Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 139 of 295
Found at i:42833919 original size:13 final size:14
Alignment explanation
Indices: 42833903--42833931 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
42833893 TTATAAATAT
42833903 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
42833916 TTATAATGGTTTAA
1 TTATAATGGTTTAA
42833930 TT
1 TT
42833932 CATCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:42834677 original size:31 final size:31
Alignment explanation
Indices: 42834641--42834706 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
42834631 TGTATTTTTT
*
42834641 ATGCTACATTTGCTGTTTTTGGTTGGATTTC
1 ATGCTACATTTGCTGTTTTTGGTTGGATTTA
*
42834672 ATGCTATATTTGCTGTTTTTGGTTGGATTTA
1 ATGCTACATTTGCTGTTTTTGGTTGGATTTA
42834703 ATGC
1 ATGC
42834707 AAGAAGGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.15, C:0.11, G:0.23, T:0.52
Consensus pattern (31 bp):
ATGCTACATTTGCTGTTTTTGGTTGGATTTA
Found at i:42837301 original size:22 final size:22
Alignment explanation
Indices: 42837276--42837330 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
42837266 TTCTCACTTT
*
42837276 TTCAATCATCCCTCATCCCTCA
1 TTCAATCATCACTCATCCCTCA
* *
42837298 TTC-ATCCCTCATTCATCCCTCA
1 TTCAAT-CATCACTCATCCCTCA
*
42837320 TTCATTCATCA
1 TTCAATCATCA
42837331 TTCTCTTCTC
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
21 2 0.08
22 23 0.88
23 1 0.04
ACGTcount: A:0.22, C:0.42, G:0.00, T:0.36
Consensus pattern (22 bp):
TTCAATCATCACTCATCCCTCA
Found at i:42837331 original size:22 final size:22
Alignment explanation
Indices: 42837288--42837333 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
42837278 CAATCATCCC
*
42837288 TCATCCCTCATTCATCCCTCAT
1 TCATCCCTCATTCATCCATCAT
*
42837310 TCATCCCTCATTCATTCATCAT
1 TCATCCCTCATTCATCCATCAT
42837332 TC
1 TC
42837334 TCTTCTCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (22 bp):
TCATCCCTCATTCATCCATCAT
Found at i:42837333 original size:11 final size:11
Alignment explanation
Indices: 42837288--42837324 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
42837278 CAATCATCCC
42837288 TCATCCCTCAT
1 TCATCCCTCAT
42837299 TCATCCCTCAT
1 TCATCCCTCAT
42837310 TCATCCCTCAT
1 TCATCCCTCAT
42837321 TCAT
1 TCAT
42837325 TCATCATTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.19, C:0.43, G:0.00, T:0.38
Consensus pattern (11 bp):
TCATCCCTCAT
Found at i:42850432 original size:9 final size:9
Alignment explanation
Indices: 42850398--42850426 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
42850388 GATTTTTCAG
42850398 ACATCATTT
1 ACATCATTT
42850407 AC-TCATTT
1 ACATCATTT
42850415 ACATCATTT
1 ACATCATTT
42850424 ACA
1 ACA
42850427 CTATTTCGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.34, C:0.24, G:0.00, T:0.41
Consensus pattern (9 bp):
ACATCATTT
Found at i:42853660 original size:33 final size:33
Alignment explanation
Indices: 42853623--42853686 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 33
42853613 TCCTCAAATG
42853623 AGTAGCATG-ACTAGTGGCTGGAGAAGACAAGGT
1 AGTAGCATGAAC-AGTGGCTGGAGAAGACAAGGT
*
42853656 AGTAGTATGAACAGTGGCTGGAGAAGACAAG
1 AGTAGCATGAACAGTGGCTGGAGAAGACAAG
42853687 ACAGTGCTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 27 0.93
34 2 0.07
ACGTcount: A:0.36, C:0.11, G:0.36, T:0.17
Consensus pattern (33 bp):
AGTAGCATGAACAGTGGCTGGAGAAGACAAGGT
Found at i:42858114 original size:46 final size:46
Alignment explanation
Indices: 42858064--42858236 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
42858054 TGGTTGAGCA
42858064 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
42858110 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
42858155 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
42858203 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
42858237 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:42858220 original size:93 final size:93
Alignment explanation
Indices: 42858061--42858231 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
42858051 GGATGGTTGA
* *
42858061 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
42858126 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
42858154 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
42858219 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
42858232 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:42863488 original size:46 final size:46
Alignment explanation
Indices: 42863336--42863546 Score: 160
Period size: 46 Copynumber: 4.5 Consensus size: 46
42863326 TGTGTGAGCT
* * * * * *
42863336 AGTGTAAGACATGTATGGGGCATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGA-GACGATAGCC
* * * * ** *
42863382 AATGTAAGACCATGTCTGGGACATGGCATCAAC-ATTGAGACAAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTA-CGAGACGATAGCC
* * *
42863430 AGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGATG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGACGAT-AGCC
* * *
42863476 AGTGCAAGACATGTCTGGGAAATGCATCAGCTACGAGACGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGACGATAGCC
42863522 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
42863547 GAATCAACTT
Statistics
Matches: 127, Mismatches: 28, Indels: 19
0.73 0.16 0.11
Matches are distributed among these distances:
45 2 0.02
46 62 0.49
47 42 0.33
48 20 0.16
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGACGATAGCC
Found at i:42863577 original size:47 final size:47
Alignment explanation
Indices: 42863377--42863597 Score: 182
Period size: 47 Copynumber: 4.7 Consensus size: 47
42863367 CACATTATGA
* * * *
42863377 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCAACATTGAGACAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAAC-TCGAGATAT
* * * ** *
42863425 GGGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AACTCGAGATAT
* * * * *
42863471 AAGCCAGTGCAAGA-CATGTCTGGGAAAT-GCATCAGCTACGAGACGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACT-CGAGA-TAT
* * *
42863518 -AGTCAGTGTAAGACCATGTCTGGGACATGGAATCAACTTGAGATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGAGATAT
* * *
42863564 GAGCCAGTATAAGACCATGCCTAGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
42863598 TGGCACCTTA
Statistics
Matches: 135, Mismatches: 32, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
45 2 0.01
46 55 0.41
47 60 0.44
48 18 0.13
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.21
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGAGATAT
Found at i:42869186 original size:17 final size:17
Alignment explanation
Indices: 42869164--42869199 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
42869154 AAATTTGGGG
42869164 TTCTCCATAGCTAGGGC
1 TTCTCCATAGCTAGGGC
42869181 TTCTCCATAGCTAGGGC
1 TTCTCCATAGCTAGGGC
42869198 TT
1 TT
42869200 TCAAGCTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.28, G:0.22, T:0.33
Consensus pattern (17 bp):
TTCTCCATAGCTAGGGC
Found at i:42873586 original size:27 final size:27
Alignment explanation
Indices: 42873555--42873732 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
42873545 TAAATTGTAC
42873555 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
42873582 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
42873608 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
42873636 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
42873664 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
42873691 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
42873718 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
42873733 GGCTCAATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:42873669 original size:82 final size:81
Alignment explanation
Indices: 42873556--42873711 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
42873546 AAATTGTACA
*
42873556 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
42873620 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
42873637 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
42873702 TGCGAGTTGA
65 TGCGAATTGA
42873712 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:42873723 original size:82 final size:81
Alignment explanation
Indices: 42873552--42873732 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
42873542 GATTAAATTG
*
42873552 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
42873617 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
42873633 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
42873697 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
42873715 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
42873733 GGCTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:42873743 original size:27 final size:27
Alignment explanation
Indices: 42873637--42873743 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
42873627 TGACCATGCG
* * * *
42873637 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * *
42873665 GCACTAAGTGTGCGATTTGATTATGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
42873692 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
42873719 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
42873744 CATTCGTGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 55 0.79
28 15 0.21
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:42877947 original size:27 final size:27
Alignment explanation
Indices: 42877917--42878094 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
42877907 ATATTGAGCC
* * * *
42877917 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
42877944 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
42877971 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
42877999 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
42878026 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
42878053 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
42878080 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
42878095 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:42878056 original size:82 final size:81
Alignment explanation
Indices: 42877938--42878093 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
42877928 TGCTATATAA
* *
42877938 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
42878003 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
42878020 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
42878084 CACTTAGTGC
65 CACTTAGTGC
42878094 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:42886006 original size:27 final size:27
Alignment explanation
Indices: 42885975--42886149 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
42885965 TATATTGAGC
* * *
42885975 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
42886002 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
42886029 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** * *
42886057 CGCACACTTAGTGCCGCAT-GTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
*
42886083 CGCACACTTAGTGC-ATCAT-ATC-ATT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
42886108 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
42886135 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
42886150 GTACAATTAA
Statistics
Matches: 129, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
25 20 0.16
26 23 0.18
27 68 0.53
28 18 0.14
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:42886121 original size:79 final size:80
Alignment explanation
Indices: 42885996--42886148 Score: 231
Period size: 79 Copynumber: 1.9 Consensus size: 80
42885986 TGCTATATAA
* *
42885996 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
42886061 CACTTAGTGCCGCATG
65 CACTTAGTGCCGCATG
* *
42886077 TCAATTCGCACACTTAGTGC-ATCAT-ATC-ATTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
42886139 CACTTAGTGC
65 CACTTAGTGC
42886149 TGTACAATTA
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
78 15 0.22
79 27 0.40
80 4 0.06
81 21 0.31
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATG
Found at i:42894040 original size:26 final size:27
Alignment explanation
Indices: 42893895--42894235 Score: 230
Period size: 27 Copynumber: 12.7 Consensus size: 27
42893885 TTTCACCCTA
* * * *
42893895 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * * *
42893922 CAAGTGTATCTCGATAATTTTGCAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
42893948 CAAATGGTATTTTTGTAATTTTTA-AAAGT
1 C-AAGGGTATTTTGGTAA-TTTTACAAA-T
* ***
42893977 CAAGGGTATTTTTGTAATTTTTTTTAAT
1 CAAGGGTATTTTGGTAA-TTTTACAAAT
42894005 C-AGGGTTATTTTGGTAA-TTTACAAAT
1 CAAGGG-TATTTTGGTAATTTTACAAAT
* *
42894031 CAAGGGTATTTTCGTAA-TTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
42894057 CGAGGGTA-TTTGGTAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** * *
42894083 CGAGGGTATTTCAGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
42894110 CAGGGGTA-TTTGGTAGTTTTTCAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
42894135 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * *
42894163 CAGGGGTATTTTGGTAATTTTGCTAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
42894190 CAATGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
42894217 CAAGGGTATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
42894236 CTATCCTATA
Statistics
Matches: 250, Mismatches: 52, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
25 8 0.03
26 68 0.27
27 134 0.54
28 37 0.15
29 3 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:42894089 original size:52 final size:53
Alignment explanation
Indices: 42894005--42894227 Score: 177
Period size: 53 Copynumber: 4.2 Consensus size: 53
42893995 TTTTTTTAAT
* **
42894005 CAGGGTTATTTTGGTAA-TTTACAAATCAAGGGTATTTTC-GTAATTT-ACAAGT
1 CAGGGGTA-TTTGGTAATTTTACAAATCAAGGGTA-TTTCAGTAATTTCACAAAC
** *
42894057 C-GAGGGTATTTGGTAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAAC
1 CAG-GGGTATTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTCACAAAC
* * * ** *
42894110 CAGGGGTATTTGGTAGTTTTTCAAA-CTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTGGTAATTTTACAAATC-AAGGGTATTTCAGTAATTTCACAAAC
* * * ** ***
42894163 CAGGGGTATTTTGGTAATTTTGCTAATCAATGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTA-TTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTCACAAAC
*
42894217 CAAGGGTATTT
1 CAGGGGTATTT
42894228 TAGTAATTCT
Statistics
Matches: 140, Mismatches: 23, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
51 13 0.09
52 27 0.19
53 55 0.39
54 44 0.31
55 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (53 bp):
CAGGGGTATTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTCACAAAC
Found at i:42894253 original size:54 final size:52
Alignment explanation
Indices: 42894085--42894254 Score: 137
Period size: 54 Copynumber: 3.2 Consensus size: 52
42894075 TTACAGGTCG
** * * * * * *
42894085 AGGGTATTTCAGTAATTTCACAAACCAGGGGTA-TTTGGTAGTTTTTCAAACT
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTCCTAA-T
* * *
42894137 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCTAAT
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTCCTAAT
* **
42894190 CAATGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTCTATCCT-AT
1 --AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATT-T-TCCTAAT
42894245 AGGAGTATTT
1 AGG-GTATTT
42894255 CAGTAATTCT
Statistics
Matches: 98, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
52 1 0.01
53 32 0.33
54 58 0.59
55 4 0.04
56 3 0.03
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (52 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTCCTAAT
Found at i:42899426 original size:13 final size:13
Alignment explanation
Indices: 42899408--42899432 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
42899398 TCGACAGGGA
42899408 CACGCCCGTGTGC
1 CACGCCCGTGTGC
42899421 CACGCCCGTGTG
1 CACGCCCGTGTG
42899433 TGATTGCCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.44, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGC
Found at i:42902307 original size:47 final size:47
Alignment explanation
Indices: 42902215--42902337 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
42902205 GCATTGGCAC
*
42902215 TAAGACAAGGATACCATGTAAGGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAA-GACCATGTTTGGAACATGACATTTGG
42902263 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
42902310 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
42902338 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
47 51 0.71
48 21 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:42902380 original size:54 final size:54
Alignment explanation
Indices: 42902316--42902523 Score: 192
Period size: 54 Copynumber: 3.9 Consensus size: 54
42902306 TTGGTAAGAT
*
42902316 AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGC
* * * * *
42902370 AAGGAAATCATGTAAGACTATGTCC-AGGCATGGCATTGATGA-TTACTATAAGGC
1 AAGGATACCATGTAAGACCATG-CCAAGGCATGGAATTGATAAGTT-CTATAAGGC
* * * * *
42902424 AAAGG-TCCCATGGTAAGACCATGCTAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCAT-GTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGC
** * * *
42902478 AAGGATACCACATAAGACCATGTCAAGACATGGCAA-TGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGG-AATTGATAAGTTC
42902524 AAAAAGGAAA
Statistics
Matches: 128, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
53 33 0.26
54 60 0.47
55 33 0.26
56 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGC
Found at i:42902536 original size:108 final size:109
Alignment explanation
Indices: 42902327--42902537 Score: 246
Period size: 108 Copynumber: 1.9 Consensus size: 109
42902317 AGGATATCAT
* ** *
42902327 GTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACTATG
1 GTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACATAAGACCATG
* * * * * * *
42902392 TCCAGGCATGGCATTGATGATTACTATAAGGCAAAGGTCCCATG
66 TCAAGACATGGCAATGATAATTACAAAAAGGAAAAGGTCCCATG
* * * * *
42902436 GTAAGACCATGCTAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACATAAGACCATG
1 GTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACATAAGACCATG
*
42902500 TCAAGACATGGCAATGGTAAGTT-CAAAAAGGAAAAGGT
66 TCAAGACATGGCAATGATAA-TTACAAAAAGGAAAAGGT
42902538 TCCCGAGTAA
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
108 51 0.61
109 33 0.39
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (109 bp):
GTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACATAAGACCATG
TCAAGACATGGCAATGATAATTACAAAAAGGAAAAGGTCCCATG
Found at i:42918370 original size:45 final size:46
Alignment explanation
Indices: 42918217--42918427 Score: 200
Period size: 47 Copynumber: 4.6 Consensus size: 46
42918207 GTGTGTGAGC
* * * * *
42918217 TAGTGTAAGA-CATGTCTGGGGCATGCATCGGCCAC-ATTATGAGAG
1 TAGTGTAAGACCATGTCTAGGACATGCATCGGCCTCGA-GACGAGAG
* * * *
42918262 CCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGGG
1 -TAGTGTAAGACCATGTCTAGGACAT-GCATCGGCCTCGAGACGAGAG
*
42918310 CTAGTGTAAGA-CATGTCTAGGACATGCAACGGCCTCGAGACGTA-AG
1 -TAGTGTAAGACCATGTCTAGGACATGCATCGGCCTCGAGACG-AGAG
* *
42918356 TAGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGACGATAG
1 TAGTGTAAGACCATGTCTAGGACATGCATCGGCCT-CGAGACGAGAG
*
42918401 TCAGTGGAAGACCATGTCTAGGACATG
1 T-AGTGTAAGACCATGTCTAGGACATG
42918428 ACATTGACTT
Statistics
Matches: 139, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
44 3 0.02
45 39 0.28
46 32 0.23
47 41 0.29
48 23 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.21
Consensus pattern (46 bp):
TAGTGTAAGACCATGTCTAGGACATGCATCGGCCTCGAGACGAGAG
Found at i:42918469 original size:139 final size:139
Alignment explanation
Indices: 42918217--42918470 Score: 307
Period size: 139 Copynumber: 1.8 Consensus size: 139
42918207 GTGTGTGAGC
* * * *
42918217 TAGTGTAAGACATGTCTGGGGCATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTA
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCCAGTGGAAGACCATGTCTA
* * * * * * *
42918282 GGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGTCTAGGACATGCAACGGCCTCG
66 GGACATGACATCGACATTCAGACGAGAGCCAGTATAAGACATGCCTAGGACATGCAACGGCCTCG
42918347 AGACGTAAG
131 AGACGTAAG
* * *
42918356 TAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GACGATAGTCAGTGGAAGACCATGTCT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGACGAGAGCCAGTGGAAGACCATGTCT
* * *
42918420 AGGACATGACATTGAC-TTCAGA-TATGAGCCAGTATAAGACCGTGCCTAGGA
65 AGGACATGACATCGACATTCAGACGA-GAGCCAGTATAAGA-CATGCCTAGGA
42918471 TATGGAATCG
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
137 1 0.01
138 16 0.17
139 77 0.81
140 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.22
Consensus pattern (139 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCCAGTGGAAGACCATGTCTA
GGACATGACATCGACATTCAGACGAGAGCCAGTATAAGACATGCCTAGGACATGCAACGGCCTCG
AGACGTAAG
Found at i:42924657 original size:55 final size:55
Alignment explanation
Indices: 42924524--42924667 Score: 177
Period size: 55 Copynumber: 2.6 Consensus size: 55
42924514 TATGTAGGCC
* * * **
42924524 CACGCCCTTGTTAATTTAACAGGTTCACCCAC-GGTTGCTTGGCACGGGCGTGTCG
1 CACGCCCGTGTTAATTTGACAGGTTCGCCCACGGGTT-CAAGGCACGGGCGTGTCG
42924579 CACGCCCGTGTTAATTTGACAGGTTCAG-CCACGGGTTCAAGGCACGGGCGTGTCG
1 CACGCCCGTGTTAATTTGACAGGTTC-GCCCACGGGTTCAAGGCACGGGCGTGTCG
* *
42924634 CACGCCCGT-TCTATTTTGGCAGGTTCGCCCACGG
1 CACGCCCGTGT-TAATTTGACAGGTTCGCCCACGG
42924668 CCATGTCTCA
Statistics
Matches: 78, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
54 2 0.03
55 72 0.92
56 4 0.05
ACGTcount: A:0.16, C:0.30, G:0.29, T:0.25
Consensus pattern (55 bp):
CACGCCCGTGTTAATTTGACAGGTTCGCCCACGGGTTCAAGGCACGGGCGTGTCG
Found at i:42938794 original size:30 final size:30
Alignment explanation
Indices: 42938760--42938819 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
42938750 CTTTAATATG
*
42938760 AACTTTGGAAAAATTACATTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
42938790 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
42938820 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:42940907 original size:45 final size:45
Alignment explanation
Indices: 42940836--42941100 Score: 235
Period size: 45 Copynumber: 5.8 Consensus size: 45
42940826 TTGTAGCTTT
* *
42940836 AATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTC
* *
42940881 AGTCTGCTCCACTACAACTTCAGGGAAATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTC
* * * *
42940926 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAGCTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGA-TT-T-GC---TATCTTC
** * * * *
42940977 AATCTATTCCACTCCAACGTCAGGGAAATAAGATTTTCTGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTC
* ** * * * **
42941022 AGTCTGCTCTGCTGCAACTTCAAGGAGATAAGAATTG-TGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTC
* * * *
42941066 AATCTGCTCCACTACAACTTTAGGGAGAGAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATT
42941101 CACCCTGTTG
Statistics
Matches: 174, Mismatches: 40, Indels: 13
0.77 0.18 0.06
Matches are distributed among these distances:
44 33 0.19
45 100 0.57
46 2 0.01
47 1 0.01
48 3 0.02
49 1 0.01
50 2 0.01
51 32 0.18
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTC
Found at i:42940923 original size:148 final size:142
Alignment explanation
Indices: 42940742--42941100 Score: 479
Period size: 141 Copynumber: 2.5 Consensus size: 142
42940732 TAATTTATTT
42940742 CACTACAACTTCAGGGAAATAAGATTTGTTATCTTCAATCTGCTCCACTGTAACTTCAGGGAGAT
1 CACTACAACTTCAGGGAAATAAGATTTG-TATCTTCAATCTGCTCCACTGTAACTTCAGGGAGAT
* * * *
42940807 AAGATTTGTAGCTTGTAGCTTGTAGCTTTAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTT
65 AAGA-TT-T---TTGTAGCTTGTAGCTTTAATCTATTCCACTCCAACGTCAGGGAAATAAGATTT
42940872 GCTATCTTCAGTCTGCTC
125 GCTATCTTCAGTCTGCTC
42940890 CACTACAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGTAACTTCAGGGAGAT
1 CACTACAACTTCAGGGAAATAAGATTTG-TATCTTCAATCTGCTCCACTGTAACTTCAGGGAGAT
* *
42940955 AAGA--TTTGTAGCTTGTAGCTTTAATCTATTCCACTCCAACGTCAGGGAAATAAGATTTTCTGT
65 AAGATTTTTGTAGCTTGTAGCTTTAATCTATTCCACTCCAACGTCAGGGAAATAAGATTTGCTAT
42941018 CTTCAGTCTGCTC
130 CTTCAGTCTGCTC
** * * * * ** ** * *
42941031 TGCTGCAACTTCAAGGAGATAAGAATTGTGGCTTCAATCTGCTCCACTACAACTTTAGGGAGAGA
1 CACTACAACTTCAGGGAAATAAGATTTGTATCTTCAATCTGCTCCACTGTAACTTCAGGGAGATA
42941096 AGATT
66 AGATT
42941101 CACCCTGTTG
Statistics
Matches: 190, Mismatches: 19, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
140 34 0.18
141 87 0.46
144 1 0.01
148 68 0.36
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (142 bp):
CACTACAACTTCAGGGAAATAAGATTTGTATCTTCAATCTGCTCCACTGTAACTTCAGGGAGATA
AGATTTTTGTAGCTTGTAGCTTTAATCTATTCCACTCCAACGTCAGGGAAATAAGATTTGCTATC
TTCAGTCTGCTC
Found at i:42941021 original size:96 final size:96
Alignment explanation
Indices: 42940888--42941064 Score: 255
Period size: 96 Copynumber: 1.8 Consensus size: 96
42940878 TTCAGTCTGC
* * *
42940888 TCCACTACAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGTAACTTCAGGGAG
1 TCCACTACAACGTCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAAGGAG
*
42940953 ATAAGATTTGTAGCTTGTAGCTTTAATCTAT
66 ATAAGAATTGTAGCTTGTAGCTTTAATCTAT
* * * * **
42940984 TCCACTCCAACGTCAGGGAAATAAGATTTTCTGTCTTCAGTCTGCTCTGCTGCAACTTCAAGGAG
1 TCCACTACAACGTCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAAGGAG
*
42941049 ATAAGAATTGTGGCTT
66 ATAAGAATTGTAGCTT
42941065 CAATCTGCTC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 70 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (96 bp):
TCCACTACAACGTCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAAGGAG
ATAAGAATTGTAGCTTGTAGCTTTAATCTAT
Found at i:42945621 original size:46 final size:46
Alignment explanation
Indices: 42945571--42945739 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
42945561 TTGAGCATCT
* *
42945571 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* * * *
42945617 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCC
* * *
42945664 GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
*
42945710 GAGCTCGTTGAGTTGAGTCCGAGTTCACTT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTT
42945740 GGGGGCGGGT
Statistics
Matches: 102, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 56 0.55
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
Found at i:42945724 original size:93 final size:93
Alignment explanation
Indices: 42945565--42945735 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
42945555 GGATGGTTGA
* * *
42945565 GCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
42945630 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
42945658 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
42945723 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
42945736 ACTTGGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:42946002 original size:19 final size:20
Alignment explanation
Indices: 42945965--42946002 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
42945955 ATAAGGTGGT
42945965 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
42945985 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
42946003 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:42955099 original size:48 final size:48
Alignment explanation
Indices: 42955024--42955251 Score: 216
Period size: 48 Copynumber: 4.9 Consensus size: 48
42955014 CACATGGTAG
* * *
42955024 GATGCCAATGTCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * ** ** *
42955072 GATGCCAATGCCATGTACGAGACATGGTCTTACATGGGATCGTAGGTT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
*
42955120 GATGCCAATGCCATGTCCCAGGCATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* ** ** *
42955168 GATGCCGAT---A-G-CCCA-ACTATTATCTTACATGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* * * *
42955211 GATGCCAAAGCCATGTCCAAAACATGGTCTTATATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
42955252 GTACATAACC
Statistics
Matches: 139, Mismatches: 34, Indels: 14
0.74 0.18 0.07
Matches are distributed among these distances:
42 1 0.01
43 31 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 101 0.73
49 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:42969557 original size:31 final size:31
Alignment explanation
Indices: 42969516--42969579 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
42969506 CCTTTTCATA
*
42969516 TTTCATATTTCATAACACTAGGCCGAAGACT
1 TTTCAAATTTCATAACACTAGGCCGAAGACT
** * *
42969547 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGACT
42969578 TT
1 TT
42969580 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTAGGCCGAAGACT
Found at i:42969848 original size:23 final size:23
Alignment explanation
Indices: 42969794--42970004 Score: 341
Period size: 23 Copynumber: 9.1 Consensus size: 23
42969784 CCTAGCCTCT
* *
42969794 TTTAATAACTAGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
42969817 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
42969841 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
**
42969864 TTTAATAACAAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
42969887 CTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
42969910 TTTAATAACTGGGGCACAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
42969933 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
42969956 TTTAATAACTGGGGCACAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
42969979 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
42970002 TTT
1 TTT
42970005 TCACTTCCTC
Statistics
Matches: 175, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
23 154 0.88
24 21 0.12
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:42970082 original size:20 final size:20
Alignment explanation
Indices: 42970054--42970120 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
42970044 TTATGATTAC
*
42970054 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
42970074 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
42970094 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
42970114 ACCATGT
1 ATCATGT
42970121 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:42985757 original size:31 final size:31
Alignment explanation
Indices: 42985716--42985779 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
42985706 CCTTTTCATA
*
42985716 TTTCATATTTCATAACACTGGGCCAAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
** *
42985747 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
42985778 TT
1 TT
42985780 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCAAAGCCT
Found at i:42986048 original size:23 final size:23
Alignment explanation
Indices: 42985994--42986112 Score: 184
Period size: 23 Copynumber: 5.1 Consensus size: 23
42985984 CCTAGCCTCT
* *
42985994 TTTAATAACTGGGGCAAAAGTCCT
1 TTTAATAACTGGGGCATAAG-CCC
*
42986018 TTTAATAACTGGGGCATAAACCC
1 TTTAATAACTGGGGCATAAGCCC
*
42986041 TTTAATAACTGGGGTATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
42986064 TTTAATAACTGGGGCACAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
42986087 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
42986110 TTT
1 TTT
42986113 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
23 69 0.79
24 18 0.21
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:42986191 original size:20 final size:20
Alignment explanation
Indices: 42986163--42986229 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
42986153 TTCTGATTAC
*
42986163 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
42986183 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
42986203 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
42986223 ACCATGT
1 ATCATGT
42986230 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:42991853 original size:92 final size:94
Alignment explanation
Indices: 42991744--42991963 Score: 345
Period size: 94 Copynumber: 2.4 Consensus size: 94
42991734 AATTACCCTA
* * *
42991744 AGTAAGTATGTATTGATAACTTGTTAAGACCAAATGTTGAGCA-AT-TGGTTTATATTCTAAGAG
1 AGTAAGTATGTATTGATAAATTGTTGAGACCAAATGTTGAGCAGATATGGATTATATTCTAAGAG
*
42991807 TTGAAGGAAGAATACTGTAAATACTGAGG
66 TTGAAGGAAGAATACCGTAAATACTGAGG
* *
42991836 AGTAAGTATGTACTGATAAATTGTTGAGACCAAATGTTGAGCAGTTATGGATTATATTCTAAGAG
1 AGTAAGTATGTATTGATAAATTGTTGAGACCAAATGTTGAGCAGATATGGATTATATTCTAAGAG
* * *
42991901 TTGAGGGAAGAATACCGTAATTATTGAGG
66 TTGAAGGAAGAATACCGTAAATACTGAGG
42991930 AGTAAGTATGTATTGATAAATTGTTGAGACCAAA
1 AGTAAGTATGTATTGATAAATTGTTGAGACCAAA
42991964 GTCGATATTT
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
92 40 0.34
93 1 0.01
94 75 0.65
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (94 bp):
AGTAAGTATGTATTGATAAATTGTTGAGACCAAATGTTGAGCAGATATGGATTATATTCTAAGAG
TTGAAGGAAGAATACCGTAAATACTGAGG
Found at i:42994218 original size:101 final size:100
Alignment explanation
Indices: 42994003--42994283 Score: 273
Period size: 101 Copynumber: 2.8 Consensus size: 100
42993993 GTTGTGAGGA
** * *** * *
42994003 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTA-AG-TCACGTGTGTAGTA
1 CACATGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGAT--TAATAGATCACATGTGTAGTA
* * * *
42994066 CTAAGTGCAGGCTATTACGTGTACCAAATTGATAGGT
64 CTAAGTGCAGGCTACTACATGTACCAAATGGATAAGT
* * * * *
42994103 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGA-TAACTTCGATCACATGTGTAGTA
1 CACATGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTAA--TAGATCACATGTGTAGTA
* * * *
42994167 CTAAATGCAGGCTGCTACATGTATCAGATGGATAAGT
64 CTAAGTGCAGGCTACTACATGTACCAAATGGATAAGT
* * *
42994204 CACGA-GTGTAGTACTAACTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTAC
1 CAC-ATGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTAATAGATCACATGTGTAGTAC
42994268 TAAGTGCAGGCTACTA
65 TAAGTGCAGGCTACTA
42994284 TGCGTACCAG
Statistics
Matches: 148, Mismatches: 27, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
97 2 0.01
100 67 0.45
101 76 0.51
102 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (100 bp):
CACATGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTAATAGATCACATGTGTAGTACT
AAGTGCAGGCTACTACATGTACCAAATGGATAAGT
Found at i:42994277 original size:151 final size:151
Alignment explanation
Indices: 42994003--42994291 Score: 443
Period size: 151 Copynumber: 1.9 Consensus size: 151
42993993 GTTGTGAGGA
** ** * * *
42994003 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTAAGTCACGTGTGTAGTACT
1 CACATGTGTAGTACTAAATGCAGGCTACTACATGTATAAGATGGATAAGTCACGAGTGTAGTACT
* * *
42994068 AAGTGCAGGCTATTACGTGTACCAAATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
66 AACTGCAGGCTACTACGTGTACCAAATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
*
42994133 TGTGTACCCGATAACTTCGAT
131 TGCGTACCCGATAACTTCGAT
* *
42994154 CACATGTGTAGTACTAAATGCAGGCTGCTACATGTATCAGATGGATAAGTCACGAGTGTAGTACT
1 CACATGTGTAGTACTAAATGCAGGCTACTACATGTATAAGATGGATAAGTCACGAGTGTAGTACT
* *
42994219 AACTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
66 AACTGCAGGCTACTACGTGTACCAAATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
42994284 TGCGTACC
131 TGCGTACC
42994292 AGAAAGCTTC
Statistics
Matches: 123, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
151 123 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (151 bp):
CACATGTGTAGTACTAAATGCAGGCTACTACATGTATAAGATGGATAAGTCACGAGTGTAGTACT
AACTGCAGGCTACTACGTGTACCAAATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
TGCGTACCCGATAACTTCGAT
Found at i:42994293 original size:50 final size:50
Alignment explanation
Indices: 42994003--42994294 Score: 300
Period size: 50 Copynumber: 5.8 Consensus size: 50
42993993 GTTGTGAGGA
* * *** * * *
42994003 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
* * *
42994053 CACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAAATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
* * * * * *
42994103 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGA-TAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGT
* * * * * *
42994154 CACATGTGTAGTACTAAATGCAGGCTGCTACATGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
* *
42994204 CACGA-GTGTAGTACTAACTGTAGGCTACTACGTGTACCAGATTGATAGGT
1 CAC-ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
* *
42994254 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
42994295 AAGCTTCGGT
Statistics
Matches: 194, Mismatches: 43, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
49 3 0.02
50 152 0.78
51 38 0.20
52 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
Found at i:42994515 original size:16 final size:16
Alignment explanation
Indices: 42994494--42994525 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
42994484 AGAATGGAGT
42994494 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
42994510 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
42994526 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:42995161 original size:180 final size:179
Alignment explanation
Indices: 42994853--42995176 Score: 508
Period size: 180 Copynumber: 1.8 Consensus size: 179
42994843 CCGAGAGCTG
* * *
42994853 TACCATGAGATAAATAATTTTTAGTGAAGAGAGGTTGAAACTGTTGGATAGTGAAATAGGGGTAT
1 TACCATGAGATAAATAATTTTTAGTGAAGAGAGGTAGAAACTGTCGGATAGTGAAACAGGGGTAT
*
42994918 TTTAATGAATAAAATGTACTAGTTGGCTAAATAAAAAATTCTGAAAATTTTATGGTAAGAATATA
66 TTTAATGAATAAAATGTACTAGTTGGCTAAACAAAAAATTCTGAAAATTTTATGGTAAGAATATA
42994983 TATGAGTATAGTTTCTGGAAAAATTAGAAGTTCTCCATTTAGAGTACCA
131 TATGAGTATAGTTTCTGGAAAAATTAGAAGTTCTCCATTTAGAGTACCA
* *
42995032 TACCATGAGATAAATAATTTTTAGTTAAGAGAGGTCAG-AACTGTCGGGTAGTGAAACAGGGGTA
1 TACCATGAGATAAATAATTTTTAGTGAAGAGAGGT-AGAAACTGTCGGATAGTGAAACAGGGGTA
* * * *
42995096 TATTTAATGAATAAACTGTACTCA-TTGGCTAGACCAAAAATTCTGAAAATTTTGTGGTAAGAAT
65 T-TTTAATGAATAAAATGTACT-AGTTGGCTAAACAAAAAATTCTGAAAATTTTATGGTAAGAAT
*
42995160 ATATATGAGTCTAGTTT
128 ATATATGAGTATAGTTT
42995177 TAGATAAAAT
Statistics
Matches: 131, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
179 58 0.44
180 72 0.55
181 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (179 bp):
TACCATGAGATAAATAATTTTTAGTGAAGAGAGGTAGAAACTGTCGGATAGTGAAACAGGGGTAT
TTTAATGAATAAAATGTACTAGTTGGCTAAACAAAAAATTCTGAAAATTTTATGGTAAGAATATA
TATGAGTATAGTTTCTGGAAAAATTAGAAGTTCTCCATTTAGAGTACCA
Found at i:42998857 original size:164 final size:164
Alignment explanation
Indices: 42998375--42999111 Score: 817
Period size: 164 Copynumber: 4.5 Consensus size: 164
42998365 GTGAAGAAGC
* * * * * * *
42998375 ACATTCGTTCCTTCACGTTGATCATTGTAAATATTCTTGTTATATTTTTTACCAATTGTTCTTGC
1 ACATACGTTCCTTCATGTTAATCATTATAAATATTCTTCTTATGTTTTTTACCAGTTGTTCTTGC
* * * * * * * * *
42998440 CCCAGGGTTGAGGGAATAATACCA-TACTTACCGTGCGGTACGTATATATTGAAAACTAGTTGAG
66 CCAAGAGTTGAGGGAATAATA-CATTAATTACAGCGCGGTAAGTATGTATTGATAACTTGTTGAG
*
42998504 ACTAAATGTTGAGCAATTGTGGTTTATATTCTAAG
130 ACCAAATGTTGAGCAATTGTGGTTTATATTCTAAG
* * ** * * *
42998539 ACATGCGTTCCTTTATGTTGGTCATTATAAATATTCTTCTTATATTTTTTTTACTAGTTGTTTTT
1 ACATACGTTCCTTCATGTTAATCATTATAAATATTCTTC-T-TATGTTTTTTACCAGTTGTTCTT
* *
42998604 GCTCTAGAGTTGAGGGAATAATA-ATTTAATTACAGCGC----AGTATGTATTGATAACTTGTTG
64 GCCCAAGAGTTGAGGGAATAATACA-TTAATTACAGCGCGGTAAGTATGTATTGATAACTTGTTG
* ***
42998664 AGACCAAATGTTGAGAAATTCCAGTTTATATTCTAAG
128 AGACCAAATGTTGAGCAATTGTGGTTTATATTCTAAG
* * *
42998701 ACATACATTCTTTCACT-TTAACCATTATAAATATTCTTCTTATGTTTTTTACCAGTTGTTCTTG
1 ACATACGTTCCTTCA-TGTTAATCATTATAAATATTCTTCTTATGTTTTTTACCAGTTGTTCTTG
* * * *
42998765 CCCAAGAGTTGAGGGAACAATACATTAATTACAGCACGGTAAGTATGTATTGATAAGTTCTTGAG
65 CCCAAGAGTTGAGGGAATAATACATTAATTACAGCGCGGTAAGTATGTATTGATAACTTGTTGAG
*
42998830 ACCAAATGTTGAGCAATAGTGGTTTATATTCTAAG
130 ACCAAATGTTGAGCAATTGTGGTTTATATTCTAAG
* * * * *
42998865 ATATATGTTCCTTCATGTTGATCATTATAAATATTCTTATTATGTTTTTTACCAGTTGTTTTTAA
1 ACATACGTTCCTTCATGTTAATCATTATAAATATTCTTCTTATGTTTTTTACCAGTTGTTCTT--
* * * * *
42998930 CCCCCAA-AGTTGAGGAAATAATACCTTAATTACTGCGCGGTAAGTATG-ATTGATAACTTGTTA
64 -GCCCAAGAGTTGAGGGAATAATACATTAATTACAGCGCGGTAAGTATGTATTGATAACTTGTTG
* * *
42998993 AGACCAAATGTTGAGCAATTGTGGTTTATGTTCCAAA
128 AGACCAAATGTTGAGCAATTGTGGTTTATATTCTAAG
* * *
42999030 ACATACGTTCCTTCATGTTAATCTTTATAAATATTCTTCTTATGTTTTTTTACCAGTTCTTATTG
1 ACATACGTTCCTTCATGTTAATCATTATAAATATTCTTCTTATG-TTTTTTACCAGTTGTTCTTG
* * *
42999095 CTCTAGAGTTGATGGAA
65 CCCAAGAGTTGAGGGAA
42999112 GAAGAACATA
Statistics
Matches: 478, Mismatches: 79, Indels: 32
0.81 0.13 0.05
Matches are distributed among these distances:
160 52 0.11
161 2 0.00
162 80 0.17
163 5 0.01
164 148 0.31
165 85 0.18
166 101 0.21
167 5 0.01
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (164 bp):
ACATACGTTCCTTCATGTTAATCATTATAAATATTCTTCTTATGTTTTTTACCAGTTGTTCTTGC
CCAAGAGTTGAGGGAATAATACATTAATTACAGCGCGGTAAGTATGTATTGATAACTTGTTGAGA
CCAAATGTTGAGCAATTGTGGTTTATATTCTAAG
Found at i:43000644 original size:164 final size:164
Alignment explanation
Indices: 43000122--43000727 Score: 645
Period size: 164 Copynumber: 3.7 Consensus size: 164
43000112 TACTACGCGA
* * *
43000122 TAAGTATGCATTGATGACTTATTGAGACCAAATGTTAAGCAATTGTGGTTTATATTTCGAGACAT
1 TAAGTATGCATTGATAACTTGTTGAGACCAAATGTTAAGCAATTGTGATTTATATTTCGAGACAT
* * * * * * * * *
43000187 --GTTCCATT-ATATTGATCATTATAAATCTTCTACTAATGTTTTTTGCTAGATCTTCTTGCTCC
66 ACGTT-TATTCATATTGATCATTATAAATCTTCTTCTTATTTTTTTTACCAGTTGTTTTTGCTCC
* *
43000249 AGAGTTGAGGCAAGAAGAAAGTAATTAATCCGGGG
130 AGAGTTGAGGGAAGAAGAAAGTAATTAATCTGGGG
* * * *
43000284 TAAGTATGCATTGATAACTTGTTGAGACCAAATATTGAGCAAATGTGGTTTATA-TTCTGAGACA
1 TAAGTATGCATTGATAACTTGTTGAGACCAAATGTTAAGCAATTGTGATTTATATTTC-GAGACA
* * * *
43000348 TACATTTCTTCATATTGATAATTATAAATCTTCTTCTTATGTTTTTTTACTAGTTGTTCTTT-CT
65 TACGTTTATTCATATTGATCATTATAAATCTTCTTCTTAT-TTTTTTTACCAGTTGTT-TTTGCT
* * ** *** **
43000412 CCAGAGTTGAGGGAATAA-TACCTGAATTACGGTACGG
128 CCAGAGTTGAGGGAAGAAGAAAGT-AATTAATCTGGGG
* * *
43000449 TAAGTATGTATAGATAACTTGTTGAGACCAAATGTTAAGTAATTGTGATTTATATTTCGAGACAT
1 TAAGTATGCATTGATAACTTGTTGAGACCAAATGTTAAGCAATTGTGATTTATATTTCGAGACAT
* * * * *
43000514 ACGTTCT-TTTATGTTGATCTTTATAAATATTCTTCTTATTTTTTTTACCAGTTGTTTTTGCTCA
66 ACGTT-TATTCATATTGATCATTATAAATCTTCTTCTTATTTTTTTTACCAGTTGTTTTTGCTCC
43000578 AGAGTTGAGGGAAGAAGAAAGTAATTAATCTGGGG
130 AGAGTTGAGGGAAGAAGAAAGTAATTAATCTGGGG
* * *
43000613 TAAGTCTACATTGATAACTTGTTGAGACCAAATGTTGAAAG-AA-TGTGATTTATATTCCGAGAC
1 TAAGTATGCATTGATAACTTGTTGAGACCAAATGTT--AAGCAATTGTGATTTATATTTCGAGAC
* * * * * *
43000676 ACACGTTTATTCATGTTGGTCATTGTAAATCTTCTTCTTGTTTTGTTTACCA
64 ATACGTTTATTCATATTGATCATTATAAATCTTCTTCTTATTTTTTTTACCA
43000728 ATAAATCTTC
Statistics
Matches: 366, Mismatches: 64, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
161 3 0.01
162 56 0.15
163 6 0.02
164 165 0.45
165 127 0.35
166 9 0.02
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (164 bp):
TAAGTATGCATTGATAACTTGTTGAGACCAAATGTTAAGCAATTGTGATTTATATTTCGAGACAT
ACGTTTATTCATATTGATCATTATAAATCTTCTTCTTATTTTTTTTACCAGTTGTTTTTGCTCCA
GAGTTGAGGGAAGAAGAAAGTAATTAATCTGGGG
Found at i:43000667 original size:329 final size:327
Alignment explanation
Indices: 43000122--43000714 Score: 837
Period size: 329 Copynumber: 1.8 Consensus size: 327
43000112 TACTACGCGA
* * *
43000122 TAAGTATGCATTGATGACTTATTGAGACCAAATGTTAAGCAATTGTGGTTTATATTTCGAGACAT
1 TAAGTATGCATAGATAACTTATTGAGACCAAATGTTAAGCAATTGTGATTTATATTTCGAGACAT
* * * *
43000187 GTTCCATTATATTGATCATTATAAATCTTCTACTAATGTTTTTTGCTAGATCTTCTTGCTCCAGA
66 GTTCCATTATATTGATCATTATAAATATTCTACTAATGTTTTTTACCAGATCTTCTTGCTCAAGA
*
43000252 GTTGAGGCAAGAAGAAAGTAATTAATCCGGGGTAAGTATGCATTGATAACTTGTTGAGACCAAAT
131 GTTGAGGCAAGAAGAAAGTAATTAATCCGGGGTAAGTATACATTGATAACTTGTTGAGACCAAAT
* * * * *
43000317 ATTGAGCAAATGTGGTTTATATTCTGAGACATACATTTCTTCATATTGATAATTATAAATCTTCT
196 ATTGAGAAAATGTGATTTATATTCCGAGACACACATTTATTCATATTGATAATTATAAATCTTCT
43000382 TCTTATGTTTTTTTACTAGTTGTTCTTTCTCCAGAGTTGAGGGAATAATACCTGAATTACGGTAC
261 TCTTATGTTTTTTTACTAGTTGTTCTTTCTCCAGAGTTGAGGGAATAATACCTGAATTACGGTAC
43000447 GG
326 GG
* * *
43000449 TAAGTATGTATAGATAACTTGTTGAGACCAAATGTTAAGTAATTGTGATTTATATTTCGAGACAT
1 TAAGTATGCATAGATAACTTATTGAGACCAAATGTTAAGCAATTGTGATTTATATTTCGAGACAT
** * * * * * * * *
43000514 ACGTTCTTTTATGTTGATCTTTATAAATATTCTTCTTATTTTTTTTACCAGTTGTTTTTGCTCAA
66 --GTTCCATTATATTGATCATTATAAATATTCTACTAATGTTTTTTACCAGATCTTCTTGCTCAA
* * *
43000579 GAGTTGAGGGAAGAAGAAAGTAATTAATCTGGGGTAAGTCTACATTGATAACTTGTTGAGACCAA
129 GAGTTGAGGCAAGAAGAAAGTAATTAATCCGGGGTAAGTATACATTGATAACTTGTTGAGACCAA
* * * * * *
43000644 ATGTTGA-AAGAATGTGATTTATATTCCGAGACACACGTTTATTCATGTTGGTCATTGTAAATCT
194 ATATTGAGAA-AATGTGATTTATATTCCGAGACACACATTTATTCATATTGATAATTATAAATCT
43000708 TCTTCTT
258 TCTTCTT
43000715 GTTTTGTTTA
Statistics
Matches: 228, Mismatches: 35, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
327 59 0.26
328 1 0.00
329 168 0.74
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (327 bp):
TAAGTATGCATAGATAACTTATTGAGACCAAATGTTAAGCAATTGTGATTTATATTTCGAGACAT
GTTCCATTATATTGATCATTATAAATATTCTACTAATGTTTTTTACCAGATCTTCTTGCTCAAGA
GTTGAGGCAAGAAGAAAGTAATTAATCCGGGGTAAGTATACATTGATAACTTGTTGAGACCAAAT
ATTGAGAAAATGTGATTTATATTCCGAGACACACATTTATTCATATTGATAATTATAAATCTTCT
TCTTATGTTTTTTTACTAGTTGTTCTTTCTCCAGAGTTGAGGGAATAATACCTGAATTACGGTAC
GG
Found at i:43000733 original size:28 final size:28
Alignment explanation
Indices: 43000701--43000764 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
43000691 TTGGTCATTG
43000701 TAAATCTTCTTCTTGTTTTGTTTACCAA
1 TAAATCTTCTTCTTGTTTTGTTTACCAA
*
43000729 TAAATCTTCTTCTTGTTTTGTTTACCAG
1 TAAATCTTCTTCTTGTTTTGTTTACCAA
*
43000757 TAATTCTT
1 TAAATCTT
43000765 TCTCCAGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.20, C:0.17, G:0.08, T:0.55
Consensus pattern (28 bp):
TAAATCTTCTTCTTGTTTTGTTTACCAA
Found at i:43002350 original size:31 final size:31
Alignment explanation
Indices: 43002312--43002387 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
43002302 CGTATGTGAG
*
43002312 AGGCCGTGTGGGCCACACGAGCTAGCCATTT
1 AGGCCGTGTGGGCCACACGAGCTAGCCATTC
*
43002343 AGGCCGTGTGGGCCACCCGAGCTAGCCATTC
1 AGGCCGTGTGGGCCACACGAGCTAGCCATTC
43002374 AGGCCGTGTGGGCC
1 AGGCCGTGTGGGCC
43002388 CAAAATTCTG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.16, C:0.32, G:0.36, T:0.17
Consensus pattern (31 bp):
AGGCCGTGTGGGCCACACGAGCTAGCCATTC
Found at i:43004600 original size:20 final size:22
Alignment explanation
Indices: 43004554--43004601 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
43004544 TTTAATAATC
*
43004554 CCAAACCCTTAACCCAAAATAT
1 CCAAACCCTAAACCCAAAATAT
*
43004576 -AAAACCCTAAACCC-AAAT-T
1 CCAAACCCTAAACCCAAAATAT
43004595 CCAAACC
1 CCAAACC
43004602 TATAACTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.05
20 9 0.41
21 12 0.55
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.15
Consensus pattern (22 bp):
CCAAACCCTAAACCCAAAATAT
Found at i:43005266 original size:6 final size:6
Alignment explanation
Indices: 43005255--43005292 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
43005245 ATTTTAACCA
43005255 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT AT
1 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT AT
43005293 CACACCTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATAATT
Found at i:43005441 original size:44 final size:43
Alignment explanation
Indices: 43005387--43005474 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 43
43005377 TATAAAAAAA
* *
43005387 TAAATTATAATTATTTTTAAATATGTAACTATCACAACTTCTAT
1 TAAATAATAATTATTTTTAAAT-TATAACTATCACAACTTCTAT
* * *
43005431 TAAATAATAATTATTTTTAAATTATAATTATCATAATTTCTAT
1 TAAATAATAATTATTTTTAAATTATAACTATCACAACTTCTAT
43005474 T
1 T
43005475 TTACGTCAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 18 0.46
44 21 0.54
ACGTcount: A:0.42, C:0.08, G:0.01, T:0.49
Consensus pattern (43 bp):
TAAATAATAATTATTTTTAAATTATAACTATCACAACTTCTAT
Found at i:43010527 original size:19 final size:18
Alignment explanation
Indices: 43010505--43010552 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
43010495 AAACTTAAAA
43010505 ATATATTTTTAAATTTTGT
1 ATATATTTTTAAATTTT-T
43010524 ATATATTTTTAAATTTTT
1 ATATATTTTTAAATTTTT
43010542 -TA-ATTTTTAAA
1 ATATATTTTTAAA
43010553 AATAATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
16 9 0.31
17 2 0.07
18 1 0.03
19 17 0.59
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
ATATATTTTTAAATTTTT
Found at i:43010539 original size:8 final size:8
Alignment explanation
Indices: 43010509--43010552 Score: 52
Period size: 8 Copynumber: 5.1 Consensus size: 8
43010499 TTAAAAATAT
43010509 ATTTTTAA
1 ATTTTTAA
43010517 ATTTTGTATA
1 ATTTT-TA-A
43010527 TATTTTTAA
1 -ATTTTTAA
*
43010536 ATTTTTTA
1 ATTTTTAA
43010544 ATTTTTAA
1 ATTTTTAA
43010552 A
1 A
43010553 AATAATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
8 20 0.65
9 3 0.10
10 3 0.10
11 5 0.16
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (8 bp):
ATTTTTAA
Found at i:43011339 original size:24 final size:24
Alignment explanation
Indices: 43011294--43011391 Score: 73
Period size: 22 Copynumber: 4.2 Consensus size: 24
43011284 GAGATGGTTA
43011294 TAAAAATATATATATTATAAATCT
1 TAAAAATATATATATTATAAATCT
**
43011318 TAAAAA-AT-TATATTATAAA-AA
1 TAAAAATATATATATTATAAATCT
** * *
43011339 T-AATTTGTATATTTTGATAAAT-T
1 TAAAAATATATATATT-ATAAATCT
43011362 TATAAAATATATATTATT-TAAATCT
1 TA-AAAATATATA-TATTATAAATCT
43011387 TAAAA
1 TAAAA
43011392 TTTTTCTAAA
Statistics
Matches: 55, Mismatches: 11, Indels: 16
0.67 0.13 0.20
Matches are distributed among these distances:
20 2 0.04
21 2 0.04
22 16 0.29
23 8 0.15
24 14 0.25
25 10 0.18
26 3 0.05
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (24 bp):
TAAAAATATATATATTATAAATCT
Found at i:43013172 original size:24 final size:24
Alignment explanation
Indices: 43013151--43013248 Score: 142
Period size: 24 Copynumber: 4.1 Consensus size: 24
43013141 GACAAAGACA
* *
43013151 AAGACAAAGGTGGAGATGAAGATG
1 AAGACGAAGGTCGAGATGAAGATG
*
43013175 AAGACGAAGGTTGAGATGAAGATG
1 AAGACGAAGGTCGAGATGAAGATG
*
43013199 AAGACGAGGGTCGAGATGAAGATG
1 AAGACGAAGGTCGAGATGAAGATG
* *
43013223 AAGACGAGGGTCGAGATGAAAATG
1 AAGACGAAGGTCGAGATGAAGATG
43013247 AA
1 AA
43013249 TATGGGAGTT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.43, C:0.06, G:0.38, T:0.13
Consensus pattern (24 bp):
AAGACGAAGGTCGAGATGAAGATG
Found at i:43016600 original size:141 final size:140
Alignment explanation
Indices: 43016276--43017067 Score: 807
Period size: 141 Copynumber: 5.7 Consensus size: 140
43016266 CAAAACAGTG
* * * * *
43016276 CTAAGATGACACTTATGGGGCGACACTTTCCTAAGTGTTGAGATAGACTGGCCAACATACGCTTT
1 CTAAGACGACACTT-TTGGGCGACACTTTCCTAAGTGTTGGGATAGATTTGCCAACATACGCTTT
* *
43016341 GG-CAACTCTTTGTATAAGGGTTGGGATATGCATGACTAAAGCAACACTTAAATAAGAGTTGGC-
65 GGCCAACTCTTTGTATAAGAGTTGGGATATGCATGCCTAAAGCAACACTTAAATAAGAGTTGGCT
43016404 TTTGTCTAGTC
130 TTTGTCTAGTC
* * *
43016415 CTAAGACGACACTTTTGAGGCGACACTTTCTTAAGTGTTGGGATAGAGTTGCGAACATACGCTTT
1 CTAAGACGACACTTTTG-GGCGACACTTTCCTAAGTGTTGGGATAGATTTGCCAACATACGCTTT
* * * * *
43016480 GTCGAACTCTTTGTATAAGAGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCT
65 GGCCAACTCTTTGTATAAGAGTTGGGATATGCATGCCTAAAGCAACACTTAAATAAGAGTTGGCT
*
43016545 TTTGTGTAGTC
130 TTTGTCTAGTC
** * *
43016556 CTAAGACGACACTTTTGTGGCGACACTTTTGTAAGTGTTAGGATAGATTTGCCAACATGCGCTTT
1 CTAAGACGACACTTTTG-GGCGACACTTTCCTAAGTGTTGGGATAGATTTGCCAACATACGCTTT
* ** * * * * *
43016621 GGCCAAATCTTTGCGTAAGGGTTGAGATATGTATGCCTAAAACAACGCTTAAATAAGAGTTGGCT
65 GGCCAACTCTTTGTATAAGAGTTGGGATATGCATGCCTAAAGCAACACTTAAATAAGAGTTGGCT
*
43016686 TTTTTCTAGTC
130 TTTGTCTAGTC
* * *
43016697 CTAAGACGACAGTTTTGGGACTG-TACTTTCCTAAGTGTTGGGATAGATTTGTCAACATACGCTT
1 CTAAGACGACACTTTTGGG-C-GACACTTTCCTAAGTGTTGGGATAGATTTGCCAACATACGCTT
* * * *
43016761 TGACCAACTCTTTGTATAA-AGGTCGAGG-TATGCATGCCTAAGGCAACGCTTAAATAAGAGTTG
64 TGGCCAACTCTTTGTATAAGA-GTTG-GGATATGCATGCCTAAAGCAACACTTAAATAAGAGTTG
*
43016824 G-TTTTGTCCAGTC
127 GCTTTTGTCTAGTC
* * * *
43016837 CTAAGACG--A----T-------ATTTTCCTAAGTGTTGGGACAGACTTGCCGACATACGCTTTG
1 CTAAGACGACACTTTTGGGCGACACTTTCCTAAGTGTTGGGATAGATTTGCCAACATACGCTTTG
* * * * * * * * *
43016889 GTCAACTTTTTGTATAAGGGTTGGGATATGCATACTTAAGGTAACGCTTAAATAAGAGTCGGC-T
66 GCCAACTCTTTGTATAAGAGTTGGGATATGCATGCCTAAAGCAACACTTAAATAAGAGTTGGCTT
* *
43016953 TTGTCCA-AC
131 TTGTCTAGTC
* * * * * *
43016962 ACTATGACTACACTTTTGGGCCGACACTTTCCCAAGTGTTGGGATAGACTTGCGAACATACACTT
1 -CTAAGACGACACTTTTGGG-CGACACTTTCCTAAGTGTTGGGATAGATTTGCCAACATACGCTT
* * *
43017027 TGGCCAACTATTTGTATAAGGGTTGGTATATGCATGCCTAA
64 TGGCCAACTCTTTGTATAAGAGTTGGGATATGCATGCCTAA
43017068 GGGGTTTAGG
Statistics
Matches: 546, Mismatches: 82, Indels: 49
0.81 0.12 0.07
Matches are distributed among these distances:
125 3 0.01
126 100 0.18
128 1 0.00
132 1 0.00
134 1 0.00
138 3 0.01
139 56 0.10
140 145 0.27
141 234 0.43
142 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (140 bp):
CTAAGACGACACTTTTGGGCGACACTTTCCTAAGTGTTGGGATAGATTTGCCAACATACGCTTTG
GCCAACTCTTTGTATAAGAGTTGGGATATGCATGCCTAAAGCAACACTTAAATAAGAGTTGGCTT
TTGTCTAGTC
Found at i:43016956 original size:126 final size:126
Alignment explanation
Indices: 43016723--43016959 Score: 332
Period size: 126 Copynumber: 1.9 Consensus size: 126
43016713 GGGACTGTAC
* * *
43016723 TTTCCTAAGTGTTGGGATAGATTTGTCAACATACGCTTTGACCAACTCTTTGTATAAAGGTCGAG
1 TTTCCTAAGTGTTGGGACAGACTTGCCAACATACGCTTTGACCAACTCTTTGTATAAAGGTCGAG
* * *
43016788 GTATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGTTTTGTCCAGTCCTAAGACGATAT
66 GTATGCATACCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAGTCCTAAGACGATAT
* ** * * *
43016849 TTTCCTAAGTGTTGGGACAGACTTGCCGACATACGCTTTGGTCAACTTTTTGTATAAGGGTTG-G
1 TTTCCTAAGTGTTGGGACAGACTTGCCAACATACGCTTTGACCAACTCTTTGTATAAAGGTCGAG
* *
43016913 GATATGCATACTTAAGGTAACGCTTAAATAAGAGTCGGCTTTGTCCA
66 G-TATGCATACCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCA
43016960 ACACTATGAC
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
125 2 0.02
126 94 0.98
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (126 bp):
TTTCCTAAGTGTTGGGACAGACTTGCCAACATACGCTTTGACCAACTCTTTGTATAAAGGTCGAG
GTATGCATACCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAGTCCTAAGACGATAT
Found at i:43017110 original size:14 final size:14
Alignment explanation
Indices: 43017080--43017167 Score: 65
Period size: 14 Copynumber: 6.3 Consensus size: 14
43017070 GGTTTAGGAT
43017080 TTTAGGGTTTTAAGG
1 TTTAGGG-TTTAAGG
* *
43017095 TTTATGGTTTATGG
1 TTTAGGGTTTAAGG
43017109 TTTAGGGTTTAA-G
1 TTTAGGGTTTAAGG
* * *
43017122 ATTAGTGTTTAGGG
1 TTTAGGGTTTAAGG
43017136 TTTCA-GGTTT-AGTG
1 TTT-AGGGTTTAAG-G
* *
43017150 TTTATGATTTAAGG
1 TTTAGGGTTTAAGG
43017164 TTTA
1 TTTA
43017168 AGAATTAGTT
Statistics
Matches: 57, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
13 12 0.21
14 36 0.63
15 9 0.16
ACGTcount: A:0.20, C:0.01, G:0.28, T:0.50
Consensus pattern (14 bp):
TTTAGGGTTTAAGG
Found at i:43017138 original size:34 final size:34
Alignment explanation
Indices: 43017094--43017158 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
43017084 GGGTTTTAAG
*
43017094 GTTTATGGTTT-ATGGTTTAGGGTTTAAGATTAGT
1 GTTTAGGGTTTCA-GGTTTAGGGTTTAAGATTAGT
* *
43017128 GTTTAGGGTTTCAGGTTTAGTGTTTATGATT
1 GTTTAGGGTTTCAGGTTTAGGGTTTAAGATT
43017159 TAAGGTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.18, C:0.02, G:0.29, T:0.51
Consensus pattern (34 bp):
GTTTAGGGTTTCAGGTTTAGGGTTTAAGATTAGT
Found at i:43017149 original size:21 final size:20
Alignment explanation
Indices: 43017069--43017167 Score: 74
Period size: 21 Copynumber: 4.7 Consensus size: 20
43017059 CATGCCTAAG
*
43017069 GGGTTTAGGATTTTAGGGTTTTA
1 GGGTTTAGG--TTTAGTG-TTTA
*
43017092 AGGTTTATGGTTTA-TGGTTTA
1 GGGTTTA-GGTTTAGT-GTTTA
* *
43017113 GGGTTTAAGATTAGTGTTTA
1 GGGTTTAGGTTTAGTGTTTA
43017133 GGGTTTCAGGTTTAGTGTTTA
1 GGGTTT-AGGTTTAGTGTTTA
* *
43017154 TGATTTAAGGTTTA
1 GGGTTT-AGGTTTA
43017168 AGAATTAGTT
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
20 15 0.24
21 34 0.55
22 5 0.08
23 6 0.10
24 2 0.03
ACGTcount: A:0.20, C:0.01, G:0.30, T:0.48
Consensus pattern (20 bp):
GGGTTTAGGTTTAGTGTTTA
Found at i:43017167 original size:7 final size:7
Alignment explanation
Indices: 43017088--43017169 Score: 53
Period size: 7 Copynumber: 11.9 Consensus size: 7
43017078 ATTTTAGGGT
43017088 TTTAAGG
1 TTTAAGG
*
43017095 TTTATGG
1 TTTAAGG
*
43017102 TTTATGG
1 TTTAAGG
*
43017109 TTTAGGG
1 TTTAAGG
43017116 TTTAA-G
1 TTTAAGG
*
43017122 ATT-AGTG
1 TTTAAG-G
*
43017129 TTTAGGG
1 TTTAAGG
*
43017136 TTTCAGG
1 TTTAAGG
43017143 TTT-AGTG
1 TTTAAG-G
* *
43017150 TTTATGA
1 TTTAAGG
43017157 TTTAAGG
1 TTTAAGG
43017164 TTTAAG
1 TTTAAG
43017170 AATTAGTTTT
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
5 1 0.02
6 5 0.09
7 50 0.86
8 2 0.03
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (7 bp):
TTTAAGG
Found at i:43026893 original size:18 final size:19
Alignment explanation
Indices: 43026865--43026905 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
43026855 GTTTATTACC
* *
43026865 TTCTGCTGGTATTTATTCT
1 TTCTGCTGGTACTTATTAT
43026884 TTCT-CTGGTACTTATTAT
1 TTCTGCTGGTACTTATTAT
43026902 TTCT
1 TTCT
43026906 TTGATTAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.12, C:0.17, G:0.12, T:0.59
Consensus pattern (19 bp):
TTCTGCTGGTACTTATTAT
Found at i:43031112 original size:37 final size:38
Alignment explanation
Indices: 43030975--43031514 Score: 517
Period size: 38 Copynumber: 14.6 Consensus size: 38
43030965 TGTCTTAAAC
* * * *
43030975 AGGTCAATCCCAACCTTTTCTAAAAGTTTCCTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * *
43031013 AGATCTATCCCAACC-TTTTT-AATGTTACCTTAGATGA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGA-CA
* *
43031050 A--TCTATCCCAACC-TTTTT-AAGGTTGCATTAAACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* *
43031084 A-GTCTATCTCAACCTTTTTTTAAGGTTGCCTTTA-ACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCC-TTAGACA
* * * * *
43031121 AGGTCTATCCTAACATTTTTAAAAAGTTGCCTTAGA-T
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
**
43031158 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGGTA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* *
43031196 AGGTCTATCCCAA-CTATTTTAAAAGGTTGCCTTAGATA
1 AGGTCTATCCCAACCT-TTTTTAAAGGTTGCCTTAGACA
* *
43031234 AGGTCTATCCCACCCTTTTTTAAAAGTTGCCTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * *
43031272 AGGTCTATACCAACC-TATTT-AAGGTTGCCTTAGACG
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* *
43031308 A-TTCTATCCCAATCTTTTTTAAAGGTTG-CTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* ** * * *
43031344 AGGTTTATCGTAACTTTTTTTAAATGTTGCCTTAGATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
**
43031382 AGGTCTATCCCAA-CTTTTTTAAAAGGTTATCTTAGAC-
1 AGGTCTATCCCAACCTTTTTT-AAAGGTTGCCTTAGACA
* *
43031419 TGGTCTATCCCAACC-TTTTT-AAGGTTGTCTTAGAC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * *
43031454 AGGTCTATCCCAATCTTTTTCAAAGGTTGGCCTT-GACT
1 AGGTCTATCCCAACCTTTTTTAAAGGTT-GCCTTAGACA
*
43031492 AGGTTTATCCCAACCTTTTTTAA
1 AGGTCTATCCCAACCTTTTTTAA
43031515 TGGTCGGCAT
Statistics
Matches: 415, Mismatches: 67, Indels: 40
0.80 0.13 0.08
Matches are distributed among these distances:
34 2 0.00
35 75 0.18
36 48 0.12
37 117 0.28
38 171 0.41
39 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (38 bp):
AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
Found at i:43031140 original size:38 final size:37
Alignment explanation
Indices: 43030794--43031514 Score: 494
Period size: 38 Copynumber: 19.7 Consensus size: 37
43030784 ATTAGACATG
* *
43030794 AGACAAAGATCTATCCCAACCTTTTT-AA-GTTGCCTT
1 AGAC-AAGGTCTATCCCAACTTTTTTAAAGGTTGCCTT
* * * *
43030830 AGAC-GGGTTTA-CCCTAACCTTTTT-AAGGTTACCTT
1 AGACAAGGTCTATCCC-AACTTTTTTAAAGGTTGCCTT
* * *
43030865 AGACGA-GTTTATCCCAACTTCTTTT-AA-GTTGTCTT
1 AGACAAGGTCTATCCCAACTT-TTTTAAAGGTTGCCTT
* * * * *
43030900 CGAAAAGGTTTATTCCAACTTTTTT-AGGGTTG--TT
1 AGACAAGGTCTATCCCAACTTTTTTAAAGGTTGCCTT
* * * *
43030934 -GTA-AATGGGTTTATCTCAACATTTTTAACA--TTGTCTT
1 AG-ACAA--GGTCTATCCCAACTTTTTTAA-AGGTTGCCTT
* * * * *
43030971 AAAC-AGGTCAATCCCAACCTTTTCTAAAAGTTTCCTT
1 AGACAAGGTCTATCCCAA-CTTTTTTAAAGGTTGCCTT
* * * *
43031008 AGACAAGATCTATCCCAACCTTTTT-AATGTTACCTT
1 AGACAAGGTCTATCCCAACTTTTTTAAAGGTTGCCTT
* * *
43031044 AGATGAA--TCTATCCCAACCTTTTT-AAGGTTGCATT
1 AGA-CAAGGTCTATCCCAACTTTTTTAAAGGTTGCCTT
* * *
43031079 AAACAA-GTCTATCTCAACCTTTTTTTAAGGTTGCCTTT
1 AGACAAGGTCTATCCCAA-CTTTTTTAAAGGTTGCC-TT
* * *
43031117 A-ACAAGGTCTATCCTAACATTTTTAAAAAGTTGCCTT
1 AGACAAGGTCTATCCCAAC-TTTTTTAAAGGTTGCCTT
*
43031154 AGA-TAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTT
1 AGACAAGGTCTATCCCAA-CTTTTTTAAAGGTTGCCTT
** *
43031191 AGGTAAGGTCTATCCCAACTATTTTAAAAGGTTGCCTT
1 AGACAAGGTCTATCCCAACT-TTTTTAAAGGTTGCCTT
* * *
43031229 AGATAAGGTCTATCCCACCCTTTTTTAAAAGTTGCCTT
1 AGACAAGGTCTATCCCA-ACTTTTTTAAAGGTTGCCTT
* * *
43031267 AGACAAGGTCTATACCAACCTATTT-AAGGTTGCCTT
1 AGACAAGGTCTATCCCAACTTTTTTAAAGGTTGCCTT
* *
43031303 AGACGA-TTCTATCCCAATCTTTTTTAAAGGTTG-CTT
1 AGACAAGGTCTATCCCAA-CTTTTTTAAAGGTTGCCTT
* ** *
43031339 AGACAAGGTTTATCGTAACTTTTTTTAAATGTTGCCTT
1 AGACAAGGTCTATCCCAAC-TTTTTTAAAGGTTGCCTT
* **
43031377 AGATAAGGTCTATCCCAACTTTTTTAAAAGGTTATCTT
1 AGACAAGGTCTATCCCAACTTTTTT-AAAGGTTGCCTT
* * *
43031415 AGAC-TGGTCTATCCCAACCTTTTT-AAGGTTGTCTT
1 AGACAAGGTCTATCCCAACTTTTTTAAAGGTTGCCTT
*
43031450 AGAC-AGGTCTATCCCAATCTTTTTCAAAGGTTGGCCTT
1 AGACAAGGTCTATCCCAA-CTTTTTTAAAGGTT-GCCTT
* *
43031488 -GACTAGGTTTATCCCAACCTTTTTTAA
1 AGACAAGGTCTATCCCAA-CTTTTTTAA
43031515 TGGTCGGCAT
Statistics
Matches: 551, Mismatches: 92, Indels: 82
0.76 0.13 0.11
Matches are distributed among these distances:
33 6 0.01
34 20 0.04
35 134 0.24
36 90 0.16
37 132 0.24
38 167 0.30
39 2 0.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.38
Consensus pattern (37 bp):
AGACAAGGTCTATCCCAACTTTTTTAAAGGTTGCCTT
Found at i:43031172 original size:75 final size:74
Alignment explanation
Indices: 43030803--43031511 Score: 506
Period size: 73 Copynumber: 9.7 Consensus size: 74
43030793 GAGACAAAGA
* * *
43030803 TCTATCCCAACC-TTTTT-AA-GTTGCCTTAGAC-GGGTTTA-CCCTAACCTTTTT-AAGGTTAC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC-AACCTTTTTAAAGGTTGC
*
43030862 CTTAGA-CGAG
65 CTTAGATAG-G
* * * * * * * *
43030872 TTTATCCCAA-CTTCTTTT-AA-GTTGTCTTCGAAAAGGTTTATTCCAA-CTTTTTTAGGGTTG-
1 TCTATCCCAACCTT-TTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAAGGTTGC
* * *
43030932 TTGTAAATGGG
65 CT-TAGATAGG
* * * * * * * *
43030943 TTTATCTCAA-CATTTTTAACA--TTGTCTTAAAC-AGGTCAATCCCAACCTTTTCTAAAAGTTT
1 TCTATCCCAACCTTTTTTAA-AGGTTGCCTTAGACAAGGTCTATCCCAACCTTTT-TAAAGGTTG
* *
43031004 CCTTAGACAAGA
64 CCTTAGA-TAGG
* * *
43031016 TCTATCCCAACC-TTTTT-AATGTTACCTTAGATGAA--TCTATCCCAACCTTTTT-AAGGTTGC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGA-CAAGGTCTATCCCAACCTTTTTAAAGGTTGC
* * * *
43031076 ATTAAACAAG
65 CTTAGATAGG
* * * * *
43031086 TCTATCTCAACCTTTTTTTAAGGTTGCCTTTA-ACAAGGTCTATCCTAACATTTTTAAAAAGTTG
1 TCTATCCCAACCTTTTTTAAAGGTTGCC-TTAGACAAGGTCTATCCCAACCTTTTT-AAAGGTTG
43031150 CCTTAGATAGG
64 CCTTAGATAGG
**
43031161 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGGTAAGGTCTATCCCAA-CTATTTTAAAAGGTTG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT-TTTT-AAAGGTTG
43031225 CCTTAGATAAGG
64 CCTTAGAT-AGG
* * * *
43031237 TCTATCCCACCCTTTTTTAAAAGTTGCCTTAGACAAGGTCTATACCAACCTATTT-AAGGTTGCC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAAGGTTGCC
* *
43031301 TTAGA-CGAT
66 TTAGATAG-G
* * ** * *
43031310 TCTATCCCAATCTTTTTTAAAGGTTG-CTTAGACAAGGTTTATCGTAACTTTTTTTAAATGTTGC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAAC-CTTTTTAAAGGTTGC
43031374 CTTAGATAAGG
65 CTTAGAT-AGG
** * *
43031385 TCTATCCCAA-CTTTTTTAAAAGGTTATCTTAGAC-TGGTCTATCCCAACCTTTTT-AAGGTTGT
1 TCTATCCCAACCTTTTTT-AAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAAGGTTGC
*
43031447 CTTAGACAGG
65 CTTAGATAGG
* * * *
43031457 TCTATCCCAATCTTTTTCAAAGGTTGGCCTT-GACTAGGTTTATCCCAACCTTTTT
1 TCTATCCCAACCTTTTTTAAAGGTT-GCCTTAGACAAGGTCTATCCCAACCTTTTT
43031512 TAATGGTCGG
Statistics
Matches: 507, Mismatches: 94, Indels: 74
0.75 0.14 0.11
Matches are distributed among these distances:
68 1 0.00
69 10 0.02
70 48 0.09
71 60 0.12
72 64 0.13
73 121 0.24
74 44 0.09
75 100 0.20
76 57 0.11
77 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (74 bp):
TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAAGGTTGCC
TTAGATAGG
Found at i:43031416 original size:148 final size:148
Alignment explanation
Indices: 43031146--43031514 Score: 485
Period size: 148 Copynumber: 2.5 Consensus size: 148
43031136 TTTTTAAAAA
* * ** *
43031146 GTTGCCTTAGATAGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGGTAAGGTCTATCCCAACT
1 GTTGCCTTAGACAGGTCTATCCCAATCTTTTTTAAAGGTTGCCTTAGACAAGGTTTATCCCAACT
* * * *
43031211 ATTTTAAAAGGTTGCCTTAGATAAGGTCTATCCCACCCTTTTTTAAAAGTTGCCTTAGACAAGGT
66 TTTTTTAAAGGTTGCCTTAGATAAGGTCTATCCCACACTTTTTTAAAAGTTACCTTAGAC-AGGT
43031276 CTATACCAACCTATTTAAG
130 CTATACCAACCTATTTAAG
* **
43031295 GTTGCCTTAGAC-GATTCTATCCCAATCTTTTTTAAAGGTTG-CTTAGACAAGGTTTATCGTAAC
1 GTTGCCTTAGACAG-GTCTATCCCAATCTTTTTTAAAGGTTGCCTTAGACAAGGTTTATCCCAAC
* * *
43031358 TTTTTTTAAATGTTGCCTTAGATAAGGTCTATCCCA-ACTTTTTTAAAAGGTTATCTTAGACTGG
65 TTTTTTTAAAGGTTGCCTTAGATAAGGTCTATCCCACACTTTTTTAAAA-GTTACCTTAGACAGG
* *
43031422 TCTATCCCAACCTTTTTAAG
129 TCTATACCAACCTATTTAAG
* * *
43031442 GTTGTCTTAGACAGGTCTATCCCAATCTTTTTCAAAGGTTGGCCTT-GACTAGGTTTATCCCAAC
1 GTTGCCTTAGACAGGTCTATCCCAATCTTTTTTAAAGGTT-GCCTTAGACAAGGTTTATCCCAAC
*
43031506 CTTTTTTAA
65 TTTTTTTAA
43031515 TGGTCGGCAT
Statistics
Matches: 191, Mismatches: 24, Indels: 11
0.85 0.11 0.05
Matches are distributed among these distances:
147 66 0.35
148 86 0.45
149 39 0.20
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (148 bp):
GTTGCCTTAGACAGGTCTATCCCAATCTTTTTTAAAGGTTGCCTTAGACAAGGTTTATCCCAACT
TTTTTTAAAGGTTGCCTTAGATAAGGTCTATCCCACACTTTTTTAAAAGTTACCTTAGACAGGTC
TATACCAACCTATTTAAG
Found at i:43031473 original size:110 final size:110
Alignment explanation
Indices: 43030968--43031514 Score: 503
Period size: 110 Copynumber: 4.9 Consensus size: 110
43030958 TTAACATTGT
* * * * * *
43030968 CTTAAACAGGTCAATCCCAACCTTTTCTAAAAGTTTCCTTAGACAAGATCTATCCCAACCTTTTT
1 CTTAGACAGGTCTATCCCAACCTTTT-TAAAGGTTGCCTTAGACAAGGTCTATCCCAACTTTTTT
* * *
43031033 -AATGTTACCTTAGATGAA--TCTATCCCAACCTTTTT-AAGGTTGC
65 AAAAGTTGCCTTAGAT-AAGGTCTATCCCAACTTTTTTAAAGGTTGC
* * * * * *
43031076 ATTAAACAAGTCTATCTCAACCTTTTTTTAAGGTTGCCTTTA-ACAAGGTCTATCCTAACATTTT
1 CTTAGACAGGTCTATCCCAACC-TTTTTAAAGGTTGCC-TTAGACAAGGTCTATCCCAAC-TTTT
*
43031140 TAAAAAGTTGCCTTAGAT-AGGTCTATCCCAACCTTTTTTAAAGGTTGC
63 TTAAAAGTTGCCTTAGATAAGGTCTATCCCAA-CTTTTTTAAAGGTTGC
* *
43031188 CTTAGGTA-AGGTCTATCCCAA-CTATTTTAAAAGGTTGCCTTAGATAAGGTCTATCCCACCCTT
1 CTTA-G-ACAGGTCTATCCCAACCT-TTTT-AAAGGTTGCCTTAGACAAGGTCTATCCCA-ACTT
* * * *
43031251 TTTTAAAAGTTGCCTTAGACAAGGTCTATACCAACCTATTT-AAGGTTGC
61 TTTTAAAAGTTGCCTTAGATAAGGTCTATCCCAACTTTTTTAAAGGTTGC
* * * **
43031300 CTTAGAC-GATTCTATCCCAATCTTTTTTAAAGGTTG-CTTAGACAAGGTTTATCGTAACTTTTT
1 CTTAGACAG-GTCTATCCCAA-CCTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAAC-TTTT
* **
43031363 TTAAATGTTGCCTTAGATAAGGTCTATCCCAACTTTTTTAAAAGGTTAT
63 TTAAAAGTTGCCTTAGATAAGGTCTATCCCAACTTTTTT-AAAGGTTGC
* * *
43031412 CTTAGACTGGTCTATCCCAACCTTTTT-AAGGTTGTCTTAGAC-AGGTCTATCCCAATCTTTTTC
1 CTTAGACAGGTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAA-CTTTTTT
* *
43031475 AAAGGTTGGCCTT-GACT-AGGTTTATCCCAACCTTTTTTAA
65 AAAAGTT-GCCTTAGA-TAAGGTCTATCCCAA-CTTTTTTAA
43031515 TGGTCGGCAT
Statistics
Matches: 362, Mismatches: 49, Indels: 54
0.78 0.11 0.12
Matches are distributed among these distances:
108 42 0.12
109 12 0.03
110 123 0.34
111 53 0.15
112 58 0.16
113 60 0.17
114 14 0.04
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (110 bp):
CTTAGACAGGTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACTTTTTTA
AAAGTTGCCTTAGATAAGGTCTATCCCAACTTTTTTAAAGGTTGC
Found at i:43032348 original size:23 final size:22
Alignment explanation
Indices: 43032314--43032361 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
43032304 AAAAACTTAA
* *
43032314 TTTTTTAAAAAAATATGAGTTT
1 TTTTTTAAAAAAACATGAATTT
*
43032336 TTTTTTCAGAAAAACATGAATTT
1 TTTTTT-AAAAAAACATGAATTT
43032359 TTT
1 TTT
43032362 CTACATACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (22 bp):
TTTTTTAAAAAAACATGAATTT
Found at i:43034060 original size:29 final size:29
Alignment explanation
Indices: 43034021--43034099 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
43034011 CTTAATAATC
*
43034021 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
43034051 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
43034080 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
43034100 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:43037877 original size:49 final size:49
Alignment explanation
Indices: 43037769--43038393 Score: 994
Period size: 47 Copynumber: 13.1 Consensus size: 49
43037759 GAAATGATAG
* *
43037769 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAATG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43037816 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43037865 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
43037914 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
43037961 TAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43038010 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
43038059 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
43038106 TAAGGCCTAATGGCCGATGTGATGAACGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
43038153 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
43038200 TAAGGCCTAATGGCCGATGTGATGAACGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43038247 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43038296 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
43038343 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43038390 TAAG
1 TAAG
43038394 TCCCGAAGGG
Statistics
Matches: 543, Mismatches: 21, Indels: 28
0.92 0.04 0.05
Matches are distributed among these distances:
45 2 0.00
47 297 0.55
48 1 0.00
49 243 0.45
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:43037954 original size:96 final size:96
Alignment explanation
Indices: 43037769--43038393 Score: 1005
Period size: 96 Copynumber: 6.6 Consensus size: 96
43037759 GAAATGATAG
* *
43037769 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAATG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
43037832 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAA--GTATATATATGTGA
43037865 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
43037930 ATGTGATGAATGTGAAAGTGTATATACGTGA
66 ATGTGATGAATGTGAAAGTATATATATGTGA
*
43037961 TAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
43038026 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAA--GTATATATATGTGA
*
43038059 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
43038122 ATGTGATGAACGTGAAAGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTATATATATGTGA
* *
43038153 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
43038216 ATGTGATGAACGTGAAAGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTATATATATGTGA
43038247 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
43038312 ATGTGATGAATGTGAAAGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTATATATATGTGA
* * * * * * *
43038343 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
43038394 TCCCGAAGGG
Statistics
Matches: 502, Mismatches: 21, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
94 152 0.30
95 1 0.00
96 258 0.51
98 91 0.18
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTATATATATGTGA
Found at i:43038568 original size:37 final size:37
Alignment explanation
Indices: 43038512--43038590 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
43038502 TCGAGCTCTA
* * *
43038512 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
43038549 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
43038586 AAGAC
1 AAGAC
43038591 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:43040383 original size:43 final size:43
Alignment explanation
Indices: 43040335--43040437 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
43040325 TTGGTTTTCA
43040335 GCACTAAGTGTGCGGGCAATAAGTGGTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGGTCACGGTTGTGAGATTG
*
43040378 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGGTCACGGTTGTGAGATTG
43040421 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
43040438 TTGAAATTCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.16, G:0.37, T:0.25
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGGTCACGGTTGTGAGATTG
Found at i:43040454 original size:29 final size:29
Alignment explanation
Indices: 43040419--43040492 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
43040409 GTTGTGAGAT
* *
43040419 TGGCACTAAGTGTGCGGGCTTGAAA-TTCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
43040448 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
43040477 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
43040493 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:43040902 original size:39 final size:40
Alignment explanation
Indices: 43040803--43040986 Score: 137
Period size: 40 Copynumber: 4.6 Consensus size: 40
43040793 TCGAATGATG
* * * *
43040803 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGA-T-ACTAAA
* * * *
43040843 TCAGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTGGTGCGAGATACTAAA
* *
43040883 TCCGGGGTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAA
** * **
43040922 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG-TGA-TGTA
1 TCCGGGCTAAGTCCCGAAG-GCATTGGTGCGAGAT-ACTAAA
43040962 TCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAG-GCATT
43040987 CATGCTAGTG
Statistics
Matches: 119, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
39 34 0.29
40 63 0.53
41 21 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAA
Found at i:43040965 original size:40 final size:40
Alignment explanation
Indices: 43040921--43041077 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
43040911 GAGTTACTAA
43040921 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
43040961 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * * * *
43041001 ATTCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
43041041 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
43041078 CGTGTATTCG
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:43044551 original size:49 final size:49
Alignment explanation
Indices: 43044443--43045067 Score: 967
Period size: 47 Copynumber: 13.1 Consensus size: 49
43044433 GAAATGATAG
* *
43044443 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAATG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
43044490 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43044539 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
43044588 TAAGGGCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43044635 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43044684 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
43044733 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
43044780 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTG--TATATATGTTA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
43044827 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
43044874 TAAGGCCTAATGGCCGATGTGATGAACGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43044921 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43044970 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * * *
43045017 CAGGGTCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
43045064 TAAG
1 TAAG
43045068 TCCCGAAGGG
Statistics
Matches: 542, Mismatches: 26, Indels: 20
0.92 0.04 0.03
Matches are distributed among these distances:
45 1 0.00
47 300 0.55
48 1 0.00
49 240 0.44
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:43044628 original size:96 final size:96
Alignment explanation
Indices: 43044443--43045067 Score: 969
Period size: 96 Copynumber: 6.6 Consensus size: 96
43044433 GAAATGATAG
* *
43044443 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAATG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
43044506 ATGTGATGAATGTGAAAGTGTATATATATGTGG
66 ATGTGATGAATGTGAAAGTG--TATATATGTGA
*
43044539 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGGCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
43044604 ATGTGATGAATGTGAAAGTGTATATACGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
43044635 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
43044700 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGA
*
43044733 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
43044796 ATGTGATGAACGTGAAAGTGTATATATGTTA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* *
43044827 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
43044890 ATGTGATGAACGTGAAAGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
43044921 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
43044986 ATGTGATGAATGTGAAAGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
43045017 CAGGGTCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
43045068 TCCCGAAGGG
Statistics
Matches: 499, Mismatches: 24, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
94 146 0.29
95 1 0.00
96 260 0.52
98 92 0.18
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:43045242 original size:37 final size:37
Alignment explanation
Indices: 43045186--43045264 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
43045176 TCGAGCTCTA
* * *
43045186 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
43045223 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
43045260 AAGAC
1 AAGAC
43045265 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:43053494 original size:52 final size:52
Alignment explanation
Indices: 43053416--43053516 Score: 202
Period size: 52 Copynumber: 1.9 Consensus size: 52
43053406 GTCCCTTTGA
43053416 TTGTTGGATTTCTTGGAATTCTAGTCTCCATTAACCAAATTGAGATCTGGAT
1 TTGTTGGATTTCTTGGAATTCTAGTCTCCATTAACCAAATTGAGATCTGGAT
43053468 TTGTTGGATTTCTTGGAATTCTAGTCTCCATTAACCAAATTGAGATCTG
1 TTGTTGGATTTCTTGGAATTCTAGTCTCCATTAACCAAATTGAGATCTG
43053517 TGTTTTATGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (52 bp):
TTGTTGGATTTCTTGGAATTCTAGTCTCCATTAACCAAATTGAGATCTGGAT
Found at i:43059452 original size:16 final size:16
Alignment explanation
Indices: 43059427--43059459 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
43059417 ATAACAACGT
*
43059427 ATTTATCAGCTTTAAC
1 ATTTACCAGCTTTAAC
43059443 ATTTACCAGCTTTAAC
1 ATTTACCAGCTTTAAC
43059459 A
1 A
43059460 AAAGAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTTACCAGCTTTAAC
Found at i:43061078 original size:13 final size:13
Alignment explanation
Indices: 43061062--43061094 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
43061052 TTTAATTAAA
*
43061062 TTAGTTAATTAGT
1 TTAGATAATTAGT
43061075 TTAGATAATTAGT
1 TTAGATAATTAGT
43061088 TTA-ATAA
1 TTAGATAA
43061095 ACAAACCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:43066825 original size:47 final size:47
Alignment explanation
Indices: 43066773--43067320 Score: 855
Period size: 47 Copynumber: 11.6 Consensus size: 47
43066763 GATAATTGTG
* * *
43066773 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
43066820 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
43066869 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGGTGT-ATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
43066915 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
43066964 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
43067011 ATGTGAAAGTGTATATATGTGATGAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
43067058 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
43067105 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
43067154 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
43067201 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
43067248 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
43067295 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
43067321 TCCCGAAGGG
Statistics
Matches: 467, Mismatches: 27, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
46 15 0.03
47 317 0.68
48 29 0.06
49 106 0.23
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:43067176 original size:190 final size:190
Alignment explanation
Indices: 43066773--43067320 Score: 924
Period size: 190 Copynumber: 2.9 Consensus size: 190
43066763 GATAATTGTG
* * * *
43066773 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATAT
*
43066838 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
64 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
43066903 GCCGGTGT-ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
129 GCCGGTGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
43066964 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
*
43067029 GTGATGAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGC
66 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGC
43067094 CGGTGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 CGGTGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
43067154 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
43067219 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCCGAGTGG
66 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGA-GGCCTAATGG
*** *
43067283 CCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
130 CCGGTGTGATGAATGTGAAAGTGTATATATATGTGATAAG
43067321 TCCCGAAGGG
Statistics
Matches: 341, Mismatches: 14, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
188 10 0.03
189 78 0.23
190 199 0.58
191 54 0.16
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (190 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGC
CGGTGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:43069391 original size:40 final size:39
Alignment explanation
Indices: 43069346--43069430 Score: 107
Period size: 39 Copynumber: 2.2 Consensus size: 39
43069336 AAGTGACCAT
*
43069346 ATCCGGACTAAGATCCGAAGACATTCGTGCGAGATACTAA
1 ATCCGGACTAAG-CCCGAAGACATTCGTGCGAGATACTAA
* * * * *
43069386 TTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGACTAAGCCCGAAGACATTCGTGCGAGATACTAA
43069425 ATCCGG
1 ATCCGG
43069431 GTTAAGTCCC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 28 0.74
40 10 0.26
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (39 bp):
ATCCGGACTAAGCCCGAAGACATTCGTGCGAGATACTAA
Found at i:43069740 original size:40 final size:40
Alignment explanation
Indices: 43069307--43069728 Score: 464
Period size: 40 Copynumber: 10.6 Consensus size: 40
43069297 TCGAATGATG
* **
43069307 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTA
* * *
43069347 TCCGGACTAAGAT-CCGAAGA-CATTCGTGCGAGAT-ACT-AA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAG-TGA-TGTA
* * * **
43069386 TTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TGTA
* * *
43069426 TCCGGGTTAAGTCCCAAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
43069466 TCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
43069506 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
**
43069546 TCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
43069586 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
43069626 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * *
43069666 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
43069706 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
43069729 ATCATGCTGG
Statistics
Matches: 339, Mismatches: 32, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
38 1 0.00
39 31 0.09
40 287 0.85
41 20 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:43073089 original size:47 final size:47
Alignment explanation
Indices: 43073037--43073583 Score: 837
Period size: 47 Copynumber: 11.6 Consensus size: 47
43073027 GATAATTGTG
* * *
43073037 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
43073084 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
43073133 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGGTGT-ATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
43073179 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
43073228 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
43073275 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
43073322 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
43073369 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
43073418 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
43073465 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGAT-A
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
43073511 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
43073558 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
43073584 TCCCGAAGGG
Statistics
Matches: 461, Mismatches: 31, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
46 54 0.12
47 272 0.59
48 29 0.06
49 106 0.23
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:43073139 original size:96 final size:96
Alignment explanation
Indices: 43073037--43073583 Score: 858
Period size: 96 Copynumber: 5.8 Consensus size: 96
43073027 GATAATTGTG
* * *
43073037 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
43073102 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
43073133 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGGTGT-ATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
43073197 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
43073228 ATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
43073291 ATGTGATAAGGCCTAATAGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
43073322 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
43073387 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
43073418 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
43073481 ATGTGATGAGGCCTAATGGCCGATGTGAT-A
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
43073511 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
43073574 ATGTGATAAG
66 ATGTGATAAG
43073584 TCCCGAAGGG
Statistics
Matches: 418, Mismatches: 28, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
93 60 0.14
94 122 0.29
95 93 0.22
96 143 0.34
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:43080147 original size:13 final size:13
Alignment explanation
Indices: 43080131--43080163 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
43080121 TTTAATTAAA
*
43080131 TTAGTTAATTAGT
1 TTAGATAATTAGT
43080144 TTAGATAATTAGT
1 TTAGATAATTAGT
43080157 TTA-ATAA
1 TTAGATAA
43080164 ACAAACCCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:43080653 original size:14 final size:14
Alignment explanation
Indices: 43080609--43080654 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
43080599 GGATTTTAAG
*
43080609 AATTTATATTTGAA
1 AATTTTTATTTGAA
* **
43080623 ATTTTTTATTTCTA
1 AATTTTTATTTGAA
43080637 AATTTTTATTTGAA
1 AATTTTTATTTGAA
43080651 AATT
1 AATT
43080655 AAAATATTTC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (14 bp):
AATTTTTATTTGAA
Found at i:43085804 original size:6 final size:6
Alignment explanation
Indices: 43085793--43085819 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
43085783 TTTTTCTCTC
43085793 TCTATA TCTATA TCTATA TCTATA TCT
1 TCTATA TCTATA TCTATA TCTATA TCT
43085820 GTCTCAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.52
Consensus pattern (6 bp):
TCTATA
Found at i:43089375 original size:37 final size:37
Alignment explanation
Indices: 43089325--43089437 Score: 208
Period size: 37 Copynumber: 3.1 Consensus size: 37
43089315 CTATGATTCT
*
43089325 AACTCATCTTTACATATATATAGGAGAATAGCAGGAG
1 AACTCATCTTTACATATACATAGGAGAATAGCAGGAG
43089362 AACTCATCTTTACATATACATAGGAGAATAGCAGGAG
1 AACTCATCTTTACATATACATAGGAGAATAGCAGGAG
*
43089399 AACTCATCTTTACATATACATAGGAGAATAGCATGAG
1 AACTCATCTTTACATATACATAGGAGAATAGCAGGAG
43089436 AA
1 AA
43089438 TAGAGAATGA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.26
Consensus pattern (37 bp):
AACTCATCTTTACATATACATAGGAGAATAGCAGGAG
Found at i:43089617 original size:14 final size:15
Alignment explanation
Indices: 43089598--43089626 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
43089588 TTAACTGAAC
43089598 ATTTTAAATA-ATTT
1 ATTTTAAATATATTT
43089612 ATTTTAAATATATTT
1 ATTTTAAATATATTT
43089627 TTTAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTTAAATATATTT
Found at i:43089975 original size:26 final size:25
Alignment explanation
Indices: 43089919--43089977 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
43089909 TATGTTTGTA
*
43089919 TATTTTTTTAATTTAAAGGGATTAG
1 TATTTTTTTAATATAAAGGGATTAG
43089944 TATTTTTTTAA-ATAGAAGGGATTAG
1 TATTTTTTTAATATA-AAGGGATTAG
43089969 T-TTTTTTTA
1 TATTTTTTTA
43089978 TGTAGTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 10 0.31
25 22 0.69
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (25 bp):
TATTTTTTTAATATAAAGGGATTAG
Found at i:43090083 original size:83 final size:90
Alignment explanation
Indices: 43089983--43090252 Score: 302
Period size: 102 Copynumber: 2.9 Consensus size: 90
43089973 TTTTATGTAG
* *
43089983 TTTTTAATTTATTTTAAAGTTTTTTTGTTAGTAA-T-T-ATTA-TA-A-ATTGTTTGTGTTTAGT
1 TTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTATGATTAGTATATATTGTTTGTGTTTAGT
* *
43090042 TTAGTGTTTATTGTGCTTTTAATTT
66 TTAGTGTTTATTGTGATATTAATTT
43090067 TTTTTAAATT-TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATATATTGTTTGTGTTT
1 TTTTTAAATTATTTTAAAGTTATTTTGTTAGTAA-TTATGATTA-G-TATATATTGTTTGTGTTT
43090131 AGTTTAGTGTTTATTGTGATATTAATTTTTTTATTT
63 AGTTTAGTGTTTATTGTGATATT-A-------ATTT
*
43090167 TTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTT
1 TTTTT-AAATTATTTTAAAGTTATTTTGTTAGTAA-TTATGATTA-G-TATATATTGTTTGTGTT
*
43090232 TAGTTTAGTGCTTATTGTGAT
62 TAGTTTAGTGTTTATTGTGAT
43090253 TTTTTATAAA
Statistics
Matches: 161, Mismatches: 6, Indels: 20
0.86 0.03 0.11
Matches are distributed among these distances:
83 22 0.14
84 9 0.06
85 1 0.01
86 1 0.01
87 4 0.02
90 2 0.01
91 1 0.01
92 34 0.21
93 1 0.01
100 9 0.06
101 5 0.03
102 72 0.45
ACGTcount: A:0.24, C:0.01, G:0.14, T:0.60
Consensus pattern (90 bp):
TTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTATGATTAGTATATATTGTTTGTGTTTAGT
TTAGTGTTTATTGTGATATTAATTT
Found at i:43090200 original size:102 final size:101
Alignment explanation
Indices: 43090058--43090453 Score: 469
Period size: 111 Copynumber: 3.9 Consensus size: 101
43090048 TTTATTGTGC
* *
43090058 TTTTAATTTTTTTT-AAATT-TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATATATT
1 TTTTTATTTTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT
43090121 GTTTGTGTTTAGTTTAGTGTTTATTGTGATATTAATT
66 GTTTGTGTTTAGTTTAGTGTTTATTGTGATA-TAATT
43090158 TTTTTATTTTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT
1 TTTTTATTTTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT
*
43090223 GTTTGTGTTTAGTTTAGTGCTTATTGTGATTTTTTATAAATGT
66 GTTTGTGTTTAGTTTAGTGTTTATTGTGA-----TAT-AAT-T
43090266 AAATTTTT-TTGTTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATA
1 ---TTTTTATT-TTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATA
*
43090330 AATTGTTTGTGTTCAGTTTAGTGTTTATTGTG-----A-T
62 AATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATATAATT
*** ** *
43090364 TTTTTA--TGAATGCAAATTTTTTTAAAGTTATTTTGTTA-TAATTTATGATTAGGTTATAAATT
1 TTTTTATTTTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT
* * *
43090426 -ATT-TGTTTAGTTTAATGTGTATTGTGAT
66 GTTTGTGTTTAGTTTAGTGTTTATTGTGAT
43090454 TTGTTATAAT
Statistics
Matches: 265, Mismatches: 15, Indels: 40
0.83 0.05 0.12
Matches are distributed among these distances:
90 20 0.08
91 2 0.01
92 24 0.09
93 26 0.10
95 5 0.02
98 1 0.00
100 14 0.05
101 5 0.02
102 71 0.27
106 1 0.00
107 5 0.02
108 1 0.00
110 2 0.01
111 88 0.33
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.58
Consensus pattern (101 bp):
TTTTTATTTTTTTTAAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT
GTTTGTGTTTAGTTTAGTGTTTATTGTGATATAATT
Found at i:43090431 original size:92 final size:90
Alignment explanation
Indices: 43090284--43090464 Score: 283
Period size: 92 Copynumber: 2.0 Consensus size: 90
43090274 TTGTTTTTTA
*
43090284 AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTCAGTTT
1 AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGT-TT-AGTTT
* * *
43090349 AGTGTTTATTGTGATTTTTTATGAATGC
64 AATGTGTATTGTGATTTGTTAT-AATGC
*
43090377 AAATTTTTTTAAAGTTATTTTGTTA-TAATTTATGATTAGGTTATAAATTATTTGTTTAGTTTAA
1 AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTTTAGTTTAA
43090441 TGTGTATTGTGATTTGTTATAATG
66 TGTGTATTGTGATTTGTTATAATG
43090465 TAATTTTATT
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
89 4 0.05
90 24 0.29
91 2 0.02
92 29 0.35
93 24 0.29
ACGTcount: A:0.28, C:0.01, G:0.16, T:0.55
Consensus pattern (90 bp):
AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTTTAGTTTAA
TGTGTATTGTGATTTGTTATAATGC
Found at i:43090772 original size:21 final size:22
Alignment explanation
Indices: 43090721--43090773 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
43090711 TTATTGTAAT
* *
43090721 TATATTATTATTGTACTATATT
1 TATAATATTATTGTACTATATG
** *
43090743 TATTGTATTATT-TACTGTATG
1 TATAATATTATTGTACTATATG
43090764 TATAATATTA
1 TATAATATTA
43090774 ATGTGTTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.57
Consensus pattern (22 bp):
TATAATATTATTGTACTATATG
Found at i:43094135 original size:14 final size:13
Alignment explanation
Indices: 43094111--43094145 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
43094101 AAACCTTTAA
*
43094111 TTTTCTCTTCTCT
1 TTTTCTTTTCTCT
43094124 TCTTTCTTTTCTCT
1 T-TTTCTTTTCTCT
43094138 TTTTCTTT
1 TTTTCTTT
43094146 CTTCCTTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTCTTTTCTCT
Found at i:43094145 original size:17 final size:19
Alignment explanation
Indices: 43094111--43094148 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
43094101 AAACCTTTAA
43094111 TTTTCTCTTCTCTTCTTTC
1 TTTTCTCTTCTCTTCTTTC
43094130 TTTTCTCTT-T-TTCTTTC
1 TTTTCTCTTCTCTTCTTTC
43094147 TT
1 TT
43094149 CCTTCCCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 1 0.05
19 9 0.47
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTCTCTTCTCTTCTTTC
Found at i:43094451 original size:25 final size:21
Alignment explanation
Indices: 43094404--43094444 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
43094394 ATTATTTACT
43094404 TAAATAATAAGTGAATACATG
1 TAAATAATAAGTGAATACATG
43094425 TAAATAATAAGTGAATACAT
1 TAAATAATAAGTGAATACAT
43094445 ACATGTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.12, T:0.29
Consensus pattern (21 bp):
TAAATAATAAGTGAATACATG
Found at i:43095546 original size:49 final size:49
Alignment explanation
Indices: 43095486--43095707 Score: 288
Period size: 49 Copynumber: 4.6 Consensus size: 49
43095476 CAAAAATACC
* *
43095486 AACTTCATAATTTAAATTGAGATTCATTGCAACATTAAAAATTGGAACA
1 AACTTCGTAATTTAAATTGAGATTCATTACAACATTAAAAATTGGAACA
43095535 AACTTCGTAATTTAAATTGAGATTCATTACAACATTAAAAATTGGAACA
1 AACTTCGTAATTTAAATTGAGATTCATTACAACATTAAAAATTGGAACA
* * *
43095584 AACTTTGTAATTTAAATTGAGATTCATTACAACATTAAAACTTGGAATA
1 AACTTCGTAATTTAAATTGAGATTCATTACAACATTAAAAATTGGAACA
** * * ** *
43095633 AACTTTATAGTTTAAATT-AGATTAATCGCAACATTAAAAAGAT-GAACAA
1 AACTTCGTAATTTAAATTGAGATTCATTACAACATTAAAAA-TTGGAAC-A
*
43095682 AAATT-GTAATTTAAATTGAGATTCAT
1 AACTTCGTAATTTAAATTGAGATTCAT
43095708 CGGAGTACAT
Statistics
Matches: 153, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
48 31 0.20
49 122 0.80
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.34
Consensus pattern (49 bp):
AACTTCGTAATTTAAATTGAGATTCATTACAACATTAAAAATTGGAACA
Found at i:43097518 original size:15 final size:17
Alignment explanation
Indices: 43097491--43097524 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
43097481 TTTTTACCTC
43097491 TAACACTCCCTAA-TTG
1 TAACACTCCCTAACTTG
43097507 TAACAC-CCCTAACTTG
1 TAACACTCCCTAACTTG
43097523 TA
1 TA
43097525 TCTGCCGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.32, C:0.32, G:0.06, T:0.29
Consensus pattern (17 bp):
TAACACTCCCTAACTTG
Found at i:43100843 original size:28 final size:28
Alignment explanation
Indices: 43100803--43100916 Score: 113
Period size: 28 Copynumber: 4.0 Consensus size: 28
43100793 AGCGTAATTG
*
43100803 TGAATGTGATTTGGGCCTAGT-GGCCATA
1 TGAATGTGA-TTGGGCCTAATGGGCCATA
* *
43100831 TGAATGTGATTTGGGCTTAATGGGCCACA
1 TGAATGTGA-TTGGGCCTAATGGGCCATA
* * **
43100860 TAAATGTGAATGGGCCTAATAAGCCATA
1 TGAATGTGATTGGGCCTAATGGGCCATA
* * *
43100888 TGAAAGAGATTGGGCCTAGTGGGCCATA
1 TGAATGTGATTGGGCCTAATGGGCCATA
43100916 T
1 T
43100917 ATAGGTATGT
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
28 55 0.80
29 14 0.20
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (28 bp):
TGAATGTGATTGGGCCTAATGGGCCATA
Found at i:43101243 original size:27 final size:27
Alignment explanation
Indices: 43101196--43101251 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
43101186 AAAACCGTAA
* * *
43101196 TAAGGGAAAAATTATCGAAAATGCCCC
1 TAAGGGAAAAATTAACCAAAATACCCC
43101223 TAAGGGTAAAAA-TAACCAAAATACCCC
1 TAAGGG-AAAAATTAACCAAAATACCCC
43101250 TA
1 TA
43101252 GGTGTTGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (27 bp):
TAAGGGAAAAATTAACCAAAATACCCC
Found at i:43104673 original size:27 final size:27
Alignment explanation
Indices: 43104642--43104819 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
43104632 TAAATTGTAC
43104642 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
43104669 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
43104695 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
43104723 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
43104751 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
43104778 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
43104805 AGCACTGACTGTGCG
1 AGCACTAAGTGTGCG
43104820 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:43104756 original size:82 final size:81
Alignment explanation
Indices: 43104643--43104798 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
43104633 AAATTGTACA
* *
43104643 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
43104707 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
43104724 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
43104789 TGCGAGTTGA
65 TGCGAATTGA
43104799 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:43109706 original size:27 final size:27
Alignment explanation
Indices: 43109676--43109826 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
43109666 AAATTGTACA
* *
43109676 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
43109703 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
43109730 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
43109757 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
43109785 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
43109812 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
43109827 GATGATTATA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
27 80 0.78
28 22 0.22
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:43109789 original size:82 final size:81
Alignment explanation
Indices: 43109676--43109826 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
43109666 AAATTGTACA
* * * *
43109676 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
43109740 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
43109757 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
43109822 TGCGA
65 TGCGA
43109827 GATGATTATA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 15 0.25
82 46 0.75
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:43109832 original size:27 final size:27
Alignment explanation
Indices: 43109675--43109852 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
43109665 TAAATTGTAC
* **
43109675 AGCACTAAGGGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAGATGACTATGT
* * *
43109702 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGATGACTATGT
* *
43109728 ATGCACTAAGTGTGCGA-ATTGACCATGC
1 A-GCACTAAGTGTGCGAGA-TGACTATGT
* * *
43109756 GGCACTAAGAGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAG-ATGACTATGT
** * *
43109784 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGATGACTATGT
* * *
43109811 GGCACTAAGTGTGCGAGATGATTATAT
1 AGCACTAAGTGTGCGAGATGACTATGT
*
43109838 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
43109853 GGCTCAATAT
Statistics
Matches: 120, Mismatches: 26, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.82
28 21 0.17
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGATGACTATGT
Found at i:43130616 original size:94 final size:93
Alignment explanation
Indices: 43130467--43130732 Score: 272
Period size: 94 Copynumber: 2.8 Consensus size: 93
43130457 TTGTTTGTGG
* * * *
43130467 GCTAGTTTAAGACATGTCTGGGACATGCATCGGCCACA-TTATGAGAGCCATTGTAAGACCATGT
1 GCTAGTCTAAGACATGTCTGGGACATGCATCGGCCTCAGATAT-A-AGCCAATGTAAGACCATGT
* * *
43130531 CTAGGACATGGCAT-TG-TCATTGAGATGAGA
64 CTGGGACATGGCATCAGCT-A-CGAGATGAGA
* * *
43130561 GCTAGTCTAAGACATCTCTGGGACATGCATCGGCCTCAAGACATAAGCCAGTGTAAGA-CATGTC
1 GCTAGTCTAAGACATGTCTGGGACATGCATCGGCCTC-AGATATAAGCCAATGTAAGACCATGTC
*
43130625 TGGGACAT-GCATCAGCTACGAGATGATA
65 TGGGACATGGCATCAGCTACGAGATGAGA
* * * * * * *
43130653 GTTAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGAGATATGAGCCAATGTAAGACCATGT
1 GCTAGTCTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAGATATAAGCCAATGTAAGACCATGT
43130718 CTGGGACATGGCATC
64 CTGGGACATGGCATC
43130733 GGCACCTTAC
Statistics
Matches: 144, Mismatches: 20, Indels: 15
0.80 0.11 0.08
Matches are distributed among these distances:
92 22 0.15
93 45 0.31
94 68 0.47
95 7 0.05
96 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (93 bp):
GCTAGTCTAAGACATGTCTGGGACATGCATCGGCCTCAGATATAAGCCAATGTAAGACCATGTCT
GGGACATGGCATCAGCTACGAGATGAGA
Found at i:43130660 original size:46 final size:46
Alignment explanation
Indices: 43130467--43130735 Score: 199
Period size: 47 Copynumber: 5.7 Consensus size: 46
43130457 TTGTTTGTGG
* * *
43130467 GCTAGTTTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGAGA
* * * * * *
43130513 GCCATTGTAAGACCATGTCTAGGACATGGCATTGTC-ATTGAGATGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATGAGA
* * * *
43130561 GCTAGTCTAAGACATCTCTGGGACATGCATCGGCCTCAAGACAT-A-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CT-ACGAGATGAGA
* * *
43130607 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGA
* * * *
43130653 GTTAGTGTAAGACCATGTCTGGGACATGGCATTGACT-TGAGAT-ATGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGA-GA
* *
43130700 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
43130736 ACCTTACCTA
Statistics
Matches: 176, Mismatches: 35, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
44 5 0.03
45 3 0.02
46 56 0.32
47 79 0.45
48 31 0.18
49 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGA
Found at i:43130726 original size:140 final size:141
Alignment explanation
Indices: 43130474--43130735 Score: 352
Period size: 140 Copynumber: 1.9 Consensus size: 141
43130464 TGGGCTAGTT
* * *
43130474 TAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCATTGTAAGACCATGTCTAGGACA
1 TAAGACATGTCTGGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAGGACA
* * *
43130539 TGGCATTGTCATTGAGATGAGAGCTAGTCTAAGACATCTCTGGGACAT-GCATCGGCCTCAAGAC
66 TGGCATTGACATTGAGATGAGAGCCAATCTAAGACATCTCTGGGACATGGCATCGGCCTCAAGAC
43130603 ATAAGCCAGTG
131 ATAAGCCAGTG
* * ** *
43130614 TAAGACATGTCTGGGACATGCATCAGCTACGA-GATGATAGTTAGTGTAAGACCATGTCTGGGAC
1 TAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGAGAGCCAGTGTAAGACCATGTCTAGGAC
* *
43130678 ATGGCATTGAC-TTGAGAT-ATGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
65 ATGGCATTGACATTGAGATGA-GAGCCAATCTAAGA-CATCTCTGGGACATGGCATCGGC
43130736 ACCTTACCTA
Statistics
Matches: 105, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 77 0.73
141 9 0.09
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (141 bp):
TAAGACATGTCTGGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAGGACA
TGGCATTGACATTGAGATGAGAGCCAATCTAAGACATCTCTGGGACATGGCATCGGCCTCAAGAC
ATAAGCCAGTG
Done.