTCCATTCTTATCTAAACCATTTGTTAAA-T--T-CAGGTTCTTTTA-CCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
*
33913451 TTCAAACTCTTTAATTT-TATACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33913515 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33913575 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCA-TTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33913639 CCATTAAATCTACAATTATATATA-TT-A-ATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33913701 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGG--TAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33913764 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33913829 TGGATCTCAACCATCGAATAAATCTCTAATCACGATT-CCA-TTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33913892 ACTTTCCATT-TTATCTAAACCA-TT-TTAAATTCATACAGGTTCTTTTA-CCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33913953 TTCAAACTCTTTAATTTATAC-CACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33914017 TTGCAACATCATCATATACAT-CTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33914076 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCA-TTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33914140 CCATTAAAT-TACAA-TATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33914202 AATGCAGAAACTTCCATATGAACTTACC-AG-AAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33914265 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33914330 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33914394 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTA-CCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33914458 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33914523 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
*
33914583 CATGAATCTCTTCATATTTATCAAATATTTCTTA-TTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33914647 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33914712 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33914777 TCACAGATTGCTATA-TATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33914841 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33914906 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33914971 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACA-TTTAAA
391 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
33915035 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33915096 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33915161 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33915226 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33915291 TCACAGATTGCTATA-TATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33915355 TGGATCTCAACCATCGAATAAATCTCTAATCACGATT-CCATTTTTCC-TTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33915417 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTA-CCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33915481 TTCAAACTC-TTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33915545 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33915605 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33915669 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33915734 AATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33915799 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33915864 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33915928 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33915993 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33916058 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33916118 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCA-TTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33916181 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33916246 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33916311 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33916376 TGGATCTCAACCATCGAATAAATCTCTAATCACGATT-CCATTTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33916439 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33916504 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33916569 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
*
33916629 CATGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33916694 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33916759 AATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33916824 TCACAGATTGCTATA-TATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33916888 TGGATCTCAACCATCGAATAAATCTCTAATCACGATT-CCATTTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33916951 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33917016 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33917081 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33917141 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33917205 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33917270 AATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33917335 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33917400 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33917465 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33917530 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33917595 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
*
33917655 CATGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33917720 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33917785 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33917850 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33917915 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33917980 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33918045 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33918110 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33918170 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33918235 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33918300 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33918365 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33918430 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33918495 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33918560 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33918625 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33918685 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33918749 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33918814 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33918879 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33918944 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33919008 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33919073 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33919138 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33919198 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33919262 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33919327 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33919392 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33919457 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33919522 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33919587 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33919652 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33919712 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33919776 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33919841 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33919906 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33919971 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33920036 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33920101 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33920166 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33920226 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33920291 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33920356 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33920421 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33920486 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33920551 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33920616 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33920681 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33920741 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33920806 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33920871 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33920936 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33921001 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33921066 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33921131 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33921196 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33921256 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33921321 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33921386 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33921451 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33921516 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33921579 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33921644 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33921709 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
*
33921769 CATGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33921834 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33921899 AATGCAGAAACTTCCATATGAACTTACC-AGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33921963 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33922028 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33922093 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33922158 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33922223 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33922283 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33922348 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33922413 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33922478 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33922543 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33922607 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33922672 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33922737 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33922797 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33922861 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33922926 AATGCAGAAACTTCCATATGAACTTACC-AGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33922990 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33923055 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33923120 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33923185 TTCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
391 TTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
33923250 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33923311 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33923375 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33923440 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33923505 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33923570 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33923635 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33923700 TTCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
391 TTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
33923765 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33923826 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33923890 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33923955 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33924020 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33924085 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33924150 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33924215 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33924280 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33924340 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33924405 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33924470 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33924535 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33924600 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33924664 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33924729 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33924794 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33924854 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33924919 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33924984 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33925049 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33925114 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33925179 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33925244 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33925309 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33925369 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33925433 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33925498 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33925563 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33925628 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33925693 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33925758 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33925823 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33925883 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33925948 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33926013 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33926078 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33926143 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33926207 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33926272 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33926337 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33926397 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33926462 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33926527 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33926592 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33926657 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33926722 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33926787 TTCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
391 TTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
33926852 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33926913 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33926978 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33927043 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33927108 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33927173 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33927238 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33927303 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33927368 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33927428 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33927493 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33927558 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33927623 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33927688 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33927752 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33927817 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33927882 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33927942 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33928007 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33928072 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33928137 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33928202 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33928266 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33928331 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33928396 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33928456 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33928520 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33928585 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33928650 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33928715 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33928779 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33928844 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33928909 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33928969 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33929034 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33929099 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33929164 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33929229 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33929293 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33929358 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33929423 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33929483 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33929547 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33929612 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33929677 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33929742 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33929807 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33929872 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33929937 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33929997 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33930062 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33930127 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33930192 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33930257 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33930321 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33930386 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33930451 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33930511 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33930576 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33930641 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33930706 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33930771 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33930835 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33930900 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33930965 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33931025 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33931089 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33931154 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33931219 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33931284 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33931348 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33931413 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33931478 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33931538 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33931602 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33931667 AATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33931732 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33931797 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33931861 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33931926 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33931991 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33932051 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33932116 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33932181 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33932246 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33932311 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33932375 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCAT-CAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
*
33932439 TTCAAACTCTTTAATGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33932504 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33932564 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCA-TTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33932627 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33932692 AATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33932757 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33932822 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
* *
33932887 ACTTTCCATTCTTAT-TAAACCATTTGTTAAATTCAGACAGGTTCTTTTA-TCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33932950 TTCAAA-TCTTTAATTTATACACACATTAGTTATTTTGAATAACAATT-TCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33933013 TT-CAACATCATCATATACATGCTATCCAACAAC-TACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33933071 CATGAATCTCTTCA-ATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33933135 CCATTAAATCTACAATTATATATATTTAATATATATAC-AAAACACAATTAAAATATAATA-GAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33933198 AATGC--AAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33933261 TCACAGATTGCTATATTATGATCCGATACT-CTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33933325 TGGATCTCAACCATCGAATAAATCTCTAA-CACGATTCCCATTTTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33933389 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTT-CCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33933453 TTCAAACTCTTTAATTGTATACACACATTAGTTA-TTTGAATAACAATTCTCTATACATTTTAAA
391 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
33933517 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33933578 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33933642 CCATTAAAT-TACAA-T-TATATATTTAATATATATAC-AAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33933703 AATGTAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33933768 T-ACAGATTGCTATA-TATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
* *
33933831 AGGATCTCAACCATCGAA-AAATCTCTAATCACGATTCCCATTTTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33933895 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33933960 TTCAAACTCTTTAATTTATACACACATTAGTT-TTTTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33934024 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
*
33934084 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTCACGATTTGATCCA-TTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
*
33934147 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACGATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33934212 AATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33934277 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33934342 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTT-CTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33934405 ACTTTCCATTCTTATCTAAACCATTTG-TAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
*
33934469 TTCAAACTCTTTAATTGTATACACACATTAGTTCTTTTGAATAACAATTCTCTATA-ATTTTAAA
391 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
33934533 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCT-ACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
*
33934593 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCA-TTTGTATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33934657 CCATTAAATCTACAATTATATATATTTAATATAT-TACAAAAACACAATTAAAATATAATA-GAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33934720 AATGTAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCA-GGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33934784 TCACAGATT-CTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33934848 TGGATCTCAACCATCGAATAAATCTCTAATCACGATT-CCATTTTTCCTTTTTAT-ACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33934911 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGT-TCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
* *
33934975 TTCAAACTCTTTAATGTATACACACATTAGTTATTGTGAATAACAATTCTCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33935040 TTGCAACATCATCATATACATGC-ATCCAACAACATACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33935099 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCA-TTTATAT-AAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33935161 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATAC-AA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33935225 AATGCAGAAACTTCCATATGAACTTACC-AGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33935289 TCACAGATTGCTATATTATGATCCGATACTGCTCACT-GAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33935353 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
* *
33935418 ACTTTCCATTCTTAT-TAAACCATTTGTTAAATTCATACAGGTTCTTTTA-TCATTTCGTATGAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33935481 TTCAAA-TCTTTAATTTATACACACATTAGTTATTTTGAATAACAATT-TCTATACATTTTAAAT
391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
33935544 TTGCAACATCATCATATACATGCTATCCAACAAC-TACCATTCTCACATCCATTCAATGT
456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33935603 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCA-TTT-TATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33935666 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33935731 AATGTAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33935796 TCACAGATTGCTATATTATGATCCGATACTGCT-ACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33935860 TGGATCTCAACCATCGAATAAATCTCTAA-CACGATT-CCATTTTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33935923 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTT-CCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33935987 TTCAAACTCTTTAATTGTATACACACATTAGTTA-TTTGAATAACAATTCTCTATACATTTTAAA
391 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
33936051 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33936112 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33936176 CCATTAAAT-TACAA-T-TATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33936238 AATG-AGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33936302 TCACAGATTGCTATA-TATGA-CCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
33936365 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33936430 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33936495 TTCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
391 TTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
33936560 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33936621 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
*
33936686 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACGATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
33936751 AATGCAGAAACTTCCATATGAACTTACC-AG-AAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33936814 TCACAGATTGCTATATTATGATCCGATACTGCT-ACTCGAGCTGTCGAGAAT-CATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33936877 T-GATCTCAACCATCGAA-AAATCTCTAATCAC-ATTCCCATTTTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33936939 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTA-CCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33937003 TTCAAACTCTTTAATTGTATACACACATT-GTT-TTTTGAATAACAATTCTCTATACATTTTAAA
391 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
* *
33937066 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTAACATCCATCCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33937127 CATGAATCTCTTCATATTTATCAA-TATTTCTTATTTT-CGATTTGATCCA-TTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
33937189 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33937254 AATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33937319 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33937384 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTATT-CTTTTTATAA-CATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
*
33937447 ACTTTCCATTCTTATCTAAACCATTTGTCAAATTCATACAGGTTCTTTTA-CCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33937511 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATA-ATTTTAAA
391 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
33937575 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCT-ACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33937635 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTT-TATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
* *
33937699 CCATTAAATCTACAATTATATATATTTAATATATCTAC-AAAACACAATTAAAATATAATATGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33937763 AATGTAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCA-GGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
33937827 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33937892 TGGATCTCAACCATCGAATAAATCTCTAATCACGATT-CCATTTTTCC-TTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
33937955 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33938020 TTCAAACTCTTTAATTGTATACACACATTAGTTA-TTTGAATAACAATTCTCTATACATTTTAAA
391 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
*
33938084 TTTGCCACATCAT-ATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
* *
33938144 CATGAATCTCTTCATATATATCAAATATTTCTTATTTTACGATTTGATCCA-TTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
*
33938208 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATCAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33938273 AATGCAGAAAC-TCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
* * *
33938337 TCACGGATTTCTATATTATGATCCGATACTGCTCACTCGAGCAGT-GAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33938401 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
* *
33938466 ACTTTCAATTCTTATCTAAACCATTTGTTAAATTCATATAGGTTCTTTTACCCAATTTCGTATCA
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCC-ATTTCGTATCA
* * *
33938531 TTTCAAACTCTTTAATTGTATACACACATTAGTTCTTTTGTATACACATTTCTCTATACATTTTA
390 TTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATA-ACAATTCTCTATACATTTTA
*
33938596 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTAACATCCATTCAATGT
453 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
* *
33938659 CATGAATCACTTCATATTTATCAA-TATTTCTTA-TTTATCGATTTGATCCATTTCATATAAAAA
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTA-CGATTTGATCCATTTTATATAAAAA
33938722 GCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGA
65 GCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGA
* * *
33938787 AAATGCAGAACCTTCCTTATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATC
130 AAATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATC
33938852 ATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTG
195 ATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTG
*
33938917 CTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATTACCATAAT
260 CTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
*
33938982 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCGTTTCGTATCA
325 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCA
* * * *
33939047 TTTGAAACTCTTTAATTGTATACACATATTAGTTATTGTAAATAACAATTCTCTATACATTTTAA
390 TTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
* * * *
33939112 ATTTGCAACATCATCATAAACATGCTATCCAACAACATACCATTCT-ACAACCATTTACTGT
454 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
*
33939173 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTGTATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
*
33939238 CCATTAAATCTACAATT-TATATATTTAATATATATACAAAAACACAATTAAAATATAATATGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33939302 AATGTAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
*
33939367 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGTTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33939432 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATTACCATAATC
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
* *
33939497 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTGCCAATTTCGTATCAT
326 ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
33939562 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
391 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
*
33939627 TTTGCAACATCATCATATACGTGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
455 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
*
33939688 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATCTAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
* * * *
33939753 CCATTAAGTCTACAATTATATATGTTTAATATATTTACAGAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
* *
33939818 AATGCAGAAACTTGCATATGAACTTACCTAGAAAATGGCAACGAGAACA-TTTCAGGGACTAATC
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAA-AGTTTCAGGGACTAATC
* *
33939882 ATCATAGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTG
195 ATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTG
33939947 CTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
260 CTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
* * *
33940012 TACTTTCCATTCTTATCTAAACCATTTGTTAAA-TCTTACAGGTTCTTTTACCAATTT-GTATCA
325 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCA
* *
33940075 TTTCAAACTCTTTAATTGTATACATACATTAGTTATTTTCAATAACAATTCTCTATACATTTTAA
390 TTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
33940140 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
454 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
* * *
33940202 CATGAATCTCTTCATATTTATCAAATATTTCTTATTTTAGGATTTGATACATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
* *
33940267 CCATTAAATCTAAAATTATATATATATATAATATATATACAAAAACACAATTACAATATAATACG
66 CCATTAAATCTACAATTATATATAT-T-TAATATATATACAAAAACACAATTAAAATATAATACG
33940332 AAAATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
129 AAAATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
*
33940397 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTTT
194 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
* *
33940462 GCTGGATCTCAACCATCGAATAAATCTTTAATCACGGTTCCCATTTCTT-CTTTTTATAACCATA
259 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTT-TTCCTTTTTATAACCATA
* * *
33940526 ATCACTTTCCGTTCTTATCTAAACCATCTGTTAAATTCATACAGGTTTTTTTACCCATTTCGTAT
323 ATCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTAT
*
33940591 CATTTCAAACTCTTTAATTT-TATACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
388 CATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
33940655 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
453 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
* * *
33940718 CATGAATCTCTTCATATTTATCAAATATTTCTTATTTTAGGATTTGATCCATTTAATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
*
33940783 CCATTAAATCTAAAATTATATATA--TAATATATATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
* *
33940846 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGCTTCAGGGGCTAATCA
131 AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
*
33940911 TCATAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
196 TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
*
33940976 TGGATCTCAACCATCGAATAAATCTCTAATCACGGTTCCCATTTCTT-CTTTTTATAACCATAAT
261 TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTT-TTCCTTTTTATAACCATAAT
*
33941040 CACTTTCCATTCTTATCTAAACCATCTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCA
325 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCA
33941105 TTTCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
390 TTTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
33941170 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
454 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
33941232 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACG-TTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
* * * *
33941296 CCATTAAGTCTACAATTATATATGTTTAATATATTTACAAAAACACAGTTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33941361 AATGCAGAAACTTCCATATGAACTTA-CTGAGAAAATGGCAACTAGAAAAATTT-AGGGACTAAT
131 AATGCAGAAACTTCCATATGAACTTACCT-AGAAAATGGCAACTAG-AAAGTTTCAGGGACTAAT
* *
33941424 CATCACAGATTGCTATATTATGATCCGATACTACTCACTCGAGCTGTTGAGAATCCATAATTTGT
194 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
* * * *
33941489 GCTGGAACTCAACCATCAAATAAATCTCGAATCACGATTCCCAATTTTTCCTTTTTATTACCAT-
259 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCC-ATTTTTCCTTTTTATAACCATA
*
33941553 ATCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCAGTTCGTAT
323 ATCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTAT
* * *
33941618 CATTTCAAACTCTTTAATTCTATACACACATTAGTTATTGTCAATAACAATTCTCTATGCATTTT
388 CATTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTT
33941683 AAATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
452 AAATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
*
33941747 CATGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
1 CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
* *
33941812 ACATTAAATCTACAA-T-TATATATTTAATATACATACAAAAACACAATTAAAATATAATACGAA
66 CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
*
33941875 AATGCAGAAACTTCCATATGAACTTA-CTGAGAAAATGGCAACTAGAAAGTTTCATGGA-TGAAT
131 AATGCAGAAACTTCCATATGAACTTACCT-AGAAAATGGCAACTAGAAAGTTTCAGGGACT-AAT
33941938 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
194 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
33942003 GCTGGATCTCAACCATCGAATAAATCTCTAATCA
259 GCTGGATCTCAACCATCGAATAAATCTCTAATCA
33942037 TGTAACACCC
Statistics
Matches: 28532, Mismatches: 226, Indels: 396
0.98 0.01 0.01
Matches are distributed among these distances:
498 28 0.00
499 216 0.01
500 206 0.01
501 321 0.01
502 336 0.01
503 308 0.01
504 391 0.01
505 750 0.03
506 1109 0.04
507 750 0.03
508 962 0.03
509 1157 0.04
510 570 0.02
511 1119 0.04
512 1637 0.06
513 3710 0.13
514 7696 0.27
515 5665 0.20
516 1418 0.05
517 160 0.01
518 23 0.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.36
Consensus pattern (515 bp):
CATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAG
CCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAA
AATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
TCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGC
TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAATC
ACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCAT
TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGT
Found at i:33943639 original size:28 final size:27
Alignment explanation
Indices: 33943576--33943727 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
33943566 ATATTAAGTC
* * *
33943576 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
33943603 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
33943631 CGCACACTTAGTGCTACGTAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
33943658 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
33943686 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
33943713 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33943728 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:33943660 original size:55 final size:55
Alignment explanation
Indices: 33943576--33943727 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
33943566 ATATTAAGTC
* * *
33943576 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
33943631 CGCACACTTAGTGCTACGTAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
33943686 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
33943728 GCACAATTTA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:33952425 original size:40 final size:40
Alignment explanation
Indices: 33952381--33952608 Score: 402
Period size: 40 Copynumber: 5.7 Consensus size: 40
33952371 GCAAACACAT
* * *
33952381 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33952421 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33952461 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33952501 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33952541 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33952581 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
33952609 TCCAATGCTC
Statistics
Matches: 181, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:33961120 original size:40 final size:40
Alignment explanation
Indices: 33961076--33961263 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
33961066 GCAAACACAT
* * *
33961076 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33961116 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33961156 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33961196 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33961236 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
33961264 TCCAATGCTC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:33967758 original size:20 final size:20
Alignment explanation
Indices: 33967728--33967779 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
33967718 ATATCATTAT
33967728 TATTT-ATTTATGTATTTTC
1 TATTTAATTTATGTATTTTC
* *
33967747 TATTTAATTTATTTTTTTTC
1 TATTTAATTTATGTATTTTC
33967767 TATCTTTAATTTA
1 TA--TTTAATTTA
33967780 AAAAAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 5 0.18
20 14 0.50
22 9 0.32
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (20 bp):
TATTTAATTTATGTATTTTC
Found at i:33968481 original size:10 final size:10
Alignment explanation
Indices: 33968447--33968500 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
33968437 AAAAATCTTT
33968447 TAAAAATACA
1 TAAAAATACA
33968457 -AAAAGATCACA
1 TAAAA-AT-ACA
33968468 -AAAAATACA
1 TAAAAATACA
*
33968477 TAAAAATAAA
1 TAAAAATACA
*
33968487 TAAAAATAAA
1 TAAAAATACA
33968497 TAAA
1 TAAA
33968501 TTTTAGAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
9 7 0.17
10 26 0.65
11 7 0.17
ACGTcount: A:0.74, C:0.07, G:0.02, T:0.17
Consensus pattern (10 bp):
TAAAAATACA
Found at i:33969441 original size:18 final size:19
Alignment explanation
Indices: 33969418--33969454 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
33969408 GAATTTCTAA
33969418 AATTTTAGTTTTTT-TAAT
1 AATTTTAGTTTTTTGTAAT
33969436 AATTTTAGTTTTTTGTAAT
1 AATTTTAGTTTTTTGTAAT
33969455 TTATTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (19 bp):
AATTTTAGTTTTTTGTAAT
Found at i:33969484 original size:18 final size:17
Alignment explanation
Indices: 33969420--33969486 Score: 64
Period size: 18 Copynumber: 3.8 Consensus size: 17
33969410 ATTTCTAAAA
*
33969420 TTTTAGTTTTTTTAATAA
1 TTTTAGTTTTTTTAAT-T
33969438 TTTTAGTTTTTTGTAATT
1 TTTTAGTTTTTT-TAATT
* *
33969456 TATTA-TATTTTTAATGT
1 TTTTAGTTTTTTTAAT-T
33969473 TTTTAGGTTTTTTT
1 TTTTA-GTTTTTTT
33969487 GGATGACGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
16 4 0.10
17 10 0.25
18 16 0.40
19 10 0.25
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.70
Consensus pattern (17 bp):
TTTTAGTTTTTTTAATT
Found at i:33969789 original size:17 final size:16
Alignment explanation
Indices: 33969767--33969801 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
33969757 TGAAAAATAC
*
33969767 ATTATATTTGACATATA
1 ATTATATTAGA-ATATA
33969784 ATTATATTAGAATATA
1 ATTATATTAGAATATA
33969800 AT
1 AT
33969802 GCAATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.46
Consensus pattern (16 bp):
ATTATATTAGAATATA
Found at i:33969967 original size:16 final size:16
Alignment explanation
Indices: 33969946--33969981 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
33969936 AGAACACCTA
33969946 CAAGGTTAAGACTTTG
1 CAAGGTTAAGACTTTG
33969962 CAAGGTTAAGACTTTG
1 CAAGGTTAAGACTTTG
33969978 CAAG
1 CAAG
33969982 CCCACAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (16 bp):
CAAGGTTAAGACTTTG
Found at i:33972354 original size:40 final size:41
Alignment explanation
Indices: 33972283--33972363 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 41
33972273 GTTTACTGAT
* * ** **
33972283 TAATGTATATCTGATATTGTTACTGTGATGGG-TTAGGCCC
1 TAATGCATATCTGATACTGAAACTGAAATGGGCTTAGGCCC
33972323 TAATGCATATCTGATACTGAAACTGAAATGGGCTTAGGCCC
1 TAATGCATATCTGATACTGAAACTGAAATGGGCTTAGGCCC
33972364 AGACTGCATT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 26 0.76
41 8 0.24
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (41 bp):
TAATGCATATCTGATACTGAAACTGAAATGGGCTTAGGCCC
Found at i:33978808 original size:76 final size:76
Alignment explanation
Indices: 33978682--33978869 Score: 340
Period size: 76 Copynumber: 2.5 Consensus size: 76
33978672 TGAATACAAT
*
33978682 TTAAATAATAAAATGTAAGATTTGAAACTAATAATAGCATATGAATACAATTTACTTAAGTAATT
1 TTAAATAATGAAATGTAAGATTTGAAACTAATAATAGCATATGAATACAATTTACTTAAGTAATT
33978747 TATCAAAACAC
66 TATCAAAACAC
33978758 TTAAATAATGAAATGTAAGATTTGAAACTAATAATAGCATATGAATACAATTTACTTAAGTAATT
1 TTAAATAATGAAATGTAAGATTTGAAACTAATAATAGCATATGAATACAATTTACTTAAGTAATT
33978823 TATCAAAACAC
66 TATCAAAACAC
* **
33978834 TAAAATAATGAAATGTAAGATTCAAAACTAATAATA
1 TTAAATAATGAAATGTAAGATTTGAAACTAATAATA
33978870 ACACATATGC
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 108 1.00
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.32
Consensus pattern (76 bp):
TTAAATAATGAAATGTAAGATTTGAAACTAATAATAGCATATGAATACAATTTACTTAAGTAATT
TATCAAAACAC
Found at i:33998198 original size:15 final size:16
Alignment explanation
Indices: 33998178--33998215 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
33998168 TTAATTTTGT
*
33998178 ATTTTAATTTC-ATCA
1 ATTTTAATTTCTATAA
33998193 ATTTTAATTTCTATAA
1 ATTTTAATTTCTATAA
33998209 ATTTTAA
1 ATTTTAA
33998216 AATTTTAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTAATTTCTATAA
Found at i:34005828 original size:16 final size:16
Alignment explanation
Indices: 34005807--34005837 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34005797 TGCATTGGCG
*
34005807 AACACACATGGCGAAC
1 AACACAAATGGCGAAC
34005823 AACACAAATGGCGAA
1 AACACAAATGGCGAA
34005838 AATATATGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.26, G:0.19, T:0.06
Consensus pattern (16 bp):
AACACAAATGGCGAAC
Found at i:34008580 original size:25 final size:24
Alignment explanation
Indices: 34008546--34008592 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
34008536 GTGTGGGTCC
34008546 TAATCTGTATCTGTTTG-ATGTTTGA
1 TAATCTGTA--TGTTTGCATGTTTGA
34008571 TAATCTGTATGTTTGCATGTTT
1 TAATCTGTATGTTTGCATGTTT
34008593 AATGCTACTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.19, C:0.09, G:0.19, T:0.53
Consensus pattern (24 bp):
TAATCTGTATGTTTGCATGTTTGA
Found at i:34009119 original size:54 final size:54
Alignment explanation
Indices: 34009032--34009139 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
34009022 TTTTATCGAG
*
34009032 TTAGCTCCGTTTTCAAAATCCCTTTCATATGACATCGCTAGATTCGGCCATAAC
1 TTAGCTCCGTTTTCAAAATCCCTTTCATATGACATCGCCAGATTCGGCCATAAC
* *
34009086 TTAGCTCCGTTTTCAAAATTCCTTTCATGTGACATCGCCAGATTCGGCCATAAC
1 TTAGCTCCGTTTTCAAAATCCCTTTCATATGACATCGCCAGATTCGGCCATAAC
34009140 GTCTACGTCG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (54 bp):
TTAGCTCCGTTTTCAAAATCCCTTTCATATGACATCGCCAGATTCGGCCATAAC
Found at i:34014218 original size:47 final size:46
Alignment explanation
Indices: 34014144--34014272 Score: 138
Period size: 48 Copynumber: 2.8 Consensus size: 46
34014134 CTCAATCGAT
*
34014144 AAGTATTTATACCAT--CCGTAGCCAAATCAAGGTA-ACTTATCCA
1 AAGTACTTATACCATGGCCGTAGCCAAATCAAGGTACACTTATCCA
* * * *
34014187 GGAGTACTTATACCATGGCTCGTAGCTAAATCAAGGTATCTCTTCTCCA
1 -AAGTACTTATACCATGGC-CGTAGCCAAATCAAGGTA-CACTTATCCA
* *
34014236 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACTTATACCATGG-CCGTAGCCAAATCAAGGTA
34014273 TAAATTATAC
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
44 13 0.19
46 1 0.01
47 17 0.24
48 31 0.44
49 8 0.11
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (46 bp):
AAGTACTTATACCATGGCCGTAGCCAAATCAAGGTACACTTATCCA
Found at i:34014410 original size:21 final size:21
Alignment explanation
Indices: 34014384--34014441 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 21
34014374 TTTCCAATAC
34014384 CAAATCATAGTCGAATCA-TTT
1 CAAATCAT-GTCGAATCATTTT
*
34014405 CAAATCACTGTCAAATCATTTT
1 CAAATCA-TGTCGAATCATTTT
34014427 CAAATCATGGTCGAA
1 CAAATCAT-GTCGAA
34014442 CAAGTTCATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 16 0.50
22 16 0.50
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (21 bp):
CAAATCATGTCGAATCATTTT
Found at i:34014434 original size:11 final size:11
Alignment explanation
Indices: 34014397--34014434 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
34014387 ATCATAGTCG
34014397 AATCA-TTTCA
1 AATCATTTTCA
* *
34014407 AATCACTGTCA
1 AATCATTTTCA
34014418 AATCATTTTCA
1 AATCATTTTCA
34014429 AATCAT
1 AATCAT
34014435 GGTCGAACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 5 0.21
11 19 0.79
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.37
Consensus pattern (11 bp):
AATCATTTTCA
Found at i:34015043 original size:21 final size:22
Alignment explanation
Indices: 34014994--34015041 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
34014984 TAGTATGCAT
34014994 AAAAACATAGAAATCCGACTAC
1 AAAAACATAGAAATCCGACTAC
34015016 AAAAACATAGAAATCCGAGCT-C
1 AAAAACATAGAAATCCGA-CTAC
34015038 AAAA
1 AAAA
34015042 CACTTACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.56, C:0.21, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAAACATAGAAATCCGACTAC
Found at i:34017825 original size:21 final size:21
Alignment explanation
Indices: 34017801--34017844 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
34017791 TTGTCTGTTC
*
34017801 TTTCTTTCTT-TTTCTATTTTA
1 TTTCTTTATTATTT-TATTTTA
34017822 TTTCTTTATTATTTTATTTTA
1 TTTCTTTATTATTTTATTTTA
34017843 TT
1 TT
34017845 ATTATATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTCTTTATTATTTTATTTTA
Found at i:34017836 original size:16 final size:16
Alignment explanation
Indices: 34017805--34017849 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
34017795 CTGTTCTTTC
*
34017805 TTTCTTTTTCTATTTTA
1 TTTCTTTAT-TATTTTA
34017822 TTTCTTTATTATTTTA
1 TTTCTTTATTATTTTA
34017838 TTT-TATTATTAT
1 TTTCT-TTATTAT
34017850 ATTTTAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 1 0.04
16 17 0.65
17 8 0.31
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTCTTTATTATTTTA
Found at i:34017842 original size:13 final size:13
Alignment explanation
Indices: 34017826--34017877 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
34017816 ATTTTATTTC
34017826 TTTATTATTTTAT
1 TTTATTATTTTAT
*
34017839 TTTATTATTATAT
1 TTTATTATTTTAT
*
34017852 TTTAGTAATTATTATT
1 TTTA-TTATT-TTA-T
34017868 TTTATTATTT
1 TTTATTATTT
34017878 ACTTATAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 16 0.50
14 5 0.16
15 6 0.19
16 5 0.16
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (13 bp):
TTTATTATTTTAT
Found at i:34017883 original size:17 final size:17
Alignment explanation
Indices: 34017831--34017884 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
34017821 ATTTCTTTAT
*
34017831 TATTTTATTTTATTATTA
1 TATTTTATTAT-TTATTA
* *
34017849 TATTTTAGTAATTATTA
1 TATTTTATTATTTATTA
34017866 T-TTTTATTATTTACTTA
1 TATTTTATTATTTA-TTA
34017883 TA
1 TA
34017885 ATATAAGTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
16 10 0.34
17 11 0.38
18 8 0.28
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTTTATTATTTATTA
Found at i:34018079 original size:20 final size:21
Alignment explanation
Indices: 34018054--34018106 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
34018044 TAATCCTTAC
34018054 ACTAAATTAACCTTAATT-AA
1 ACTAAATTAACCTTAATTAAA
*
34018074 ACTAAATTTA-CTTAATTAAA
1 ACTAAATTAACCTTAATTAAA
34018094 ATCT-AATTAACCT
1 A-CTAAATTAACCT
34018107 CTCACTTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 7 0.25
20 17 0.61
21 4 0.14
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (21 bp):
ACTAAATTAACCTTAATTAAA
Found at i:34025034 original size:17 final size:18
Alignment explanation
Indices: 34025000--34025035 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
34024990 TAACTTTTCC
*
34025000 CTTTTTCTTTTCTCATTT
1 CTTTTTCTTTCCTCATTT
34025018 CTTTTTCTTTCCT-ATTT
1 CTTTTTCTTTCCTCATTT
34025035 C
1 C
34025036 ATTCCACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.69
Consensus pattern (18 bp):
CTTTTTCTTTCCTCATTT
Found at i:34025078 original size:24 final size:24
Alignment explanation
Indices: 34025062--34025123 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 24
34025052 TCTTTCTTTC
34025062 TTTT-TTATTTTATTTCTTTATTA
1 TTTTATTATTTTATTTCTTTATTA
*
34025085 TTTTATTATTTTATTATATTATATTA
1 TTTTATTATTTTATT-TCTT-TATTA
34025111 TTATTA-TATTTTA
1 TT-TTATTATTTTA
34025124 GTAATTATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 4 0.12
24 10 0.29
25 3 0.09
26 14 0.41
27 3 0.09
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTATTATTTTATTTCTTTATTA
Found at i:34025089 original size:8 final size:8
Alignment explanation
Indices: 34025062--34025139 Score: 72
Period size: 8 Copynumber: 9.4 Consensus size: 8
34025052 TCTTTCTTTC
34025062 TTTT-TTA
1 TTTTATTA
34025069 TTTTATT-
1 TTTTATTA
34025076 TCTTTATTA
1 T-TTTATTA
34025085 TTTTATTA
1 TTTTATTA
34025093 TTTTATTA
1 TTTTATTA
34025101 TATTATATTA
1 T-TT-TATTA
34025111 TTATTA-TA
1 TT-TTATTA
*
34025119 TTTTAGTAA
1 TTTTA-TTA
34025128 TTATTATTA
1 TT-TTATTA
34025137 TTT
1 TTT
34025140 ACTTATAATA
Statistics
Matches: 60, Mismatches: 2, Indels: 17
0.76 0.03 0.22
Matches are distributed among these distances:
7 8 0.13
8 29 0.48
9 13 0.22
10 10 0.17
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.71
Consensus pattern (8 bp):
TTTTATTA
Found at i:34025093 original size:3 final size:3
Alignment explanation
Indices: 34025079--34025138 Score: 60
Period size: 3 Copynumber: 21.7 Consensus size: 3
34025069 TTTTATTTCT
34025079 TTA TTA TT- TTA TTA TT- TTA TTA -TA TTA -TA TTA TTA TTA -TA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
34025121 TTA GTAA TTA TTA TTA TT
1 TTA -TTA TTA TTA TTA TT
34025139 TACTTATAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
2 12 0.25
3 34 0.71
4 2 0.04
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:34025104 original size:13 final size:13
Alignment explanation
Indices: 34025082--34025138 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
34025072 TATTTCTTTA
*
34025082 TTATTTTATTATT
1 TTATTATATTATT
*
34025095 TTATTATATTATA
1 TTATTATATTATT
34025108 TTATTAT-TATATT
1 TTATTATAT-TATT
*
34025121 TTAGTA-ATTATT
1 TTATTATATTATT
34025133 ATTATT
1 -TTATT
34025139 TACTTATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
12 5 0.14
13 31 0.86
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (13 bp):
TTATTATATTATT
Found at i:34025138 original size:26 final size:27
Alignment explanation
Indices: 34025079--34025139 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
34025069 TTTTATTTCT
*
34025079 TTATTATTTTATTATTTTATTATATTA
1 TTATTATTTTATTATTTTAGTATATTA
34025106 -TATTATTATTA-TATTTTAGTA-ATTA
1 TTATTATT-TTATTATTTTAGTATATTA
34025131 TTATTATTT
1 TTATTATTT
34025140 ACTTATAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
25 5 0.16
26 23 0.74
27 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (27 bp):
TTATTATTTTATTATTTTAGTATATTA
Found at i:34025343 original size:20 final size:20
Alignment explanation
Indices: 34025318--34025368 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
34025308 ATCCTTACAC
*
34025318 TAAATTAACCTTAATTAAGA
1 TAAATTAACCTTAATTAAAA
*
34025338 TAAATTTA-CTTAATTAAAA
1 TAAATTAACCTTAATTAAAA
*
34025357 TCTAATTAACCT
1 T-AAATTAACCT
34025369 CTCACTTAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 11 0.44
20 12 0.48
21 2 0.08
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (20 bp):
TAAATTAACCTTAATTAAAA
Found at i:34026608 original size:15 final size:15
Alignment explanation
Indices: 34026588--34026617 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34026578 CAATTTATTT
*
34026588 ATATTAGGATAATTA
1 ATATTAAGATAATTA
34026603 ATATTAAGATAATTA
1 ATATTAAGATAATTA
34026618 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:34026645 original size:27 final size:26
Alignment explanation
Indices: 34026584--34026646 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
34026574 ACTCCAATTT
34026584 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
34026611 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
34026639 ATTTTATT
1 ATTTTATT
34026647 TTAATTATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:34029437 original size:20 final size:22
Alignment explanation
Indices: 34029397--34029437 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
34029387 TTAACCCCAT
34029397 ATGGTGTGTAGGGATGGATGGAG
1 ATGGTGTGTA-GGATGGATGGAG
34029420 ATGGTGTGTA-GA-GGATGG
1 ATGGTGTGTAGGATGGATGG
34029438 GGCTATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 2 0.11
23 10 0.56
ACGTcount: A:0.22, C:0.00, G:0.51, T:0.27
Consensus pattern (22 bp):
ATGGTGTGTAGGATGGATGGAG
Found at i:34031235 original size:35 final size:35
Alignment explanation
Indices: 34031191--34031259 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
34031181 TCTCCGGAGT
*
34031191 TTGGAAAATATGGAAAGTAATCTTCAAAGATATGC
1 TTGGAAAATATGGAAAGGAATCTTCAAAGATATGC
* * * *
34031226 TTGGCAAATATGGAATGGGATCTTGAAAGATATG
1 TTGGAAAATATGGAAAGGAATCTTCAAAGATATG
34031260 TGATCCTAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (35 bp):
TTGGAAAATATGGAAAGGAATCTTCAAAGATATGC
Found at i:34046087 original size:16 final size:17
Alignment explanation
Indices: 34046068--34046101 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
34046058 ATTTGGAAAA
34046068 TCTAT-TATTGGCAAAC
1 TCTATATATTGGCAAAC
*
34046084 TCTATATTTTGGCAAAC
1 TCTATATATTGGCAAAC
34046101 T
1 T
34046102 TTACCCCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (17 bp):
TCTATATATTGGCAAAC
Found at i:34047328 original size:34 final size:34
Alignment explanation
Indices: 34047285--34047374 Score: 117
Period size: 34 Copynumber: 2.6 Consensus size: 34
34047275 TAGTTCACTT
* * *
34047285 ATAACATAGGTTTGCATATCAGCATAAGTCATAC
1 ATAACATAGGTTCGCATAACAGAATAAGTCATAC
* * *
34047319 ATAACATAGGCTCGTATAACAGAATAATTCATAC
1 ATAACATAGGTTCGCATAACAGAATAAGTCATAC
*
34047353 ATAACATAGGTTCGCATCACAG
1 ATAACATAGGTTCGCATAACAG
34047375 TATAGTTTGC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (34 bp):
ATAACATAGGTTCGCATAACAGAATAAGTCATAC
Done.