Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 121 of 295
Found at i:36494820 original size:21 final size:22
Alignment explanation
Indices: 36494794--36494839 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
36494784 GACGTAGTTA
36494794 GGGAAAATCAGAGAA-GAAATT
1 GGGAAAATCAGAGAATGAAATT
* * *
36494815 GGGAAATTGAGGGAATGAAATT
1 GGGAAAATCAGAGAATGAAATT
36494837 GGG
1 GGG
36494840 GTAATCTGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.43, C:0.02, G:0.37, T:0.17
Consensus pattern (22 bp):
GGGAAAATCAGAGAATGAAATT
Found at i:36495215 original size:115 final size:115
Alignment explanation
Indices: 36495006--36495289 Score: 299
Period size: 115 Copynumber: 2.5 Consensus size: 115
36494996 CAAAAAATTG
* * * ** * *
36495006 CCACTAA-AATCAGATAAAAACGACAGCGTTTTGCACGGTCGTAAAACATTTTTGCGGCATTTTA
1 CCACTAATAGTCAGACAAAAACGACAACGTTTTGCACACTCGTAAAACATTTTTGCGCCATTTAA
** * *
36495070 TGAGAAAACGCCACTAAAGGATATCCTTTTGCGGCATTTTAGT-AAAAACG
66 TGAGAAAACAACACTAAAGGATATCCTTTTGCGGCATTTT-CTAAAAAACA
* * * *
36495120 CCACTATTAGGT-AGACAGAAACGACAACGTTTTGCACACTCTTAAAACATTTTTTGCGCCGTTT
1 CCACTAATA-GTCAGACAAAAACGACAACGTTTTGCACACTCGTAAAACA-TTTTTGCGCCATTT
* * **
36495184 AATGAGAAAACAACACTAAAGGCT-TCTTTTTGCGGTGTTTTCTAAAAAACA
64 AATGAGAAAACAACACTAAAGGATATCCTTTTGCGGCATTTTCTAAAAAACA
* * *
36495235 CCACTAATAGTCAGACAAAAACGACAACATTTTCCACACGT-GTAAAACATATTTG
1 CCACTAATAGTCAGACAAAAACGACAACGTTTTGCACAC-TCGTAAAACATTTTTG
36495290 TGGCGTTTTC
Statistics
Matches: 139, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
114 14 0.10
115 91 0.65
116 34 0.24
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (115 bp):
CCACTAATAGTCAGACAAAAACGACAACGTTTTGCACACTCGTAAAACATTTTTGCGCCATTTAA
TGAGAAAACAACACTAAAGGATATCCTTTTGCGGCATTTTCTAAAAAACA
Found at i:36495761 original size:7 final size:7
Alignment explanation
Indices: 36495751--36495952 Score: 61
Period size: 7 Copynumber: 27.7 Consensus size: 7
36495741 TTTTTTAGAT
36495751 TTTAGGG
1 TTTAGGG
36495758 TTTAGGG
1 TTTAGGG
*
36495765 TTTAAGAG
1 TTT-AGGG
36495773 TTTAGGG
1 TTTAGGG
*
36495780 TTTAGGA
1 TTTAGGG
*
36495787 TTTAGTG
1 TTTAGGG
** **
36495794 TCCATAG
1 TTTAGGG
*
36495801 CTTATGGG
1 TTTA-GGG
36495809 TTTAGGG
1 TTTAGGG
*
36495816 GTTAGGG
1 TTTAGGG
*
36495823 GTTAGGAG
1 TTTAGG-G
36495831 -TTAGGG
1 TTTAGGG
*
36495837 TTAATGGG
1 TTTA-GGG
*
36495845 -TTAGGA
1 TTTAGGG
36495851 TTTATGGG
1 TTTA-GGG
*
36495859 -TTATGG
1 TTTAGGG
* **
36495865 TCTATTG
1 TTTAGGG
*
36495872 TTTAGAGT
1 TTTAG-GG
36495880 TTTAAGGG
1 TTT-AGGG
*
36495888 TTTATGG
1 TTTAGGG
*
36495895 TTT-GAGA
1 TTTAG-GG
36495902 TTTAGGG
1 TTTAGGG
*
36495909 TTTAAAGG
1 TTT-AGGG
**
36495917 TTTAGTTA
1 TTTAG-GG
36495925 TTTAAGGG
1 TTT-AGGG
36495933 TTTAGTGG
1 TTTAG-GG
*
36495941 GTTAGGG
1 TTTAGGG
36495948 TTTAG
1 TTTAG
36495953 AGAAAGCCAT
Statistics
Matches: 139, Mismatches: 40, Indels: 32
0.66 0.19 0.15
Matches are distributed among these distances:
6 5 0.04
7 88 0.63
8 42 0.30
9 4 0.03
ACGTcount: A:0.21, C:0.02, G:0.35, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Found at i:36497246 original size:41 final size:41
Alignment explanation
Indices: 36497165--36497248 Score: 125
Period size: 41 Copynumber: 2.0 Consensus size: 41
36497155 CCTTCAAGTC
*
36497165 TGTTCACACTTCTTCTGTTCTTCACATTGTGCTTTGGATTT
1 TGTTCACACTTCTTCTGTTCTTCACATTGCGCTTTGGATTT
* *
36497206 TGTTCACACTTCTTCTGTTCTTCGCGTTGCGC-TTGTGATTT
1 TGTTCACACTTCTTCTGTTCTTCACATTGCGCTTTG-GATTT
36497247 TG
1 TG
36497249 ATATTCTTCG
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
40 3 0.08
41 36 0.92
ACGTcount: A:0.10, C:0.23, G:0.18, T:0.50
Consensus pattern (41 bp):
TGTTCACACTTCTTCTGTTCTTCACATTGCGCTTTGGATTT
Found at i:36499457 original size:25 final size:25
Alignment explanation
Indices: 36499428--36499481 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 25
36499418 GTTTGCAAAG
36499428 AATAAATA-AAA-AAAATATTTAAGAC
1 AATAAATAGAAAGAAAAT-TTT-AGAC
36499453 AATAAATAGTAAAGAAAATTTTAGAC
1 AATAAATAG-AAAGAAAATTTTAGAC
36499479 AAT
1 AAT
36499482 GGTTAATATG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 8 0.31
26 7 0.27
27 6 0.23
28 5 0.19
ACGTcount: A:0.63, C:0.04, G:0.07, T:0.26
Consensus pattern (25 bp):
AATAAATAGAAAGAAAATTTTAGAC
Found at i:36499717 original size:26 final size:25
Alignment explanation
Indices: 36499674--36499731 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
36499664 AATAAATAGT
36499674 TAATAATAAAATGATATAAAATA-A
1 TAATAATAAAATGATATAAAATATA
*
36499698 TAAATAATAAAAATGATATAATATATA
1 T-AATAAT-AAAATGATATAAAATATA
36499725 TAATAAT
1 TAATAAT
36499732 TTACATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 1 0.03
25 6 0.20
26 21 0.70
27 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (25 bp):
TAATAATAAAATGATATAAAATATA
Found at i:36499759 original size:15 final size:16
Alignment explanation
Indices: 36499664--36499783 Score: 52
Period size: 16 Copynumber: 7.2 Consensus size: 16
36499654 AATTATACAT
36499664 AATAAATAGT-TAATAA
1 AATAAATA-TATAATAA
*
36499680 TA-AAATGATATAA-AA
1 AATAAAT-ATATAATAA
*
36499695 TAATAAATA-ATAAAAA
1 -AATAAATATATAATAA
36499711 TGATATAATATATATAATAA
1 --A-ATAA-ATATATAATAA
**
36499731 TTTACATATATATAATAA
1 AATA-A-ATATATAATAA
* *
36499749 AATGAAT-TATAAAGAA
1 AATAAATATAT-AATAA
*
36499765 AAAAAATATATAATAA
1 AATAAATATATAATAA
36499781 AAT
1 AAT
36499784 TTATAAGAAA
Statistics
Matches: 78, Mismatches: 14, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
15 14 0.18
16 26 0.33
17 11 0.14
18 18 0.23
19 3 0.04
20 6 0.08
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (16 bp):
AATAAATATATAATAA
Found at i:36501893 original size:21 final size:21
Alignment explanation
Indices: 36501847--36501888 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 21
36501837 CAATTCATTA
36501847 TTATTAAACTTCTCTTTTGAG
1 TTATTAAACTTCTCTTTTGAG
36501868 TTATTAAA-TTCTC-TTTGAG
1 TTATTAAACTTCTCTTTTGAG
36501887 TT
1 TT
36501889 TTATTTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 8 0.38
20 5 0.24
21 8 0.38
ACGTcount: A:0.24, C:0.12, G:0.10, T:0.55
Consensus pattern (21 bp):
TTATTAAACTTCTCTTTTGAG
Found at i:36504188 original size:192 final size:192
Alignment explanation
Indices: 36503895--36504451 Score: 751
Period size: 192 Copynumber: 2.9 Consensus size: 192
36503885 GTCAAGCCTA
* * * * * *
36503895 ATGCCATGTCCCAGACATGGTCTTACGCTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCTGATGCCATGTCCCAGACA
* * * * * * ** ** *
36503960 TGGTCTTACACTAGCTCACATGT-CGA-AGCCGATGCCATGTCCCAGACATCATTTTACACTAGC
66 TGGTCTTACACTGGCTCTCAT-TAC-ATTGTCGATGCCATGTTCCAAACATGGTCATACACTGGC
* * *
36504023 TCTCGTCTCAAT-GTTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCG
129 TCTCATATC-ATGGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCG
* *
36504087 ATTCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCTGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCTGATGCCATGTCCCAGACA
*
36504152 TGGTCTTACACTGGCTCTCATTACATTGTCGATGCCATGTTCCAAACATGGTCATACATTGGCTC
66 TGGTCTTACACTGGCTCTCATTACATTGTCGATGCCATGTTCCAAACATGGTCATACACTGGCTC
* *
36504217 TCATATTATGGCTGATGCCATGTCCCAGACATGGTCATACACTGGCTCTCATAATGTGGTCG
131 TCATATCATGGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCG
* * * * *
36504279 ATGCCATGTCTCAGACTTGGTCTAACACTAGCACACATATCAATGTTGATGCCATGTCTCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCTGATGCCATGTCCCAGACA
* *
36504344 TGGTCTTACACTGGCTCTCATTACATTGTCAATGCCTTGTTCCAAACATGGTCATACACTGGCTC
66 TGGTCTTACACTGGCTCTCATTACATTGTCGATGCCATGTTCCAAACATGGTCATACACTGGCTC
* * *
36504409 TAATATCGTGGCCGATGCCATGTCCCAGACATGGTCTTACACT
131 TCATATCATGGCTGATGCCATGTCCCAGACATGGTCTTACACT
36504452 AGCGCACATA
Statistics
Matches: 323, Mismatches: 39, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
191 4 0.01
192 319 0.99
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (192 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCTGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTCATTACATTGTCGATGCCATGTTCCAAACATGGTCATACACTGGCTC
TCATATCATGGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCG
Found at i:36504463 original size:48 final size:47
Alignment explanation
Indices: 36503850--36504465 Score: 524
Period size: 48 Copynumber: 12.9 Consensus size: 47
36503840 ATTACGGATA
* * * * * * *
36503850 CCATGTTCCAAACATGGTCTTACACTGGCTCACA-AGTCAAGCCTAATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-TCATGTC-GATG
* * * *
36503898 CCATGTCCCAGACATGGTCTTACGCTAGCTCTCGTCTCAATGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGTCGATG
* * * *
36503946 CCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAAGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGTCGATG
** * * * *
36503994 CCATGTCCCAGACATCATTTTACACTAGCTCTCGTCTCAATGTTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGTCGATG
* * *
36504042 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTCGATT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCAT-GTCGATG
* *
36504090 CCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATG-CTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGTC-GATG
*
36504138 CCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TACATTGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-CA-TGTCGATG
* * * * * * *
36504186 CCATGTTCCAAACATGGTCATACATTGGCTCTCATATTATGGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGTC-GATG
* * *
36504234 CCATGTCCCAGACATGGTCATACACTGGCTCTCATAAT-GTGGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCAT-GTCGATG
* * * * * *
36504282 CCATGTCTCAGACTTGGTCTAACACTAGCACACATATCAATGTTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGTCGATG
* * *
36504330 CCATGTCTCAGACATGGTCTTACACTGGCTCTCAT-TACATTGTCAATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-CA-TGTCGATG
* * * * * * * *
36504378 CCTTGTTCCAAACATGGTCATACACTGGCTCTAATATCGTGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAT-GTCGATG
* *
36504426 CCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAT
36504466 CCAAATGTCA
Statistics
Matches: 461, Mismatches: 87, Indels: 40
0.78 0.15 0.07
Matches are distributed among these distances:
47 14 0.03
48 433 0.94
49 14 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGTCGATG
Found at i:36522153 original size:48 final size:48
Alignment explanation
Indices: 36522097--36522460 Score: 317
Period size: 48 Copynumber: 7.6 Consensus size: 48
36522087 TGAATTACCA
* * ** *
36522097 ATGCCATGTTCCAAACATGGTCTTACACTGGCTAACATGTCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCTG
* * * * * * *
36522145 ATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCTG
* * * *
36522193 ATGCCATGTCGCAGACACGGTCTTACACTGGCTCACATGTCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCTG
* * * * * * * * *
36522241 ATGCCATGTCCCGGACATTGTGTTACACTAGCTCTCGTCTCAATGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCTG
* * * * *
36522289 ATGGCATGTCCTAGACATAGTCTTACATTGGCTCTCATAAT--ATGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGA-GGCTG
*
36522337 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TAC-ATTG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-CGA-GGCT-G
* * * *
36522385 ATGCCATGTTCCAAACATGGT-TTACACTGGCTCTCATATCGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCTG
*
36522432 ATGTCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
36522461 AGCGTACATA
Statistics
Matches: 248, Mismatches: 59, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
46 1 0.00
47 38 0.15
48 208 0.84
49 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCTG
Found at i:36522271 original size:96 final size:96
Alignment explanation
Indices: 36522097--36522463 Score: 431
Period size: 96 Copynumber: 3.8 Consensus size: 96
36522087 TGAATTACCA
* * *
36522097 ATGCCATGTTCCAAACATGGTCTTACACTGGCTAACATGTCGAGGCTGATGCCATGTCCCAGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGACA
* *
36522162 TGGTCTTATACTAGCTCTCGTCTCAATGCCG
66 TGGTCTTACACTAGCTCTCGTCTCAATGTCG
* * * * *
36522193 ATGCCATG-TCGCAGACACGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCGGAC
1 ATGCCATGTTC-CAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGAC
* * *
36522257 ATTGTGTTACACTAGCTCTCGTCTCAATGTTG
65 ATGGTCTTACACTAGCTCTCGTCTCAATGTCG
* * * * *
36522289 ATGGCATG-TCCTAGACATAGTCTTACATTGGCTCTCATAAT--ATGGCCGATGCCATGTCCCAG
1 ATGCCATGTTCC-AAACATGGTCTTACACTGGCTCACAT-ATCGA-GGCCGATGCCATGTCCCAG
* * *
36522351 ACATGGTCTTACACTGGCTCTCAT-TACATTGTCG
63 ACATGGTCTTACACTAGCTCTCGTCT-CAATGTCG
* * *
36522385 ATGCCATGTTCCAAACATGGT-TTACACTGGCTCTCATATCGTGGCCGATGTCATGTCCCAGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGACA
36522449 TGGTCTTACACTAGC
66 TGGTCTTACACTAGC
36522464 GTACATATTA
Statistics
Matches: 233, Mismatches: 30, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
94 2 0.01
95 55 0.24
96 172 0.74
97 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (96 bp):
ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCTCTCGTCTCAATGTCG
Found at i:36525831 original size:22 final size:22
Alignment explanation
Indices: 36525803--36525848 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
36525793 TCAAGTCAAG
36525803 GGCTCAATGATTTGCCTAACAT
1 GGCTCAATGATTTGCCTAACAT
36525825 GGCTCAATGATTTGCCTAACAT
1 GGCTCAATGATTTGCCTAACAT
36525847 GG
1 GG
36525849 AGTGGGTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (22 bp):
GGCTCAATGATTTGCCTAACAT
Found at i:36543079 original size:5 final size:5
Alignment explanation
Indices: 36543069--36543093 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
36543059 TATTATATGC
36543069 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
36543094 GGTAAGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:36544788 original size:20 final size:21
Alignment explanation
Indices: 36544763--36544811 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
36544753 GTTTTCTAGT
36544763 TGTTTTAG-ATTATTTTGTTA
1 TGTTTTAGTATTATTTTGTTA
*
36544783 TGTTTTTCGTTATTATTTTGTTA
1 TG-TTTTAG-TATTATTTTGTTA
36544806 TGTTTT
1 TGTTTT
36544812 TCATTTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 2 0.08
21 5 0.20
22 4 0.16
23 14 0.56
ACGTcount: A:0.14, C:0.02, G:0.14, T:0.69
Consensus pattern (21 bp):
TGTTTTAGTATTATTTTGTTA
Found at i:36544812 original size:11 final size:11
Alignment explanation
Indices: 36544775--36544812 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
36544765 TTTTAGATTA
36544775 TTTTGTTATGT
1 TTTTGTTATGT
36544786 TTTTCGTTAT-T
1 TTTT-GTTATGT
36544797 ATTTTGTTATGT
1 -TTTTGTTATGT
36544809 TTTT
1 TTTT
36544813 CATTTTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.11, C:0.03, G:0.13, T:0.74
Consensus pattern (11 bp):
TTTTGTTATGT
Found at i:36551996 original size:21 final size:18
Alignment explanation
Indices: 36551956--36551993 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
36551946 GTTTATTTGA
36551956 TGAAATGAAGATGATGGG
1 TGAAATGAAGATGATGGG
36551974 TGAAATGAAGATGATGGG
1 TGAAATGAAGATGATGGG
36551992 TG
1 TG
36551994 GTGGTGAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.39, T:0.24
Consensus pattern (18 bp):
TGAAATGAAGATGATGGG
Found at i:36554269 original size:14 final size:16
Alignment explanation
Indices: 36554236--36554276 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
36554226 TCATAATATG
*
36554236 AAAATATTTTATATTA
1 AAAATATATTATATTA
36554252 AAAATATATT-TA-TA
1 AAAATATATTATATTA
*
36554266 AAAATTTATTA
1 AAAATATATTA
36554277 GTTTTATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 11 0.50
15 2 0.09
16 9 0.41
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
AAAATATATTATATTA
Found at i:36562432 original size:39 final size:39
Alignment explanation
Indices: 36562370--36562493 Score: 167
Period size: 39 Copynumber: 3.2 Consensus size: 39
36562360 ATTTAATGTG
*
36562370 TATCCGGACATAGGGTCCACAGGCTATGTGCTGGATTTA
1 TATCCGGACTTAGGGTCCACAGGCTATGTGCTGGATTTA
* ** *
36562409 TATTCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCACAGGCTATGTGCTGGATTTA
* * *
36562448 TATCCGGACTTAAGGTCCACAGGCTACGTGCTGGATATA
1 TATCCGGACTTAGGGTCCACAGGCTATGTGCTGGATTTA
*
36562487 TGTCCGG
1 TATCCGG
36562494 GCTAAAGTTC
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCACAGGCTATGTGCTGGATTTA
Found at i:36562510 original size:39 final size:39
Alignment explanation
Indices: 36562370--36562531 Score: 132
Period size: 39 Copynumber: 4.2 Consensus size: 39
36562360 ATTTAATGTG
* * * *
36562370 TATCCGGAC-ATAGGGTCCACAGGCTATGTGCTGGATTTA
1 TATCCGGACTA-AAGGTCCGCAGGCTACGTGCTGGAATTA
* * * * *
36562409 TATTCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTAAAGGTCCGCAGGCTACGTGCTGGAATTA
* *
36562448 TATCCGGACTTAAGGTCCACAGGCTACGTGCTGG-ATATA
1 TATCCGGACTAAAGGTCCGCAGGCTACGTGCTGGAAT-TA
* * * * * *
36562487 TGTCCGGGCTAAAGTTCCGCAGGCTTCGAGCTGGTATTA
1 TATCCGGACTAAAGGTCCGCAGGCTACGTGCTGGAATTA
36562526 TA-CCGG
1 TATCCGG
36562532 GTTTAAATTC
Statistics
Matches: 102, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
38 6 0.06
39 94 0.92
40 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
TATCCGGACTAAAGGTCCGCAGGCTACGTGCTGGAATTA
Found at i:36562520 original size:78 final size:78
Alignment explanation
Indices: 36562370--36562531 Score: 184
Period size: 78 Copynumber: 2.1 Consensus size: 78
36562360 ATTTAATGTG
* * * * * * *
36562370 TATCCGGACATAGGGTCCACAGGCTATGTGCTGGATTTATATTCGGACTTAGGGTCTGCAGGCTA
1 TATCCGGACATAAGGTCCACAGGCTACGTGCTGGATATATATCCGGACTAAAGGTCCGCAGGCTA
*
36562435 TGTGCTGGAATTA
66 TGAGCTGGAATTA
* * * *
36562448 TATCCGGACTTAAGGTCCACAGGCTACGTGCTGGATATATGTCCGGGCTAAAGTTCCGCAGGCT-
1 TATCCGGACATAAGGTCCACAGGCTACGTGCTGGATATATATCCGGACTAAAGGTCCGCAGGCTA
*
36562512 TCGAGCTGGTATTA
66 T-GAGCTGGAATTA
36562526 TA-CCGG
1 TATCCGG
36562532 GTTTAAATTC
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
77 5 0.07
78 65 0.93
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (78 bp):
TATCCGGACATAAGGTCCACAGGCTACGTGCTGGATATATATCCGGACTAAAGGTCCGCAGGCTA
TGAGCTGGAATTA
Found at i:36569591 original size:39 final size:39
Alignment explanation
Indices: 36569504--36569611 Score: 99
Period size: 39 Copynumber: 2.8 Consensus size: 39
36569494 CCGGACTTAG
* * * *
36569504 GGTCCGCAGGCTATGTGCTGGAATTATATCCATACTTAA
1 GGTCCGCAGGCTACGTGCTGGAAATATATCCAGACTAAA
* * * *
36569543 GGTCTGCAGGCTACGTGCTGGAAATATGTCCGGGCTAAA
1 GGTCCGCAGGCTACGTGCTGGAAATATATCCAGACTAAA
* * * * *
36569582 GTTCCGCAGGCTTCGAGCTGGTATTATATC
1 GGTCCGCAGGCTACGTGCTGGAAATATATC
36569612 GGGTTTAAAT
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
GGTCCGCAGGCTACGTGCTGGAAATATATCCAGACTAAA
Found at i:36578554 original size:53 final size:53
Alignment explanation
Indices: 36578372--36578578 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
36578362 ATTAGGGTTT
* * * **
36578372 AAGGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTTCAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCAT-AAGGC
* * * * * * * * *
36578426 ATGGAAATCATGGAAGACCATGCCAAGAG-ATGGCATTGATAAACTACGATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAG-GCATGGCAATGGT-AAGTTC-ATAAGGC
* * *
36578481 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
* * *
36578534 AAGGATACCATGTAAGACCATGTCAAGACATGGTAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTT
36578579 TAAAAGGGAA
Statistics
Matches: 119, Mismatches: 30, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
53 45 0.38
54 35 0.29
55 38 0.32
56 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
Found at i:36580976 original size:39 final size:40
Alignment explanation
Indices: 36580908--36580988 Score: 155
Period size: 39 Copynumber: 2.0 Consensus size: 40
36580898 AATGTGAATG
36580908 TCCATATTCTAATCCCCCCTCATTTATGAGGTAAAACCTC
1 TCCATATTCTAATCCCCCCTCATTTATGAGGTAAAACCTC
36580948 TCCATATTCTAAT-CCCCCTCATTTATGAGGTAAAACCTC
1 TCCATATTCTAATCCCCCCTCATTTATGAGGTAAAACCTC
36580987 TC
1 TC
36580989 ATTCATTATG
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 28 0.68
40 13 0.32
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.33
Consensus pattern (40 bp):
TCCATATTCTAATCCCCCCTCATTTATGAGGTAAAACCTC
Found at i:36601362 original size:42 final size:42
Alignment explanation
Indices: 36601316--36601411 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
36601306 CGACCAAACT
36601316 ACACGCCCATGTACTCAGC-CGTGTGTCACACACAGTCTAGAC
1 ACACGCCCATGT-CTCAGCTCGTGTGTCACACACAGTCTAGAC
* * * * *
36601358 ACACGCCCTTGTGTCTGCTTGTGTGTCACACACGGTCTAGAC
1 ACACGCCCATGTCTCAGCTCGTGTGTCACACACAGTCTAGAC
*
36601400 ACACGCCTATGT
1 ACACGCCCATGT
36601412 GCCTGCCCAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
41 4 0.09
42 42 0.91
ACGTcount: A:0.22, C:0.33, G:0.21, T:0.24
Consensus pattern (42 bp):
ACACGCCCATGTCTCAGCTCGTGTGTCACACACAGTCTAGAC
Found at i:36607191 original size:40 final size:40
Alignment explanation
Indices: 36607136--36607360 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
36607126 TATTCGGATG
*
36607136 ATATCCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
36607176 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
36607219 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
36607259 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
36607299 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
36607339 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
36607361 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 14 0.09
40 110 0.68
41 1 0.01
43 37 0.23
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:36607279 original size:83 final size:80
Alignment explanation
Indices: 36607140--36607360 Score: 277
Period size: 83 Copynumber: 2.7 Consensus size: 80
36607130 CGGATGATAT
* * * *
36607140 CCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
*
36607205 TGCGAGTAGTTGCTATAC
66 TGC--G-AGTTACTATAC
* *
36607223 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
*
36607288 TGCGAGTTACTATAT
66 TGCGAGTTACTATAC
* * *
36607303 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTG-CGATATCC-GGCTAA-ATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGA-CCCGAAGG
36607361 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 14 0.11
80 44 0.35
81 3 0.02
83 62 0.50
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
TGCGAGTTACTATAC
Found at i:36614924 original size:14 final size:14
Alignment explanation
Indices: 36614898--36614943 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
36614888 CCTACAACAA
36614898 CAAG-AAAACATATT
1 CAAGCAAAA-ATATT
36614912 CAAGCAAAAATATT
1 CAAGCAAAAATATT
* *
36614926 CAAACAAACATATT
1 CAAGCAAAAATATT
36614940 CAAG
1 CAAG
36614944 ATCGTTGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 24 0.86
15 4 0.14
ACGTcount: A:0.57, C:0.17, G:0.07, T:0.20
Consensus pattern (14 bp):
CAAGCAAAAATATT
Found at i:36626836 original size:43 final size:43
Alignment explanation
Indices: 36626733--36626847 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
36626723 AGAGCTATTA
*
36626733 AGATTACATGTAAGACCATATCTGGGATA-TGGCATCGATATG
1 AGATTACATGTAAGACCATATCTGGGATATTGGCATCGATACG
* * * * *
36626775 AGGCTT-CGTGTAAAACCATAGCTGGGATATTGGCATTGATACG
1 A-GATTACATGTAAGACCATATCTGGGATATTGGCATCGATACG
*
36626818 AGATTACATATAAGACCATATCTGGGATAT
1 AGATTACATGTAAGACCATATCTGGGATAT
36626848 GGAACTAGTA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
42 24 0.41
43 35 0.59
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (43 bp):
AGATTACATGTAAGACCATATCTGGGATATTGGCATCGATACG
Found at i:36629796 original size:14 final size:15
Alignment explanation
Indices: 36629761--36629797 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
36629751 AAATATGACC
36629761 CATTCATTCCCTCATT
1 CATTCA-TCCCTCATT
36629777 CA-TCATCCCTCA-T
1 CATTCATCCCTCATT
36629790 CATTCATC
1 CATTCATC
36629798 ATTCTCTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 3 0.15
14 12 0.60
15 3 0.15
16 2 0.10
ACGTcount: A:0.22, C:0.41, G:0.00, T:0.38
Consensus pattern (15 bp):
CATTCATCCCTCATT
Found at i:36656055 original size:22 final size:22
Alignment explanation
Indices: 36656030--36656072 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
36656020 ATAAGCTCAT
*
36656030 TTACATTCAATTAATAAATGTA
1 TTACATTCAATCAATAAATGTA
36656052 TTACATTCAATCAATAAATGT
1 TTACATTCAATCAATAAATGT
36656073 GAATTAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.40
Consensus pattern (22 bp):
TTACATTCAATCAATAAATGTA
Found at i:36659968 original size:39 final size:41
Alignment explanation
Indices: 36659873--36659975 Score: 110
Period size: 39 Copynumber: 2.6 Consensus size: 41
36659863 TTGAATGATG
* *
36659873 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAAGTGACAATA
* *
36659912 TCCGGACTAAGATCCGAAGGCATTTGTGCG-AGAT-ACTAAT-
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAAG-TGAC-AATA
36659952 TCCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGACCCGAAGGCATTT
36659976 CCGGGCTAAG
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
39 30 0.56
40 14 0.26
41 10 0.19
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (41 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAAGTGACAATA
Found at i:36659981 original size:23 final size:23
Alignment explanation
Indices: 36659951--36659998 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
36659941 GAGATACTAA
36659951 TTCCGGGCTAAGCCCGAAGGCAT
1 TTCCGGGCTAAGCCCGAAGGCAT
36659974 TTCCGGGCTAAGCCCGAAGGCAT
1 TTCCGGGCTAAGCCCGAAGGCAT
36659997 TT
1 TT
36659999 GTGCGAGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (23 bp):
TTCCGGGCTAAGCCCGAAGGCAT
Found at i:36660031 original size:40 final size:41
Alignment explanation
Indices: 36659975--36660084 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 41
36659965 CGAAGGCATT
* *
36659975 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAATTACTATAA
*
36660014 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAATTACTATAA
* *
36660055 -CCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGA
36660085 GGAGCTATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 10 0.16
40 51 0.81
41 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAATTACTATAA
Found at i:36660051 original size:102 final size:103
Alignment explanation
Indices: 36659873--36660078 Score: 246
Period size: 102 Copynumber: 2.0 Consensus size: 103
36659863 TTGAATGATG
36659873 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
* *
36659938 TGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
66 TACGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATT
* * **
36659975 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
*
36660036 TTTGTACGA-ATTACTATAACCGGGCTATGTCCCGAAGGCATT
62 TTTGTACGAGA-TACTATAACCGGGCTAAGTCCCGAAGGCATT
36660078 T
1 T
36660079 GAACGAGGAG
Statistics
Matches: 90, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
101 11 0.12
102 57 0.63
103 22 0.24
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (103 bp):
TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
TACGAGATACTATAACCGGGCTAAGTCCCGAAGGCATT
Found at i:36667935 original size:21 final size:21
Alignment explanation
Indices: 36667909--36667950 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
36667899 ATACTAATTC
36667909 CGGGCTAAGCCGAAGGCATTT
1 CGGGCTAAGCCGAAGGCATTT
36667930 CGGGCTAAGCCGAAGGCATTT
1 CGGGCTAAGCCGAAGGCATTT
36667951 GTGCGAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.33, T:0.19
Consensus pattern (21 bp):
CGGGCTAAGCCGAAGGCATTT
Found at i:36668041 original size:40 final size:40
Alignment explanation
Indices: 36667930--36668075 Score: 176
Period size: 40 Copynumber: 3.7 Consensus size: 40
36667920 GAAGGCATTT
* *
36667930 CGGGCTAAG--CCGAAGGCATTTGTGCGAGA-TACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTACGA-ATTACTAAATC
* *
36667968 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAATTACTAAATC
*
36668007 CGGGTTAAGTCCCGAAGGCATTTGTACGAATTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAATTACTA-AATC
* *
36668047 CGGGCTATGTCCCGAAGGCATTTGAACGA
1 CGGGCTAAGTCCCGAAGGCATTTGTACGA
36668076 GGAGCTATAT
Statistics
Matches: 96, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
38 9 0.09
39 34 0.35
40 51 0.53
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTACGAATTACTAAATC
Found at i:36668092 original size:79 final size:79
Alignment explanation
Indices: 36667939--36668103 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
36667929 TCGGGCTAAG
* * ** *
36667939 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
36668004 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
36668018 CCGAAGGCATTTGTACGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTACGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
36668080 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
36668097 CCGAAGG
1 CCGAAGG
36668104 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:36671073 original size:43 final size:43
Alignment explanation
Indices: 36671020--36671159 Score: 190
Period size: 43 Copynumber: 3.3 Consensus size: 43
36671010 TTATTTTAAA
*
36671020 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTTTCGC
1 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTTTCAC
* * * ** *
36671063 AAACGTCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCCAA
1 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTTTCAC
* *
36671106 AAACGCCGCTAAAGACCATGACTTTTAGCGGCACCTTTTTCAC
1 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTTTCAC
*
36671149 AAATGCCGCTA
1 AAACGCCGCTA
36671160 TAAAACAGAC
Statistics
Matches: 81, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 81 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTTTCAC
Found at i:36671199 original size:42 final size:41
Alignment explanation
Indices: 36671019--36671205 Score: 137
Period size: 43 Copynumber: 4.4 Consensus size: 41
36671009 ATTATTTTAA
* * * * *
36671019 AAAACGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTTTCGC
1 AAAACGCCGCTAAA-AACATGACCTTTAGCGACAC--TTTTCAC
* * * *
36671063 -AAACGTCGCTAAAGACCATGACCTTTAGCGACGCTTTTCCC
1 AAAACGCCGCTAAA-AACATGACCTTTAGCGACACTTTTCAC
* * *
36671104 AAAAACGCCGCTAAAGACCATGACTTTTAGCGGCACCTTTTTCAC
1 -AAAACGCCGCTAAA-AACATGACCTTTAGCGACA-C-TTTTCAC
* *
36671149 -AAATGCCGCTATAAAACA-GACCTTTAGCGACACTTATCAC
1 AAAACGCCGCTA-AAAACATGACCTTTAGCGACACTTTTCAC
36671189 ATAAACGCCGCTAAAAA
1 A-AAACGCCGCTAAAAA
36671206 ATATAACTTT
Statistics
Matches: 121, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
40 6 0.05
41 11 0.09
42 22 0.18
43 73 0.60
44 3 0.02
45 6 0.05
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACATGACCTTTAGCGACACTTTTCAC
Found at i:36672607 original size:22 final size:23
Alignment explanation
Indices: 36672562--36672631 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 23
36672552 AACTTGAATG
* *
36672562 TATATTTGAAATGTTTATAATATA
1 TATATTTAAAATATTT-TAATATA
* *
36672586 TTTTTTTAAAAT-TTTTAATATA
1 TATATTTAAAATATTTTAATATA
36672608 TATATTTAAATATTATTTTAATAT
1 TATATTTAAA-A-TATTTTAATAT
36672632 TAAATAAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
22 15 0.39
23 4 0.11
24 10 0.26
25 9 0.24
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (23 bp):
TATATTTAAAATATTTTAATATA
Found at i:36672928 original size:15 final size:16
Alignment explanation
Indices: 36672910--36672948 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
36672900 AAAATCATAA
36672910 TTAAATTTATATTT-T
1 TTAAATTTATATTTAT
*
36672925 TTAAA-ATATATTTAT
1 TTAAATTTATATTTAT
36672940 TTAAATTTA
1 TTAAATTTA
36672949 AATTACATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 7 0.35
15 11 0.55
16 2 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTAAATTTATATTTAT
Found at i:36673031 original size:19 final size:20
Alignment explanation
Indices: 36672976--36673031 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
36672966 AATCTTTTAT
* *
36672976 ATTATTAAAAATATATGTAAT
1 ATTA-TAAAAATATATTTAAA
36672997 ATT-TAAAAATATATTTAAA
1 ATTATAAAAATATATTTAAA
36673016 ATTATAAAAATA-ATTT
1 ATTATAAAAATATATTT
36673032 TGAATATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 21 0.66
20 8 0.25
21 3 0.09
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTATAAAAATATATTTAAA
Found at i:36689924 original size:49 final size:49
Alignment explanation
Indices: 36689847--36689974 Score: 141
Period size: 49 Copynumber: 2.6 Consensus size: 49
36689837 ACATCAAAGT
* * * *
36689847 CGATGCCATGTCCCAGATAGCTCCTACACTAACCT-TCATATATCGAGGC
1 CGATGCTATGTCCCAGACAGGTCTTACACT-ACCTCTCATATATCGAGGC
** * * *
36689896 CGATGCTATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGATGT
1 CGATGCTATGTCCCAGACAGGTCTTACACTACCTCTCATATATCGAGGC
* *
36689945 CGATACTATGTCTCAGACAGGTCTTACACT
1 CGATGCTATGTCCCAGACAGGTCTTACACT
36689975 GGCACACAAC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
48 2 0.03
49 65 0.97
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (49 bp):
CGATGCTATGTCCCAGACAGGTCTTACACTACCTCTCATATATCGAGGC
Found at i:36689974 original size:98 final size:97
Alignment explanation
Indices: 36689799--36689974 Score: 219
Period size: 98 Copynumber: 1.8 Consensus size: 97
36689789 GATAAGATGT
*
36689799 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTAACACATCAAAGTCGATGCCATGTCCCAGA
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTAACACATCAAAGTCGATACCATGTCCCAGA
*
36689864 TAGCTCCTACACTAACCTTCATATATCGAGGC
66 CAGCTCCTACACTAACCTTCATATATCGAGGC
* * ** * * * *
36689896 CGATGCTATGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATCGATGTCGATACTATGTCTCA
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTAACA-C-ATCAAAGTCGATACCATGTCCCA
* *
36689960 GACAGGTCTTACACT
64 GACAGCTCCTACACT
36689975 GGCACACAAC
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
96 17 0.26
97 18 0.28
98 30 0.46
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (97 bp):
CGATGCCATGTCCAAGACATGGTCTTACACTGGCTAACACATCAAAGTCGATACCATGTCCCAGA
CAGCTCCTACACTAACCTTCATATATCGAGGC
Found at i:36689975 original size:49 final size:49
Alignment explanation
Indices: 36689882--36689977 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 49
36689872 ACACTAACCT
*
36689882 TCATATATCGAGGCCGATGCTATGTCCCAGACAGGTCTTACACTGGCTC
1 TCATATATCGAGGCCGATACTATGTCCCAGACAGGTCTTACACTGGCTC
* * * *
36689931 TCATCTATCGATGTCGATACTATGTCTCAGACAGGTCTTACACTGGC
1 TCATATATCGAGGCCGATACTATGTCCCAGACAGGTCTTACACTGGC
36689978 ACACAACAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (49 bp):
TCATATATCGAGGCCGATACTATGTCCCAGACAGGTCTTACACTGGCTC
Found at i:36690106 original size:46 final size:48
Alignment explanation
Indices: 36689995--36690115 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 48
36689985 AAGCTAACGC
* * * *
36689995 CATGTCCCAGACATGTCTTACACTATCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCCGATG
* * * * *
36690043 CATGTCCCAAACCTGTCTTACACTAGC-TCT-CGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCCGATG
36690089 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
36690116 ACACATATCA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
46 36 0.58
47 2 0.03
48 24 0.39
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCCGATG
Found at i:36696638 original size:49 final size:48
Alignment explanation
Indices: 36696534--36696665 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 48
36696524 ACACATCAAA
* *
36696534 GTCGATGCCATGTCCCAGAAGGTCTTACACTGACTTTCATATATTGAG
1 GTCGATGCCATGTCCCAGAAGGTCTTACACTGACTCTCATATATCGAG
* * * *
36696582 GCCGATGCCATGTCCCAGATAGGTCTTATACTGGCTCTCATCTATCG-G
1 GTCGATGCCATGTCCCAGA-AGGTCTTACACTGACTCTCATATATCGAG
*
36696630 TGTCGATGCCATGTCCTAGACAGGTCTTACACTGAC
1 -GTCGATGCCATGTCCCAGA-AGGTCTTACACTGAC
36696666 ATACAACAAG
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
48 19 0.27
49 52 0.73
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.30
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGAAGGTCTTACACTGACTCTCATATATCGAG
Found at i:36700002 original size:47 final size:47
Alignment explanation
Indices: 36699944--36700244 Score: 467
Period size: 47 Copynumber: 6.4 Consensus size: 47
36699934 CAGCCAAGAC
36699944 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
36699991 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
36700038 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
36700085 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
36700132 AGTGTATATATGTGATAAGGCCTAGTAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * *
36700179 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
36700226 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
36700245 TCCCGAAGGG
Statistics
Matches: 234, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 234 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:36700438 original size:37 final size:37
Alignment explanation
Indices: 36700363--36700441 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
36700353 CCGAGCTCTA
* *
36700363 AAGACCCGATGACTACGTGTGGGAATTTTGCCCAGGT
1 AAGACCCGATAACTACGTGTGGGAATTATGCCCAGGT
* * *
36700400 AAGACCCGATAACTTCGTGT-GGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGA-ATTATGCCCAGGT
36700437 AAGAC
1 AAGAC
36700442 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 3 0.08
37 33 0.92
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGGAATTATGCCCAGGT
Found at i:36702355 original size:43 final size:43
Alignment explanation
Indices: 36702307--36702409 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
36702297 TTGGTTTTCA
36702307 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
36702350 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
36702393 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
36702410 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:36702426 original size:29 final size:29
Alignment explanation
Indices: 36702391--36702464 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
36702381 GTTGTGAGAT
* *
36702391 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
36702420 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
36702449 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36702465 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:36702900 original size:40 final size:40
Alignment explanation
Indices: 36702856--36702932 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
36702846 GAGTTACTAA
* *
36702856 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGTGATGT
* *
36702896 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGTGA
36702933 CGTGTATTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGTGATGT
Found at i:36706518 original size:47 final size:47
Alignment explanation
Indices: 36706460--36706760 Score: 485
Period size: 47 Copynumber: 6.4 Consensus size: 47
36706450 CAACCAAGAC
* *
36706460 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGCA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
36706507 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
36706554 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36706601 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
36706648 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * *
36706695 AGTGTATATATGTGACAGGGCCGAATGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
36706742 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
36706761 TCCCGAAGGG
Statistics
Matches: 236, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 236 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:36706954 original size:37 final size:37
Alignment explanation
Indices: 36706879--36706957 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
36706869 CCGAGCTCTA
* *
36706879 AAGACCCGATGACTACGTGTGGGAATTTTGCCCAGGT
1 AAGACCCGATAACTACGTGTGGGAATTATGCCCAGGT
* * *
36706916 AAGACCCGATAACTTCGTGT-GGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGA-ATTATGCCCAGGT
36706953 AAGAC
1 AAGAC
36706958 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 3 0.08
37 33 0.92
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGGAATTATGCCCAGGT
Found at i:36708772 original size:53 final size:53
Alignment explanation
Indices: 36708709--36708814 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
36708699 AAATAGAGGT
36708709 TCCAAAACCAATGTTCCGACTAGACCCAAAATCGAGCTGATACATTCTCAGCC
1 TCCAAAACCAATGTTCCGACTAGACCCAAAATCGAGCTGATACATTCTCAGCC
36708762 TCCAAAACCAATGTTCCGACTAGACCCAAAATCGAGCTGATACATTCTCAGCC
1 TCCAAAACCAATGTTCCGACTAGACCCAAAATCGAGCTGATACATTCTCAGCC
36708815 ACAAGAGCGG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.34, C:0.32, G:0.13, T:0.21
Consensus pattern (53 bp):
TCCAAAACCAATGTTCCGACTAGACCCAAAATCGAGCTGATACATTCTCAGCC
Found at i:36716673 original size:20 final size:21
Alignment explanation
Indices: 36716648--36716695 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
36716638 CAATTTGGTA
*
36716648 CGATACCATTGA-AAAACTAT
1 CGATACCATTGATAAAAATAT
* *
36716668 CGATA-CTTTTATAAAAATAT
1 CGATACCATTGATAAAAATAT
36716688 CGATACCA
1 CGATACCA
36716696 CAAGGAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 4 0.18
20 17 0.77
21 1 0.05
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (21 bp):
CGATACCATTGATAAAAATAT
Found at i:36718129 original size:27 final size:27
Alignment explanation
Indices: 36718099--36718239 Score: 128
Period size: 27 Copynumber: 5.2 Consensus size: 27
36718089 GTGACGAAGT
*
36718099 CACCAGATACAGTTATTGTGGTAGAGC
1 CACCAGATACAGTTATTGTGGCAGAGC
*
36718126 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGTTAT-TGTGGCAGAGC
* * * *
36718153 CACCAGAT-CAGATAATTGTGGTATATC
1 CACCAGATACAG-TTATTGTGGCAGAGC
* *
36718180 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGTTAT-TGTGGCAGAGC
* *
36718207 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAG-TTATTGTGGCAGAGC
36718234 CACCAG
1 CACCAG
36718240 GACGCTTCCT
Statistics
Matches: 90, Mismatches: 17, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
26 9 0.10
27 77 0.86
28 4 0.04
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGATACAGTTATTGTGGCAGAGC
Found at i:36718240 original size:54 final size:54
Alignment explanation
Indices: 36718099--36718242 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
36718089 GTGACGAAGT
* * *
36718099 CACCAGATACAG-TTATTGTGGTAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGTATAGCCACCAGGACAGATATATGTGGCAGAGC
*
36718153 CACCAGATCAGATAATTGTGGTATATCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGTATAGCCACCAGGACAGATATATGTGGCAGAGC
*
36718207 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGTATAGCCACCAGGAC
36718243 GCTTCCTCCA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 3 0.04
54 80 0.96
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGTATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:36719883 original size:26 final size:26
Alignment explanation
Indices: 36719852--36719959 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
36719842 TGAAATGCCC
36719852 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
36719878 ACCATGGAACCTTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
36719904 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
36719930 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
36719956 ATCA
1 ATCA
36719960 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:36721271 original size:21 final size:21
Alignment explanation
Indices: 36721238--36721278 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36721228 CCTATCCATT
*
36721238 GTTTAAGAAATGATGTTTGAG
1 GTTTAAGAAATGAGGTTTGAG
* *
36721259 GTTTTAGAGATGAGGTTTGA
1 GTTTAAGAAATGAGGTTTGA
36721279 TCTTATAAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (21 bp):
GTTTAAGAAATGAGGTTTGAG
Found at i:36722579 original size:19 final size:20
Alignment explanation
Indices: 36722542--36722581 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36722532 TCTTAAAGTA
36722542 AAAATGAATGTCAAATTTTG
1 AAAATGAATGTCAAATTTTG
* *
36722562 AAAATGTATGTCAATTTTTG
1 AAAATGAATGTCAAATTTTG
36722582 TTTTGGCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (20 bp):
AAAATGAATGTCAAATTTTG
Found at i:36722748 original size:22 final size:23
Alignment explanation
Indices: 36722697--36722741 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
36722687 AAGCTTTTTT
*
36722697 TGAAAATATATTTTGATATAAAAA
1 TGAAAA-AAATTTTGATATAAAAA
36722721 TGAAAAAAATTTTGA-ATAAAA
1 TGAAAAAAATTTTGATATAAAA
36722742 GTTAAAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 8 0.40
24 6 0.30
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (23 bp):
TGAAAAAAATTTTGATATAAAAA
Found at i:36725062 original size:95 final size:95
Alignment explanation
Indices: 36724799--36725077 Score: 348
Period size: 95 Copynumber: 2.9 Consensus size: 95
36724789 ACTAGTGGTG
* ** * * *
36724799 GATACCTTACGGATGGCTAAGATCCTGCA-ATTATTGTAAATTCCTCATAGCTCGTGTGAGCAGC
1 GATACCTTACGGATGGCTAAGATCCTACATA-TATTGTGGATTCTTCACAGCTCATGTGAGCAGC
* * * * *
36724863 ATCTTGTAACAATTAATGTCCCGATTTATTG
65 ATCGTGTAATAGTTAATGTCCCGATTTACTA
** * * *
36724894 GATACCTTACTAATGGCTAAGATCCTACATATATTGCGGATTCTTCACAACTCTTGTGAGCAGCA
1 GATACCTTACGGATGGCTAAGATCCTACATATATTGTGGATTCTTCACAGCTCATGTGAGCAGCA
**
36724959 TCGTGTAATAGTTAATGTCTTGATTTACTA
66 TCGTGTAATAGTTAATGTCCCGATTTACTA
36724989 GATACCTTATC-GATGGCTAAGATCCTACATATATTGTGGATTCTTCACAGCTCATGTGAGCAGC
1 GATACCTTA-CGGATGGCTAAGATCCTACATATATTGTGGATTCTTCACAGCTCATGTGAGCAGC
*
36725053 ATCGTGTAATGGTTAATGT-CCGATT
65 ATCGTGTAATAGTTAATGTCCCGATT
36725078 CACAGCTCAT
Statistics
Matches: 158, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
94 4 0.03
95 152 0.96
96 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (95 bp):
GATACCTTACGGATGGCTAAGATCCTACATATATTGTGGATTCTTCACAGCTCATGTGAGCAGCA
TCGTGTAATAGTTAATGTCCCGATTTACTA
Found at i:36729056 original size:28 final size:28
Alignment explanation
Indices: 36729024--36729088 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
36729014 ATTTACTAGA
*
36729024 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
36729052 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
36729080 ATACCCCTA
1 ATACCCCTA
36729089 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:36729267 original size:29 final size:28
Alignment explanation
Indices: 36729204--36729267 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
36729194 CTGGTGGTTA
* *
36729204 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
36729232 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
36729261 TGTCACA
1 TGCCACA
36729268 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:36729749 original size:18 final size:18
Alignment explanation
Indices: 36729710--36729750 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
36729700 TAATAAGGCC
* *
36729710 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
36729728 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
36729746 TTTTA
1 TTTTA
36729751 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:36733297 original size:46 final size:46
Alignment explanation
Indices: 36733230--36733401 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
36733220 AACCCGCCCC
* *
36733230 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
36733276 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
36733324 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
36733369 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
36733402 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 58 0.56
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:36733344 original size:93 final size:93
Alignment explanation
Indices: 36733235--36733405 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
36733225 GCCCCTAAGT
* * * *
36733235 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36733300 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
36733328 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36733393 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36733406 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36733859 original size:30 final size:30
Alignment explanation
Indices: 36733825--36733884 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
36733815 ATTTAATACG
36733825 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
36733855 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36733885 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36739685 original size:28 final size:28
Alignment explanation
Indices: 36739654--36739714 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
36739644 ATTAGAATAA
*
36739654 CCCTATGTATGCAAAATTACCATTATAC
1 CCCTATGTATGCAAAATGACCATTATAC
* *
36739682 CCCTATGTATGCTAAATGACCTTTATAC
1 CCCTATGTATGCAAAATGACCATTATAC
36739710 CCCTA
1 CCCTA
36739715 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (28 bp):
CCCTATGTATGCAAAATGACCATTATAC
Found at i:36739861 original size:28 final size:28
Alignment explanation
Indices: 36739820--36739910 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
36739810 AGGAAGCGTC
36739820 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
36739848 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
* * *
36739876 CTAGTGGCACTACCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
36739905 CTGGTG
1 CTGGTG
36739911 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
28 49 0.89
29 6 0.11
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:36740403 original size:18 final size:18
Alignment explanation
Indices: 36740364--36740404 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
36740354 TAATAAGGCC
* *
36740364 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
36740382 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
36740400 TTTTA
1 TTTTA
36740405 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:36742078 original size:19 final size:17
Alignment explanation
Indices: 36742023--36742072 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 17
36742013 TTATACTATA
36742023 AAATATTTATTATTAAT
1 AAATATTTATTATTAAT
*
36742040 --ATATTTATAATTGTAAT
1 AAATATTTATTA-T-TAAT
36742057 AAATATTTATTATTAA
1 AAATATTTATTATTAA
36742073 AATAAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
15 9 0.33
16 1 0.04
17 7 0.26
18 1 0.04
19 9 0.33
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
AAATATTTATTATTAAT
Found at i:36742246 original size:17 final size:19
Alignment explanation
Indices: 36742204--36742246 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
36742194 TATTTTATTT
36742204 TAATATTTTTAAAAATAAA
1 TAATATTTTTAAAAATAAA
* *
36742223 AAATATTTTT-AATAT-AA
1 TAATATTTTTAAAAATAAA
36742240 TAATATT
1 TAATATT
36742247 AAACTTGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 9 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATATTTTTAAAAATAAA
Found at i:36742808 original size:12 final size:12
Alignment explanation
Indices: 36742793--36742822 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
36742783 AAGATGAAAC
36742793 AATGAGTATAGT
1 AATGAGTATAGT
36742805 AATGAGTATAGT
1 AATGAGTATAGT
36742817 AATGAG
1 AATGAG
36742823 AGTAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.30
Consensus pattern (12 bp):
AATGAGTATAGT
Found at i:36748005 original size:48 final size:48
Alignment explanation
Indices: 36747935--36748160 Score: 281
Period size: 48 Copynumber: 4.7 Consensus size: 48
36747925 TGTGAGCTGA
* * **
36747935 TGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGAGAGCTAG
* * * * *
36747983 TGTAAGACCATGTCTGGGACATGGCATTGGCCTCGGTATGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGAGAGCTAG
* * ** *
36748031 TGTAAGACCATGTTTGGAACATGGCATCGACATTTATATAAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGAGAGCTAG
* * * * *
36748079 TGTAAGACCATGTCTAGGACATGGCATCGACCTCGACATGTGGGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGAGAGCTAG
36748127 TGTAAGACCATGTCTGGGACATGGCATCGACATC
1 TGTAAGACCATGTCTGGGACATGGCATCGACATC
36748161 TTACCCTTTT
Statistics
Matches: 147, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 147 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGAGAGCTAG
Found at i:36748087 original size:96 final size:96
Alignment explanation
Indices: 36747923--36748159 Score: 377
Period size: 96 Copynumber: 2.5 Consensus size: 96
36747913 TTACTAGGGT
*
36747923 TATGTGAGCT-GATGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAGTGTA
1 TATGTGAGCTAG-TGTAAGACCATGTTTGGAACATGGCATCGACATTTATATAAGAGCTAGTGTA
* * * *
36747987 AGACCATGTCTGGGACATGGCATTGGCCTCGG
65 AGACCATGTCTAGGACATGGCATCGACCTCGA
36748019 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATAAGAGCTAGTGTAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATAAGAGCTAGTGTAA
36748084 GACCATGTCTAGGACATGGCATCGACCTCGA
66 GACCATGTCTAGGACATGGCATCGACCTCGA
* * * *
36748115 CATGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACAT
36748160 CTTACCCTTT
Statistics
Matches: 131, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
96 130 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (96 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATAAGAGCTAGTGTAA
GACCATGTCTAGGACATGGCATCGACCTCGA
Found at i:36753596 original size:48 final size:47
Alignment explanation
Indices: 36753431--36753610 Score: 145
Period size: 48 Copynumber: 3.8 Consensus size: 47
36753421 GGTGTAATGC
* * *
36753431 CGATGCCATGTCACAGACATGGTCTTACACT-AGCTCATCCATCAAGT-T
1 CGATGCCATGTCCCAAACATGGTCTTACACTGA-CAC-TCCAT-AAGTAT
* * *
36753479 -GATGCCATGTCCCAAACATGGTCCTACACTGACTA-TCGA-AATTGAGGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGAC-ACTCCATAAGT-A--T
* ** * *
36753527 CGACGCCATGTCCCAGGCATGGTCTTACACTGACACCTCTATACGTAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACA-CTCCATAAGTAT
*
36753575 CGATGCCATGTCCCAAACATGGTCTTACACTAACAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACAC
36753611 ATCTCGTAAC
Statistics
Matches: 105, Mismatches: 17, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
44 3 0.03
46 3 0.03
47 29 0.28
48 35 0.33
49 29 0.28
50 4 0.04
51 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGACACTCCATAAGTAT
Found at i:36753677 original size:46 final size:46
Alignment explanation
Indices: 36753625--36753792 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 46
36753615 CGTAACTGAC
* * *
36753625 GCATGTCCTAGACATGTCTTACACTGGCT-TACATCACGAGGTCGAT
1 GCATGTCCTAGACATGTCTTACACTAGCTCT-CATCACAAGGCCGAT
* * *
36753671 GCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGAT
1 GCATGTCCTAGACATGTCTTACACTAGCTCTCATCACAAGGCCGAT
** * *** *
36753717 GCCATGTCCTAGACATGGTCTTATTCTGGCTCTCAT-AGTGTGGCCAAT
1 G-CATGTCCTAGACAT-GTCTTACACTAGCTCTCATCA-CAAGGCCGAT
* *
36753765 GCATGTCCCAGAAATGTCTTACACTAGC
1 GCATGTCCTAGACATGTCTTACACTAGC
36753793 GCACAAATAA
Statistics
Matches: 97, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
46 49 0.51
47 26 0.27
48 22 0.23
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
GCATGTCCTAGACATGTCTTACACTAGCTCTCATCACAAGGCCGAT
Found at i:36761367 original size:46 final size:46
Alignment explanation
Indices: 36761131--36761394 Score: 170
Period size: 46 Copynumber: 5.6 Consensus size: 46
36761121 AAGGCCGACA
* * * *
36761131 CCATGTCCCAAACATGGTCTTACACTGGCTCTCGCATCTCCGTGTCGATG
1 CCATGTCCCAGACAT-GTCTTACACTAGCTCT--C-TCTCAGTGCCGATG
* *
36761181 CCATGTCCCAGACATGATCTTACACT-GATACCTCTATACA-TGCCGATG
1 CCATGTCCCAGACATG-TCTTACACTAGCT--CTCTCT-CAGTGCCGATG
* * *
36761229 CCATGTCCCAGACATGGTCTTACA-TTGACACATCTCGT-AGT--CGACG
1 CCATGTCCCAGACAT-GTCTTACACTAG-CTC-TCTC-TCAGTGCCGATG
* * *
36761275 -CATGTCCCAGACATGTCTTACAGTGGCT-TACATCATGAG-GCCGATG
1 CCATGTCCCAGACATGTCTTACACTAGCTCT-C-TC-TCAGTGCCGATG
* *
36761321 -CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAGTGCTGATG
1 CCATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAGTGCCGATG
* *
36761367 CCACGTCCTAGACATGTCTTACACTAGC
1 CCATGTCCCAGACATGTCTTACACTAGC
36761395 ACACAAATAA
Statistics
Matches: 173, Mismatches: 22, Indels: 41
0.73 0.09 0.17
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 12 0.07
45 21 0.12
46 42 0.24
47 28 0.16
48 36 0.21
49 7 0.04
50 23 0.13
51 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
CCATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAGTGCCGATG
Found at i:36763231 original size:13 final size:13
Alignment explanation
Indices: 36763215--36763242 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36763205 TTTCTTTATC
36763215 TTTATTTTATTTA
1 TTTATTTTATTTA
36763228 TTTATTTTATTTA
1 TTTATTTTATTTA
36763241 TT
1 TT
36763243 ATTATTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:36763296 original size:23 final size:21
Alignment explanation
Indices: 36763264--36763320 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 21
36763254 TTAAAACTTG
*
36763264 AAATGTATAT-TTGAAATGTTTT
1 AAATATATATATTGAAA--TTTT
*
36763286 ATAATATATATATTTAAATTTT
1 A-AATATATATATTGAAATTTT
36763308 AAATATATATATT
1 AAATATATATATT
36763321 CAAAATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 12 0.39
22 6 0.19
23 8 0.26
24 5 0.16
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (21 bp):
AAATATATATATTGAAATTTT
Found at i:36763359 original size:21 final size:21
Alignment explanation
Indices: 36763316--36763378 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
36763306 TTAAATATAT
36763316 ATATTCAAA-ATTATTTTTATAA
1 ATATT-AAATATTATTTTT-TAA
*
36763338 ATTTTAAATATTATTTTTTAA
1 ATATTAAATATTATTTTTTAA
*
36763359 ATATTACATA-TATTTTTTAA
1 ATATTAAATATTATTTTTTAA
36763379 TAATATAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 10 0.27
21 14 0.38
22 13 0.35
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (21 bp):
ATATTAAATATTATTTTTTAA
Found at i:36763371 original size:23 final size:22
Alignment explanation
Indices: 36763311--36763375 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
36763301 AAATTTTAAA
*
36763311 TATATATATTCAAA-ATTATTTT
1 TATAAATATT-AAATATTATTTT
*
36763333 TATAAATTTTAAATATTATTTT
1 TATAAATATTAAATATTATTTT
*
36763355 T-TAAATATTACATA-TATTTT
1 TATAAATATTAAATATTATTTT
36763375 T
1 T
36763376 TAATAATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.18
21 14 0.37
22 17 0.45
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (22 bp):
TATAAATATTAAATATTATTTT
Found at i:36763433 original size:21 final size:23
Alignment explanation
Indices: 36763408--36763464 Score: 100
Period size: 23 Copynumber: 2.6 Consensus size: 23
36763398 ATTTTTAATG
36763408 TATATTTTAAATTTTAAATATAA
1 TATATTTTAAATTTTAAATATAA
36763431 TATATTTTAAATTTTAAATAT-A
1 TATATTTTAAATTTTAAATATAA
36763453 -ATATTTTAAATT
1 TATATTTTAAATT
36763465 ATGATTTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 12 0.35
22 1 0.03
23 21 0.62
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
TATATTTTAAATTTTAAATATAA
Found at i:36763478 original size:14 final size:15
Alignment explanation
Indices: 36763409--36763480 Score: 60
Period size: 14 Copynumber: 4.9 Consensus size: 15
36763399 TTTTTAATGT
*
36763409 ATATTTTAAATTTTAA
1 ATATTTTAAATTAT-A
** * *
36763425 ATATAATATATTTTA
1 ATATTTTAAATTATA
36763440 A-ATTTTAAA-TATA
1 ATATTTTAAATTATA
*
36763453 ATATTTTAAATTATG
1 ATATTTTAAATTATA
36763468 AT-TTTTAAATTAT
1 ATATTTTAAATTAT
36763481 TTTTAAAGAT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
13 4 0.09
14 24 0.52
15 7 0.15
16 11 0.24
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (15 bp):
ATATTTTAAATTATA
Found at i:36763645 original size:20 final size:20
Alignment explanation
Indices: 36763622--36763688 Score: 77
Period size: 20 Copynumber: 3.4 Consensus size: 20
36763612 ATATTATTAA
36763622 AAAATATATCTTTAAAATTT
1 AAAATATATCTTTAAAATTT
*
36763642 AAAATATATCTTTAAAACAAATT
1 AAAATATATCTTT--AA-AATTT
36763665 AAAA-ATA--TTTAAAATTT
1 AAAATATATCTTTAAAATTT
36763682 AAAATAT
1 AAAATAT
36763689 TATAAAACTA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
17 8 0.20
18 4 0.10
20 16 0.39
22 5 0.12
23 8 0.20
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATATATCTTTAAAATTT
Found at i:36763685 original size:17 final size:17
Alignment explanation
Indices: 36763660--36763695 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
36763650 TCTTTAAAAC
*
36763660 AAATTAAAAATATT-TA
1 AAATTTAAAATATTATA
36763676 AAATTTAAAATATTATA
1 AAATTTAAAATATTATA
36763693 AAA
1 AAA
36763696 CTAATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATTTAAAATATTATA
Found at i:36763780 original size:13 final size:13
Alignment explanation
Indices: 36763764--36763803 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
36763754 AAAATTTATT
36763764 TAATATTTAAAAA
1 TAATATTTAAAAA
*
36763777 TAATATTTAAATA
1 TAATATTTAAAAA
36763790 T-ATATATTAAAAA
1 TAATAT-TTAAAAA
36763803 T
1 T
36763804 TTTAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:36763816 original size:22 final size:23
Alignment explanation
Indices: 36763782--36763825 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
36763772 AAAAATAATA
* *
36763782 TTTAAATATATATATTA-AAAAT
1 TTTAAAAAAATATATTATAAAAT
36763804 TTTAAAAAAATATATTATAAAA
1 TTTAAAAAAATATATTATAAAA
36763826 CATTTCAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
TTTAAAAAAATATATTATAAAAT
Found at i:36765322 original size:43 final size:43
Alignment explanation
Indices: 36765273--36765412 Score: 176
Period size: 43 Copynumber: 3.3 Consensus size: 43
36765263 GTCTGTTTTA
*
36765273 TAGCGGCATTTGTGAAAAAGGTGCCGCTAAAAGTCATGGTCTT
1 TAGCGGCGTTTGTGAAAAAGGTGCCGCTAAAAGTCATGGTCTT
* * *
36765316 TAGCGGCGTTTTTGGGAAAAGCGT--CGCTAAAGGTCATGGTCTT
1 TAGCGGCGTTTGT-GAAAAAG-GTGCCGCTAAAAGTCATGGTCTT
* * * *
36765359 TAGCGACGTTTGCGAAAAAAGCGCCGCTAAAAGTCATGGTCTT
1 TAGCGGCGTTTGTGAAAAAGGTGCCGCTAAAAGTCATGGTCTT
36765402 TAGCGGCGTTT
1 TAGCGGCGTTT
36765413 TTTAAAATAA
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 5 0.06
43 67 0.83
44 6 0.07
45 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAAAAAGGTGCCGCTAAAAGTCATGGTCTT
Found at i:36765395 original size:86 final size:85
Alignment explanation
Indices: 36765229--36765414 Score: 257
Period size: 86 Copynumber: 2.2 Consensus size: 85
36765219 AAGTTATATT
* * * * * * * *
36765229 TTTAGCGGCGTTTATGTGATAAGTGTCGCTAAAGGTCTGTTTTATAGCGGCATTTGTGAAAAAGG
1 TTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTCTGTCTTATAGCGACATTTGCGAAAAAAG
*
36765294 TGCCGCTAAAAGTCATGGTC
66 CGCCGCTAAAAGTCATGGTC
*
36765314 TTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTCATGGTCTT-TAGCGACGTTTGCGAAAAA
1 TTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTC-T-GTCTTATAGCGACATTTGCGAAAAA
36765378 AGCGCCGCTAAAAGTCATGGTC
64 AGCGCCGCTAAAAGTCATGGTC
36765400 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
36765415 TAAAATAATT
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
85 33 0.37
86 52 0.58
87 4 0.04
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (85 bp):
TTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTCTGTCTTATAGCGACATTTGCGAAAAAAG
CGCCGCTAAAAGTCATGGTC
Found at i:36768452 original size:40 final size:39
Alignment explanation
Indices: 36768408--36768550 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 39
36768398 GCTCCTCGTT
* *
36768408 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGTA
1 CAAATGCCTTCGGG-CTTAGCCCGGTTATAGTAATTCGCA
* *
36768448 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGG-TTATAGTAATTCGCA
*
36768488 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGTTA-TAGTAAT-TCGCA
36768527 CAAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGG
36768551 AAATGCCTTC
Statistics
Matches: 92, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
38 1 0.01
39 42 0.46
40 47 0.51
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGTTATAGTAATTCGCA
Found at i:36768525 original size:39 final size:40
Alignment explanation
Indices: 36768408--36768552 Score: 190
Period size: 39 Copynumber: 3.7 Consensus size: 40
36768398 GCTCCTCGTT
* * *
36768408 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
36768448 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36768488 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36768527 CAAATGCCTTCGGG-CTTAGCCCGGAA
1 CAAATGCCTTCGGGACTTAGCCCGGAA
36768553 ATGCCTTCGG
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 49 0.51
40 45 0.47
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:36768558 original size:23 final size:23
Alignment explanation
Indices: 36768528--36768575 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
36768518 TATCTCGCAC
36768528 AAATGCCTTCGGGCTTAGCCCGG
1 AAATGCCTTCGGGCTTAGCCCGG
36768551 AAATGCCTTCGGGCTTAGCCCGG
1 AAATGCCTTCGGGCTTAGCCCGG
36768574 AA
1 AA
36768576 TTAGTATCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (23 bp):
AAATGCCTTCGGGCTTAGCCCGG
Found at i:36768637 original size:101 final size:103
Alignment explanation
Indices: 36768449--36768653 Score: 278
Period size: 101 Copynumber: 2.0 Consensus size: 103
36768439 TAATTCGTAC
*
36768449 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
1 AAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
*
36768514 TTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
66 TTAGTATCTAGCACAAATGCCTTCGGGACTTAGCCCGG
* * * *
36768551 AAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA
36768615 TATT-GTCA-CTTAGCAC-AA-GCCTTCGGGACTTAGCCCGG
65 -ATTAGT-ATC-TAGCACAAATGCCTTCGGGACTTAGCCCGG
36768653 A
1 A
36768654 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
101 44 0.48
102 39 0.42
103 9 0.10
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (103 bp):
AAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
TTAGTATCTAGCACAAATGCCTTCGGGACTTAGCCCGG
Found at i:36776454 original size:40 final size:40
Alignment explanation
Indices: 36776404--36776514 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 40
36776394 GATATAGCTC
* *
36776404 CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAA
1 CTCGTACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAA
* *
36776444 TTCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTAA
1 CTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAA
*
36776484 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CTCGTACAAATGCCTTCGGGACTTAGCCCGGA
36776515 AATGCCTTCG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 10 0.16
40 51 0.81
41 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAA
Found at i:36776521 original size:23 final size:23
Alignment explanation
Indices: 36776491--36776538 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
36776481 TAACTCGCAC
36776491 AAATGCCTTCGGGCTTAGCCCGG
1 AAATGCCTTCGGGCTTAGCCCGG
36776514 AAATGCCTTCGGGCTTAGCCCGG
1 AAATGCCTTCGGGCTTAGCCCGG
36776537 AA
1 AA
36776539 TTAGTATCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (23 bp):
AAATGCCTTCGGGCTTAGCCCGG
Found at i:36776610 original size:102 final size:103
Alignment explanation
Indices: 36776411--36776616 Score: 246
Period size: 102 Copynumber: 2.0 Consensus size: 103
36776401 CTCCTCGTTC
* *
36776411 AAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGTACAAATGCCTTCGGGACTTAACCCGGA
1 AAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
36776476 TTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGG
66 TTTAGTAACTAGCACAAATGCCTTCGGGCTTAGCCCGG
* **
36776514 AAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 AAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACCC
*
36776575 GGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCGG
63 GGAT-TTAGTAAC-TAGCACAAATGCCTTCGGG-CTTAGCCCGG
36776616 A
1 A
36776617 CATCATTCAA
Statistics
Matches: 90, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
101 15 0.17
102 55 0.61
103 20 0.22
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (103 bp):
AAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTAGCACAAATGCCTTCGGGCTTAGCCCGG
Found at i:36780428 original size:22 final size:22
Alignment explanation
Indices: 36780403--36780445 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
36780393 AACTTAATTC
*
36780403 ACATTTATTGATTGAATGTAAT
1 ACATTTATTAATTGAATGTAAT
36780425 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
36780446 ATGAGCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:36789714 original size:19 final size:19
Alignment explanation
Indices: 36789690--36789740 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
36789680 TGTTAGGGTT
36789690 TTATTTATTATTATTATTA
1 TTATTTATTATTATTATTA
**
36789709 TTATTTATTCGTATTATTA
1 TTATTTATTATTATTATTA
*
36789728 TTCTTTATATATT
1 TTATTTAT-TATT
36789741 CTAGCTGCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 24 0.92
20 2 0.08
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (19 bp):
TTATTTATTATTATTATTA
Found at i:36791212 original size:26 final size:26
Alignment explanation
Indices: 36791180--36791243 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
36791170 TTTATGTTTA
*
36791180 TGTTTATTATTTT-TT-AA-TTATTT
1 TGTTTCTTATTTTCTTAAACTTATTT
36791203 T-TATTCTTATTTTCTTAAACTTATTT
1 TGT-TTCTTATTTTCTTAAACTTATTT
36791229 TGTTTCTTATCTTTC
1 TGTTTCTTAT-TTTC
36791244 GAACTATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 1 0.03
23 10 0.29
24 2 0.06
25 2 0.06
26 14 0.41
27 5 0.15
ACGTcount: A:0.19, C:0.09, G:0.03, T:0.69
Consensus pattern (26 bp):
TGTTTCTTATTTTCTTAAACTTATTT
Found at i:36795781 original size:40 final size:40
Alignment explanation
Indices: 36795728--36795912 Score: 318
Period size: 40 Copynumber: 4.6 Consensus size: 40
36795718 ACTACTTGCT
*
36795728 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
36795768 CAAATGCCTTCGGGACTTAGCCAGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
36795808 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
36795848 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
36795888 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
36795913 TTATCATCCG
Statistics
Matches: 139, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
39 1 0.01
40 138 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:36798076 original size:22 final size:22
Alignment explanation
Indices: 36798048--36798090 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
36798038 AACTTAATAC
*
36798048 ACATTTATTGATTGAATGTAAT
1 ACATTTATTAATTGAATGTAAT
36798070 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
36798091 AGGAGTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:36798101 original size:30 final size:30
Alignment explanation
Indices: 36798065--36798125 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
36798055 TTGATTGAAT
36798065 GTAATACATTTATTAATTGAATGTAAAGGA
1 GTAATACATTTATTAATTGAATGTAAAGGA
36798095 GTAATACATTTATTAATTGAATGTAAAGGA
1 GTAATACATTTATTAATTGAATGTAAAGGA
36798125 G
1 G
36798126 CTTATAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.43, C:0.03, G:0.18, T:0.36
Consensus pattern (30 bp):
GTAATACATTTATTAATTGAATGTAAAGGA
Found at i:36798879 original size:59 final size:60
Alignment explanation
Indices: 36798772--36798885 Score: 153
Period size: 59 Copynumber: 1.9 Consensus size: 60
36798762 GAGAAGAAGA
* *
36798772 AAAATCCTATAAATCAAATAAACCTAAATTGCATTATTTTATCATAAAAATCAAAACCCC
1 AAAATCCTAGAAATCAAATAAACCTAAATTGCATCATTTTATCATAAAAATCAAAACCCC
* *
36798832 AAAA-CCTAGAAATCAAAT-AACAC-AAATTGCATCATTTTTTTCTTAAAAATCAAA
1 AAAATCCTAGAAATCAAATAAAC-CTAAATTGCATCA-TTTTATCATAAAAATCAAA
36798886 TCCATAAGGT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
58 13 0.27
59 31 0.65
60 4 0.08
ACGTcount: A:0.50, C:0.18, G:0.03, T:0.29
Consensus pattern (60 bp):
AAAATCCTAGAAATCAAATAAACCTAAATTGCATCATTTTATCATAAAAATCAAAACCCC
Found at i:36803035 original size:68 final size:64
Alignment explanation
Indices: 36802928--36803073 Score: 170
Period size: 68 Copynumber: 2.2 Consensus size: 64
36802918 CCACGTATGC
* * *
36802928 GACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACAT-AGCATCACCCATGT
1 GACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGATGTACAC-TCAGCACCACACATGT
* * *
36802992 GACCTAGCTACATCATAATGTCTCGTAGCTCTCTTGTAC-ACATGATGTGCACTCAGCACCATAC
1 GACCTAGCTACAT-AT-A--TCCCGTAGCTCTCTTGT-CTACATGATGTACACTCAGCACCACAC
36803056 ATGT
61 ATGT
36803060 GACCTAGCTACATA
1 GACCTAGCTACATA
36803074 CCATCTGTAT
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
64 13 0.19
65 2 0.03
66 1 0.01
67 2 0.03
68 51 0.73
69 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (64 bp):
GACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGATGTACACTCAGCACCACACATGT
Found at i:36803572 original size:30 final size:30
Alignment explanation
Indices: 36803538--36803598 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36803528 TCCTTAACTC
36803538 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36803568 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36803598 A
1 A
36803599 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36807460 original size:11 final size:11
Alignment explanation
Indices: 36807444--36807473 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
36807434 AGTCAAATAG
36807444 ATTATTTTATT
1 ATTATTTTATT
36807455 ATTATTTTATT
1 ATTATTTTATT
36807466 ATTATTTT
1 ATTATTTT
36807474 GATGTTATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:36808872 original size:99 final size:95
Alignment explanation
Indices: 36808697--36808878 Score: 233
Period size: 99 Copynumber: 1.9 Consensus size: 95
36808687 CTCAAGACAT
** **
36808697 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTGAGTGTAAAAGACCATG
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGATGTGCCAGTGT-AAAGACCATG
* *
36808762 TCTAGGGCATGGCATCGGCACGGATATGCGA
65 TCCAGGACATGGCATCGGCACGGATATGCGA
36808793 AAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCT-CGATGATGATAGCCAGTGT-AAGA
1 AAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-ACCTACGA-GATG-T-GCCAGTGTAAAGA
36808856 CCATGTCCAGGACATGGCATCGG
60 CCATGTCCAGGACATGGCATCGG
36808879 TAACTTACCC
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
96 14 0.19
97 14 0.19
98 8 0.11
99 31 0.42
100 1 0.01
101 6 0.08
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (95 bp):
AAGCTAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGATGTGCCAGTGTAAAGACCATGT
CCAGGACATGGCATCGGCACGGATATGCGA
Found at i:36812634 original size:70 final size:69
Alignment explanation
Indices: 36812139--36812621 Score: 412
Period size: 70 Copynumber: 6.9 Consensus size: 69
36812129 CTTCCAAAAG
* * * * *
36812139 ATAGTTAGCACGAGCTCAAGCTCCAAATTGTAACCTTAAGGCTCAAAAGTTCAATATTGCAACCC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATATCGCAACCC
36812204 CAAA
66 CAAA
* * * * * ** * * * *
36812208 ATTAGTTAGTGCAAGCTCAAGCTCCTAGTTGTAACCTTAAGGCTTGCAGGTTCAATACCGTAGCC
1 A-TAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATATCGCAACC
36812273 ACCAAA
65 -CCAAA
* * * ** * * * *
36812279 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCTTTAAGGCTCGTAGGTTCAATATTGTAGCCC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATATCGCAACCC
36812344 CAAA
66 CAAA
* * * * * * * * * *
36812348 ACAGTTAGCGTGAGTTCAAGCTCTCAACTATA-ACTGTAAGGCTTACAAGTTTAATACCGCAACC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCT-TAAGGCTCACAAGTTCAATATCGCAA-C
36812412 CCCAAA
64 CCCAAA
* ** * * *
36812418 ATAGTTAGTGTAAACTCAAGCTCCCAATTGTAGCTTTAAGGCTCAGAAGTTCAATATCGCAAACC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATATCGC-AACC
36812483 CCAAA
65 CCAAA
* * * * * * * * * *
36812488 AGAGTTAGTGTGAGCTCAATCTCCTAACTGT-GACTTTAAGGCTCACAAGTTTAATACCGTAACC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAG-CCTTAAGGCTCACAAGTTCAATATCGCAA-C
36812552 CCCAAA
64 CCCAAA
* *
36812558 ATAGTTAACGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGTTCACAAGTTCAATATCGCAACC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATATCGCAACC
36812622 TCTAAGACAG
Statistics
Matches: 327, Mismatches: 78, Indels: 18
0.77 0.18 0.04
Matches are distributed among these distances:
68 1 0.00
69 52 0.16
70 264 0.81
71 10 0.03
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (69 bp):
ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATATCGCAACCC
CAAA
Found at i:36812680 original size:140 final size:141
Alignment explanation
Indices: 36812139--36812683 Score: 559
Period size: 140 Copynumber: 3.9 Consensus size: 141
36812129 CTTCCAAAAG
* * * *
36812139 ATAGTTAGCACGAGCTCAAGCTCCAAATTGTAACCTTAAGGCTCAAAAGTTCAATATTGCAACCC
1 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCAAAAGTTCAATATCGCAACCC
* * * ** * * * *
36812204 CAAAATTAGTTAGTG-CAAGCTCAAGCTCCTAGTTGTAACCTTAAGGCTTGC-AGGTTCAATACC
66 CAAAA-CAGTTAGTGTGAAGCTCAAGCTCCCAACTATAACTTTAAGGCTTACAAGGTTTAATACC
* *
36812267 GTAGCCACCAAA
130 GTAACCCCCAAA
* ** * * * *
36812279 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCTTTAAGGCTCGTAGGTTCAATATTGTAGCCC
1 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCAAAAGTTCAATATCGCAACCC
* * * *
36812344 CAAAACAGTTAGCGTG-AGTTCAAGCTCTCAACTATAACTGTAAGGCTTACAA-GTTTAATACCG
66 CAAAACAGTTAGTGTGAAGCTCAAGCTCCCAACTATAACTTTAAGGCTTACAAGGTTTAATACCG
*
36812407 CAACCCCCAAA
131 TAACCCCCAAA
*** * * *
36812418 ATAGTTAGTGTAAACTCAAGCTCCCAATTGTAGCTTTAAGGCTCAGAAGTTCAATATCGCAAACC
1 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCAAAAGTTCAATATCGC-AACC
* * * * * *
36812483 CCAAAAGAGTTAGTGTG-AGCTCAATCTCCTAACTGTGACTTTAAGGCTCACAA-GTTTAATACC
65 CCAAAACAGTTAGTGTGAAGCTCAAGCTCCCAACTATAACTTTAAGGCTTACAAGGTTTAATACC
36812546 GTAACCCCCAAA
130 GTAACCCCCAAA
* * * * *
36812558 ATAGTTAACGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGTTCACAAGTTCAATATCGCAACCT
1 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCAAAAGTTCAATATCGCAACC-
* * * *
36812623 CTAAGACAGTTAGTGTGAATC-CAAGCTCCCAACTATAGCTTTAAGG-TT-CATAGGTTTAATA
65 CCAAAACAGTTAGTGTGAAGCTCAAGCTCCCAACTATAACTTTAAGGCTTACA-AGGTTTAATA
36812684 TTGTCATCTT
Statistics
Matches: 334, Mismatches: 64, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
138 2 0.01
139 107 0.32
140 223 0.67
141 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (141 bp):
ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCAAAAGTTCAATATCGCAACCC
CAAAACAGTTAGTGTGAAGCTCAAGCTCCCAACTATAACTTTAAGGCTTACAAGGTTTAATACCG
TAACCCCCAAA
Found at i:36818604 original size:19 final size:20
Alignment explanation
Indices: 36818564--36818607 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
36818554 TACCAGTCCT
* *
36818564 ATGAATAGTAGGGTCAACTC
1 ATGAATAGTAGAGTCAAATC
36818584 ATGAATAGT-GAGTCAAATC
1 ATGAATAGTAGAGTCAAATC
36818603 ATGAA
1 ATGAA
36818608 CAATGATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (20 bp):
ATGAATAGTAGAGTCAAATC
Found at i:36819603 original size:14 final size:14
Alignment explanation
Indices: 36819584--36819612 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36819574 CTTAATGAGA
36819584 TAGCTTTGAGATTT
1 TAGCTTTGAGATTT
36819598 TAGCTTTGAGATTT
1 TAGCTTTGAGATTT
36819612 T
1 T
36819613 CTCAAAAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.52
Consensus pattern (14 bp):
TAGCTTTGAGATTT
Found at i:36828889 original size:93 final size:93
Alignment explanation
Indices: 36828761--36828931 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
36828751 GCCCATAAGT
* *
36828761 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACCCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCAGACTCAACTCAA
36828826 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * *
36828854 GAACTC-GAACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCAG-ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCAGACTCAACTCA
*
36828918 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
36828932 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:36828928 original size:46 final size:46
Alignment explanation
Indices: 36828753--36828928 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
36828743 TGTAACCCGC
* *
36828753 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
36828799 CCATAAGTGAACCCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * * *
36828849 -C-TCA-CGAACTC-GAACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAG-ACTCAACTCAACGAGCTCGGACATTCGCAT
*
36828892 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
36828929 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.58
47 25 0.24
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:36831187 original size:18 final size:18
Alignment explanation
Indices: 36831164--36831201 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
36831154 ATCTCAAAAG
36831164 TATGAAAATAACAAAACA
1 TATGAAAATAACAAAACA
36831182 TATGAAAATAACAAAACA
1 TATGAAAATAACAAAACA
36831200 TA
1 TA
36831202 AAGAAAACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.66, C:0.11, G:0.05, T:0.18
Consensus pattern (18 bp):
TATGAAAATAACAAAACA
Found at i:36833630 original size:51 final size:49
Alignment explanation
Indices: 36833502--36833645 Score: 189
Period size: 51 Copynumber: 2.9 Consensus size: 49
36833492 TATTGTGAGG
* * * *
36833502 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGA
* * * *
36833551 TCGCATGTGTAGTACTAATTGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT-GA
*
36833602 TCATGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
36833646 GCTTTGGATA
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 39 0.48
50 2 0.02
51 40 0.49
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGA
Found at i:36836459 original size:15 final size:15
Alignment explanation
Indices: 36836430--36836474 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
36836420 AGTGCTGTAA
36836430 ATGGTATTTCCTTATC
1 ATGG-ATTTCCTTATC
*
36836446 ATGGATTTCTTTATC
1 ATGGATTTCCTTATC
*
36836461 TTGGATTTCCTTAT
1 ATGGATTTCCTTAT
36836475 TCTGGGCTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (15 bp):
ATGGATTTCCTTATC
Done.