Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 123 of 295
Found at i:37163299 original size:21 final size:23
Alignment explanation
Indices: 37163275--37163322 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
37163265 AACACCTCAA
37163275 AAAACAAA-AA-AAACCTCCTCC
1 AAAACAAAGAACAAACCTCCTCC
* *
37163296 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAAACCTCCTCC
37163319 AAAA
1 AAAA
37163323 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 2 0.09
23 13 0.57
ACGTcount: A:0.56, C:0.29, G:0.02, T:0.12
Consensus pattern (23 bp):
AAAACAAAGAACAAACCTCCTCC
Found at i:37163430 original size:22 final size:23
Alignment explanation
Indices: 37163405--37163466 Score: 94
Period size: 22 Copynumber: 2.8 Consensus size: 23
37163395 GGGTGGTTTA
*
37163405 GGTGGCCAAGGGT-GGTGGAGTT
1 GGTGGCTAAGGGTGGGTGGAGTT
37163427 GGTGGCTAA-GGTGGGTGGAGTT
1 GGTGGCTAAGGGTGGGTGGAGTT
37163449 GGTGGCTAA-GGTGGGTGG
1 GGTGGCTAAGGGTGGGTGG
37163467 CCAACAAAGG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 3 0.08
22 35 0.92
ACGTcount: A:0.13, C:0.06, G:0.56, T:0.24
Consensus pattern (23 bp):
GGTGGCTAAGGGTGGGTGGAGTT
Found at i:37163509 original size:4 final size:4
Alignment explanation
Indices: 37163500--37163525 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
37163490 GGCCAAGGTT
37163500 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
37163526 GTGTTTGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:37167323 original size:22 final size:20
Alignment explanation
Indices: 37167291--37167331 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
37167281 GCAACGAACA
37167291 AAAAAATAACAAAAAAATTG
1 AAAAAATAACAAAAAAATTG
*
37167311 AAAAAATCGAACACAAAAATT
1 AAAAAAT--AACAAAAAAATT
37167332 TTACGTAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.71, C:0.10, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAAAATAACAAAAAAATTG
Found at i:37170870 original size:21 final size:21
Alignment explanation
Indices: 37170846--37170900 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
37170836 GTCAATATTT
37170846 ACTTTAATTAAGTTATTTACC
1 ACTTTAATTAAGTTATTTACC
*
37170867 ACTTTAATTGAGTTATTTACC
1 ACTTTAATTAAGTTATTTACC
*
37170888 ACTCTTAACTAAG
1 ACT-TTAATTAAG
37170901 AATACCCTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 23 0.77
22 7 0.23
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.44
Consensus pattern (21 bp):
ACTTTAATTAAGTTATTTACC
Found at i:37171101 original size:19 final size:21
Alignment explanation
Indices: 37171074--37171113 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
37171064 AAATTTTAGC
37171074 TTCTCCCCAAAAGT-TTTTTT
1 TTCTCCCCAAAAGTGTTTTTT
*
37171094 TTCT-CCCAAAGGTGTTTTTT
1 TTCTCCCCAAAAGTGTTTTTT
37171114 CAAGCAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.17, C:0.23, G:0.10, T:0.50
Consensus pattern (21 bp):
TTCTCCCCAAAAGTGTTTTTT
Found at i:37176587 original size:14 final size:14
Alignment explanation
Indices: 37176568--37176597 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
37176558 CATTCCGAAG
37176568 TATATATATATACA
1 TATATATATATACA
37176582 TATATATATATACA
1 TATATATATATACA
37176596 TA
1 TA
37176598 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATATATATACA
Found at i:37177126 original size:27 final size:28
Alignment explanation
Indices: 37177042--37177139 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
37177032 CATGAGATTG
* * * *
37177042 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
37177071 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
37177099 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
37177126 GAACTGAGTGTGCG
1 GCACTAAGTGTGCG
37177140 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
29 18 0.29
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37177150 original size:27 final size:27
Alignment explanation
Indices: 37177073--37177152 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
37177063 ATTGTACAGC
* * *
37177073 ACTAAGTGTGCGAGTTTGATTATATAGC
1 ACTAAGTGTGCGA-CTTGAATATATAGA
* *
37177101 ACTAAGTGTGCGAGTTGATTATATAGA
1 ACTAAGTGTGCGACTTGAATATATAGA
*
37177128 ACTGAGTGTGCGGACTT-AATATATA
1 ACTAAGTGTGC-GACTTGAATATATA
37177153 CTTTTGAATC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 29 0.63
28 17 0.37
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (27 bp):
ACTAAGTGTGCGACTTGAATATATAGA
Found at i:37193264 original size:40 final size:40
Alignment explanation
Indices: 37193204--37193282 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
37193194 TTTTCAAAGC
*
37193204 CTAAAATAGGCATTGGAGAAGAAGTAATATTCAGTCAATA
1 CTAAAATAGGCATTGCAGAAGAAGTAATATTCAGTCAATA
37193244 CTAAAATAGGCATTGCAGAAGAAGTAATATTCAGTCAAT
1 CTAAAATAGGCATTGCAGAAGAAGTAATATTCAGTCAAT
37193283 CTTCCTTGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.25
Consensus pattern (40 bp):
CTAAAATAGGCATTGCAGAAGAAGTAATATTCAGTCAATA
Found at i:37195998 original size:43 final size:42
Alignment explanation
Indices: 37195914--37196040 Score: 148
Period size: 43 Copynumber: 2.9 Consensus size: 42
37195904 CGGGCCTCGA
* *
37195914 CCTAGCAAGCTTTAA-GCTGGTGAATAATATTATCGAGCTTCGGG
1 CCTAGCAAGCTATAATGCTGGTGAAT-A-A-TATCGGGCTTCGGG
37195958 CCTAGCAAGCTATAATGCTGGTGAGATAATATCGGGCTTCGGG
1 CCTAGCAAGCTATAATGCTGGTGA-ATAATATCGGGCTTCGGG
* * * *
37196001 CCTAGCAGGCTATATTGCCGGTGAAATGATATCGGGCTTC
1 CCTAGCAAGCTATAATGCTGGTG-AATAATATCGGGCTTC
37196041 AAGCCTAGTA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
43 47 0.64
44 16 0.22
45 9 0.12
46 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (42 bp):
CCTAGCAAGCTATAATGCTGGTGAATAATATCGGGCTTCGGG
Found at i:37211984 original size:116 final size:116
Alignment explanation
Indices: 37211780--37212009 Score: 406
Period size: 116 Copynumber: 2.0 Consensus size: 116
37211770 ATAATTGTAG
* *
37211780 TGATACCTTTTTTATGCATTGATACTCTAATATAAAATATTGATACTTTAGTCTGGAATCTTGAG
1 TGATAACTTTTTTATGCATTGATACTCTAATATAAAATATTGATACTTTAGTCTAGAATCTTGAG
*
37211845 ATTCTGTTTCTTAAAAATTTTCTTGAAAAGTGCTAAGTATCGATACCCTTA
66 ATTCTATTTCTTAAAAATTTTCTTGAAAAGTGCTAAGTATCGATACCCTTA
* *
37211896 TGATAACTTTTTTATGCATTGATACTCTAATATAAAGTATTGATACTTTAGTCTAGTATCTTGAG
1 TGATAACTTTTTTATGCATTGATACTCTAATATAAAATATTGATACTTTAGTCTAGAATCTTGAG
*
37211961 ATTCTATTTCTTAAAAATTTTCTTGAAAAGTGCTCAGTATCGATACCCT
66 ATTCTATTTCTTAAAAATTTTCTTGAAAAGTGCTAAGTATCGATACCCT
37212010 AGTAAGGGTA
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 108 1.00
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.43
Consensus pattern (116 bp):
TGATAACTTTTTTATGCATTGATACTCTAATATAAAATATTGATACTTTAGTCTAGAATCTTGAG
ATTCTATTTCTTAAAAATTTTCTTGAAAAGTGCTAAGTATCGATACCCTTA
Found at i:37217264 original size:26 final size:26
Alignment explanation
Indices: 37217235--37217284 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
37217225 TAATAAAATA
37217235 AAAAT-TATTAAAAACATAAAATTTAT
1 AAAATCTATTAAAAA-ATAAAATTTAT
* *
37217261 AAAATCTATTTAATAATAAAATTT
1 AAAATCTATTAAAAAATAAAATTT
37217285 CTAATAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 14 0.67
27 7 0.33
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (26 bp):
AAAATCTATTAAAAAATAAAATTTAT
Found at i:37242275 original size:37 final size:37
Alignment explanation
Indices: 37242214--37242366 Score: 261
Period size: 37 Copynumber: 4.1 Consensus size: 37
37242204 TTATTACGAA
* * * * *
37242214 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
37242251 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
37242288 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
37242325 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
37242362 GTCTT
1 GTCTT
37242367 TAGAGCTCGG
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 111 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:37242563 original size:47 final size:47
Alignment explanation
Indices: 37242485--37242848 Score: 586
Period size: 47 Copynumber: 7.7 Consensus size: 47
37242475 CCCTTCGGGA
* * * * * *
37242485 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37242532 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37242579 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37242626 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37242673 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37242720 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37242767 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37242814 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
37242849 AGAATCCTAA
Statistics
Matches: 297, Mismatches: 19, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 296 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37246239 original size:40 final size:40
Alignment explanation
Indices: 37246194--37246352 Score: 165
Period size: 40 Copynumber: 4.0 Consensus size: 40
37246184 CGAATACACG
* * * *
37246194 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* * *** *
37246234 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* ** * *
37246274 TCACTAGCACGAATGCTCTTTAGAACTTAGTCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* *
37246314 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAT
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATAT
37246353 GGTCACTTAG
Statistics
Matches: 99, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
Found at i:37246382 original size:40 final size:40
Alignment explanation
Indices: 37246208--37246389 Score: 129
Period size: 40 Copynumber: 4.5 Consensus size: 40
37246198 CAGCATGATT
* * * * * * *
37246208 GCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAAT
1 GCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAAA
* *** * *
37246248 GCTCTTTGGGGTTTAG-CACGGATATATCACTAGCACGAAT
1 GCTCTTCGGAACTTAGTC-CGGATACATCACTAGCACGAAA
** *
37246288 GCTCTTTAGAACTTAGTCCGGATACATCACTAGCACGAAT
1 GCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAAA
**
37246328 GCTCTTCGGAACTTAGTCCGGATATGGTCACTTAGCAC-AAA
1 GCTCTTCGGAACTTAGTCCGGATA-CATCAC-TAGCACGAAA
*
37246369 GC-CTTCAGG-ACTTAGCCCGGA
1 GCTCTTC-GGAACTTAGTCCGGA
37246390 CATCATTCAA
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 102 0.85
41 11 0.09
42 6 0.05
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
GCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAAA
Found at i:37246382 original size:80 final size:80
Alignment explanation
Indices: 37246208--37246389 Score: 190
Period size: 80 Copynumber: 2.3 Consensus size: 80
37246198 CAGCATGATT
* * * * ***
37246208 GCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATAT
1 GCTCTTCAGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATAT
*
37246273 ATCACTAGCACGAAT
66 ATCACTAGCACGAAA
* * * * *
37246288 GCTCTTTAGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC-CGGATA
1 GCTCTTCAGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAG-CACGGATA
*
37246352 TGGTCACTTAGCAC-AAA
65 T-ATCAC-TAGCACGAAA
37246369 GC-CTTCAGGACTTAGCCCGGA
1 GCTCTTCAGGACTTAGCCCGGA
37246390 CATCATTCAA
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
80 67 0.82
81 9 0.11
82 6 0.07
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
GCTCTTCAGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATAT
ATCACTAGCACGAAA
Found at i:37246736 original size:29 final size:29
Alignment explanation
Indices: 37246697--37246775 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
37246687 CTTAATAATC
*
37246697 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
37246727 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
37246756 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37246776 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:37260047 original size:40 final size:40
Alignment explanation
Indices: 37259999--37260301 Score: 515
Period size: 40 Copynumber: 7.7 Consensus size: 40
37259989 GCAAACACAT
* *
37259999 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37260039 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37260079 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37260119 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37260159 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37260199 TTGCCTTC-GGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37260238 TTGCCTTCGGGTCATAGCCCGG--ATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37260276 TTG-CTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
37260302 ATCCAATGCC
Statistics
Matches: 250, Mismatches: 10, Indels: 7
0.94 0.04 0.03
Matches are distributed among these distances:
37 17 0.07
38 18 0.07
39 41 0.16
40 174 0.70
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:37267983 original size:40 final size:40
Alignment explanation
Indices: 37267935--37268161 Score: 382
Period size: 40 Copynumber: 5.7 Consensus size: 40
37267925 GCAAACACAT
* *
37267935 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37267975 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
37268015 TTGCCTTTGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
37268055 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
37268095 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
37268135 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
37268162 ATCCAATGCT
Statistics
Matches: 173, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 173 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:37270587 original size:37 final size:37
Alignment explanation
Indices: 37270537--37270657 Score: 242
Period size: 37 Copynumber: 3.3 Consensus size: 37
37270527 GCTGTCACAT
37270537 ATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTC
1 ATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTC
37270574 ATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTC
1 ATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTC
37270611 ATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTC
1 ATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTC
37270648 ATCGGGTCTT
1 ATCGGGTCTT
37270658 TAGAGCTCGG
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 84 1.00
ACGTcount: A:0.26, C:0.34, G:0.20, T:0.21
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACAAAATCCCCACACGTAGTC
Found at i:37270854 original size:47 final size:47
Alignment explanation
Indices: 37270776--37271134 Score: 541
Period size: 47 Copynumber: 7.7 Consensus size: 47
37270766 CCCTTCGGGA
* * * * * *
37270776 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37270823 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37270870 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37270917 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37270964 CTTAT--C--A-ATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37271006 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37271053 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37271100 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
37271135 AGAATCCTAA
Statistics
Matches: 287, Mismatches: 19, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
42 39 0.14
43 1 0.00
44 1 0.00
45 1 0.00
46 2 0.01
47 243 0.85
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37271025 original size:136 final size:138
Alignment explanation
Indices: 37270776--37271105 Score: 522
Period size: 136 Copynumber: 2.4 Consensus size: 138
37270766 CCCTTCGGGA
* * * * * *
37270776 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCA-CATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCT-T-ATCA-ATATACA
37270840 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
62 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
*
37270905 CGGTCATTAGGC
127 CGGCCATTAGGC
37270917 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC-A-ATACACTTT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATACACTTT
* *
37270980 CACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
37271045 CATTAGGC
131 CATTAGGC
37271053 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
37271106 TCATATATGC
Statistics
Matches: 179, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
136 132 0.74
137 1 0.01
138 1 0.01
139 2 0.01
140 3 0.02
141 40 0.22
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (138 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTAGGC
Found at i:37271098 original size:183 final size:183
Alignment explanation
Indices: 37270788--37271134 Score: 561
Period size: 183 Copynumber: 1.9 Consensus size: 183
37270778 TATCACATTT
* * * *
37270788 ATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCAT
*
37270853 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
37270918 TTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 TTATCACATATATACA-TGTTCACATCCATCACATCGGCCATTAGGCCTTATCA
* * * *
37270971 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCAT
*
37271036 CACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
37271101 TTATCTCATATATGCATGTTCACATCCATCACAT
131 TTATCACATATATACATGTTCACATCCATCACAT
37271135 AGAATCCTAA
Statistics
Matches: 150, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
182 1 0.01
183 149 0.99
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (183 bp):
ATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACATATATACATGTTCACATCCATCACATCGGCCATTAGGCCTTATCA
Found at i:37275757 original size:23 final size:23
Alignment explanation
Indices: 37275640--37275789 Score: 123
Period size: 23 Copynumber: 6.6 Consensus size: 23
37275630 TCAGCTCGTA
37275640 AGAGCTTACTGTTTTCAGCTC-AT
1 AGAGCTTACTG-TTTCAGCTCAAT
* * * *
37275663 TGAAGCTTACCGTTTTAGCTC-CT
1 AG-AGCTTACTGTTTCAGCTCAAT
*
37275686 ATGAGCTTTCTG-TTCAGCTCGAA-
1 A-GAGCTTACTGTTTCAGCTC-AAT
*
37275709 AGAGCTTGCTG-TTCAGCTCGAA-
1 AGAGCTTACTGTTTCAGCTC-AAT
*
37275731 AGAGCTTACTGTATCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
37275754 AGAGCTTACCGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
* *
37275777 AGAGATTATTGTT
1 AGAGCTTACTGTT
37275790 CATTAGCTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
22 39 0.38
23 56 0.54
24 9 0.09
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:37280528 original size:28 final size:29
Alignment explanation
Indices: 37280486--37280599 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
37280476 TACTTGTATT
* *
37280486 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
37280514 TGGCCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAGGCCCAAATCACATT-CATA
*
37280543 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
37280572 TGGCCCGTTATGCCC-AATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
37280600 ATCATGCTCA
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
28 28 0.36
29 47 0.61
30 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:37280547 original size:57 final size:57
Alignment explanation
Indices: 37280477--37280592 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 57
37280467 AATTTCACAT
* *
37280477 ACTTGTATTTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACTTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCC-AATC
* * * *
37280534 ACTTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTATGCCCAATC
1 ACTTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAATC
37280591 AC
1 AC
37280593 ATTCATAATC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 28 0.54
58 24 0.46
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (57 bp):
ACTTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAATC
Found at i:37280842 original size:15 final size:15
Alignment explanation
Indices: 37280819--37280851 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
37280809 ACTTTCGACT
*
37280819 TTTCGGCATTTCGGC
1 TTTCAGCATTTCGGC
37280834 TTTCAGCATTTCGGC
1 TTTCAGCATTTCGGC
37280849 TTT
1 TTT
37280852 TACCGATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.45
Consensus pattern (15 bp):
TTTCAGCATTTCGGC
Found at i:37293115 original size:49 final size:49
Alignment explanation
Indices: 37293043--37293141 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
37293033 AGGGATTATA
37293043 TGCTTGTGTATTCCAAAAAAGGTCTTACTCTTTTCGGTTCTATAGATTC
1 TGCTTGTGTATTCCAAAAAAGGTCTTACTCTTTTCGGTTCTATAGATTC
37293092 TGCTTGTGTATTCCAAAAAAGGTCTTACTCTTTTCGGTTCTATAGATTC
1 TGCTTGTGTATTCCAAAAAAGGTCTTACTCTTTTCGGTTCTATAGATTC
37293141 T
1 T
37293142 AACTTCCAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.43
Consensus pattern (49 bp):
TGCTTGTGTATTCCAAAAAAGGTCTTACTCTTTTCGGTTCTATAGATTC
Found at i:37294402 original size:9 final size:9
Alignment explanation
Indices: 37294386--37294419 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
37294376 TTTAATTGGA
37294386 AATTAATTT
1 AATTAATTT
*
37294395 AGTTAATTT
1 AATTAATTT
*
37294404 AATTAATTA
1 AATTAATTT
37294413 AATTAAT
1 AATTAAT
37294420 AGAATAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (9 bp):
AATTAATTT
Found at i:37296475 original size:18 final size:17
Alignment explanation
Indices: 37296448--37296484 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
37296438 ACTAAGTAAA
37296448 AATAATATAAAATTTAT
1 AATAATATAAAATTTAT
*
37296465 AATATATATAACATTTAT
1 AATA-ATATAAAATTTAT
37296483 AA
1 AA
37296485 AAAAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
AATAATATAAAATTTAT
Found at i:37298032 original size:22 final size:22
Alignment explanation
Indices: 37298007--37298078 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
37297997 CATTTCATAG
*
37298007 CATATCATGTATCATGTCAGAA
1 CATATCATATATCATGTCAGAA
* *
37298029 CATATCATATCA-CATGTCATAG
1 CATATCATAT-ATCATGTCAGAA
* * *
37298051 CATATCATATTTCATATTAGAA
1 CATATCATATATCATGTCAGAA
37298073 CATATC
1 CATATC
37298079 TTATCACATA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
22 39 0.98
23 1 0.03
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (22 bp):
CATATCATATATCATGTCAGAA
Found at i:37298049 original size:44 final size:44
Alignment explanation
Indices: 37297996--37298101 Score: 149
Period size: 44 Copynumber: 2.4 Consensus size: 44
37297986 ATACTAAGTA
* * *
37297996 ACATTTCATAGCATATCATGTATCATGTCAGAACATATCATATC
1 ACATATCATAGCATATCATATATCATATCAGAACATATCATATC
* * * *
37298040 ACATGTCATAGCATATCATATTTCATATTAGAACATATCTTATC
1 ACATATCATAGCATATCATATATCATATCAGAACATATCATATC
37298084 ACATATCATAGCATATCA
1 ACATATCATAGCATATCA
37298102 AATCCTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.35
Consensus pattern (44 bp):
ACATATCATAGCATATCATATATCATATCAGAACATATCATATC
Found at i:37298088 original size:22 final size:22
Alignment explanation
Indices: 37298023--37298101 Score: 77
Period size: 22 Copynumber: 3.6 Consensus size: 22
37298013 ATGTATCATG
*
37298023 TCAGAACATATCATATCACATG
1 TCAGAACATATCATATCACATA
* * **
37298045 TCATAGCATATCATATTTCATA
1 TCAGAACATATCATATCACATA
* *
37298067 TTAGAACATATCTTATCACATA
1 TCAGAACATATCATATCACATA
* *
37298089 TCATAGCATATCA
1 TCAGAACATATCA
37298102 AATCCTACCC
Statistics
Matches: 42, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.39, C:0.20, G:0.06, T:0.34
Consensus pattern (22 bp):
TCAGAACATATCATATCACATA
Found at i:37299832 original size:93 final size:93
Alignment explanation
Indices: 37299720--37299891 Score: 326
Period size: 93 Copynumber: 1.8 Consensus size: 93
37299710 CGCCCATAAG
*
37299720 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37299785 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
37299813 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37299878 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
37299892 TCAACCATCC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:37299888 original size:46 final size:46
Alignment explanation
Indices: 37299713--37299888 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
37299703 TGTAACCCGC
* *
37299713 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
37299759 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
37299809 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37299852 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
37299889 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37319228 original size:14 final size:14
Alignment explanation
Indices: 37319171--37319230 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
37319161 TTGTGTTCCT
*
37319171 TGGACTTTTATGTA
1 TGGACTTGTATGTA
*
37319185 TGTACTTGTATGTA
1 TGGACTTGTATGTA
* * * *
37319199 TGAAATAAG-ATTTA
1 TGGACT-TGTATGTA
37319213 TGGACTTGTATGTA
1 TGGACTTGTATGTA
37319227 TGGA
1 TGGA
37319231 TAACATGAAA
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
13 1 0.03
14 32 0.94
15 1 0.03
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.43
Consensus pattern (14 bp):
TGGACTTGTATGTA
Found at i:37319599 original size:53 final size:53
Alignment explanation
Indices: 37319489--37319645 Score: 172
Period size: 53 Copynumber: 3.0 Consensus size: 53
37319479 GCACTAAGAG
* * * * *
37319489 ACCATATTGTGTAAGACTGTAACTAGTGGGTTATGGCCTCATTTAGAAAGAAG
1 ACCATATTGTGTAAGACCGTAACTAGTGGGTTATGACATCATATAGAAAGAAA
* * * * * *
37319542 ACCATATCGTGTAAGACCGTAACTAGTGGCTTATGATATTATATGGAAATAAA
1 ACCATATTGTGTAAGACCGTAACTAGTGGGTTATGACATCATATAGAAAGAAA
* * *
37319595 ACCATATTGCT-TAAGACCATAACTGGTGGGTTATGGCATCATATAGAAAGA
1 ACCATATTG-TGTAAGACCGTAACTAGTGGGTTATGACATCATATAGAAAGA
37319646 TTCAAGGAAG
Statistics
Matches: 83, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
53 82 0.99
54 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (53 bp):
ACCATATTGTGTAAGACCGTAACTAGTGGGTTATGACATCATATAGAAAGAAA
Found at i:37321341 original size:27 final size:28
Alignment explanation
Indices: 37321257--37321354 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
37321247 CATGAGATTG
* * * *
37321257 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
37321286 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
37321314 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37321341 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
37321355 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37321365 original size:27 final size:27
Alignment explanation
Indices: 37321285--37321367 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
37321275 TAAATTGTAC
* *
37321285 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
37321313 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
37321340 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
37321367 A
1 A
37321368 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:37321368 original size:29 final size:27
Alignment explanation
Indices: 37321257--37321368 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
37321247 CATGAGATTG
** * *
37321257 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
37321286 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
37321314 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
37321341 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
37321369 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:37330902 original size:25 final size:25
Alignment explanation
Indices: 37330874--37330924 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
37330864 TAAAAGATAA
37330874 AACCAGAAATATGAATTTTCATGGG
1 AACCAGAAATATGAATTTTCATGGG
37330899 AACCAGAAATATGAATTTTCATGGG
1 AACCAGAAATATGAATTTTCATGGG
37330924 A
1 A
37330925 TAATATTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (25 bp):
AACCAGAAATATGAATTTTCATGGG
Found at i:37333016 original size:24 final size:24
Alignment explanation
Indices: 37332989--37333040 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37332979 TTAGTAAGTC
*
37332989 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37333013 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37333037 AAAT
1 AAAT
37333041 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37334987 original size:24 final size:24
Alignment explanation
Indices: 37334960--37335011 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37334950 TTAGTAAGTC
*
37334960 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37334984 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37335008 AAAT
1 AAAT
37335012 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37340150 original size:46 final size:44
Alignment explanation
Indices: 37340050--37340157 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
37340040 TGTCTTTGAC
** * * *
37340050 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
* *
37340094 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCTATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
37340140 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
37340158 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:37352155 original size:21 final size:20
Alignment explanation
Indices: 37352131--37352182 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
37352121 AATATAGGTC
* *
37352131 CAAACAACTACAAAGTATAAT
1 CAAACAAC-ACAAAGCATAAA
37352152 CAAACCAACACAAAGCATAAA
1 CAAA-CAACACAAAGCATAAA
37352173 CAAACGAACA
1 CAAAC-AACA
37352183 ACTTGAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 22 0.81
22 4 0.15
ACGTcount: A:0.60, C:0.25, G:0.06, T:0.10
Consensus pattern (20 bp):
CAAACAACACAAAGCATAAA
Found at i:37354836 original size:19 final size:19
Alignment explanation
Indices: 37354812--37354850 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
37354802 CAATTAAGGG
*
37354812 TAATTAATGACTTAATTGA
1 TAATTAAGGACTTAATTGA
* *
37354831 TAATTAGGGATTTAATTGA
1 TAATTAAGGACTTAATTGA
37354850 T
1 T
37354851 TAGAGCCTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (19 bp):
TAATTAAGGACTTAATTGA
Found at i:37357038 original size:46 final size:45
Alignment explanation
Indices: 37356914--37357039 Score: 182
Period size: 46 Copynumber: 2.8 Consensus size: 45
37356904 TGATATGTGT
* * *
37356914 GCTAGTGTAAGACATGTCTAGGACATGCATCAGACATAGCATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GGCATAGCACGAGA
*
37356960 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAG-ACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCA-T-AGCACGAGA
37357006 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
37357040 CTCGCGATAT
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
45 3 0.04
46 68 0.93
47 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.21
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATAGCACGAGA
Found at i:37358435 original size:21 final size:20
Alignment explanation
Indices: 37358409--37358448 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
37358399 GTCATAATAG
*
37358409 CCACACGGGTGTGTTGCCCTT
1 CCACACGGGCGTG-TGCCCTT
37358430 CCACACGGGCGTGTGCCCT
1 CCACACGGGCGTGTGCCCT
37358449 GTTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCCTT
Found at i:37371763 original size:39 final size:39
Alignment explanation
Indices: 37371650--37371810 Score: 189
Period size: 39 Copynumber: 4.2 Consensus size: 39
37371640 CAGTGATGTT
* *
37371650 TATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * * * *
37371689 TATTCGGA-GTAGGGCCCACAGGCTATGTACTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
37371727 TATCCAGACTTAAGGTCCGCAGGATATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
37371766 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
37371805 TGTCCG
1 TATCCG
37371811 TGCTAAAGTC
Statistics
Matches: 100, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
38 31 0.31
39 69 0.69
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:37373395 original size:46 final size:45
Alignment explanation
Indices: 37373320--37373410 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 45
37373310 ATTAATGACT
37373320 TAGTTTGATAATTAGGATTTAATTGATTAGAGGCTGTGAGCTAGC
1 TAGTTTGATAATTAGGATTTAATTGATTAGAGGCTGTGAGCTAGC
*
37373365 TAGTTTGATAATTAGGGATTTAATTGATTAGAGGCTGTGTGCTAGC
1 TAGTTTGATAATTA-GGATTTAATTGATTAGAGGCTGTGAGCTAGC
37373411 ATCGTTGGCA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 14 0.32
46 30 0.68
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.38
Consensus pattern (45 bp):
TAGTTTGATAATTAGGATTTAATTGATTAGAGGCTGTGAGCTAGC
Found at i:37376404 original size:57 final size:57
Alignment explanation
Indices: 37376332--37376492 Score: 216
Period size: 57 Copynumber: 2.8 Consensus size: 57
37376322 AAGGCTGCCC
* * * *
37376332 TTAACAGGTTTGCCACAAAGGCTTACCTTTCTAGAGTTTTTCCATAA-GGGTTGTCCT
1 TTAATAGGTTCGCCACAAAGGCTTACCTTTCCAGAGTTTTTCCACAAGGGGTT-TCCT
* * *
37376389 TTAATAGGTTCGCCACAAAGGCTTACCTTTCCAAACTTTTGCCACAAGGGGTTTCCT
1 TTAATAGGTTCGCCACAAAGGCTTACCTTTCCAGAGTTTTTCCACAAGGGGTTTCCT
** *
37376446 TTAATAGGTTCGCCACAAATTCTTGCCTTTCCAGAGTTTTTCCACAA
1 TTAATAGGTTCGCCACAAAGGCTTACCTTTCCAGAGTTTTTCCACAA
37376493 AGGTATCTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
57 85 0.94
58 5 0.06
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (57 bp):
TTAATAGGTTCGCCACAAAGGCTTACCTTTCCAGAGTTTTTCCACAAGGGGTTTCCT
Found at i:37376461 original size:28 final size:28
Alignment explanation
Indices: 37376377--37376464 Score: 88
Period size: 29 Copynumber: 3.1 Consensus size: 28
37376367 GTTTTTCCAT
37376377 AAGGGTTGTCCTTTAATAGGTTCGCCACA
1 AAGGGTT-TCCTTTAATAGGTTCGCCACA
* * ** *
37376406 AAGGCTTACCTTTCCAA-ACTTTTGCCACA
1 AAGGGTTTCCTTT--AATAGGTTCGCCACA
*
37376435 AGGGGTTTCCTTTAATAGGTTCGCCACA
1 AAGGGTTTCCTTTAATAGGTTCGCCACA
37376463 AA
1 AA
37376465 TTCTTGCCTT
Statistics
Matches: 44, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
27 2 0.05
28 15 0.34
29 25 0.57
30 2 0.05
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (28 bp):
AAGGGTTTCCTTTAATAGGTTCGCCACA
Found at i:37376718 original size:52 final size:52
Alignment explanation
Indices: 37376644--37376801 Score: 192
Period size: 52 Copynumber: 3.0 Consensus size: 52
37376634 TTCTTTAAAA
* *
37376644 TTTT-CCATATGATGCTATAACCCACTAGTTATAGTCTTACACGATATGATT
1 TTTTCCCATATGATGCCATAACCCACTAGTTATGGTCTTACACGATATGATT
* * * *
37376695 TTTTCCCACATGATGCCATAACCCAGTAGTTATGGTCTTACACGATTTGACCT
1 TTTTCCCATATGATGCCATAACCCACTAGTTATGGTCTTACACGATATGA-TT
* * * * * *
37376748 TCTTCTCATATGATGCCATAACCTACCAGTTACGGTCTTACACAATATGATT
1 TTTTCCCATATGATGCCATAACCCACTAGTTATGGTCTTACACGATATGATT
37376800 TT
1 TT
37376802 ATTCAGCACC
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
51 4 0.05
52 42 0.48
53 42 0.48
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (52 bp):
TTTTCCCATATGATGCCATAACCCACTAGTTATGGTCTTACACGATATGATT
Found at i:37376779 original size:53 final size:52
Alignment explanation
Indices: 37376648--37376797 Score: 183
Period size: 53 Copynumber: 2.9 Consensus size: 52
37376638 TTAAAATTTT
* * * *
37376648 CCATATGATGCTATAACCCACTAGTTATAGTCTTACACGATATGATTTTTTC
1 CCATATGATGCCATAACCCACTAGTTATGGTCTTACACGATATGACTTCTTC
* * *
37376700 CCACATGATGCCATAACCCAGTAGTTATGGTCTTACACGATTTGACCTTCTTC
1 CCATATGATGCCATAACCCACTAGTTATGGTCTTACACGATATGA-CTTCTTC
* * * * *
37376753 TCATATGATGCCATAACCTACCAGTTACGGTCTTACACAATATGA
1 CCATATGATGCCATAACCCACTAGTTATGGTCTTACACGATATGA
37376798 TTTTATTCAG
Statistics
Matches: 82, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
52 40 0.49
53 42 0.51
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (52 bp):
CCATATGATGCCATAACCCACTAGTTATGGTCTTACACGATATGACTTCTTC
Found at i:37378672 original size:27 final size:27
Alignment explanation
Indices: 37378642--37378819 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37378632 ATATTAAGCC
* * * *
37378642 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37378669 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37378696 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37378724 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37378751 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37378778 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37378805 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37378820 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37378781 original size:82 final size:81
Alignment explanation
Indices: 37378663--37378818 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37378653 TGCTATATAA
* *
37378663 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37378728 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37378745 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37378809 CACTTAGTGC
65 CACTTAGTGC
37378819 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37382638 original size:46 final size:47
Alignment explanation
Indices: 37382549--37382719 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 47
37382539 GGTAAGGTAT
* *
37382549 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CGTCTCG-AAC
*
37382597 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGA-AC
* * *
37382643 TGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCT-CGTCTC-AATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACGTCTCGAA--C
37382689 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
37382720 AGCTCTCCTA
Statistics
Matches: 107, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
45 2 0.02
46 60 0.56
47 30 0.28
48 15 0.14
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAAC
Found at i:37382749 original size:94 final size:91
Alignment explanation
Indices: 37382548--37382768 Score: 236
Period size: 94 Copynumber: 2.4 Consensus size: 91
37382538 GGGTAAGGTA
*
37382548 TCGATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTAACCGATGCATGTCCCAG
1 TCGATG-CATGTCCTAGACAT-GTCTTACACTAG-CTATCATCTCG-AACCGATGCATGTCCCAG
* * *
37382612 ACATGTCTTACACTGGCTTACGTCTCGAGG
62 ACATGTCTTACACTAGCTTACCTATCGAGG
* *
37382642 -CTGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTC-AATGCCGATGCCATGTCCCAG
1 TC-GATGCATGTCCTAGACATGTCTTACACTAGCTATCATCTCGAA--CCGATG-CATGTCCCAG
*
37382705 ACATGGTCTTACACTAGCTCT-CCTAAT-GTGG
62 ACAT-GTCTTACACTAGCT-TACCT-ATCGAGG
*
37382736 TCGATGCATGTCCTGGACATGTCTTACACTAGC
1 TCGATGCATGTCCTAGACATGTCTTACACTAGC
37382769 AAACAATAAC
Statistics
Matches: 110, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
90 2 0.02
92 24 0.22
93 29 0.26
94 52 0.47
95 3 0.03
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (91 bp):
TCGATGCATGTCCTAGACATGTCTTACACTAGCTATCATCTCGAACCGATGCATGTCCCAGACAT
GTCTTACACTAGCTTACCTATCGAGG
Found at i:37387153 original size:16 final size:15
Alignment explanation
Indices: 37387127--37387156 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
37387117 ACTAGATCGG
37387127 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
37387142 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
37387157 TCGATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:37387621 original size:27 final size:27
Alignment explanation
Indices: 37387583--37387658 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
37387573 TTGGTGACTA
37387583 TGCCACAAATATCTGATCTGGAGGCTC
1 TGCCACAAATATCTGATCTGGAGGCTC
* * *
37387610 TGCCACATATATCTGTTCTGGTGGCTC
1 TGCCACAAATATCTGATCTGGAGGCTC
* * *
37387637 TACCACGACTATCTGTATCTGG
1 TGCCACAAATATCTG-ATCTGG
37387659 TGACTCTGTC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 35 0.88
28 5 0.12
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (27 bp):
TGCCACAAATATCTGATCTGGAGGCTC
Found at i:37419555 original size:20 final size:21
Alignment explanation
Indices: 37419530--37419571 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
37419520 AAGTTCCCAT
37419530 AAGG-ACTCGAGTTAAGTTAA
1 AAGGAACTCGAGTTAAGTTAA
*
37419550 AAGGACACTCGGGTTAAGTTAA
1 AAGGA-ACTCGAGTTAAGTTAA
37419572 GGGAGAGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
22 15 0.79
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (21 bp):
AAGGAACTCGAGTTAAGTTAA
Found at i:37420663 original size:60 final size:62
Alignment explanation
Indices: 37420527--37420691 Score: 210
Period size: 60 Copynumber: 2.7 Consensus size: 62
37420517 ATTTCTGAAG
* * * * * *
37420527 GAAAGCCTTTGTGGTGAGTACTGGTTATAAAGGATAGCTTT-TGTAGCACAACTTTGGATAG
1 GAAAGCCTTTATGGCGAGTACTGGATATAAAGGATAGCTTTGTGTAGCACAACTCTAGATAA
*
37420588 GAAAGCCTTTATGGCGAGTACTGGATATAAAGGATAGCTTTGTG-A-CATAACTCTAGATAA
1 GAAAGCCTTTATGGCGAGTACTGGATATAAAGGATAGCTTTGTGTAGCACAACTCTAGATAA
* * * *
37420648 GAAAGCCTTTTTGGCGAGCACTAGATATAAAGGATAACTTTGTG
1 GAAAGCCTTTATGGCGAGTACTGGATATAAAGGATAGCTTTGTG
37420692 GAAAAACTCT
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
60 51 0.55
61 39 0.42
62 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (62 bp):
GAAAGCCTTTATGGCGAGTACTGGATATAAAGGATAGCTTTGTGTAGCACAACTCTAGATAA
Found at i:37421019 original size:16 final size:16
Alignment explanation
Indices: 37420998--37421028 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37420988 TTTCACTTTA
*
37420998 TGTCTTTTGTATTTTT
1 TGTCTTTTATATTTTT
37421014 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
37421029 GTATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.10, T:0.74
Consensus pattern (16 bp):
TGTCTTTTATATTTTT
Found at i:37428227 original size:50 final size:50
Alignment explanation
Indices: 37428173--37428273 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
37428163 ATTCTTAATA
37428173 ATTATCTCAAAACCAATTTTGTCTAAACAAGAAATTGAAATAATGTTTTT
1 ATTATCTCAAAACCAATTTTGTCTAAACAAGAAATTGAAATAATGTTTTT
*
37428223 ATTATCTCAAAACTAATTTTGTCTAAACAAGAAATTGAAATAATGTTTTT
1 ATTATCTCAAAACCAATTTTGTCTAAACAAGAAATTGAAATAATGTTTTT
37428273 A
1 A
37428274 GTCAACCTGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.39
Consensus pattern (50 bp):
ATTATCTCAAAACCAATTTTGTCTAAACAAGAAATTGAAATAATGTTTTT
Found at i:37430859 original size:27 final size:27
Alignment explanation
Indices: 37430828--37431003 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
37430818 TAAATTGTAC
37430828 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37430855 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37430881 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37430909 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37430937 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37430964 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37430991 AGCACTGAGTGTG
1 AGCACTAAGTGTG
37431004 TGGACTCAAT
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37430942 original size:82 final size:81
Alignment explanation
Indices: 37430829--37430984 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37430819 AAATTGTACA
* *
37430829 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37430893 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37430910 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37430975 TGCGAGTTGA
65 TGCGAATTGA
37430985 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37430996 original size:82 final size:81
Alignment explanation
Indices: 37430825--37431003 Score: 225
Period size: 82 Copynumber: 2.2 Consensus size: 81
37430815 GATTAAATTG
* *
37430825 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37430890 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37430906 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37430970 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37430988 TATAGCACTGAGTGTG
1 TACAGCACTAAGTGTG
37431004 TGGACTCAAT
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37431358 original size:22 final size:22
Alignment explanation
Indices: 37431333--37431377 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
37431323 GATAGGTTGG
37431333 AGGAACTATGGTATGGTTCGGA
1 AGGAACTATGGTATGGTTCGGA
37431355 AGGAACTATGGTATGGTTCGGA
1 AGGAACTATGGTATGGTTCGGA
37431377 A
1 A
37431378 TGGATGGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.09, G:0.36, T:0.27
Consensus pattern (22 bp):
AGGAACTATGGTATGGTTCGGA
Found at i:37446948 original size:25 final size:26
Alignment explanation
Indices: 37446850--37446990 Score: 87
Period size: 25 Copynumber: 5.6 Consensus size: 26
37446840 AGATTCTTAG
* * *
37446850 GAAAGTCTTTGTGGTG-AACT-GTTC
1 GAAAGCCTTTGTGGTGAAACTCTTTA
* ***
37446874 GAAAAGCCTTTATGGTG-AACTCTCCG
1 G-AAAGCCTTTGTGGTGAAACTCTTTA
* * *
37446900 GAAGGCCTTTTTGGCG-AACTCTTTA
1 GAAAGCCTTTGTGGTGAAACTCTTTA
* * *
37446925 GAAAGTCTTTGTGGTGAATC-CTTTG
1 GAAAGCCTTTGTGGTGAAACTCTTTA
* * *
37446950 GAATGCCTTTGCGGT-AAACTCTCTA
1 GAAAGCCTTTGTGGTGAAACTCTTTA
37446975 GAAAGCCTTTGTGGTG
1 GAAAGCCTTTGTGGTG
37446991 TGTCATCTGG
Statistics
Matches: 86, Mismatches: 26, Indels: 8
0.72 0.22 0.07
Matches are distributed among these distances:
24 4 0.05
25 79 0.92
26 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (26 bp):
GAAAGCCTTTGTGGTGAAACTCTTTA
Found at i:37450895 original size:23 final size:23
Alignment explanation
Indices: 37450865--37450918 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
37450855 AATTTTATCG
37450865 ATTTTGGTATTTTAAATTGAAGT
1 ATTTTGGTATTTTAAATTGAAGT
37450888 ATTTTGGTATTTTAAATTGAAGT
1 ATTTTGGTATTTTAAATTGAAGT
37450911 ATTTTGGT
1 ATTTTGGT
37450919 TCTACATAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.28, C:0.00, G:0.19, T:0.54
Consensus pattern (23 bp):
ATTTTGGTATTTTAAATTGAAGT
Found at i:37463047 original size:33 final size:33
Alignment explanation
Indices: 37463005--37463070 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
37462995 GCATAGAGTA
* * *
37463005 ACAGTCTGGGTCTGAGCCCTATTCAGTATCAGT
1 ACAGTCTGGGCCTGAGCCCTATACAGTAACAGT
*
37463038 ACAGTCTGGGCCTTAGCCCTATACAGTAACAGT
1 ACAGTCTGGGCCTGAGCCCTATACAGTAACAGT
37463071 GTAGACCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (33 bp):
ACAGTCTGGGCCTGAGCCCTATACAGTAACAGT
Found at i:37463509 original size:27 final size:27
Alignment explanation
Indices: 37463449--37463514 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
37463439 GGGCAAAATC
* *
37463449 GTCATTTTACCATACAAGTGTATTACA
1 GTCATTTTACCTTACAAGGGTATTACA
* **
37463476 GTCATTTTACCTTACAGGGGTATTATG
1 GTCATTTTACCTTACAAGGGTATTACA
*
37463503 GTTATTTTACCT
1 GTCATTTTACCT
37463515 ATTTTAGGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCTTACAAGGGTATTACA
Found at i:37466350 original size:3 final size:3
Alignment explanation
Indices: 37466342--37466367 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
37466332 CACATTAGAC
37466342 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
37466368 TAAGACTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:37473673 original size:43 final size:43
Alignment explanation
Indices: 37473600--37473707 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
37473590 GATTAACGAG
*
37473600 ATGTGAATATGTGTAAGACCATGCCCGGGACATTGGAATCATT
1 ATGTGATTATGTGTAAGACCATGCCCGGGACATTGGAATCATT
*** * *
37473643 ATGTGATTATGTGTAAGACCATGTTTGGGACATTGGCATCGTT
1 ATGTGATTATGTGTAAGACCATGCCCGGGACATTGGAATCATT
* *
37473686 ATTTGATT-TCGTGTGAGACCAT
1 ATGTGATTAT-GTGTAAGACCAT
37473708 AGCTGGGCTA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 55 0.98
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATGCCCGGGACATTGGAATCATT
Found at i:37478717 original size:48 final size:48
Alignment explanation
Indices: 37478665--37478931 Score: 241
Period size: 48 Copynumber: 5.6 Consensus size: 48
37478655 AACGGTTCAG
* * * * * *
37478665 ATGCCATGTCCCAGTCATGATCTTATACGGAATCTCACATTGATGCCA
1 ATGCCATATCCCAGACATGGTCTTATATGGAATCTCATATCGATGCCA
* * * * *
37478713 ATGCCATATCCCATATATGGTCTTACATGGGATCTCATA-CTGATGCCG
1 ATGCCATATCCCAGACATGGTCTTATATGGAATCTCATATC-GATGCCA
* * * * * *
37478761 ATACCATGTCCCAGACATGGTCTTATATGGGATCTCTTATCAATGCCG
1 ATGCCATATCCCAGACATGGTCTTATATGGAATCTCATATCGATGCCA
*
37478809 ATGCCATATCCCAGACATGGTCTTATAT-GAGATCTCTTATCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTATATGGA-ATCTCATATCGATGCCA
* * * * * * **
37478857 ATGCCATATCCCAGATATGGTCTTACATGGTATCTCATTTAGAAGCTG
1 ATGCCATATCCCAGACATGGTCTTATATGGAATCTCATATCGATGCCA
* * *
37478905 ATTCCATATCCCAGATATGATCTTATA
1 ATGCCATATCCCAGACATGGTCTTATA
37478932 CGAGATCTCA
Statistics
Matches: 180, Mismatches: 35, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
47 1 0.01
48 177 0.98
49 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTATATGGAATCTCATATCGATGCCA
Found at i:37478769 original size:96 final size:96
Alignment explanation
Indices: 37478579--37478881 Score: 246
Period size: 96 Copynumber: 3.2 Consensus size: 96
37478569 TGCTAATGCT
* * * * *
37478579 ATGTCCCAGACGTGGTCTTACATGGGATCTCACATCAATGCCAA---CA-A-CCCAG-CTATGGT
1 ATGTCCCAGACATGATCTTATACGGAATCTCACATCAATGCCAATGCCATATCCCAGAC-ATGGT
* * * * *
37478638 CTTACAT-AAAGTCTCATAACGGT-TCAGATGCC
65 CTTACATGAGA-TCTCATATCGATGCCA-ATACC
* ** * *
37478670 ATGTCCCAGTCATGATCTTATACGGAATCTCACATTGATGCCAATGCCATATCCCATATATGGTC
1 ATGTCCCAGACATGATCTTATACGGAATCTCACATCAATGCCAATGCCATATCCCAGACATGGTC
* *
37478735 TTACATGGGATCTCATA-CTGATGCCGATACC
66 TTACATGAGATCTCATATC-GATGCCAATACC
* * * ** *
37478766 ATGTCCCAGACATGGTCTTATATGGGATCTCTTATCAATGCCGATGCCATATCCCAGACATGGTC
1 ATGTCCCAGACATGATCTTATACGGAATCTCACATCAATGCCAATGCCATATCCCAGACATGGTC
* * *
37478831 TTATATGAGATCTCTTATCGATGCCAATGCC
66 TTACATGAGATCTCATATCGATGCCAATACC
* * *
37478862 ATATCCCAGATATGGTCTTA
1 ATGTCCCAGACATGATCTTA
37478882 CATGGTATCT
Statistics
Matches: 168, Mismatches: 34, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
91 36 0.21
94 2 0.01
95 2 0.01
96 125 0.74
97 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (96 bp):
ATGTCCCAGACATGATCTTATACGGAATCTCACATCAATGCCAATGCCATATCCCAGACATGGTC
TTACATGAGATCTCATATCGATGCCAATACC
Found at i:37478892 original size:96 final size:96
Alignment explanation
Indices: 37478706--37478946 Score: 272
Period size: 96 Copynumber: 2.5 Consensus size: 96
37478696 ATCTCACATT
* * * * * *
37478706 GATGCCAATGCCATATCCCATATATGGTCTTACATGGGATCTCATACTGATGCCGATACCATGTC
1 GATGCCGATGCCATATCCCAGATATGGTCTTATATGAGATCTCATACTGATGCCAATACCATATC
*
37478771 CCAGACATGGTCTTATATGGGATCTC-TTATCA
66 CCAGACATGGTCTTACATGGGATCTCATT-T-A
* * *
37478803 -ATGCCGATGCCATATCCCAGACATGGTCTTATATGAGATCTCTTA-TCGATGCCAATGCCATAT
1 GATGCCGATGCCATATCCCAGATATGGTCTTATATGAGATCTCATACT-GATGCCAATACCATAT
* *
37478866 CCCAGATATGGTCTTACATGGTATCTCATTTA
65 CCCAGACATGGTCTTACATGGGATCTCATTTA
* * * * *
37478898 GAAGCTGATTCCATATCCCAGATATGATCTTATACGAGATCTCAATACT
1 GATGCCGATGCCATATCCCAGATATGGTCTTATATGAGATCTC-ATACT
37478947 CACATGTCTT
Statistics
Matches: 120, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
95 2 0.02
96 113 0.94
97 4 0.03
98 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (96 bp):
GATGCCGATGCCATATCCCAGATATGGTCTTATATGAGATCTCATACTGATGCCAATACCATATC
CCAGACATGGTCTTACATGGGATCTCATTTA
Found at i:37478917 original size:144 final size:144
Alignment explanation
Indices: 37478664--37478940 Score: 360
Period size: 144 Copynumber: 1.9 Consensus size: 144
37478654 TAACGGTTCA
* * * *
37478664 GATGCCATGTCCCAGTCATGATCTTATACGGAATCTCACATTGATGCCAATGCCATATCCCATAT
1 GATGCCATATCCCAGACATGATCTTATACGGAATCTCACATCGATGCCAATGCCATATCCCAGAT
* * * * *
37478729 ATGGTCTTACATGGGATCTCATACTGATGCCGATACCATGTCCCAGACATGGTCTTATATGGGAT
66 ATGGTCTTACATGGGATCTCATACTGAAGCCGATACCATATCCCAGACATGATCTTATACGAGAT
37478794 CTCTTATCAATGCC
131 CTCTTATCAATGCC
* * **
37478808 GATGCCATATCCCAGACATGGTCTTATA-TGAGATCTCTTATCGATGCCAATGCCATATCCCAGA
1 GATGCCATATCCCAGACATGATCTTATACGGA-ATCTCACATCGATGCCAATGCCATATCCCAGA
* * * * *
37478872 TATGGTCTTACATGGTATCTCAT-TTAGAAGCTGATTCCATATCCCAGATATGATCTTATACGAG
65 TATGGTCTTACATGGGATCTCATACT-GAAGCCGATACCATATCCCAGACATGATCTTATACGAG
37478936 ATCTC
129 ATCTC
37478941 AATACTCACA
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
143 3 0.03
144 110 0.97
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (144 bp):
GATGCCATATCCCAGACATGATCTTATACGGAATCTCACATCGATGCCAATGCCATATCCCAGAT
ATGGTCTTACATGGGATCTCATACTGAAGCCGATACCATATCCCAGACATGATCTTATACGAGAT
CTCTTATCAATGCC
Found at i:37483548 original size:27 final size:27
Alignment explanation
Indices: 37483518--37483695 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
37483508 ATATTGAGCC
* *
37483518 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
37483545 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
37483572 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
37483600 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
37483627 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
37483654 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
37483681 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37483696 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37483630 original size:55 final size:54
Alignment explanation
Indices: 37483518--37483695 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
37483508 ATATTGAGCC
* * * * *
37483518 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
37483572 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
37483627 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
37483681 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37483696 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:37491556 original size:27 final size:27
Alignment explanation
Indices: 37491526--37491703 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
37491516 ATATTGAGCC
* *
37491526 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
37491553 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
37491580 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
37491608 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
37491635 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
37491662 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
37491689 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37491704 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37491638 original size:55 final size:54
Alignment explanation
Indices: 37491526--37491703 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
37491516 ATATTGAGCC
* * * * *
37491526 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
37491580 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
37491635 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
37491689 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37491704 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:37498374 original size:30 final size:30
Alignment explanation
Indices: 37498340--37498400 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
37498330 GAGGTCTGTG
37498340 TGCTACGCATCCTAGAGGGAGTAAAATGTA
1 TGCTACGCATCCTAGAGGGAGTAAAATGTA
* *
37498370 TGCTATGCATCCTGGAGGGAGTAAAATGTA
1 TGCTACGCATCCTAGAGGGAGTAAAATGTA
37498400 T
1 T
37498401 CGTGACTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (30 bp):
TGCTACGCATCCTAGAGGGAGTAAAATGTA
Found at i:37501170 original size:27 final size:26
Alignment explanation
Indices: 37501126--37501177 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37501116 CTCGCTGCAA
*
37501126 TCTGGTGTCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
37501153 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
37501178 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.19, T:0.37
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:37501231 original size:31 final size:32
Alignment explanation
Indices: 37501193--37501254 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
37501183 CTCGCTGCAA
* *
37501193 TCTGGTGGCTTCGCCACATATAT-A-TATCTGT
1 TCTGGTGGCCTAGCCACA-ATATCAGTATCTGT
37501224 TCTGGTGGCCTAGCCACAATATCAGTATCTG
1 TCTGGTGGCCTAGCCACAATATCAGTATCTG
37501255 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 4 0.15
31 17 0.63
32 6 0.22
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATCAGTATCTGT
Found at i:37505800 original size:27 final size:28
Alignment explanation
Indices: 37505762--37505837 Score: 88
Period size: 27 Copynumber: 2.8 Consensus size: 28
37505752 GGAAGTGTTG
37505762 TTCTAGTGGCTTTGCCACGTTT-T-ACCA
1 TTCTAGTGGCTTTGCCACGTTTCTGA-CA
*
37505789 TTCTAGTGGCTTTCCCACGTATTCTGACA
1 TTCTAGTGGCTTTGCCACGT-TTCTGACA
*
37505818 -T-TAGTGGCTATGCCACGTTT
1 TTCTAGTGGCTTTGCCACGTTT
37505838 ATTATTATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
26 2 0.05
27 34 0.79
28 3 0.07
29 3 0.07
30 1 0.02
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.39
Consensus pattern (28 bp):
TTCTAGTGGCTTTGCCACGTTTCTGACA
Found at i:37509467 original size:44 final size:43
Alignment explanation
Indices: 37509332--37509489 Score: 164
Period size: 44 Copynumber: 3.7 Consensus size: 43
37509322 TAAGCCAACA
* * * *
37509332 TCCCAGACGTGGTCTTACATGT-AATTCAGTATCGATGCCTCTG
1 TCCCAGACATGGTCTTACACGTAAATTCA-AATCGATGCCTGTG
* * *
37509375 TCCCAGACAAGGTCTTATACG-AAATT-AGATACGATGCC-GATG
1 TCCCAGACATGGTCTTACACGTAAATTCAAAT-CGATGCCTG-TG
37509417 TCCCAGACATGGTCTTACACGTAAATTTCAAATCGATGCCTGTG
1 TCCCAGACATGGTCTTACACGTAAA-TTCAAATCGATGCCTGTG
*
37509461 TCCCAGACACGGTCTTACACG-ATAATTCA
1 TCCCAGACATGGTCTTACACGTA-AATTCA
37509490 GATTAATACC
Statistics
Matches: 97, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 29 0.30
44 33 0.34
45 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAAATTCAAATCGATGCCTGTG
Found at i:37509476 original size:86 final size:87
Alignment explanation
Indices: 37509332--37509492 Score: 229
Period size: 86 Copynumber: 1.9 Consensus size: 87
37509322 TAAGCCAACA
* * * *
37509332 TCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCCCAGACAAGGTCTTATACGA
1 TCCCAGACATGGTCTTACACGTAATTCAGAATCGATGCCTCTGTCCCAGACAAGGTCTTACACGA
37509397 -AATT-AGATACGATGCCGATG
66 TAATTCAGATACGATGCCGATG
* *
37509417 TCCCAGACATGGTCTTACACGTAAATTTCA-AATCGATGCCTGTGTCCCAGACACGGTCTTACAC
1 TCCCAGACATGGTCTTACACGT-AA-TTCAGAATCGATGCCTCTGTCCCAGACAAGGTCTTACAC
37509481 GATAATTCAGAT
64 GATAATTCAGAT
37509493 TAATACCAAC
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 20 0.30
86 34 0.52
87 8 0.12
88 4 0.06
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (87 bp):
TCCCAGACATGGTCTTACACGTAATTCAGAATCGATGCCTCTGTCCCAGACAAGGTCTTACACGA
TAATTCAGATACGATGCCGATG
Found at i:37509957 original size:26 final size:28
Alignment explanation
Indices: 37509898--37509954 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
37509888 ACATGTTTAA
37509898 TTCACAAATTAGTCCTTCAAAACCTCATT
1 TTCACAAATTAGTCC-TCAAAACCTCATT
*
37509927 TTCACAAATTAG-CC-CAAATAGCTCATT
1 TTCACAAATTAGTCCTCAAA-ACCTCATT
37509954 T
1 T
37509955 CACCAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.33
Consensus pattern (28 bp):
TTCACAAATTAGTCCTCAAAACCTCATT
Found at i:37522505 original size:80 final size:79
Alignment explanation
Indices: 37522421--37522592 Score: 202
Period size: 79 Copynumber: 2.2 Consensus size: 79
37522411 GGACTAAGAT
*
37522421 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
37522485 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * * *
37522501 CCGAAGGCATTCGTGCGAGTTATTAAATCTGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
* *
37522566 AACTGGGCTATGTC
66 AACCGGGCTAAGTC
37522580 CCGAAGGCATTTG
1 CCGAAGGCATTTG
37522593 AACGAGGAGC
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 37 0.48
80 37 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:37522572 original size:39 final size:39
Alignment explanation
Indices: 37522421--37522590 Score: 189
Period size: 40 Copynumber: 4.3 Consensus size: 39
37522411 GGACTAAGAT
* * *
37522421 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCTGGGTTAAGTC
* * *
37522461 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCTGGGTTAAGTC
* *
37522501 CCGAAGGCATTCGTGCGAGTTATTAAATCTGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCTGGGTTAAGTC
* * * *
37522541 CCGAAGGCATTGTGTGAGTTACTAAAACTGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCTGGGTTAAGTC
37522580 CCGAAGGCATT
1 CCGAAGGCATT
37522591 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 38 0.33
40 74 0.64
41 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCTGGGTTAAGTC
Found at i:37529864 original size:39 final size:39
Alignment explanation
Indices: 37529660--37529882 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
37529650 TTGAATGCTG
* * * * *
37529660 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
37529700 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
37529739 TTCCGGGTTAAGACCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* * *
37529780 TCCAGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
37529820 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
37529859 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37529883 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 40 0.26
40 101 0.65
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:37540337 original size:25 final size:25
Alignment explanation
Indices: 37540308--37540355 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37540298 TTATAACATG
* * *
37540308 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
37540333 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
37540356 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:37540439 original size:11 final size:11
Alignment explanation
Indices: 37540403--37540458 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
37540393 CATGGTATGT
37540403 ATGATATGCAC
1 ATGATATGCAC
* *
37540414 ATGACATG--T
1 ATGATATGCAC
37540423 ATGATATGCAC
1 ATGATATGCAC
*
37540434 ATGATATG--T
1 ATGATATGCAC
37540443 ATGATATGCAC
1 ATGATATGCAC
37540454 ATGAT
1 ATGAT
37540459 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:37540458 original size:20 final size:20
Alignment explanation
Indices: 37540392--37540458 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
37540382 AATTTGATAA
*
37540392 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
37540412 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
37540432 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37540452 ACATGAT
1 ACATGAT
37540459 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37540531 original size:23 final size:24
Alignment explanation
Indices: 37540505--37540596 Score: 116
Period size: 24 Copynumber: 3.8 Consensus size: 24
37540495 ATGGTGGAAG
37540505 AGGGCTTATGCCCCAGTTATT-AA
1 AGGGCTTATGCCCCAGTTATTAAA
*
37540528 AGGGCTTATGCCCTAGTTATTAAA
1 AGGGCTTATGCCCCAGTTATTAAA
* *
37540552 AGGGCTTTTGCCCCAGTTATTCAA
1 AGGGCTTATGCCCCAGTTATTAAA
*
37540576 AGAGGC-TAGGCCTCCAGTTAT
1 AG-GGCTTATGCC-CCAGTTAT
37540597 ATGATAAAGC
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
23 20 0.33
24 29 0.48
25 11 0.18
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
AGGGCTTATGCCCCAGTTATTAAA
Found at i:37540825 original size:31 final size:31
Alignment explanation
Indices: 37540790--37540853 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
37540780 CGTTTACAGT
37540790 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
37540821 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37540852 AA
1 AA
37540854 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37556303 original size:20 final size:19
Alignment explanation
Indices: 37556262--37556304 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
37556252 TTATGTCTCT
* *
37556262 AAAATTATTATTTTAGAAA
1 AAAATTATAATTTTACAAA
37556281 AAAATTATAATTTTATCAAA
1 AAAATTATAATTTTA-CAAA
37556301 AAAA
1 AAAA
37556305 AGAAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAATTATAATTTTACAAA
Found at i:37556341 original size:19 final size:19
Alignment explanation
Indices: 37556314--37556375 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
37556304 AAGAAAAAAA
*
37556314 TTTATAAATATTTTAAATT
1 TTTAAAAATATTTTAAATT
*
37556333 TTTAAAAATTATTTCGAAATT
1 TTTAAAAA-TATTT-TAAATT
* * *
37556354 TTGAAAATTATTTTGAATT
1 TTTAAAAATATTTTAAATT
37556373 TTT
1 TTT
37556376 TGTAATTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
19 13 0.38
20 10 0.29
21 11 0.32
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTAAAAATATTTTAAATT
Found at i:37556377 original size:21 final size:20
Alignment explanation
Indices: 37556322--37556375 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
37556312 AATTTATAAA
* *
37556322 TATTTTAAATTTTTAAAAAT
1 TATTTTGAATTTTTGAAAAT
* *
37556342 TATTTCGAAATTTTGAAAAT
1 TATTTTGAATTTTTGAAAAT
37556362 TATTTTGAATTTTT
1 TATTTTGAATTTTT
37556376 TGTAATTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.56
Consensus pattern (20 bp):
TATTTTGAATTTTTGAAAAT
Found at i:37557543 original size:21 final size:22
Alignment explanation
Indices: 37557517--37557557 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
37557507 TACTAGACAC
37557517 AGGGGC-ACACACCCGTGTGGG
1 AGGGGCAACACACCCGTGTGGG
37557538 AGGGGCAACACACCCGTGTG
1 AGGGGCAACACACCCGTGTG
37557558 ACCGATTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.22, C:0.29, G:0.39, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACACCCGTGTGGG
Found at i:37558583 original size:28 final size:28
Alignment explanation
Indices: 37558548--37558605 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
37558538 TCTCATCTTA
37558548 TATATATATAACAAATAGGTACTTGTAT
1 TATATATATAACAAATAGGTACTTGTAT
*
37558576 TATATATATAACGAATAGGTACTTGTAT
1 TATATATATAACAAATAGGTACTTGTAT
37558604 TA
1 TA
37558606 CTCACGTCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (28 bp):
TATATATATAACAAATAGGTACTTGTAT
Found at i:37558800 original size:46 final size:45
Alignment explanation
Indices: 37558729--37558887 Score: 151
Period size: 46 Copynumber: 3.4 Consensus size: 45
37558719 GCCATATCTT
*
37558729 AGACATCGTCTTACACTGGC-TCATCTCGTA-GCCGATGCATGTCCC
1 AGACAT-GTCTTACACTAGCTTCATCTCG-AGGCCGATGCATGTCCC
**
37558774 AGACATGTCTTACACTAGCTTACATCTCGAGGTTGATGCATGTCCC
1 AGACATGTCTTACACTAGCTT-CATCTCGAGGCCGATGCATGTCCC
* ** * **
37558820 AGACATGTCTTACACCAGCTCTCATCTTAATGCTAATGCCATGTCCC
1 AGACATGTCTTACACTAGCT-TCATCTCGAGGCCGATG-CATGTCCC
**
37558867 AGATGTGGTCTTACACTAGCT
1 AGACAT-GTCTTACACTAGCT
37558888 CACAATAGCC
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
44 12 0.12
45 8 0.08
46 50 0.52
47 13 0.14
48 13 0.14
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (45 bp):
AGACATGTCTTACACTAGCTTCATCTCGAGGCCGATGCATGTCCC
Found at i:37559249 original size:30 final size:30
Alignment explanation
Indices: 37559215--37559290 Score: 152
Period size: 30 Copynumber: 2.5 Consensus size: 30
37559205 CTATATTTGG
37559215 GCAAAATGACCATTTTGCCACTATACTTTT
1 GCAAAATGACCATTTTGCCACTATACTTTT
37559245 GCAAAATGACCATTTTGCCACTATACTTTT
1 GCAAAATGACCATTTTGCCACTATACTTTT
37559275 GCAAAATGACCATTTT
1 GCAAAATGACCATTTT
37559291 ACCCCTAGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.36
Consensus pattern (30 bp):
GCAAAATGACCATTTTGCCACTATACTTTT
Found at i:37561155 original size:40 final size:40
Alignment explanation
Indices: 37561080--37561165 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
37561070 ACTCTGTATC
* * *
37561080 TCGCACACTAAGTGTCGTACATAGCCGAAGCTATCTTAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* * * *
37561120 TCGCACACTAAGTGCCATATATTGCGGAAGTTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
*
37561160 TAGCAC
1 TCGCAC
37561166 TATAGTCTCA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
Found at i:37563499 original size:28 final size:28
Alignment explanation
Indices: 37563463--37563527 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
37563453 AAAGTGATAT
* *
37563463 TTGAAAAAAATGTCAATT-AGGGATTAAA
1 TTGAGAAAAATGTAAATTAAGGG-TTAAA
*
37563491 TTGAGAAAAGTGTAAATTGAAGGGTTAAA
1 TTGAGAAAAATGTAAATT-AAGGGTTAAA
*
37563520 TTGTGAAA
1 TTGAGAAA
37563528 TAAATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 15 0.48
29 12 0.39
30 4 0.13
ACGTcount: A:0.46, C:0.02, G:0.23, T:0.29
Consensus pattern (28 bp):
TTGAGAAAAATGTAAATTAAGGGTTAAA
Found at i:37566086 original size:43 final size:43
Alignment explanation
Indices: 37565989--37566155 Score: 155
Period size: 43 Copynumber: 3.9 Consensus size: 43
37565979 ATTGAGATGT
* *
37565989 GATTACACGTAAGACCATGTCTGGGACATTGGCTTTGTATAGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATAGA
*
37566032 GATTACATGTAAGACCATGTCTGGGACTTTGGCATTGT-TA-A
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATAGA
* * * * * *
37566073 TTGATTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATA-T
1 --GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATAGA
* * *
37566118 GA-TAGCATGTAAGACCATATATGGGATA-TGGCATTGTA
1 GATTA-CATGTAAGACCATGTCTGGGACATTGGCATTGTA
37566156 CGAGCTTATA
Statistics
Matches: 102, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
41 3 0.03
42 10 0.10
43 86 0.84
44 1 0.01
45 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATAGA
Found at i:37566133 original size:86 final size:85
Alignment explanation
Indices: 37565997--37566154 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 85
37565987 GTGATTACAC
* * * * * *
37565997 GTAAGACCATGTCTGGGACATTGGCTTTGTATAGAGATTACATGTAAGACCATGTCTGGGACTTT
1 GTAAGACCATGTCTGGGACAGTGGCATCGTATAGAGATTACATGTAAGACCATATATGGGA-TAT
37566062 GGCATTGTTAATTGATTTCGT
65 GGCATTGTTAATTGATTTCGT
* *
37566083 GTAAGACCTTGTCTGGGACAGTGGCATCGATATA-TGA-TAGCATGTAAGACCATATATGGGATA
1 GTAAGACCATGTCTGGGACAGTGGCATCG-TATAGAGATTA-CATGTAAGACCATATATGGGATA
37566146 TGGCATTGT
64 TGGCATTGT
37566155 ACGAGCTTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
85 12 0.19
86 46 0.74
87 4 0.06
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.33
Consensus pattern (85 bp):
GTAAGACCATGTCTGGGACAGTGGCATCGTATAGAGATTACATGTAAGACCATATATGGGATATG
GCATTGTTAATTGATTTCGT
Found at i:37566958 original size:21 final size:20
Alignment explanation
Indices: 37566934--37566974 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
37566924 GACCTATGTT
*
37566934 TTCATCAAATTTTTCTAAGTG
1 TTCA-CAAATTTTTATAAGTG
*
37566955 TTCAGAAATTTTTATAAGTG
1 TTCACAAATTTTTATAAGTG
37566975 ATCGGTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (20 bp):
TTCACAAATTTTTATAAGTG
Found at i:37569054 original size:27 final size:27
Alignment explanation
Indices: 37569024--37569201 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
37569014 ATATTGAGCC
* *
37569024 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
37569051 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
37569078 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
37569106 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
37569133 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
37569160 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
37569187 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37569202 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37569163 original size:82 final size:81
Alignment explanation
Indices: 37569045--37569200 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
37569035 TGCTATATAA
* * *
37569045 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
37569110 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37569127 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
37569191 CACTTAGTGC
65 CACTTAGTGC
37569201 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37586224 original size:19 final size:19
Alignment explanation
Indices: 37586200--37586245 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
37586190 TGTGGGTAGT
*
37586200 CCGTGTGGATTTCATACGC
1 CCGTGTGGATTTCACACGC
37586219 CCGTGTGGATTTCACACGC
1 CCGTGTGGATTTCACACGC
37586238 CCGTGTGG
1 CCGTGTGG
37586246 CTAGGCCACG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.13, C:0.28, G:0.30, T:0.28
Consensus pattern (19 bp):
CCGTGTGGATTTCACACGC
Found at i:37590696 original size:42 final size:42
Alignment explanation
Indices: 37590610--37590700 Score: 110
Period size: 42 Copynumber: 2.2 Consensus size: 42
37590600 CAAATCGGTG
** *** *
37590610 TCGATGCCATGTCCCGGACATGGTCTTATACGGGACCCCATA
1 TCGATGCCATGTCCCAAACATGGTCTTATACAAAACCACATA
* *
37590652 TCGATGCCATGTCCCAAACATGGTCTTATACAAAATCACTTA
1 TCGATGCCATGTCCCAAACATGGTCTTATACAAAACCACATA
37590694 TCGATGC
1 TCGATGC
37590701 TTAAGCCATA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (42 bp):
TCGATGCCATGTCCCAAACATGGTCTTATACAAAACCACATA
Found at i:37601443 original size:16 final size:16
Alignment explanation
Indices: 37601422--37601454 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
37601412 GAAATGTGTC
37601422 TATATTATAGTAAACA
1 TATATTATAGTAAACA
37601438 TATATTATAGTAAACA
1 TATATTATAGTAAACA
37601454 T
1 T
37601455 GTAATTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATTATAGTAAACA
Found at i:37606507 original size:42 final size:42
Alignment explanation
Indices: 37606456--37606662 Score: 161
Period size: 43 Copynumber: 4.9 Consensus size: 42
37606446 ATGTTATTTA
* *
37606456 ATATCGATGCCTCTGTCCCAGACAGGGTCTTACACGAAATCAG
1 ATAT-GATGCCTATGTCCCAGACACGGTCTTACACGAAATCAG
* ** *
37606499 ATATGATG-CTGATGCCCCAGACATTGTCTTATACGTAAATCTCA-
1 ATATGATGCCT-ATGTCCCAGACACGGTCTTACACG-AAA--TCAG
* *
37606543 AT-TGAGGCCTATGTCCCAGACACGGTCTTACACAAAATCAG
1 ATATGATGCCTATGTCCCAGACACGGTCTTACACGAAATCAG
* * * * * **
37606584 ATACGATGCCGATGTCCCAGATATGGTCTTATACGTAAATCTC
1 ATATGATGCCTATGTCCCAGACACGGTCTTACACG-AAATCAG
* * *
37606627 A-ATCGAGGCCTGTGTCCCAAACACGGTCTTACACGA
1 ATAT-GATGCCTATGTCCCAGACACGGTCTTACACGA
37606663 TGTCTCAGAT
Statistics
Matches: 127, Mismatches: 28, Indels: 19
0.73 0.16 0.11
Matches are distributed among these distances:
40 3 0.02
41 4 0.03
42 53 0.42
43 60 0.47
44 4 0.03
45 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (42 bp):
ATATGATGCCTATGTCCCAGACACGGTCTTACACGAAATCAG
Found at i:37606582 original size:85 final size:85
Alignment explanation
Indices: 37606458--37606660 Score: 298
Period size: 85 Copynumber: 2.4 Consensus size: 85
37606448 GTTATTTAAT
* * * * * *
37606458 ATCGATGCCTCTGTCCCAGACAGGGTCTTACACGAAATCAGATATGATGCTGATGCCCCAGACAT
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACACAAAATCAGATACGATGCCGATGCCCCAGACAT
*
37606523 TGTCTTATACGTAAATCTCA
66 GGTCTTATACGTAAATCTCA
* * *
37606543 ATTGAGGCCTATGTCCCAGACACGGTCTTACACAAAATCAGATACGATGCCGATGTCCCAGATAT
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACACAAAATCAGATACGATGCCGATGCCCCAGACAT
37606608 GGTCTTATACGTAAATCTCA
66 GGTCTTATACGTAAATCTCA
* *
37606628 ATCGAGGCCTGTGTCCCAAACACGGTCTTACAC
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACAC
37606661 GATGTCTCAG
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 105 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (85 bp):
ATCGAGGCCTATGTCCCAGACACGGTCTTACACAAAATCAGATACGATGCCGATGCCCCAGACAT
GGTCTTATACGTAAATCTCA
Found at i:37606964 original size:9 final size:9
Alignment explanation
Indices: 37606950--37606974 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37606940 AACCATTCAA
37606950 TCATTCATT
1 TCATTCATT
37606959 TCATTCATT
1 TCATTCATT
37606968 TCATTCA
1 TCATTCA
37606975 GTTTAATCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (9 bp):
TCATTCATT
Found at i:37613371 original size:20 final size:20
Alignment explanation
Indices: 37613346--37613413 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
37613336 TCAAAACTTA
37613346 TATACATAGACCTTCTAGCC
1 TATACATAGACCTTCTAGCC
* * * *
37613366 TATACAT-G-CCATCAAAACTTA
1 TATACATAGACCTTC-TAGC--C
37613387 TATACATAGACCTTCTAGCC
1 TATACATAGACCTTCTAGCC
37613407 TATACAT
1 TATACAT
37613414 GCCATACTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
18 4 0.11
19 3 0.09
20 14 0.40
21 7 0.20
22 3 0.09
23 4 0.11
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (20 bp):
TATACATAGACCTTCTAGCC
Done.