genome.fa.s7.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  117  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35206257--35206428	45	3.8	45	85	3	240	32	19	23	24	1.98
35206257--35206425	90	1.9	89	91	3	277	31	20	23	24	1.98
35206392--35206562	88	2.0	88	89	3	265	31	22	17	28	1.96
35207874--35207935	26	2.5	26	76	10	67	22	11	1	64	1.34
35214961--35214990	4	7.2	4	92	7	51	50	3	0	46	1.18
35224774--35224872	30	3.3	30	88	0	153	18	5	48	28	1.69
35225612--35226173	87	6.7	86	74	17	375	35	18	16	29	1.93
35226014--35226449	148	3.0	146	95	1	791	32	21	16	30	1.95
35226563--35226804	73	3.3	73	88	1	340	34	21	16	27	1.95
35226797--35226831	13	2.5	15	81	18	56	51	5	20	22	1.68
35226802--35226831	13	2.3	13	100	0	60	53	6	20	20	1.67
35226342--35227541	261	4.7	247	76	14	702	34	20	16	28	1.95
35226961--35226995	14	2.5	14	95	0	61	57	2	20	20	1.54
35226886--35227384	86	5.9	84	78	11	418	33	19	16	30	1.94
35227142--35227476	75	4.3	75	72	16	292	35	18	15	30	1.92
35226854--35227556	161	4.3	161	77	11	707	34	19	16	29	1.94
35226854--35227543	247	2.8	243	77	15	711	33	20	16	30	1.94
35227397--35227555	87	1.8	87	87	5	241	33	20	16	28	1.94
35234206--35234240	16	2.3	15	90	5	52	62	2	2	31	1.24
35234354--35234413	23	2.9	20	70	15	59	56	5	6	31	1.47
35234391--35234477	25	3.6	23	77	13	86	57	5	5	31	1.46
35234469--35234533	14	4.6	14	75	19	55	56	1	4	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35234477--35234607	25	5.6	25	74	13	100	54	3	6	35	1.41
35234479--35234607	23	5.5	23	71	15	70	55	3	6	35	1.41
35234563--35234607	24	1.9	23	86	13	65	60	0	4	35	1.17
35235086--35235184	30	3.3	30	89	0	162	18	6	48	27	1.71
35235901--35236381	90	5.4	88	79	11	380	35	18	16	28	1.93
35235864--35236382	180	2.9	175	79	11	545	36	18	16	27	1.93
35236331--35237082	146	4.9	146	73	16	653	33	20	16	29	1.94
35236339--35236696	75	4.9	72	83	6	425	33	20	15	30	1.94
35236828--35237083	73	3.5	74	86	5	385	31	21	16	31	1.95
35237273--35237317	13	3.4	13	87	6	72	68	6	11	13	1.37
35237101--35237389	100	2.9	101	88	3	415	39	18	17	24	1.92
35237297--35237465	73	2.3	74	86	2	232	33	20	18	28	1.96
35238369--35238456	43	2.1	41	85	6	113	13	20	14	51	1.76
35244198--35244232	16	2.3	15	90	5	52	62	2	2	31	1.24
35244360--35244463	48	2.1	49	81	8	115	58	5	7	27	1.49
35244382--35244460	25	3.2	24	75	20	74	58	6	7	27	1.50
35244459--35244519	15	4.1	14	72	19	52	57	1	4	36	1.30
35244467--35244590	23	5.3	24	76	6	103	54	3	6	35	1.42
35245073--35245171	30	3.3	30	86	0	153	18	7	48	26	1.73
35245700--35245739	21	1.9	21	94	0	71	30	27	10	32	1.89
35245798--35246394	90	6.7	86	76	10	438	37	18	15	28	1.92
35246199--35246231	14	2.4	14	94	0	57	63	6	12	18	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35245840--35246394	182	3.1	177	77	10	459	38	18	15	27	1.91
35246301--35246690	73	5.3	74	84	7	508	34	20	17	28	1.95
35246323--35246690	146	2.5	146	95	0	646	32	20	17	29	1.95
35246820--35247158	75	4.5	76	83	5	433	31	20	15	31	1.94
35247169--35247385	99	2.2	99	89	2	328	42	17	16	23	1.88
35247338--35247399	14	4.6	14	90	6	92	62	6	14	16	1.50
35247338--35247399	27	2.3	28	86	5	92	62	6	14	16	1.50
35247240--35247467	114	2.0	114	87	0	330	42	17	16	23	1.89
35247379--35247547	73	2.3	74	85	2	223	33	20	17	28	1.95
35255420--35255473	18	3.3	18	66	28	57	22	7	48	22	1.75
35255415--35255513	30	3.3	30	89	0	162	17	6	48	28	1.70
35255448--35255503	18	3.4	18	65	27	52	19	7	44	28	1.77
35257506--35257591	12	7.0	12	69	17	52	36	1	2	60	1.17
35257559--35257591	10	3.0	11	86	13	50	39	0	0	60	0.97
35260526--35260559	11	2.9	12	86	8	52	0	11	2	85	0.71
35261603--35261634	15	2.2	14	94	5	55	81	0	0	18	0.70
35261581--35261634	19	2.8	20	80	5	65	74	3	3	18	1.12
35268659--35268708	21	2.5	20	83	9	57	64	2	2	32	1.16
35268814--35268888	29	2.5	29	80	10	80	33	13	9	44	1.76
35269715--35269747	15	2.2	15	94	0	57	42	0	0	57	0.98
35275821--35275856	16	2.1	18	90	10	58	13	8	0	77	0.98
35275945--35275976	13	2.5	13	94	0	55	21	31	40	6	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35276476--35276545	9	7.0	9	77	16	50	38	7	0	54	1.28
35276516--35276545	3	9.7	3	92	7	51	36	0	0	63	0.95
35276516--35276909	136	2.9	135	84	7	476	32	2	4	60	1.32
35276786--35276820	3	11.7	3	93	0	61	37	0	0	62	0.95
35276806--35276853	25	1.9	25	84	16	64	35	0	8	56	1.30
35276839--35276871	16	2.1	16	88	11	50	36	3	6	54	1.41
35282840--35282878	20	2.0	20	89	0	60	10	33	41	15	1.81
35302504--35302543	20	2.0	20	100	0	80	35	10	20	35	1.86
35307922--35307963	22	2.0	21	85	4	57	71	2	14	11	1.24
35310080--35310141	3	20.7	3	83	6	72	35	4	0	59	1.19
35310179--35310279	23	4.2	25	70	25	74	35	1	3	58	1.28
35310180--35310273	47	2.0	45	84	10	118	36	2	4	57	1.30
35310392--35310447	23	2.6	23	83	8	64	33	3	5	57	1.39
35310389--35310657	51	5.1	50	69	16	120	33	6	5	53	1.50
35310392--35310454	23	2.9	23	81	6	60	33	4	4	57	1.41
35310499--35310657	26	6.2	25	75	11	135	35	6	4	53	1.48
35310702--35310742	11	3.9	11	78	12	50	36	2	7	53	1.42
35314680--35314734	22	2.5	22	90	3	83	27	20	3	49	1.65
35314714--35314746	4	8.2	4	100	0	66	24	24	0	51	1.48
35323135--35323164	14	2.1	14	93	0	51	16	10	6	66	1.41
35322996--35323832	85	9.9	85	78	10	712	27	16	18	37	1.92
35323415--35323575	74	2.2	73	81	5	180	30	14	16	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35323641--35323669	14	2.1	14	100	0	58	13	13	6	65	1.45
35325656--35325833	27	6.6	27	82	3	178	29	27	15	27	1.96
35333829--35334005	27	6.6	27	83	5	196	29	27	15	27	1.96
35347172--35347254	3	27.7	3	87	4	114	34	3	0	61	1.13
35347294--35347394	23	4.2	25	70	25	74	35	1	3	58	1.28
35347295--35347388	47	2.0	47	82	10	113	36	2	4	57	1.30
35347507--35347562	23	2.6	23	83	8	64	33	3	5	57	1.39
35347507--35347569	23	2.9	23	81	6	60	33	4	4	57	1.41
35347614--35347780	26	6.6	25	75	11	135	35	7	4	52	1.48
35347816--35347856	11	3.9	11	78	12	50	36	2	7	53	1.42
35349185--35349298	27	4.2	27	84	4	133	35	22	22	19	1.96
35357124--35357211	27	3.3	27	79	6	99	36	21	25	17	1.94
35358806--35358913	26	4.2	26	95	0	198	36	26	5	31	1.80
35366451--35366564	46	2.5	46	91	0	183	31	26	19	22	1.98
35384349--35384450	23	4.4	23	75	22	79	55	5	7	30	1.52
35384366--35384498	24	5.6	23	69	22	73	57	3	6	33	1.39
35384399--35384515	21	5.0	22	75	18	85	57	3	5	34	1.38
35384454--35384515	22	2.9	22	85	2	63	58	1	4	35	1.29
35384545--35384593	24	2.0	24	84	8	62	57	8	6	28	1.52
35384705--35384746	3	14.0	3	94	0	75	64	0	2	33	1.07
35384846--35384908	3	20.3	3	80	6	72	61	6	0	31	1.21
35386968--35387075	54	2.0	54	87	0	153	38	18	12	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35386881--35387135	140	1.8	141	88	4	390	36	18	14	29	1.91
35387173--35387484	79	3.9	78	77	14	303	33	20	17	28	1.95
35387157--35387482	165	2.0	165	86	4	460	34	19	18	27	1.95
35389675--35389846	79	2.2	79	82	3	211	25	20	27	26	1.99
35389622--35389844	40	5.6	39	80	8	200	25	21	27	26	1.99
35389702--35389879	79	2.2	80	80	3	191	25	21	28	24	1.99
35399744--35399967	40	5.7	40	86	5	278	24	21	28	25	1.99
35399744--35399967	79	2.8	80	83	7	278	24	21	28	25	1.99
35399744--35400000	79	3.2	80	82	7	224	25	21	28	25	1.99
35407804--35407858	24	2.3	22	80	20	58	58	0	7	34	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295