Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 122 of 295
Found at i:36838615 original size:51 final size:51
Alignment explanation
Indices: 36838488--36838637 Score: 180
Period size: 51 Copynumber: 3.0 Consensus size: 51
36838478 TATTGTGAGG
* * * *
36838488 TCACATGTGTAGTACTAACT-ACAGGCTACTACGTGTACCCGATAA--TTGG
1 TCACATGTGTAGTACTAAGTGA-AGGCTACTATGCGTACCCGATAACTTTGA
* * *
36838537 TCGCATGTGTAGTATTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
1 TCACATGTGTAGTACTAAGTGAAGGCTACTATGCGTACCCGATAACTTTGA
* * *
36838588 TCACGTGTGTAGTACTAAGTGAAGGCTACTATGCGTACCAGATAGCTTTG
1 TCACATGTGTAGTACTAAGTGAAGGCTACTATGCGTACCCGATAACTTTG
36838638 GCTACAAGAG
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
49 38 0.45
51 47 0.55
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (51 bp):
TCACATGTGTAGTACTAAGTGAAGGCTACTATGCGTACCCGATAACTTTGA
Found at i:36839351 original size:38 final size:38
Alignment explanation
Indices: 36839306--36839381 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
36839296 AATTTTATGG
*
36839306 TGGAAAGATACATGAGTCTTGTTTCTAAGAAAATTTAC
1 TGGAAAGATACATGAGTCTTATTTCTAAGAAAATTTAC
36839344 TGGAAAGATACATGAGTCTTATTTCTAAGAAAATTTAC
1 TGGAAAGATACATGAGTCTTATTTCTAAGAAAATTTAC
36839382 GTATCTTAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (38 bp):
TGGAAAGATACATGAGTCTTATTTCTAAGAAAATTTAC
Found at i:36841547 original size:5 final size:5
Alignment explanation
Indices: 36841537--36841580 Score: 51
Period size: 5 Copynumber: 9.6 Consensus size: 5
36841527 TTGTGTGTTC
*
36841537 TTTAT TTTA- TTT-T TTTAT TTT-T ATT-T TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
36841581 CTCAAATTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 12 0.35
5 22 0.65
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTAT
Found at i:36841555 original size:13 final size:13
Alignment explanation
Indices: 36841537--36841575 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
36841527 TTGTGTGTTC
36841537 TTTATTTTATTTT
1 TTTATTTTATTTT
36841550 TTTATTTT-TATTT
1 TTTATTTTAT-TTT
36841563 TTTATTTTATTTT
1 TTTATTTTATTTT
36841576 ATTTTCTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.04
13 22 0.92
14 1 0.04
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:36845977 original size:5 final size:5
Alignment explanation
Indices: 36845967--36845998 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
36845957 TTGTGTGTTC
36845967 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
36845999 CACATCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:36845981 original size:9 final size:9
Alignment explanation
Indices: 36845967--36845997 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
36845957 TTGTGTGTTC
36845967 TTTATTTTA
1 TTTATTTTA
36845976 TTTATTTTA
1 TTTATTTTA
36845985 TTTTATTTTA
1 -TTTATTTTA
36845995 TTT
1 TTT
36845998 TCACATCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:36855378 original size:49 final size:49
Alignment explanation
Indices: 36855300--36855545 Score: 278
Period size: 49 Copynumber: 5.0 Consensus size: 49
36855290 GTAGCCGAAG
* * *
36855300 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
36855349 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * *
36855399 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * *
36855449 GTTATCAGGTACGA-ATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTAC-ACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * * *
36855499 CAATCTAGTACACGTAGTAGCCTTCACTTAGTACTACATACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
36855546 TCACAATAGC
Statistics
Matches: 164, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 77 0.47
50 48 0.29
51 37 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:36855484 original size:101 final size:98
Alignment explanation
Indices: 36855314--36855545 Score: 315
Period size: 100 Copynumber: 2.3 Consensus size: 98
36855304 CTGGTACGCA
* * * *
36855314 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* *
36855379 GTACTACACACGTGACCTAACCATCT-GATACACG
66 GTACTACACACGCGACC-AACAATCTAG-TACACG
*
36855413 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGA-ATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTAC-ACATAGTAGCCTGCAC
*
36855477 TTAGTACTACACATGCGACCAACAATCTAGTACACG
63 TTAGTACTACACACGCGACCAACAATCTAGTACACG
* *
36855513 TAGTAGCCTTCACTTAGTACTACATACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
36855546 TCACAATAGC
Statistics
Matches: 118, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
99 30 0.25
100 45 0.38
101 42 0.36
102 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACAATCTAGTACACG
Found at i:36856227 original size:30 final size:30
Alignment explanation
Indices: 36856193--36856252 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36856183 CTTTAATACG
36856193 AACTTTGGAAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGAAAAATTACAC-TTTTGCCCCTA
* * *
36856223 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36856253 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36859988 original size:44 final size:42
Alignment explanation
Indices: 36859874--36859987 Score: 167
Period size: 42 Copynumber: 2.7 Consensus size: 42
36859864 GGCACGGCCT
* * *
36859874 AGCACACAGCCTA-ACACACGGGTGTGTGTGGCATTTTTTAG
1 AGCACACAGACTAGCCACACGGGTGTGTGTGGCACTTTTTAG
*
36859915 AGCACACAAACTAGCCACACGGGTGTGTGTGGCACTTTTTAG
1 AGCACACAGACTAGCCACACGGGTGTGTGTGGCACTTTTTAG
* *
36859957 GGCACACAGACTAGCCACACGGGCGTGTGTG
1 AGCACACAGACTAGCCACACGGGTGTGTGTG
36859988 TTGGCCGTGT
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
41 11 0.17
42 54 0.83
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.22
Consensus pattern (42 bp):
AGCACACAGACTAGCCACACGGGTGTGTGTGGCACTTTTTAG
Found at i:36864114 original size:19 final size:20
Alignment explanation
Indices: 36864087--36864129 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
36864077 TGATTAAGTT
*
36864087 TTAATTAATTAAAG-TTTAA
1 TTAAGTAATTAAAGATTTAA
36864106 TTAAGTAATTAAAGATTTAA
1 TTAAGTAATTAAAGATTTAA
36864126 TTAA
1 TTAA
36864130 CGTATATAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
TTAAGTAATTAAAGATTTAA
Found at i:36864376 original size:18 final size:18
Alignment explanation
Indices: 36864353--36864388 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
36864343 AAGTTTTTGA
36864353 AAGTTTTCATTGTTGTTT
1 AAGTTTTCATTGTTGTTT
36864371 AAGTTTTCATTGTTGTTT
1 AAGTTTTCATTGTTGTTT
36864389 TCTTGAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.17, T:0.61
Consensus pattern (18 bp):
AAGTTTTCATTGTTGTTT
Found at i:36867133 original size:43 final size:43
Alignment explanation
Indices: 36867037--36867154 Score: 150
Period size: 42 Copynumber: 2.7 Consensus size: 43
36867027 GTCGCTAAAA
* *
36867037 TTAGCGGCG-TTTGTTTGAAAAAAACGCCGCTAAAGATCATGACTT
1 TTAGCGGCGCTTT-TTT--AAAAAACGCCGCTAAAGATCAGGACCT
* *
36867082 TTAG-GGCGCTTTTTTAAAAAACGTCGCTAAAGATCGGGACCT
1 TTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAGATCAGGACCT
*
36867124 TTAGCGGCGCTTTTATAAAAAACGCCGCTAA
1 TTAGCGGCGCTTTTTTAAAAAACGCCGCTAA
36867155 TTTGCCCAGT
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
42 27 0.42
43 24 0.37
44 7 0.11
45 7 0.11
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (43 bp):
TTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAGATCAGGACCT
Found at i:36867472 original size:21 final size:21
Alignment explanation
Indices: 36867448--36867495 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
36867438 TTCTGTTCTG
*
36867448 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
36867469 CTCCGCCTCCCGCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
36867490 CTCCGC
1 CTCCGC
36867496 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.58, G:0.21, T:0.21
Consensus pattern (21 bp):
CTCCGCCTCCCGCGCTGCTGC
Found at i:36871193 original size:12 final size:12
Alignment explanation
Indices: 36871176--36871201 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36871166 GTCATCCTCC
36871176 TCATCAGATTCA
1 TCATCAGATTCA
36871188 TCATCAGATTCA
1 TCATCAGATTCA
36871200 TC
1 TC
36871202 CCTCGATCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:36872577 original size:40 final size:40
Alignment explanation
Indices: 36872532--36872612 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
36872522 TGCATCCCGC
*
36872532 ATCATACCTTCCATGTCATCTTCTTTAACATACTGACGGT
1 ATCATACCTTCCATGTCATCTTCTCTAACATACTGACGGT
*
36872572 ATCATACCTTCCATGTCATCTTCTCTAATATACTGACGGT
1 ATCATACCTTCCATGTCATCTTCTCTAACATACTGACGGT
36872612 A
1 A
36872613 ACCAGTATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.26, C:0.27, G:0.10, T:0.37
Consensus pattern (40 bp):
ATCATACCTTCCATGTCATCTTCTCTAACATACTGACGGT
Found at i:36873112 original size:18 final size:18
Alignment explanation
Indices: 36873089--36873163 Score: 87
Period size: 18 Copynumber: 4.0 Consensus size: 18
36873079 TATGTAAGTT
* *
36873089 GTTATGTACATTATGTGA
1 GTTATGTAAATTATGTAA
36873107 GTTATGTAAATTATGTAA
1 GTTATGTAAATTATGTAA
* *
36873125 GTTATGTGAGTTATGTAA
1 GTTATGTAAATTATGTAA
36873143 GTTGTTATGTAAATTATGTAA
1 ---GTTATGTAAATTATGTAA
36873164 CACCCCGAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
18 32 0.67
21 16 0.33
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.45
Consensus pattern (18 bp):
GTTATGTAAATTATGTAA
Found at i:36873129 original size:27 final size:27
Alignment explanation
Indices: 36873090--36873142 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
36873080 ATGTAAGTTG
36873090 TTATGTACATTATGTGAGTTATGTAAA
1 TTATGTACATTATGTGAGTTATGTAAA
36873117 TTATGTA-AGTTATGTGAGTTATGTAA
1 TTATGTACA-TTATGTGAGTTATGTAA
36873143 GTTGTTATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (27 bp):
TTATGTACATTATGTGAGTTATGTAAA
Found at i:36873163 original size:9 final size:9
Alignment explanation
Indices: 36873074--36873145 Score: 74
Period size: 9 Copynumber: 7.7 Consensus size: 9
36873064 ATGTATTAGT
36873074 TAAGTTATG
1 TAAGTTATG
36873083 TAAGTTGTTATG
1 TAA---GTTATG
36873095 TACA-TTATG
1 TA-AGTTATG
*
36873104 TGAGTTATG
1 TAAGTTATG
*
36873113 TAAATTATG
1 TAAGTTATG
36873122 TAAGTTATG
1 TAAGTTATG
*
36873131 TGAGTTATG
1 TAAGTTATG
36873140 TAAGTT
1 TAAGTT
36873146 GTTATGTAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
8 1 0.02
9 42 0.81
12 8 0.15
13 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:36874633 original size:39 final size:39
Alignment explanation
Indices: 36874513--36874773 Score: 284
Period size: 39 Copynumber: 6.6 Consensus size: 39
36874503 CTCCTCGTTT
* *
36874513 AAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCAC
1 AAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCAC
* * *
36874553 AAATACCTTCGGGACTTAACCC-GAATTTAGTAACTCGCAC
1 AAATGCCTTCGGG-CTTAGCCCGGAA-TTAGTATCTCGCAC
36874593 AAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCAC
1 AAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCAC
**
36874632 AAATGCCTTCGGGCTTAGCCCAAAATTAGTATCTCGCAC
1 AAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCAC
*
36874671 AAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCGCAC
1 AAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCAC
* * *
36874710 AAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCAC
1 AAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCAC
36874751 -AA-GCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGG-CTTAGCCCGGA
36874774 CATCATTCAA
Statistics
Matches: 195, Mismatches: 17, Indels: 19
0.84 0.07 0.08
Matches are distributed among these distances:
39 127 0.65
40 58 0.30
41 10 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCAC
Found at i:36874760 original size:117 final size:119
Alignment explanation
Indices: 36874513--36874770 Score: 307
Period size: 118 Copynumber: 2.2 Consensus size: 119
36874503 CTCCTCGTTT
* ***
36874513 AAATGCCTTCGGGACATAGCCC-GGTTATAGTAAT-TCGCACAAATACCTTCGGGACTTAACCCG
1 AAATGCCTTCGGGACTTAGCCCAAAAT-TAGT-ATCTCGCACAAATACCTTCGGGACTTAACCCG
* *
36874576 AATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCAC
64 AAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCAC
* *
36874632 AAATGCCTTCGGG-CTTAGCCCAAAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGAA
1 AAATGCCTTCGGGACTTAGCCCAAAATTAGTATCTCGCACAAATACCTTCGGGACTTAACCCGAA
* * *
36874695 ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCAC
66 ATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TAGCAC
36874751 -AA-GCCTTCGGGACTTAGCCC
1 AAATGCCTTCGGGACTTAGCCC
36874771 GGACATCATT
Statistics
Matches: 121, Mismatches: 11, Indels: 15
0.82 0.07 0.10
Matches are distributed among these distances:
117 46 0.38
118 52 0.43
119 23 0.19
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (119 bp):
AAATGCCTTCGGGACTTAGCCCAAAATTAGTATCTCGCACAAATACCTTCGGGACTTAACCCGAA
ATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCAC
Found at i:36882569 original size:40 final size:40
Alignment explanation
Indices: 36882533--36882681 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
36882523 GATATAGCTC
* *
36882533 CTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAA
1 CTCGTACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
36882573 TTCGTACAAATGCCTTCGGGACTTAACCCGGATT-TAGTAA
1 CTCGTACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAA
* * *
36882613 CTCGCACAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAT
1 CTCGTACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAA
*
36882652 CTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CTCGTACAAATGCCTTCGGGACTTAGCCCGG
36882682 AAATGCCTTC
Statistics
Matches: 97, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
39 44 0.45
40 51 0.53
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCGTACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:36882656 original size:39 final size:40
Alignment explanation
Indices: 36882539--36882683 Score: 190
Period size: 39 Copynumber: 3.7 Consensus size: 40
36882529 GCTCCTCGTT
* * *
36882539 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
36882579 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36882619 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36882658 CAAATGCCTTCGGG-CTTAGCCCGGAA
1 CAAATGCCTTCGGGACTTAGCCCGGAA
36882684 ATGCCTTCGG
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 49 0.51
40 45 0.47
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:36882689 original size:23 final size:22
Alignment explanation
Indices: 36882659--36882707 Score: 89
Period size: 23 Copynumber: 2.2 Consensus size: 22
36882649 TATCTCGCAC
36882659 AAATGCCTTCGGGCTTAGCCCGG
1 AAATGCCTTCGGGCTTAGCCC-G
36882682 AAATGCCTTCGGGCTTAGCCCG
1 AAATGCCTTCGGGCTTAGCCCG
36882704 AAAT
1 AAAT
36882708 TAGTATCTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 5 0.19
23 21 0.81
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (22 bp):
AAATGCCTTCGGGCTTAGCCCG
Found at i:36882768 original size:101 final size:103
Alignment explanation
Indices: 36882580--36882784 Score: 269
Period size: 101 Copynumber: 2.0 Consensus size: 103
36882570 TAATTCGTAC
* *
36882580 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
1 AAATGCCTTCGGGACTTAACCCGAAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
*
36882645 TTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
66 TTAGTATCTAGCACAAATGCCTTCGGGACTTAGCCCGG
* * * *
36882682 AAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AAATGCCTTCGGGACTTAACCCGAAATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA
36882746 TATT-GTCA-CTTAGCAC-AA-GCCTTCGGGACTTAGCCCGG
65 -ATTAGT-ATC-TAGCACAAATGCCTTCGGGACTTAGCCCGG
36882784 A
1 A
36882785 CATCATTCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
101 43 0.47
102 39 0.43
103 9 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (103 bp):
AAATGCCTTCGGGACTTAACCCGAAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
TTAGTATCTAGCACAAATGCCTTCGGGACTTAGCCCGG
Found at i:36884411 original size:9 final size:9
Alignment explanation
Indices: 36884383--36884428 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
36884373 CTGTCACAAA
36884383 TTATGTAAG
1 TTATGTAAG
* *
36884392 TTATATGAG
1 TTATGTAAG
36884401 TTATGTAAG
1 TTATGTAAG
*
36884410 TTATGTAAT
1 TTATGTAAG
*
36884419 TTATTTAAG
1 TTATGTAAG
36884428 T
1 T
36884429 AATGATCAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (9 bp):
TTATGTAAG
Found at i:36885133 original size:10 final size:10
Alignment explanation
Indices: 36885118--36885146 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
36885108 AATAAAATTA
36885118 ATTCATACTT
1 ATTCATACTT
36885128 ATTCATACTT
1 ATTCATACTT
36885138 ATTCATACT
1 ATTCATACT
36885147 CCACTCTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.48
Consensus pattern (10 bp):
ATTCATACTT
Found at i:36885649 original size:183 final size:183
Alignment explanation
Indices: 36885336--36886401 Score: 1988
Period size: 183 Copynumber: 5.8 Consensus size: 183
36885326 CCTAGAACAG
36885336 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36885401 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36885466 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
36885519 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
* *
36885584 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTTAGTTGAACCAATAGTTGTAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
* *
36885649 AGCAGGAAGCAGTAACTAAAATACATACAACATTAATTCACTAATATAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
36885702 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
* *
36885767 ATCAGTACCAAATATTAATTCGAAGATTAAATGGTAGCTTCAGTTGAACCAATAGTTGCAAGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
*
36885832 AGCAGGAAGCAGTAACTGAAATACATAACAACATTATTTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACAT-ACAACATTAATTCACTAATACAGACAC
36885886 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
36885951 ATTAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36886016 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
*
36886069 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCAAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36886134 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36886199 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
* * *
36886252 ATGTAAGATTATAAGAGTAGCTCCAAATATTTTTTTAGTTTAAGCAAATATAAAAACTTTATCTA
1 ATGTAAGATTATAAGAGTAGCACCAAATA-TATTTCAGTTTAAGCAAATATAAAAACTTTATCTA
*
36886317 TATCAGTACCAAATATTAATTCGAACATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAG
65 TATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAG
*
36886382 GAGCAGGAAGTAGTAACTGA
130 GAGCAGGAAGCAGTAACTGA
36886402 TGCTGAATCT
Statistics
Matches: 858, Mismatches: 23, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
183 565 0.66
184 293 0.34
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.28
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:36886400 original size:367 final size:366
Alignment explanation
Indices: 36885336--36886401 Score: 1988
Period size: 367 Copynumber: 2.9 Consensus size: 366
36885326 CCTAGAACAG
36885336 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36885401 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36885466 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGTAAGATTAT
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGTAAGATTAT
36885531 AAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCAGTACCAAA
196 AAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCAGTACCAAA
* *
36885596 TATTAATTCGAAGATTAAATGGCAGCTTTAGTTGAACCAATAGTTGTAGGAGGAGCAGGAAGCAG
261 TATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGCAG
* *
36885661 TAACTAAAATACATACAACATTAATTCACTAATATAGACAC
326 TAACTGAAATACATACAACATTAATTCACTAATACAGACAC
36885702 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
* *
36885767 ATCAGTACCAAATATTAATTCGAAGATTAAATGGTAGCTTCAGTTGAACCAATAGTTGCAAGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
*
36885832 AGCAGGAAGCAGTAACTGAAATACATAACAACATTATTTCACTAATACAGACACATGTAAGATTA
131 AGCAGGAAGCAGTAACTGAAATACAT-ACAACATTAATTCACTAATACAGACACATGTAAGATTA
*
36885897 TAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATTAGTACCAA
195 TAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCAGTACCAA
36885962 ATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGCA
260 ATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGCA
36886027 GTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
325 GTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
*
36886069 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCAAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36886134 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36886199 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGTAAGATTAT
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGTAAGATTAT
* * *
36886264 AAGAGTAGCTCCAAATATTTTTTTAGTTTAAGCAAATATAAAAACTTTATCTATATCAGTACCAA
196 AAGAGTAGCACCAAATA-TATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCAGTACCAA
* *
36886329 ATATTAATTCGAACATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGTA
260 ATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGCA
36886394 GTAACTGA
325 GTAACTGA
36886402 TGCTGAATCT
Statistics
Matches: 680, Mismatches: 18, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
366 208 0.31
367 472 0.69
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.28
Consensus pattern (366 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGTAAGATTAT
AAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCAGTACCAAA
TATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGCAG
TAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:36887680 original size:149 final size:148
Alignment explanation
Indices: 36887410--36887707 Score: 542
Period size: 149 Copynumber: 2.0 Consensus size: 148
36887400 CCTTAATCAT
*
36887410 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTGTTATTGACTTAAA
1 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTGTTATCGACTTAAA
*
36887475 AGGATATGCCAAAAAGCTACAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTTTTT
66 AGGATATGCCAAAAAGCTACAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATC-TCTT
36887540 TTTTACAATTTATTGCATA
130 TTTTACAATTTATTGCATA
* *
36887559 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACTAGTTGTTATCGACTTAAA
1 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTGTTATCGACTTAAA
*
36887624 AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTCTTT
66 AGGATATGCCAAAAAGCTACAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTCTTT
36887689 TTTACAATTTATTGCATA
131 TTTACAATTTATTGCATA
36887707 A
1 A
36887708 CATTTCCGAG
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
148 23 0.16
149 121 0.84
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (148 bp):
AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTGTTATCGACTTAAA
AGGATATGCCAAAAAGCTACAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTCTTT
TTTACAATTTATTGCATA
Found at i:36890848 original size:14 final size:14
Alignment explanation
Indices: 36890831--36890903 Score: 64
Period size: 14 Copynumber: 5.4 Consensus size: 14
36890821 CCTTAAACCC
36890831 TAAACCATATATCT
1 TAAACCATATATCT
*
36890845 TAAACC--ATA-GT
1 TAAACCATATATCT
*
36890856 T-AACTCATAAATCT
1 TAAAC-CATATATCT
36890870 TAAACCCATATATCT
1 TAAA-CCATATATCT
* *
36890885 TAAACCATAAACCT
1 TAAACCATATATCT
36890899 TAAAC
1 TAAAC
36890904 TATAATGATA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
10 3 0.06
11 3 0.06
12 3 0.06
13 2 0.04
14 21 0.45
15 14 0.30
16 1 0.02
ACGTcount: A:0.45, C:0.23, G:0.01, T:0.30
Consensus pattern (14 bp):
TAAACCATATATCT
Found at i:36891124 original size:41 final size:40
Alignment explanation
Indices: 36891075--36891168 Score: 152
Period size: 41 Copynumber: 2.3 Consensus size: 40
36891065 CTTTTAGCAT
36891075 CGTTTTACCAAAAGCACCGCTAATGCTCTGGTCTTTAGCGG
1 CGTTTTACCAAAAGCACCGCTAATGCTCT-GTCTTTAGCGG
* *
36891116 CGTTTTACCAAAAGCGCCGCTAATGCTCTGTTTTTAGCGG
1 CGTTTTACCAAAAGCACCGCTAATGCTCTGTCTTTAGCGG
*
36891156 TGTTTTACCAAAA
1 CGTTTTACCAAAA
36891169 ATGCCGGTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
40 22 0.44
41 28 0.56
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.32
Consensus pattern (40 bp):
CGTTTTACCAAAAGCACCGCTAATGCTCTGTCTTTAGCGG
Found at i:36891163 original size:40 final size:40
Alignment explanation
Indices: 36891066--36891232 Score: 165
Period size: 40 Copynumber: 4.1 Consensus size: 40
36891056 GTTATATGAC
** *
36891066 TTTTAGCATCGTTTTACCAAAAGCACCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
*
36891107 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* ** * * *
36891147 TTTTAGCGGTGTTTTACCAAAAATGCCGGTATTGCTTTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* *** *
36891187 TTTTAGTGGCGTTTTTGGTAAAA-CGCCGCTATTGCTCTGT
1 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTGT
36891227 GTTTTA
1 -TTTTA
36891233 CAATTTTTAC
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
40 58 0.55
41 47 0.45
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:36893104 original size:22 final size:22
Alignment explanation
Indices: 36893070--36893112 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36893060 CAACACTTCC
*
36893070 CATATATTGTGATAATTTTGTA
1 CATATATTATGATAATTTTGTA
*
36893092 CATATTTTATGATAATTTTGT
1 CATATATTATGATAATTTTGT
36893113 CTTCATCGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (22 bp):
CATATATTATGATAATTTTGTA
Found at i:36898832 original size:18 final size:18
Alignment explanation
Indices: 36898809--36898847 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
36898799 TAAAACTAAA
36898809 TATATTATTAGGAGATAT
1 TATATTATTAGGAGATAT
*
36898827 TATATTATTATGAGATAT
1 TATATTATTAGGAGATAT
36898845 TAT
1 TAT
36898848 CTTTTAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (18 bp):
TATATTATTAGGAGATAT
Found at i:36902148 original size:65 final size:65
Alignment explanation
Indices: 36902008--36902148 Score: 167
Period size: 65 Copynumber: 2.2 Consensus size: 65
36901998 CTCTCGTATG
* * * * **
36902008 TCTAGACCGTGTGAAAATTAGGGAGGCTACTGACTTAGCCACACAGCCACATGACACGCTTGTGT
1 TCTAGACCGTGTAAAAATTAGGGAAGCTACTAACTTAGCCACACAGCCACATCACACGCCCGTGT
* * * *
36902073 GCTAGGCCGTGTAAAAATTAGGGAAGCTACTAACTTAGCCACACGGCCA-GTCACACGCCCGTGT
1 TCTAGACCGTGTAAAAATTAGGGAAGCTACTAACTTAGCCACACAGCCACATCACACGCCCGTGT
*
36902137 ATCTAGCCCGTG
1 -TCTAGACCGTG
36902149 CTCGAAACTG
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
64 11 0.17
65 52 0.83
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (65 bp):
TCTAGACCGTGTAAAAATTAGGGAAGCTACTAACTTAGCCACACAGCCACATCACACGCCCGTGT
Found at i:36903339 original size:44 final size:44
Alignment explanation
Indices: 36903248--36903357 Score: 127
Period size: 44 Copynumber: 2.5 Consensus size: 44
36903238 ATGCCATTGA
* * * * *
36903248 CCCAGACAGGGTCTTACATG-AA-ATCAAATACAATGCTGATGT
1 CCCAGACATGGTCTAACACGAAATATCAAATACAATGCTAACGT
*
36903290 CCCAGACATGGTCTAACACGTAAATATCAAAT-CGATGCTAACGT
1 CCCAGACATGGTCTAACACG-AAATATCAAATACAATGCTAACGT
*
36903334 CCCAGACATGGTCTTACACGAAAT
1 CCCAGACATGGTCTAACACGAAAT
36903358 CACATATTGA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 17 0.29
43 4 0.07
44 30 0.52
45 7 0.12
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (44 bp):
CCCAGACATGGTCTAACACGAAATATCAAATACAATGCTAACGT
Found at i:36906164 original size:12 final size:12
Alignment explanation
Indices: 36906147--36906176 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
36906137 ACCACACGGG
36906147 CGTGTGCTTGGC
1 CGTGTGCTTGGC
*
36906159 CGTGTGGTTGGC
1 CGTGTGCTTGGC
36906171 CGTGTG
1 CGTGTG
36906177 TGAGACACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.20, G:0.47, T:0.33
Consensus pattern (12 bp):
CGTGTGCTTGGC
Found at i:36919622 original size:49 final size:49
Alignment explanation
Indices: 36919567--36919837 Score: 220
Period size: 49 Copynumber: 5.6 Consensus size: 49
36919557 ATCTAAGTCA
*
36919567 ATGCCATGTCCCAGACAGGTTTTACACTAGCTTCCATATATCGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTG
* * * * *
36919616 ATGCCATGTCCCAGATAGGTCTTACACTGGC-CCTCACT-TATCTGTGTC-G
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTC-CA-TATATC-GAGGCTG
* ** * ** *
36919665 ATGCCATGTCCCAAACAGGTCTT--ACT--CTAACACACCTC-AAGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTG
* * * *
36919709 ATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATCTTGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTG
* * * *
36919758 ATGCCATGTCCTAGACAGGTCTTACACTGGC-TCTCATCTATCG-GTGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTC-CATATATCGAG-GCTG
* *
36919807 ATGCCATGTCTCAGAAAGGTCTTACACTAGC
1 ATGCCATGTCCCAGACAGGTCTTACACTAGC
36919838 ACACACATCA
Statistics
Matches: 173, Mismatches: 36, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 22 0.13
45 5 0.03
46 3 0.02
47 3 0.02
48 10 0.06
49 125 0.72
50 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTG
Found at i:36919684 original size:98 final size:96
Alignment explanation
Indices: 36919537--36919834 Score: 281
Period size: 93 Copynumber: 3.1 Consensus size: 96
36919527 TTCCAAACAT
* * * *
36919537 GGTCTTACACTGGCTCTCAC-ATCTAAGTCAATGCCATGTCCCAGACAGGTTTTACACTAGCTTC
1 GGTCTTACACTGGCCCTCACTATCTGAGTCGATGCCATGTCCCAGACAGGTCTTACACT-GCTTC
36919601 CATATATCGAGGCTGATGCCATGTCCCAGATA
65 CATATATCGAGGCTGATGCCATGTCCCAGATA
* * **
36919633 GGTCTTACACTGGCCCTCACTTATCTGTGTCGATGCCATGTCCCAAACAGGTCTT--ACT-CTAA
1 GGTCTTACACTGGCCCTCAC-TATCTGAGTCGATGCCATGTCCCAGACAGGTCTTACACTGCTTC
* ** *
36919695 CACACCTC-AAGCTGATGCCATGTCCCAGATA
65 CATATATCGAGGCTGATGCCATGTCCCAGATA
* * * *
36919726 GGTCTTACACTAG-CTTGCA-TATCTTGAGGCTGATGCCATGTCCTAGACAGGTCTTACACTGGC
1 GGTCTTACACTGGCCCT-CACTATC-TGAGTC-GATGCCATGTCCCAGACAGGTCTTACACT-GC
* * * *
36919789 -TCTCATCTATCG-GTGCCGATGCCATGTCTCAGAAA
62 TTC-CATATATCGAG-GCTGATGCCATGTCCCAGATA
36919824 GGTCTTACACT
1 GGTCTTACACT
36919835 AGCACACACA
Statistics
Matches: 162, Mismatches: 28, Indels: 22
0.76 0.13 0.10
Matches are distributed among these distances:
91 4 0.02
92 6 0.04
93 58 0.36
94 7 0.04
95 3 0.02
96 22 0.14
97 5 0.03
98 57 0.35
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (96 bp):
GGTCTTACACTGGCCCTCACTATCTGAGTCGATGCCATGTCCCAGACAGGTCTTACACTGCTTCC
ATATATCGAGGCTGATGCCATGTCCCAGATA
Found at i:36919827 original size:142 final size:142
Alignment explanation
Indices: 36919567--36919841 Score: 401
Period size: 142 Copynumber: 1.9 Consensus size: 142
36919557 ATCTAAGTCA
* *
36919567 ATGCCATGTCCCAGACAGGTTTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCCAGAT
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCCAGAC
* * *
36919632 AGGTCTTACACTGGCCCTCACTTATCTGTGTCGATGCCATGTCCCAAACAGGTCTTACTCTAACA
66 AGGTCTTACACTGGCCCTCACTTATCGGTGCCGATGCCATGTCCCAAACAGGTCTTACACTAACA
36919697 CACCTCAAGCTG
131 CACCTCAAGCTG
* * * * *
36919709 ATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATCTTGAGGCTGATGCCATGTCCTAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCCAGAC
* * *
36919774 AGGTCTTACACTGGCTCTCA-TCTATCGGTGCCGATGCCATGTCTCAGAA-AGGTCTTACACTAG
66 AGGTCTTACACTGGCCCTCACT-TATCGGTGCCGATGCCATGTCCCA-AACAGGTCTTACACTAA
36919837 CACAC
129 CACAC
36919842 ACATCACCCA
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
141 1 0.01
142 115 0.97
143 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (142 bp):
ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCCAGAC
AGGTCTTACACTGGCCCTCACTTATCGGTGCCGATGCCATGTCCCAAACAGGTCTTACACTAACA
CACCTCAAGCTG
Found at i:36928886 original size:43 final size:43
Alignment explanation
Indices: 36928824--36928910 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
36928814 TGAATGAGCA
*
36928824 AGTGGTAATCATGGGATTTAATGCAAATTGTAATAATAGTATC
1 AGTGGTAATCATGGAATTTAATGCAAATTGTAATAATAGTATC
36928867 AGTGGTAATCATGGAATTTAATGCAAATTGTAATAATAGTATC
1 AGTGGTAATCATGGAATTTAATGCAAATTGTAATAATAGTATC
36928910 A
1 A
36928911 TTATGGACGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (43 bp):
AGTGGTAATCATGGAATTTAATGCAAATTGTAATAATAGTATC
Found at i:36931156 original size:56 final size:56
Alignment explanation
Indices: 36931033--36931159 Score: 132
Period size: 56 Copynumber: 2.3 Consensus size: 56
36931023 ATGTATATGA
* * * *
36931033 GGCATCGATATGTGACTCCGATATATACGTGTGAGTAAGACCATGTTTTATACGTT
1 GGCATCGATATGTGACTCCGATATATACGTGCGAGTAAGACCATGATCTAGACGTT
* * * ** *
36931089 GCCATCAATATGTGACTCTGATATATGTGTGCGAGTAAGACCCT-ATCTAGGACAG-T
1 GGCATCGATATGTGACTCCGATATATACGTGCGAGTAAGACCATGATCTA-GAC-GTT
36931145 GGCATCGATATGTGA
1 GGCATCGATATGTGA
36931160 TTACATGTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
55 3 0.05
56 53 0.93
57 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (56 bp):
GGCATCGATATGTGACTCCGATATATACGTGCGAGTAAGACCATGATCTAGACGTT
Found at i:36954170 original size:49 final size:49
Alignment explanation
Indices: 36954063--36954235 Score: 176
Period size: 49 Copynumber: 3.6 Consensus size: 49
36954053 AATGCAGATA
* * * *
36954063 CCATGTCCCAGACTTGGTCTTACACTGGCTCATC--CATC-AAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGACT-ATCAAAATCGAAGCCGATG
* *
36954110 CCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCCGACG
1 CCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAAGCCGATG
* * * *
36954159 CCATGTCCCAGACATGGTCTTACACT-AGCTCTTACATATCCG-TGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGA-CTATCA-AAAT-CGAAGCCGATG
*
36954209 CCATGTCCCAAACATGGTCTTACACTG
1 CCATGTCCCAGACATGGTCTTACACTG
36954236 GCTCTCATAA
Statistics
Matches: 107, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
46 3 0.03
47 28 0.26
48 4 0.04
49 36 0.34
50 34 0.32
51 2 0.02
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.25
Consensus pattern (49 bp):
CCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAAGCCGATG
Found at i:36954227 original size:50 final size:48
Alignment explanation
Indices: 36954063--36954280 Score: 189
Period size: 50 Copynumber: 4.5 Consensus size: 48
36954053 AATGCAGATA
* * * *
36954063 CCATGTCCCAGACTTGGTCTTACACTGGCTCATC--CATC-AAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACT-GCTC-TCAAAATCGAGGCCGATG
* *
36954110 CCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCCGACG
1 CCATGTCCCAGACATGGTCTTACACTG-CTCTCAAAATCGAGGCCGATG
* * *
36954159 CCATGTCCCAGACATGGTCTTACACTAGCTCTTACATATCCG-TGCCGATG
1 CCATGTCCCAGACATGGTCTTACACT-GCTCTCA-AAAT-CGAGGCCGATG
* * * **
36954209 CCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGTTGATG
1 CCATGTCCCAGACATGGTCTTACACT-GCTCTCAAAATCGAGGCCGATG
*
36954257 -AATGTCCCAGACAT-GTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
36954281 AGCACACAAA
Statistics
Matches: 142, Mismatches: 21, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
46 13 0.09
47 40 0.28
48 8 0.06
49 38 0.27
50 41 0.29
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTGCTCTCAAAATCGAGGCCGATG
Found at i:36957906 original size:58 final size:60
Alignment explanation
Indices: 36957860--36957980 Score: 156
Period size: 61 Copynumber: 2.0 Consensus size: 60
36957850 AATCACTTTA
* * * *
36957860 ATATTAAATTATTATAATACTTA-T-CAAGATAAATATTATATTAAACTTAATATTAAAT
1 ATATTAAACTAATAGAATACTTACTACAAGATAAATATTAAATTAAACTTAATATTAAAT
* *
36957918 ATATTAAACTAATAGAATATTTATCTACAAGATAAATATTAAATTAAATTTAATATTACAAT
1 ATATTAAACTAATAGAATACTTA-CTACAAGATAAATATTAAATTAAACTTAATATTA-AAT
36957980 A
1 A
36957981 ATTGCTTTAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
58 19 0.36
60 1 0.02
61 29 0.55
62 4 0.08
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.40
Consensus pattern (60 bp):
ATATTAAACTAATAGAATACTTACTACAAGATAAATATTAAATTAAACTTAATATTAAAT
Found at i:36961062 original size:21 final size:21
Alignment explanation
Indices: 36961037--36961076 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
36961027 AATAATTTAC
*
36961037 ATATATAACC-TTTATAATAAA
1 ATATAAAACCATTT-TAATAAA
36961058 ATATAAAACCATTTTAATA
1 ATATAAAACCATTTTAATA
36961077 TAAGGTCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATAAAACCATTTTAATAAA
Found at i:36969095 original size:875 final size:875
Alignment explanation
Indices: 36967405--36969157 Score: 3506
Period size: 875 Copynumber: 2.0 Consensus size: 875
36967395 AAGGTTTTTA
36967405 TCCCAGATTTCAAGAATAATCATACAATAGTCCTAGTGGCATTCTTACCTAATCTATATGACATG
1 TCCCAGATTTCAAGAATAATCATACAATAGTCCTAGTGGCATTCTTACCTAATCTATATGACATG
36967470 CTTCCAATATATGCATGACATGCTATGATAATTTTATAATATTCACATTCATTTATTCACAAGAA
66 CTTCCAATATATGCATGACATGCTATGATAATTTTATAATATTCACATTCATTTATTCACAAGAA
36967535 TTAATCAATCATAAAAACAAACTATTTTGATTCTCTACATTTTTTCTTTTAATGGAAAAACTGGA
131 TTAATCAATCATAAAAACAAACTATTTTGATTCTCTACATTTTTTCTTTTAATGGAAAAACTGGA
36967600 AAAGTGAATGTGAACCGTGCATCAGGTATGGTTCCAAGAAAGGGAGGTGAGTTATATTTGAACAC
196 AAAGTGAATGTGAACCGTGCATCAGGTATGGTTCCAAGAAAGGGAGGTGAGTTATATTTGAACAC
36967665 TTAAAAACCAGTATTTTCTTTGCCAAAGCCAATCCAAGACATGAACATTCACATTACCACACTTC
261 TTAAAAACCAGTATTTTCTTTGCCAAAGCCAATCCAAGACATGAACATTCACATTACCACACTTC
36967730 TCACAATAATAAAAGAACCTAAAGAAGTAAATGAAGCAATACAACACATGTATCTTCTCATTACC
326 TCACAATAATAAAAGAACCTAAAGAAGTAAATGAAGCAATACAACACATGTATCTTCTCATTACC
36967795 ACACTTATTATTTTTTTAATTGACCAATTGTGGATCACCTTATACATATTTATCAACATTATAAT
391 ACACTTATTATTTTTTTAATTGACCAATTGTGGATCACCTTATACATATTTATCAACATTATAAT
36967860 ATAACATAATATCAATAATATCTAAGAAAAAGAGGTGAGTAATATTTCAACACTTAAAAACCAAG
456 ATAACATAATATCAATAATATCTAAGAAAAAGAGGTGAGTAATATTTCAACACTTAAAAACCAAG
36967925 CTTTTTTTTTGCCAGAGCCAATCCTAGACATGCACCTTCTCATTACCACACTTCTCACAACAATC
521 CTTTTTTTTTGCCAGAGCCAATCCTAGACATGCACCTTCTCATTACCACACTTCTCACAACAATC
36967990 GAATAACCTACAGAAATGAATGGAACAATATAACACATTTATTTTCTCATTACCACACTTATTAT
586 GAATAACCTACAGAAATGAATGGAACAATATAACACATTTATTTTCTCATTACCACACTTATTAT
36968055 TATTTTTAATCGATCAACTTTGGTTCTATTTTCAGAAAATAAATGAAAAATAAACAATTATAAAC
651 TATTTTTAATCGATCAACTTTGGTTCTATTTTCAGAAAATAAATGAAAAATAAACAATTATAAAC
36968120 AATTATCAAATAGATATATGAAGAGATGGGTAATTAAAATAAAATTGTTAGTCAAGGTTTCTATG
716 AATTATCAAATAGATATATGAAGAGATGGGTAATTAAAATAAAATTGTTAGTCAAGGTTTCTATG
36968185 GTTCTATTTCCAGAAAATAAATGAAAAATAAAAAATTACATAGTTTTTCACCATAAGGCATGCCT
781 GTTCTATTTCCAGAAAATAAATGAAAAATAAAAAATTACATAGTTTTTCACCATAAGGCATGCCT
36968250 TGGGACTTCAACTTTCATCATTCCATCTAT
846 TGGGACTTCAACTTTCATCATTCCATCTAT
36968280 TCCCAGATTTCAAGAATAATCATACAATAGTCCTAGTGGCATTCTTACCTAATCTATATGACATG
1 TCCCAGATTTCAAGAATAATCATACAATAGTCCTAGTGGCATTCTTACCTAATCTATATGACATG
36968345 CTTCCAATATATGCATGACATGCTATGATAATTTTATAATATTCACATTCATTTATTCACAAGAA
66 CTTCCAATATATGCATGACATGCTATGATAATTTTATAATATTCACATTCATTTATTCACAAGAA
36968410 TTAATCAATCATAAAAACAAACTATTTTGATTCTCTACATTTTTTCTTTTAATGGAAAAACTGGA
131 TTAATCAATCATAAAAACAAACTATTTTGATTCTCTACATTTTTTCTTTTAATGGAAAAACTGGA
36968475 AAAGTGAATGTGAACCGTGCATCAGGTATGGTTCCAAGAAAGGGAGGTGAGTTATATTTGAACAC
196 AAAGTGAATGTGAACCGTGCATCAGGTATGGTTCCAAGAAAGGGAGGTGAGTTATATTTGAACAC
36968540 TTAAAAACCAGTATTTTCTTTGCCAAAGCCAATCCAAGACATGAACATTCACATTACCACACTTC
261 TTAAAAACCAGTATTTTCTTTGCCAAAGCCAATCCAAGACATGAACATTCACATTACCACACTTC
36968605 TCACAATAATAAAAGAACCTAAAGAAGTAAATGAAGCAATACAACACATGTATCTTCTCATTACC
326 TCACAATAATAAAAGAACCTAAAGAAGTAAATGAAGCAATACAACACATGTATCTTCTCATTACC
36968670 ACACTTATTATTTTTTTAATTGACCAATTGTGGATCACCTTATACATATTTATCAACATTATAAT
391 ACACTTATTATTTTTTTAATTGACCAATTGTGGATCACCTTATACATATTTATCAACATTATAAT
36968735 ATAACATAATATCAATAATATCTAAGAAAAAGAGGTGAGTAATATTTCAACACTTAAAAACCAAG
456 ATAACATAATATCAATAATATCTAAGAAAAAGAGGTGAGTAATATTTCAACACTTAAAAACCAAG
36968800 CTTTTTTTTTGCCAGAGCCAATCCTAGACATGCACCTTCTCATTACCACACTTCTCACAACAATC
521 CTTTTTTTTTGCCAGAGCCAATCCTAGACATGCACCTTCTCATTACCACACTTCTCACAACAATC
36968865 GAATAACCTACAGAAATGAATGGAACAATATAACACATTTATTTTCTCATTACCACACTTATTAT
586 GAATAACCTACAGAAATGAATGGAACAATATAACACATTTATTTTCTCATTACCACACTTATTAT
36968930 TATTTTTAATCGATCAACTTTGGTTCTATTTTCAGAAAATAAATGAAAAATAAACAATTATAAAC
651 TATTTTTAATCGATCAACTTTGGTTCTATTTTCAGAAAATAAATGAAAAATAAACAATTATAAAC
36968995 AATTATCAAATAGATATATGAAGAGATGGGTAATTAAAATAAAATTGTTAGTCAAGGTTTCTATG
716 AATTATCAAATAGATATATGAAGAGATGGGTAATTAAAATAAAATTGTTAGTCAAGGTTTCTATG
36969060 GTTCTATTTCCAGAAAATAAATGAAAAATAAAAAATTACATAGTTTTTCACCATAAGGCATGCCT
781 GTTCTATTTCCAGAAAATAAATGAAAAATAAAAAATTACATAGTTTTTCACCATAAGGCATGCCT
36969125 TGGGACTTCAACTTTCATCATTCCATCTAT
846 TGGGACTTCAACTTTCATCATTCCATCTAT
36969155 TCC
1 TCC
36969158 TCGTCATGGA
Statistics
Matches: 878, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
875 878 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.33
Consensus pattern (875 bp):
TCCCAGATTTCAAGAATAATCATACAATAGTCCTAGTGGCATTCTTACCTAATCTATATGACATG
CTTCCAATATATGCATGACATGCTATGATAATTTTATAATATTCACATTCATTTATTCACAAGAA
TTAATCAATCATAAAAACAAACTATTTTGATTCTCTACATTTTTTCTTTTAATGGAAAAACTGGA
AAAGTGAATGTGAACCGTGCATCAGGTATGGTTCCAAGAAAGGGAGGTGAGTTATATTTGAACAC
TTAAAAACCAGTATTTTCTTTGCCAAAGCCAATCCAAGACATGAACATTCACATTACCACACTTC
TCACAATAATAAAAGAACCTAAAGAAGTAAATGAAGCAATACAACACATGTATCTTCTCATTACC
ACACTTATTATTTTTTTAATTGACCAATTGTGGATCACCTTATACATATTTATCAACATTATAAT
ATAACATAATATCAATAATATCTAAGAAAAAGAGGTGAGTAATATTTCAACACTTAAAAACCAAG
CTTTTTTTTTGCCAGAGCCAATCCTAGACATGCACCTTCTCATTACCACACTTCTCACAACAATC
GAATAACCTACAGAAATGAATGGAACAATATAACACATTTATTTTCTCATTACCACACTTATTAT
TATTTTTAATCGATCAACTTTGGTTCTATTTTCAGAAAATAAATGAAAAATAAACAATTATAAAC
AATTATCAAATAGATATATGAAGAGATGGGTAATTAAAATAAAATTGTTAGTCAAGGTTTCTATG
GTTCTATTTCCAGAAAATAAATGAAAAATAAAAAATTACATAGTTTTTCACCATAAGGCATGCCT
TGGGACTTCAACTTTCATCATTCCATCTAT
Found at i:36971961 original size:28 final size:28
Alignment explanation
Indices: 36971921--36972012 Score: 141
Period size: 28 Copynumber: 3.3 Consensus size: 28
36971911 TGTACTAGAG
36971921 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
*
36971949 TACCCTTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
* *
36971977 TGCCCCTATGTATGCAAAATGACC-TCTA
1 TACCCCTATGTATGCAAAATTACCAT-TA
36972005 TACCCCTA
1 TACCCCTA
36972013 GGGTTAATTT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 1 0.02
28 57 0.98
ACGTcount: A:0.33, C:0.27, G:0.09, T:0.32
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATTA
Found at i:36972149 original size:28 final size:27
Alignment explanation
Indices: 36972118--36972199 Score: 85
Period size: 28 Copynumber: 3.0 Consensus size: 27
36972108 AGGAAGCGTC
**
36972118 CTGGTGGTTATGCCACAAATAATCTGTT
1 CTGGTGGCCATGCCACAAAT-ATCTGTT
* **
36972146 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCCATGCCACAAATATCTGTT
36972173 CTGGTGG-CACTGCCACAAAATATCTGT
1 CTGGTGGCCA-TGCCAC-AAATATCTGT
36972200 ATCTAGCGAC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
26 1 0.02
27 20 0.45
28 23 0.52
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCCATGCCACAAATATCTGTT
Found at i:36974665 original size:28 final size:28
Alignment explanation
Indices: 36974633--36974707 Score: 100
Period size: 28 Copynumber: 2.6 Consensus size: 28
36974623 AATTAGATTG
36974633 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
36974661 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
36974689 GCACTAAGTGTGCGGAGTT
1 GCACTAAGTGTGC-GAGTT
36974708 ACTATATATT
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
28 33 0.77
29 9 0.21
30 1 0.02
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:36986305 original size:97 final size:94
Alignment explanation
Indices: 36986063--36986340 Score: 273
Period size: 97 Copynumber: 2.9 Consensus size: 94
36986053 CCACATTATG
* *
36986063 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAAACGA-GAGCTAGTGTAAGAC
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTG--ATGATGAGCCAGTGTAAGAC
* ** * *
36986127 ACGTCTAGGACAT-GATTTAGCCTCGAGATGT
63 ATGTCTAGGACATGGATCGAGCATAGAGATGT
* *** *
36986158 A-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGACCACATTATCAGAGCCAGTGTAAGACA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGAT--GAGCCAGTGTAAGAC-
*
36986220 ATGTCTAGGACATGGCATCGA-CATAGATATGT
63 ATGTCTAGGACATGG-ATCGAGCATAGAGATGT
*
36986252 AAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGTGTAAGACC
1 -AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAT-GATGAGCCAGTGTAAGA-C
*
36986317 ATGTCTGGGACATGGTATCG-GCAT
63 ATGTCTAGGACATGG-ATCGAGCAT
36986341 TATACCCTAT
Statistics
Matches: 149, Mismatches: 21, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
89 2 0.01
92 21 0.14
93 26 0.17
94 22 0.15
95 5 0.03
96 12 0.08
97 49 0.33
98 10 0.07
99 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGATGAGCCAGTGTAAGACATG
TCTAGGACATGGATCGAGCATAGAGATGT
Found at i:36986331 original size:47 final size:47
Alignment explanation
Indices: 36986023--36986341 Score: 243
Period size: 47 Copynumber: 6.8 Consensus size: 47
36986013 TTTGTGTGCT
*
36986023 AGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCCACATT-ATGA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTGATGATGAGCC
* *
36986069 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAAACGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTG--ATGATGAGCC
* * ** * *
36986117 AGTGTAAGA-CACGTCTAGGACAT-G-ATTTAGCCTCGA-GATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGATGATG--AGCC
* *
36986163 AGTGTAAGA-CATGTCTGGGACAT-GCATTGACCACATT-ATCA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-T--CGACATTGATGATGAGCC
* * * * *
36986209 AGTGTAAGACAATGTCTAGGACATGGCATCGACATAGATATGTAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTG--ATG-ATGAGCC
36986259 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAT-GATGAGCC
* *
36986306 AGTGTAAGACCATGTCTGGGACATGGTATCGGCATT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATT
36986342 ATACCCTATG
Statistics
Matches: 220, Mismatches: 30, Indels: 44
0.75 0.10 0.15
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 13 0.06
46 51 0.23
47 78 0.35
48 32 0.15
49 6 0.03
50 36 0.16
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATGATGAGCC
Found at i:36988202 original size:43 final size:43
Alignment explanation
Indices: 36988154--36988236 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
36988144 GAGATATGTG
*
36988154 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCTC
1 GCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGCTC
*
36988197 GCATCCGAGCTCGTTGAGAGGTTCAAGTTCATTATGGATG
1 GCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATG
36988237 TGTTTCATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGCTC
Found at i:36991057 original size:38 final size:38
Alignment explanation
Indices: 36991006--36991084 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
36990996 TTACAACTTA
*
36991006 AACCACACCAAAATTTCCACGCCCAATGTAGTCCATAC
1 AACCACACCAAAATTTCCACGCCCAATGTAATCCATAC
*
36991044 AACCACACCAAAATTTCCACGCCTAATGTAATCCATAC
1 AACCACACCAAAATTTCCACGCCCAATGTAATCCATAC
36991082 AAC
1 AAC
36991085 TTTATATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.39, C:0.35, G:0.06, T:0.19
Consensus pattern (38 bp):
AACCACACCAAAATTTCCACGCCCAATGTAATCCATAC
Found at i:36992651 original size:68 final size:68
Alignment explanation
Indices: 36992559--36992821 Score: 301
Period size: 68 Copynumber: 3.9 Consensus size: 68
36992549 TTCCTGGTTC
* * * * * * *
36992559 ACTGTCCTGGCAGACTTTGTATGTTGTCATAGCCCAATTATGGTCTTACACATTATAATCTCATC
1 ACTGTCCTGACGGACTTCGTATGTTGCCATAGCCCAACTATGGTCTTACACATTATGATCTCATG
36992624 TTT
66 TTT
* ** * * * *
36992627 ACTATCCTGAATGACTTCGTATGTTACCATAGCCCAAATATTGTCTTACACATTATGATATCATG
1 ACTGTCCTGACGGACTTCGTATGTTGCCATAGCCCAACTATGGTCTTACACATTATGATCTCATG
36992692 TTT
66 TTT
** * * *
36992695 ACTGTCCTGACGGACTTCGTATGTTTTCATGGCCCAACTATGGTATTACACATTATGATCTTATG
1 ACTGTCCTGACGGACTTCGTATGTTGCCATAGCCCAACTATGGTCTTACACATTATGATCTCATG
36992760 TTT
66 TTT
* * * * * *
36992763 AATGTCCTGGCGGACTTCATATGTTGCCATAGTCCAGCTATGGTGTTACACATTATGAT
1 ACTGTCCTGACGGACTTCGTATGTTGCCATAGCCCAACTATGGTCTTACACATTATGAT
36992822 GACATGCACC
Statistics
Matches: 163, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
68 163 1.00
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (68 bp):
ACTGTCCTGACGGACTTCGTATGTTGCCATAGCCCAACTATGGTCTTACACATTATGATCTCATG
TTT
Found at i:36998535 original size:24 final size:24
Alignment explanation
Indices: 36998496--36998601 Score: 149
Period size: 24 Copynumber: 4.4 Consensus size: 24
36998486 GTCGGCCAAC
*
36998496 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
36998521 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
* *
36998545 TCCTCTCCCTTATCAGCTTCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
36998569 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
36998593 TCTTCTCCT
1 TCCTCTCCT
36998602 GACAGCCTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
24 70 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.38, G:0.06, T:0.38
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:37004672 original size:26 final size:26
Alignment explanation
Indices: 37004643--37004695 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
37004633 TCAAACATGC
37004643 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
37004669 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
37004695 A
1 A
37004696 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:37005984 original size:24 final size:24
Alignment explanation
Indices: 37005947--37006023 Score: 102
Period size: 24 Copynumber: 3.2 Consensus size: 24
37005937 CCAACTCCTG
*
37005947 CTCCTTGATCAGCTCCTAAACCTT
1 CTCCTTTATCAGCTCCTAAACCTT
*
37005971 CTCCTTTATTAGCTCCTAAATCC-T
1 CTCCTTTATCAGCTCCTAAA-CCTT
* *
37005995 CTCCCTTATCAGCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAACCTT
37006019 CTCCT
1 CTCCT
37006024 GACAGCATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
23 1 0.02
24 42 0.93
25 2 0.04
ACGTcount: A:0.19, C:0.38, G:0.05, T:0.38
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAACCTT
Found at i:37011788 original size:56 final size:56
Alignment explanation
Indices: 37011697--37011808 Score: 154
Period size: 56 Copynumber: 2.0 Consensus size: 56
37011687 TCTTACATGT
* * * *
37011697 AATCACATATCGATGCCACTCTCCTAGATAGGGTCTTACTCGTACACATATATCGG
1 AATCACATATCGATGCCACTCTACTAAACAGGGTCTTACTCGCACACATATATCGG
* *
37011753 AATCACATATCGATGCCA-TCATATTAAACATGGTCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCACTC-TACTAAACAGGGTCTTACTCGCACACATATATCGG
37011809 TGCCATGGTC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
55 2 0.04
56 47 0.96
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCACTCTACTAAACAGGGTCTTACTCGCACACATATATCGG
Found at i:37011816 original size:31 final size:32
Alignment explanation
Indices: 37011781--37011840 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
37011771 TCATATTAAA
*
37011781 CATGGTCTTACTCGCACA-CATATATCGGTGC
1 CATGGTCTTACTCGCACATCACATATCGGTGC
*
37011812 CATGGTCTTACTTGCACATCACATATCGG
1 CATGGTCTTACTCGCACATCACATATCGG
37011841 AATCCTATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (32 bp):
CATGGTCTTACTCGCACATCACATATCGGTGC
Found at i:37020007 original size:22 final size:23
Alignment explanation
Indices: 37019961--37020022 Score: 90
Period size: 22 Copynumber: 2.7 Consensus size: 23
37019951 CGAAGAAAAA
37019961 TGAAATAAATAATATTAAACAATT
1 TGAAATAAATAATA-TAAACAATT
*
37019985 TGAAATAAATAATA-AGACAATT
1 TGAAATAAATAATATAAACAATT
*
37020007 TTAAATAAATAATATA
1 TGAAATAAATAATATA
37020023 TATCAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
22 20 0.57
23 1 0.03
24 14 0.40
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (23 bp):
TGAAATAAATAATATAAACAATT
Found at i:37020200 original size:29 final size:28
Alignment explanation
Indices: 37020167--37020221 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
37020157 ATATAAAAAG
* *
37020167 TTTAAAATAAATAATATGTGAAAAATAAA
1 TTTAAAATAAAGAATATAT-AAAAATAAA
*
37020196 TTTAAAATAGAGAATATATAAAAATA
1 TTTAAAATAAAGAATATATAAAAATA
37020222 TATATATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (28 bp):
TTTAAAATAAAGAATATATAAAAATAAA
Found at i:37020402 original size:21 final size:18
Alignment explanation
Indices: 37020371--37020409 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 18
37020361 TTAAAATGAT
37020371 AATATATAAAATAATTTAA
1 AATATATAAAAT-ATTTAA
37020390 AATATATGAAAAATATTTAA
1 AATATAT--AAAATATTTAA
37020410 CAAATAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 6 0.33
21 5 0.28
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
AATATATAAAATATTTAA
Found at i:37022252 original size:45 final size:45
Alignment explanation
Indices: 37022196--37022550 Score: 229
Period size: 45 Copynumber: 7.9 Consensus size: 45
37022186 AGATAAAAGC
* * *
37022196 TGGTAATTTCAACCTGTTCCACTACAACTTCAAGGAGATAAGGTT
1 TGGTAACTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGGTT
** * * ** * * *
37022241 TGGTGGCTTCAATCTGCCCCAATGTAATTTCAAGGAAAAAAGGTT
1 TGGTAACTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGGTT
* * **
37022286 T-GTAACTTCGATCTACTCCACTGA-AACTTCAAGGAGATAAGAAT
1 TGGTAACTTCAATCTGCTCCACT-ACAACTTCAAGGAGATAAGGTT
* * * *
37022330 TGGTAATTTCAACCTTCTCCACTACAACTTCAGGGAGATAAGGTT
1 TGGTAACTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGGTT
** * ** * * *
37022375 TGGTGGCTTCAATCTGCTCCAATGTAATTTCAGGGAGA-AGAGATT
1 TGGTAACTTCAATCTGCTCCACTACAACTTCAAGGAGATA-AGGTT
* * * ** **
37022420 T-GTAGCTTCGATCTACTCCACTGGAACTTCAAGGAGATAAGAAT
1 TGGTAACTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGGTT
* * * * *
37022464 TGGCAATTTTAA-CATGCTCCACTGCAACTT-TAGGAAGATAAGGTT
1 TGGTAACTTCAATC-TGCTCCACTACAACTTCAAGG-AGATAAGGTT
* * *
37022509 TGGTAGCTTGAATCTGCTCCACTGCAACTTC-AGGAAGATAAG
1 TGGTAACTTCAATCTGCTCCACTACAACTTCAAGG-AGATAAG
37022551 ATCCACCATA
Statistics
Matches: 237, Mismatches: 63, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
44 71 0.30
45 165 0.70
46 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (45 bp):
TGGTAACTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGGTT
Found at i:37022448 original size:89 final size:89
Alignment explanation
Indices: 37022123--37022550 Score: 276
Period size: 89 Copynumber: 4.8 Consensus size: 89
37022113 CTTCGACTTA
* * * *
37022123 CTCCAATGTAATTTCAGGGAGA-AGAGATTTGTAGCTTCAATCTACTCCGCTGGAACTTAAAGGA
1 CTCCAATGTAACTTCAAGGAGATA-AGATTTGTAGCTTCAATCTACTCCACTGGAACTTCAAGGA
* * * *
37022187 GATAAAAG-CTGGTAATTTCAACCTG
65 GAT-AAGGTTTGGTAACTTCAATCTG
* * ** * * * * * * *
37022212 TTCCACTACAACTTCAAGGAGATAAGGTTTGGTGGCTTCAATCTGCCCCAATGTAATTTCAAGGA
1 CTCCAATGTAACTTCAAGGAGATAAGATTT-GTAGCTTCAATCTACTCCACTGGAACTTCAAGGA
* * * *
37022277 AAAAAGGTTT-GTAACTTCGATCTA
65 GATAAGGTTTGGTAACTTCAATCTG
* * * ** * * ** *
37022301 CTCCACTGAAACTTCAAGGAGATAAGAATTGGTAATTTCAACCTTCTCCACTACAACTTCAGGGA
1 CTCCAATGTAACTTCAAGGAGATAAG-ATTTGTAGCTTCAATCTACTCCACTGGAACTTCAAGGA
**
37022366 GATAAGGTTTGGTGGCTTCAATCTG
65 GATAAGGTTTGGTAACTTCAATCTG
* * *
37022391 CTCCAATGTAATTTCAGGGAGA-AGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGA
1 CTCCAATGTAACTTCAAGGAGATA-AGATTTGTAGCTTCAATCTACTCCACTGGAACTTCAAGGA
** * * *
37022455 GATAAGAATTGGCAATTTTAA-CATG
65 GATAAGGTTTGGTAACTTCAATC-TG
* * * * * * *
37022480 CTCCACTGCAACTT-TAGGAAGATAAGGTTTGGTAGCTTGAATCTGCTCCACTGCAACTTC-AGG
1 CTCCAATGTAACTTCAAGG-AGATAAGATTT-GTAGCTTCAATCTACTCCACTGGAACTTCAAGG
37022543 AAGATAAG
64 -AGATAAG
37022551 ATCCACCATA
Statistics
Matches: 253, Mismatches: 75, Indels: 21
0.72 0.21 0.06
Matches are distributed among these distances:
88 3 0.01
89 156 0.62
90 94 0.37
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (89 bp):
CTCCAATGTAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGGAACTTCAAGGAG
ATAAGGTTTGGTAACTTCAATCTG
Found at i:37022542 original size:134 final size:133
Alignment explanation
Indices: 37022123--37022529 Score: 582
Period size: 134 Copynumber: 3.0 Consensus size: 133
37022113 CTTCGACTTA
* * *
37022123 CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCGCTGGAACTTAAAGGAG
1 CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
* *
37022188 ATAA-AAGCTGGTAATTTCAACCTGTTCCACTACAACTTCAAGGAGATAAGGTTTGGTGGCTTCA
66 ATAAGAA-TTGGTAATTTCAACCTGCTCCACTACAACTT-AAGGAGATAAGGTTTGGTGGCTTCA
37022252 ATCTG
129 ATCTG
* * * * * * *
37022257 CCCCAATGTAATTTCAAGGAAAAAAGGTTTGTAACTTCGATCTACTCCACTGAAACTTCAAGGAG
1 CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
* *
37022322 ATAAGAATTGGTAATTTCAACCTTCTCCACTACAACTTCAGGGAGATAAGGTTTGGTGGCTTCAA
66 ATAAGAATTGGTAATTTCAACCTGCTCCACTACAACTT-AAGGAGATAAGGTTTGGTGGCTTCAA
37022387 TCTG
130 TCTG
37022391 CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
1 CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
* * * * * * *
37022456 ATAAGAATTGGCAATTTTAACATGCTCCACTGCAACTTTAGGAAGATAAGGTTTGGTAGCTTGAA
66 ATAAGAATTGGTAATTTCAACCTGCTCCACTACAACTTAAGG-AGATAAGGTTTGGTGGCTTCAA
37022521 TCTG
130 TCTG
37022525 CTCCA
1 CTCCA
37022530 CTGCAACTTC
Statistics
Matches: 241, Mismatches: 30, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
133 2 0.01
134 237 0.98
135 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (133 bp):
CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
ATAAGAATTGGTAATTTCAACCTGCTCCACTACAACTTAAGGAGATAAGGTTTGGTGGCTTCAAT
CTG
Found at i:37022660 original size:44 final size:43
Alignment explanation
Indices: 37022612--37022825 Score: 110
Period size: 44 Copynumber: 4.8 Consensus size: 43
37022602 AAGAGTCGCT
37022612 ATCTTCGATCTGCTCCACTGCTACTCAGGGAGATAAGATCTACA
1 ATCTTC-ATCTGCTCCACTGCTACTCAGGGAGATAAGATCTACA
* * ***
37022656 ATCTTCAGTCTGCTCC-CTTGCTACTTAAGGAAGATAAGA-CTGGT
1 ATCTTCA-TCTGCTCCAC-TGCTAC-TCAGGGAGATAAGATCTACA
** * * * * * * * *
37022700 GGCTTAAATCTGCTCCCCTACTACCTCTGGAATATAAGAT-TCGCC
1 ATCTT-CATCTGCTCCACTGCTA-CTCAGGGAGATAAGATCT-ACA
* * * * * *
37022745 GTCTTCGATTTGCTCTACTACTGCTTAGGGAGATAAGATCTACA
1 ATCTTC-ATCTGCTCCACTGCTACTCAGGGAGATAAGATCTACA
* * *
37022789 ATCTTCAGCCTGCTCCACTGTTGCTCAGGGAGATAAG
1 ATCTTCA-TCTGCTCCACTGCTACTCAGGGAGATAAG
37022826 GCTAGTGGCT
Statistics
Matches: 126, Mismatches: 33, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
43 3 0.02
44 90 0.71
45 33 0.26
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (43 bp):
ATCTTCATCTGCTCCACTGCTACTCAGGGAGATAAGATCTACA
Found at i:37022881 original size:132 final size:132
Alignment explanation
Indices: 37022613--37023050 Score: 556
Period size: 132 Copynumber: 3.3 Consensus size: 132
37022603 AGAGTCGCTA
* * *
37022613 TCTTCGATCTGCTCCACTGCTACTCAGGGAGATAAGATCTACAATCTTCAGTCTGCTCC-CTTGC
1 TCTTCGATCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCAC-TGC
* * * * * * * * * *
37022677 TACTTAAGGAAGATAAGACTGGTGGCTTAAATCTGCTCCCCTACTACCTCTGGAATATAAGATTC
65 TGC-TCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTAACTTTGAAAGATAAGATTC
37022742 GCCG
129 GCCG
* * * *
37022746 TCTTCGATTTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGTT
1 TCTTCGATCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCT
*
37022811 GCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGTTTCCCTACTAACTTTGAAAGATAAGATTCGC
66 GCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTAACTTTGAAAGATAAGATTCGC
37022876 CG
131 CG
* * * * *
37022878 TCTTTGATCTGCTCCACTACTGCTCAGGGAGATAAGATCTATAATCTTTAGCCTACTGCACTGCT
1 TCTTCGATCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCT
* * *
37022943 GCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTACT-ACCTCGAGAAGATAAGATTCG
66 GCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTAACTTTGA-AAGATAAGATTCG
*
37023007 TCG
130 CCG
* * * *
37023010 TCTTCGATTTTCTCTACTACTGCTTAGGGAGATAAGATCTA
1 TCTTCGATCTGCTCCACTACTGCTCAGGGAGATAAGATCTA
37023051 TGAATTCACC
Statistics
Matches: 266, Mismatches: 37, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
131 5 0.02
132 203 0.76
133 57 0.21
134 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
TCTTCGATCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCT
GCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTAACTTTGAAAGATAAGATTCGC
CG
Found at i:37024328 original size:12 final size:11
Alignment explanation
Indices: 37024311--37024376 Score: 62
Period size: 12 Copynumber: 5.7 Consensus size: 11
37024301 TTCTTCTCTT
37024311 TTTTTTTTTTGA
1 TTTTTTTTTT-A
*
37024323 -TTTTTTATTA
1 TTTTTTTTTTA
*
37024333 TTTTTTGATTTA
1 TTTTTT-TTTTA
37024345 TTTTTTTTATTA
1 TTTTTTTT-TTA
*
37024357 TTTTTATTATTA
1 TTTTT-TTTTTA
37024369 TTTTTTTT
1 TTTTTTTT
37024377 GATCTCAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
10 1 0.02
11 16 0.36
12 25 0.57
13 2 0.05
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:37024350 original size:24 final size:24
Alignment explanation
Indices: 37024323--37024376 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
37024313 TTTTTTTTGA
37024323 TTTTTTATTATTTTT-TGATTTATT
1 TTTTTTATTATTTTTATGA-TTATT
*
37024347 TTTTTTATTATTTTTATTATTATT
1 TTTTTTATTATTTTTATGATTATT
37024371 TTTTTT
1 TTTTTT
37024377 GATCTCAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 26 0.93
25 2 0.07
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (24 bp):
TTTTTTATTATTTTTATGATTATT
Found at i:37024353 original size:9 final size:9
Alignment explanation
Indices: 37024309--37024364 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
37024299 CTTTCTTCTC
37024309 TTTTT-TTT
1 TTTTTATTT
*
37024317 TTTTGATTT
1 TTTTTATTT
37024326 TTTATTATTTT
1 TTT-TTA-TTT
37024337 TTGATTTATTT
1 TT--TTTATTT
*
37024348 TTTTTATTA
1 TTTTTATTT
37024357 TTTTTATT
1 TTTTTATT
37024365 ATTATTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
8 4 0.10
9 20 0.50
10 2 0.05
11 10 0.25
12 3 0.08
13 1 0.03
ACGTcount: A:0.14, C:0.00, G:0.04, T:0.82
Consensus pattern (9 bp):
TTTTTATTT
Found at i:37029107 original size:22 final size:22
Alignment explanation
Indices: 37029064--37029123 Score: 84
Period size: 22 Copynumber: 2.6 Consensus size: 22
37029054 CGAAGAAAAA
37029064 TGAAATAAATGATATAAAACAATT
1 TGAAATAAAT-A-ATAAAACAATT
*
37029088 TGAAATAAATAATAAGACAATT
1 TGAAATAAATAATAAAACAATT
*
37029110 TTAAATAAATAATA
1 TGAAATAAATAATA
37029124 TATATCAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 23 0.68
23 1 0.03
24 10 0.29
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (22 bp):
TGAAATAAATAATAAAACAATT
Found at i:37029579 original size:27 final size:27
Alignment explanation
Indices: 37029501--37029568 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
37029491 AAAAATATTT
* * *
37029501 AATAAATAATATGTA-AAGAAGCTT-TA
1 AATAAATAATATATAGAA-AAACTTAAA
37029527 AATAAATAATATATAGAAAAACTTAAA
1 AATAAATAATATATAGAAAAACTTAAA
*
37029554 AATAAATAATGTATA
1 AATAAATAATATATA
37029569 AAATAATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 19 0.53
27 17 0.47
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.29
Consensus pattern (27 bp):
AATAAATAATATATAGAAAAACTTAAA
Found at i:37037059 original size:18 final size:18
Alignment explanation
Indices: 37037038--37037083 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
37037028 ACAGCGCAGT
37037038 CACTAACAAGGAGCTTTG
1 CACTAACAAGGAGCTTTG
37037056 CACTAACAAGGAGCTTTG
1 CACTAACAAGGAGCTTTG
37037074 CACTAACAAG
1 CACTAACAAG
37037084 TAATTAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (18 bp):
CACTAACAAGGAGCTTTG
Found at i:37038887 original size:20 final size:21
Alignment explanation
Indices: 37038842--37038892 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
37038832 CAATTAAATT
*
37038842 TATTTAAAATAAAAAATTTTAA
1 TATTT-AAATAAAAAATTTAAA
*
37038864 -ATTTAAATTAAAAA-TTAAA
1 TATTTAAATAAAAAATTTAAA
37038883 TATTTAAATA
1 TATTTAAATA
37038893 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 4 0.16
20 17 0.68
21 4 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TATTTAAATAAAAAATTTAAA
Found at i:37039158 original size:21 final size:19
Alignment explanation
Indices: 37039119--37039169 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
37039109 TAAAAAACTT
*
37039119 AAAATTTAAAAATAATATATA
1 AAAATTGAAAAAT-AT-TATA
*
37039140 AAAATTGAAAAATGTTATA
1 AAAATTGAAAAATATTATA
37039159 AAAA-TGAAAAA
1 AAAATTGAAAAA
37039170 AGTATTTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 7 0.25
19 8 0.29
20 1 0.04
21 12 0.43
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (19 bp):
AAAATTGAAAAATATTATA
Found at i:37043921 original size:16 final size:16
Alignment explanation
Indices: 37043899--37043967 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
37043889 TTTGGTTTGC
37043899 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
37043915 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
37043931 TGTATTGAGATTAGAGG
1 TGTATTG-GATTAGAGG
37043948 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
37043964 TGTA
1 TGTA
37043968 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:37043945 original size:33 final size:32
Alignment explanation
Indices: 37043899--37043967 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
37043889 TTTGGTTTGC
37043899 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
37043931 TGTATTGAGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTG-GATTAGAGGCGTATTGGATTAGAGG
37043964 TGTA
1 TGTA
37043968 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 7 0.20
33 28 0.80
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:37044032 original size:44 final size:45
Alignment explanation
Indices: 37043948--37044038 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
37043938 AGATTAGAGG
* * *
37043948 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
37043993 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
37044037 TG
1 TG
37044039 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:37044224 original size:18 final size:17
Alignment explanation
Indices: 37044203--37044237 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37044193 TTATTATTAA
*
37044203 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37044221 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37044238 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37044344 original size:18 final size:17
Alignment explanation
Indices: 37044323--37044357 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37044313 TTATTATTAA
*
37044323 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37044341 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37044358 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37044555 original size:66 final size:66
Alignment explanation
Indices: 37044483--37044679 Score: 206
Period size: 66 Copynumber: 3.2 Consensus size: 66
37044473 GAAATTCTTA
37044483 ATAATTAATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAA
1 ATAATTAATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAA
37044548 C
66 C
* ** * * * * *
37044549 ATAATTATTATT-AAATA-TATTTTAATTAAA-C-T-ATATA--AT--T-T--AATA-AATTCTT
1 ATAATTAATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAAT-TA
37044601 A-
65 AC
37044602 ATAATTAATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAA
1 ATAATTAATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAA
37044667 C
66 C
*
37044668 ATAATTATTATT
1 ATAATTAATATT
37044680 AAATATATTT
Statistics
Matches: 99, Mismatches: 17, Indels: 30
0.68 0.12 0.21
Matches are distributed among these distances:
53 14 0.14
54 9 0.09
55 10 0.10
56 2 0.02
57 2 0.02
58 5 0.05
59 2 0.02
60 2 0.02
61 5 0.05
62 2 0.02
63 2 0.02
64 10 0.10
65 9 0.09
66 25 0.25
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (66 bp):
ATAATTAATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAA
C
Found at i:37044846 original size:359 final size:360
Alignment explanation
Indices: 37044186--37045402 Score: 2302
Period size: 359 Copynumber: 3.4 Consensus size: 360
37044176 ATCATATTTA
*
37044186 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
37044251 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
37044316 TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
37044381 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
* *
37044446 TATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
37044511 GAAATCATAATATATGATACTGTAAAATATAAATT
326 GAAATCATAATATATGATACTGTAAAATATAAATT
37044546 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAT-AAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
37044610 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
*
37044675 TTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
37044740 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
37044805 TATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
37044870 GAAATCATAATATATGATACTGTAAAATATAAATT
326 GAAATCATAATATATGATACTGTAAAATATAAATT
*
37044905 AACATAATTATTATTAAATATATTTTAATTAAA-TATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
37044969 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
*
37045034 TTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATT-TTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
*
37045098 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
37045163 TA-TTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
* *
37045227 CAAATCATAAGATATGATACTGTAAAATATAAATT
326 GAAATCATAATATATGATACTGTAAAATATAAATT
37045262 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAT-AAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
37045326 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGT-AAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
37045390 TTATTAAATATAT
131 TTATTAAATATAT
37045403 AACTTGAAAA
Statistics
Matches: 844, Mismatches: 11, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
356 34 0.04
357 188 0.22
358 113 0.13
359 463 0.55
360 46 0.05
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (360 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
TTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA
TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
TATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
GAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:37044955 original size:17 final size:17
Alignment explanation
Indices: 37044922--37044955 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37044912 TTATTATTAA
* *
37044922 ATATATTTTAATTAAAT
1 ATATAATTTAATGAAAT
37044939 ATATAATTTAATGAAAT
1 ATATAATTTAATGAAAT
37044956 TCTTAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
ATATAATTTAATGAAAT
Found at i:37045403 original size:120 final size:120
Alignment explanation
Indices: 37044186--37045402 Score: 2275
Period size: 120 Copynumber: 10.2 Consensus size: 120
37044176 ATCATATTTA
*
37044186 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
37044251 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
37044306 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
37044371 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
37044426 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
37044491 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
37044546 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAT-AAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
37044610 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
37044665 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
37044730 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
37044785 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
37044850 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
37044905 AACATAATTATTATTAAATATATTTTAATTAAA-TATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
37044969 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
37045024 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATT-TTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
37045088 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
37045143 AACATAATTATTATTAAATATA-TTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
37045207 TATTCTTATATTAATTTACTCAAATCATAAGATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
37045262 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAT-AAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
37045326 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGT-AAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
37045380 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
37045403 AACTTGAAAA
Statistics
Matches: 1082, Mismatches: 11, Indels: 10
0.98 0.01 0.01
Matches are distributed among these distances:
118 64 0.06
119 469 0.43
120 549 0.51
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:37051700 original size:13 final size:13
Alignment explanation
Indices: 37051682--37051707 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37051672 CAGCTAAACT
37051682 GAAACAGAAGGAA
1 GAAACAGAAGGAA
37051695 GAAACAGAAGGAA
1 GAAACAGAAGGAA
37051708 CAGCTAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.31, T:0.00
Consensus pattern (13 bp):
GAAACAGAAGGAA
Found at i:37051713 original size:36 final size:36
Alignment explanation
Indices: 37051672--37051750 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
37051662 GGTTGTGAAG
*
37051672 CAGCTAAACTGAAACAGAAGGAAGAAACAGAAGGAA
1 CAGCTAAACTGAAACAGAAAGAAGAAACAGAAGGAA
*
37051708 CAGCTAAACTGAAACAGAAAGAAGAAATAGAAGGAA
1 CAGCTAAACTGAAACAGAAAGAAGAAACAGAAGGAA
*
37051744 CGGCTAA
1 CAGCTAA
37051751 GTTGTGAAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.54, C:0.14, G:0.24, T:0.08
Consensus pattern (36 bp):
CAGCTAAACTGAAACAGAAAGAAGAAACAGAAGGAA
Found at i:37052351 original size:14 final size:14
Alignment explanation
Indices: 37052332--37052363 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
37052322 AACAAATATA
37052332 TATATATATATTAG
1 TATATATATATTAG
37052346 TATATATATATTAG
1 TATATATATATTAG
37052360 TATA
1 TATA
37052364 ACTAAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (14 bp):
TATATATATATTAG
Found at i:37062485 original size:27 final size:26
Alignment explanation
Indices: 37062454--37062631 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
37062444 TAAATTGTAC
37062454 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
37062481 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
37062507 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
37062535 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
37062563 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
37062590 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
37062617 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37062632 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:37062570 original size:82 final size:81
Alignment explanation
Indices: 37062455--37062610 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
37062445 AAATTGTACA
* * *
37062455 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
37062519 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37062536 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
37062601 TGCGAGTTGA
65 TGCGAATTGA
37062611 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37062622 original size:82 final size:81
Alignment explanation
Indices: 37062451--37062631 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
37062441 GATTAAATTG
* * *
37062451 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37062516 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37062532 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37062596 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37062614 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37062632 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37064145 original size:28 final size:30
Alignment explanation
Indices: 37064063--37064145 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 30
37064053 AAGTTACTCG
*
37064063 CACAAGCTGACATTATATTATGG-TTGCTCA
1 CACAAGTTGACATTATATTA-GGTTTGCTCA
*
37064093 CACAAGTTGACATTATATAAAGGTTTGC-CA
1 CACAAGTTGACATTATAT-TAGGTTTGCTCA
37064123 CACAAGTTGAC-TTATATTAGGTT
1 CACAAGTTGACATTATATTAGGTT
37064146 ACCTATCTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
28 5 0.10
29 6 0.12
30 32 0.67
31 5 0.10
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (30 bp):
CACAAGTTGACATTATATTAGGTTTGCTCA
Found at i:37069173 original size:43 final size:44
Alignment explanation
Indices: 37069054--37069208 Score: 126
Period size: 43 Copynumber: 3.6 Consensus size: 44
37069044 CGTTATCGTG
* * * *
37069054 TAAGACCATATTTGGGAT-GTTGGCATCGACT-TATGATTTACGTG
1 TAAGACCATGTCTGGGATAG-TGGCATCGA-TATTTGATTTACGTA
* *
37069098 TAAGACCATGTCTGGGACA-TCGGTATCG-TATTTGATTT-CGTA
1 TAAGACCATGTCTGGGATAGT-GGCATCGATATTTGATTTACGTA
* *
37069140 TAAGACCTTGTCTGGGATAGTGGCATCGATATTTGATTATA--TG
1 TAAGACCATGTCTGGGATAGTGGCATCGATATTTGATT-TACGTA
* * *
37069183 TAAGACCACGTCTGGGACATTGGCAT
1 TAAGACCATGTCTGGGATAGTGGCAT
37069209 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 14, Indels: 15
0.76 0.12 0.13
Matches are distributed among these distances:
42 27 0.30
43 41 0.46
44 22 0.24
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.34
Consensus pattern (44 bp):
TAAGACCATGTCTGGGATAGTGGCATCGATATTTGATTTACGTA
Found at i:37073266 original size:31 final size:31
Alignment explanation
Indices: 37073228--37073301 Score: 148
Period size: 31 Copynumber: 2.4 Consensus size: 31
37073218 CCGGGTCGGG
37073228 ACACGGGCGTGTGTGACCACACGACCTACCC
1 ACACGGGCGTGTGTGACCACACGACCTACCC
37073259 ACACGGGCGTGTGTGACCACACGACCTACCC
1 ACACGGGCGTGTGTGACCACACGACCTACCC
37073290 ACACGGGCGTGT
1 ACACGGGCGTGT
37073302 CCCATATCCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.22, C:0.36, G:0.28, T:0.14
Consensus pattern (31 bp):
ACACGGGCGTGTGTGACCACACGACCTACCC
Found at i:37077438 original size:28 final size:28
Alignment explanation
Indices: 37077358--37077439 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 28
37077348 GCATAACTTT
* * *
37077358 TGTGGAAAGTCCACTAAGGATTATCATA
1 TGTGGAAAGTCCACCAAAGATTATCTTA
* * * ** * *
37077386 TGCGGGAACTCTGCCAAAAACTATCTTA
1 TGTGGAAAGTCCACCAAAGATTATCTTA
37077414 TGTGGAAAGTCCACCAAAGATTATCT
1 TGTGGAAAGTCCACCAAAGATTATCT
37077440 CAAATGGAAT
Statistics
Matches: 37, Mismatches: 17, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (28 bp):
TGTGGAAAGTCCACCAAAGATTATCTTA
Found at i:37082747 original size:52 final size:52
Alignment explanation
Indices: 37082688--37082791 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
37082678 AATAATGATA
37082688 TGATAATAAATGTCCCGGTTGAAGTTAAAAAGGGAAATTCGATGGATAAACC
1 TGATAATAAATGTCCCGGTTGAAGTTAAAAAGGGAAATTCGATGGATAAACC
*
37082740 TGATAATAAATGTCCCGGTTGAAGTTAAAAAGGGAAATTCTATGGATAAACC
1 TGATAATAAATGTCCCGGTTGAAGTTAAAAAGGGAAATTCGATGGATAAACC
37082792 ATGACTTACA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (52 bp):
TGATAATAAATGTCCCGGTTGAAGTTAAAAAGGGAAATTCGATGGATAAACC
Found at i:37096143 original size:25 final size:24
Alignment explanation
Indices: 37096108--37096157 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 24
37096098 GTAGACACAA
*
37096108 ATATAGCTCTTTATGAGCTTCCTG
1 ATATAGCTCTTTATCAGCTTCCTG
37096132 ATATAGGCTCTTTATCAGCTTCCTG
1 ATATA-GCTCTTTATCAGCTTCCTG
37096157 A
1 A
37096158 CATGGCTTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (24 bp):
ATATAGCTCTTTATCAGCTTCCTG
Found at i:37098219 original size:42 final size:42
Alignment explanation
Indices: 37098160--37098279 Score: 168
Period size: 43 Copynumber: 2.8 Consensus size: 42
37098150 GGGTTAGTTA
37098160 AGATTACGTGTAAGACCATATCTGGGATATTGCATCGATATG
1 AGATTACGTGTAAGACCATATCTGGGATATTGCATCGATATG
* * *
37098202 AGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATATG
1 AGATTACGTGTAAGACCATATCTGGGATATT-GCATCGATATG
** * *
37098245 AGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 AGATTACGTGTAAGACCATATCTGGGATATTGCAT
37098280 TGGTATGGTA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATTGCATCGATATG
Found at i:37101019 original size:46 final size:46
Alignment explanation
Indices: 37100952--37101123 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
37100942 AACCCGCCCC
* * *
37100952 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
* * *
37100998 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTT-G-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCATTCGCATCCA
* * *
37101044 TTTCA-TGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
37101091 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
37101124 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
45 5 0.05
46 63 0.59
47 32 0.30
48 6 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
Found at i:37101064 original size:93 final size:93
Alignment explanation
Indices: 37100956--37101127 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
37100946 CGCCCCTAAG
* *
37100956 TGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37101021 ACGAGTTCGGATGCCTTGTTACATTTCA
66 ACGAGTTCGGATGCCTTGTTACATTTCA
* * *
37101049 TGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37101114 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
37101128 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTTGTTACATTTCA
Found at i:37107763 original size:38 final size:38
Alignment explanation
Indices: 37107712--37107791 Score: 151
Period size: 38 Copynumber: 2.1 Consensus size: 38
37107702 AAGCAGAGTT
*
37107712 GATTGCAGGCCTAGAGATAGGGTGATAAGATTTTGCCA
1 GATTGCACGCCTAGAGATAGGGTGATAAGATTTTGCCA
37107750 GATTGCACGCCTAGAGATAGGGTGATAAGATTTTGCCA
1 GATTGCACGCCTAGAGATAGGGTGATAAGATTTTGCCA
37107788 GATT
1 GATT
37107792 AGGGTGAAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.28
Consensus pattern (38 bp):
GATTGCACGCCTAGAGATAGGGTGATAAGATTTTGCCA
Found at i:37115892 original size:25 final size:25
Alignment explanation
Indices: 37115855--37115965 Score: 134
Period size: 25 Copynumber: 4.4 Consensus size: 25
37115845 CCACAACTCT
* *
37115855 TGAGAGCACACCGGTTTACAGCTCG
1 TGAGAGCATACCGATTTACAGCTCG
*
37115880 TGAGAACATACCGATTTACAGCTCG
1 TGAGAGCATACCGATTTACAGCTCG
*
37115905 TGAGAGCATACCGATTTACAGTTCG
1 TGAGAGCATACCGATTTACAGCTCG
* * * *
37115930 GGTGAGCATACCGATTCATAGCTCG
1 TGAGAGCATACCGATTTACAGCTCG
37115955 T-ATGAGCATAC
1 TGA-GAGCATAC
37115966 ATGTACAAGA
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
25 73 1.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (25 bp):
TGAGAGCATACCGATTTACAGCTCG
Found at i:37122052 original size:14 final size:15
Alignment explanation
Indices: 37122026--37122058 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
37122016 CTTAATAAGT
37122026 AAATGGATTAAGTAA
1 AAATGGATTAAGTAA
37122041 AAATGG-TTAAGTAA
1 AAATGGATTAAGTAA
37122055 AAAT
1 AAAT
37122059 CGGGATTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.18, T:0.27
Consensus pattern (15 bp):
AAATGGATTAAGTAA
Found at i:37127447 original size:45 final size:45
Alignment explanation
Indices: 37127383--37127476 Score: 170
Period size: 45 Copynumber: 2.1 Consensus size: 45
37127373 CTCACTAAAA
*
37127383 TTCAAATATATCTTAATATACACTTCTTTTGTTTACTCTATTTCT
1 TTCAAATATATCTTAATATACACTTCTTTTGCTTACTCTATTTCT
*
37127428 TTCAAATATATCTTAATATACGCTTCTTTTGCTTACTCTATTTCT
1 TTCAAATATATCTTAATATACACTTCTTTTGCTTACTCTATTTCT
37127473 TTCA
1 TTCA
37127477 TACGAAAATA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.26, C:0.19, G:0.03, T:0.52
Consensus pattern (45 bp):
TTCAAATATATCTTAATATACACTTCTTTTGCTTACTCTATTTCT
Found at i:37128454 original size:55 final size:54
Alignment explanation
Indices: 37128341--37128531 Score: 235
Period size: 55 Copynumber: 3.5 Consensus size: 54
37128331 AACTTACCAT
* * * * *
37128341 TGCCATGTCTTGACATGGTCTTACGTGGT-ATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGA-CCTTGCCTTATAGAACTCATCAA
*
37128394 TGCCATGCCTTGGCATGGTATTACATGA-GACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGACC-TTGCCTTATAG-AACTCATCAA
* * ** *
37128449 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGACCTTGCCTTATAGAACTCATCAA
37128503 TGCCATGCCTTGGCATGGTCTTACATGAT
1 TGCCATGCCTTGGCATGGTCTTACATGAT
37128532 ATCCTTATCT
Statistics
Matches: 119, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
52 2 0.02
53 33 0.28
54 37 0.31
55 45 0.38
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGATGACCTTGCCTTATAGAACTCATCAA
Found at i:37128569 original size:47 final size:47
Alignment explanation
Indices: 37128516--37128684 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
37128506 CATGCCTTGG
37128516 CATGGTCTTACATGATATCCTTATCTTACCAACTGCCATGATCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAACTGCCATGATCCAAA
37128563 CATGGTCTTACATGATATCCTTATCTTACCAACTGCCATGATCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAACTGCCATGATCCAAA
* * * *
37128610 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAACTGCCATGATCCAAA
* *
37128657 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
37128685 GTGCCAATGC
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAACTGCCATGATCCAAA
Found at i:37128751 original size:47 final size:47
Alignment explanation
Indices: 37128511--37128819 Score: 143
Period size: 47 Copynumber: 6.6 Consensus size: 47
37128501 AATGCCATGC
* * * *
37128511 CTTGGCATGGTCTTACATGATATCCTTATCT--TACCAACTGCCATGAT
1 CTTGACATGGTCTTACATGGTATCCTTATCTAGTGCCAA-TGCCA-CAT
*** * * *
37128558 CCAAACATGGTCTTACATGATATCCTTATCT--TACCAACTGCCATGAT
1 CTTGACATGGTCTTACATGGTATCCTTATCTAGTGCCAA-TGCCA-CAT
*** * * **
37128605 CCAAACATGGTCTTACATGGTATCCTTGTCT--TACCAAATGCCATGTT
1 CTTGACATGGTCTTACATGGTATCCTTATCTAGTGCC-AATGCCA-CAT
*** *
37128652 CCAAACATGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGCCACAT
1 CTTGACATGGTCTTACATGGTATCCTTATC-TAGTGCCAATGCCACAT
** * **
37128700 CTTGATGTGGTCTTACATGG-AGTCCTTAATC-AGTGCCGATGCCATGT
1 CTTGACATGGTCTTACATGGTA-TCCTT-ATCTAGTGCCAATGCCACAT
* * ** * * * **
37128747 CTTGACATGGTCTTACACGGGATCCTTGCCT-G-ACCAGTGCTATGT
1 CTTGACATGGTCTTACATGGTATCCTTATCTAGTGCCAATGCCACAT
*
37128792 CTTGACGTGGTCTTACATGGTATCCTTA
1 CTTGACATGGTCTTACATGGTATCCTTA
37128820 ACCGTTAATT
Statistics
Matches: 222, Mismatches: 32, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
45 33 0.15
46 2 0.01
47 150 0.68
48 25 0.11
49 9 0.04
50 3 0.01
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (47 bp):
CTTGACATGGTCTTACATGGTATCCTTATCTAGTGCCAATGCCACAT
Found at i:37132701 original size:27 final size:27
Alignment explanation
Indices: 37132671--37132848 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37132661 ATATTGAGTC
* * * *
37132671 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37132698 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37132725 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37132753 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37132780 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37132807 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37132834 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37132849 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37132810 original size:82 final size:81
Alignment explanation
Indices: 37132692--37132847 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37132682 TGCTATATAA
* *
37132692 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37132757 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37132774 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37132838 CACTTAGTGC
65 CACTTAGTGC
37132848 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37140874 original size:27 final size:27
Alignment explanation
Indices: 37140844--37141021 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37140834 ATATTGAGTC
* * * *
37140844 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37140871 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37140898 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37140926 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37140953 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37140980 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37141007 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37141022 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37140983 original size:82 final size:81
Alignment explanation
Indices: 37140865--37141020 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37140855 TGCTATATAA
* *
37140865 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37140930 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37140947 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37141011 CACTTAGTGC
65 CACTTAGTGC
37141021 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37149000 original size:27 final size:27
Alignment explanation
Indices: 37148951--37149137 Score: 142
Period size: 27 Copynumber: 6.6 Consensus size: 27
37148941 ATATTGAGTC
* *
37148951 CGCACACTCCAGTGCTATATAATCAACT
1 CGCACACT-TAGTGCTACATAATCAACT
* *
37148979 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
37149006 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** **
37149034 CGCACACTTAGTGCCGCATGGTCAACTT
1 CGCACACTTAGTGCTACATAATCAAC-T
**
37149062 CGGCACACTTAGTGGC-ATCATATATTCATTT
1 C-GCACACTTAGT-GCTA-CATA-A-TCAACT
* * *
37149093 CGCACACTTACGTGCAACATAGTTCCAAAT
1 CGCACACTTA-GTGCTACATA-AT-CAACT
37149123 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37149138 GTACAATTTA
Statistics
Matches: 129, Mismatches: 20, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
27 39 0.30
28 33 0.26
29 16 0.12
30 33 0.26
31 5 0.04
32 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37149075 original size:29 final size:28
Alignment explanation
Indices: 37148975--37149136 Score: 125
Period size: 28 Copynumber: 5.6 Consensus size: 28
37148965 CTATATAATC
* * *
37148975 AACTCGCACACTTAGTGCTACGTAATCA
1 AACTCGCACACTTAGTGCCACATAGTCA
*
37149003 AA-TCGCACACTTAGTGCTACATAGTCA
1 AACTCGCACACTTAGTGCCACATAGTCA
* *
37149030 AACTCGCACACTTAGTGCCGCATGGTC-
1 AACTCGCACACTTAGTGCCACATAGTCA
* *
37149057 AACTTCGGCACACTTAGTGGCATCATATATTC-
1 AAC-TC-GCACACTTAGT-GC--CACATAGTCA
** *
37149089 ATTTCGCACACTTACGTGCAACATAGTTCCA
1 AACTCGCACACTTA-GTGCCACATAG-T-CA
37149120 AA-TCGCACACTTAGTGC
1 AACTCGCACACTTAGTGC
37149137 TGTACAATTT
Statistics
Matches: 109, Mismatches: 15, Indels: 19
0.76 0.10 0.13
Matches are distributed among these distances:
27 28 0.26
28 29 0.27
29 16 0.15
30 25 0.23
31 5 0.05
32 6 0.06
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (28 bp):
AACTCGCACACTTAGTGCCACATAGTCA
Found at i:37149126 original size:30 final size:28
Alignment explanation
Indices: 37148973--37149136 Score: 127
Period size: 30 Copynumber: 5.7 Consensus size: 28
37148963 TGCTATATAA
* * * *
37148973 TCAACTCGCACACTTAGTGCTACGTA-A
1 TCAAATCGCACACTTAGTGCAACATAGT
*
37149000 TCAAATCGCACACTTAGTGCTACATAG-
1 TCAAATCGCACACTTAGTGCAACATAGT
** *
37149027 TCAAACTCGCACACTTAGTGCCGCAT-GG
1 TCAAA-TCGCACACTTAGTGCAACATAGT
* * *
37149055 TCAACTTCGGCACACTTAGTGGCATCATATAT
1 TCAA-ATC-GCACACTTAGT-GCAACATA-GT
**
37149087 TCATTTCGCACACTTACGTGCAACATAGT
1 TCAAATCGCACACTTA-GTGCAACATAGT
37149116 TCCAAATCGCACACTTAGTGC
1 T-CAAATCGCACACTTAGTGC
37149137 TGTACAATTT
Statistics
Matches: 113, Mismatches: 14, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
27 30 0.27
28 24 0.21
29 17 0.15
30 34 0.30
31 5 0.04
32 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TCAAATCGCACACTTAGTGCAACATAGT
Found at i:37162489 original size:12 final size:12
Alignment explanation
Indices: 37162474--37162503 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37162464 ACAATAATAC
37162474 TATATATAAATG
1 TATATATAAATG
*
37162486 TATATATATATG
1 TATATATAAATG
37162498 TATATA
1 TATATA
37162504 ATAGAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (12 bp):
TATATATAAATG
Found at i:37162621 original size:18 final size:18
Alignment explanation
Indices: 37162579--37162625 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
37162569 AATTAAAGTA
*
37162579 ATAAAAA-ATAATACTAT
1 ATAAAAATATAATACTAC
37162596 ATATAAAATATATATAC-AC
1 ATA-AAAATATA-ATACTAC
37162615 ATAAAAATATA
1 ATAAAAATATA
37162626 CACTAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 3 0.12
18 12 0.46
19 7 0.27
20 4 0.15
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (18 bp):
ATAAAAATATAATACTAC
Found at i:37162857 original size:3 final size:3
Alignment explanation
Indices: 37162844--37162929 Score: 60
Period size: 3 Copynumber: 29.3 Consensus size: 3
37162834 GAGGGCATAT
37162844 ATA AT- ATA ATA ATA AT- ATA A-A A-A ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA
* *
37162888 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
37162930 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 13 0.19
3 46 0.68
4 7 0.10
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:37162870 original size:18 final size:18
Alignment explanation
Indices: 37162849--37162929 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
37162839 CATATATAAT
37162849 ATAATAATAATATAAAAA
1 ATAATAATAATATAAAAA
* *
37162867 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-ATAAAAA
*
37162888 ATAATAATAATATAAATA
1 ATAATAATAATATAAAAA
*
37162906 ATAGTAA-AA-ATAATAAA
1 ATAATAATAATATAA-AAA
37162923 ATAATAA
1 ATAATAA
37162930 AACAAAGCTC
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
16 4 0.08
17 10 0.19
18 18 0.34
19 5 0.09
20 5 0.09
21 11 0.21
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (18 bp):
ATAATAATAATATAAAAA
Found at i:37163298 original size:23 final size:23
Alignment explanation
Indices: 37163260--37163331 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 23
37163250 CCTTTTTTAC
*
37163260 AAAAAAA-CACCT-CAAAAAACA
1 AAAAAAACCTCCTCCAAAAAACA
37163281 AAAAAAACCTCCTCC--AAAACA
1 AAAAAAACCTCCTCCAAAAAACA
* * *
37163302 AAGAACAATCCTTCTCCAAAAAACC
1 AA-AA-AAACCTCCTCCAAAAAACA
37163327 AAAAA
1 AAAAA
37163332 CCCACCCCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
21 15 0.37
22 6 0.15
23 11 0.27
24 2 0.05
25 7 0.17
ACGTcount: A:0.61, C:0.28, G:0.01, T:0.10
Consensus pattern (23 bp):
AAAAAAACCTCCTCCAAAAAACA
Done.