Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 14 of 295
Found at i:4474163 original size:24 final size:23
Alignment explanation
Indices: 4474131--4474212 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 23
4474121 CTTTGTTTTA
*
4474131 TTATTTTATTATTTTTACTATTAT
1 TTATATTATTATTTTTA-TATTAT
* *
4474155 TTATATTATTATTATTATTTCTCAT
1 TTATATTATTATTTTTATAT-T-AT
*
4474180 GTATA-TATTATTTTTATATTATT
1 TTATATTATTATTTTTATATTA-T
4474203 ATTATATTAT
1 -TTATATTAT
4474213 ATATGCCCTC
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
22 1 0.02
23 4 0.09
24 32 0.70
25 9 0.20
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (23 bp):
TTATATTATTATTTTTATATTAT
Found at i:4474199 original size:11 final size:11
Alignment explanation
Indices: 4474128--4474212 Score: 64
Period size: 11 Copynumber: 7.4 Consensus size: 11
4474118 AAGCTTTGTT
4474128 TTATTATTT-TA
1 TTATT-TTTATA
4474139 TTATTTTTACTA
1 TTATTTTTA-TA
*
4474151 TTATTTATATTA
1 TTATTTTTA-TA
* *
4474163 TTATTATTATT
1 TTATTTTTATA
* *
4474174 TCTCATGTATATA
1 T-T-ATTTTTATA
4474187 TTATTTTTATA
1 TTATTTTTATA
*
4474198 TTATTATTATA
1 TTATTTTTATA
4474209 TTAT
1 TTAT
4474213 ATATGCCCTC
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
10 3 0.05
11 28 0.48
12 21 0.36
13 6 0.10
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (11 bp):
TTATTTTTATA
Found at i:4474454 original size:18 final size:19
Alignment explanation
Indices: 4474418--4474475 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 19
4474408 ACTATTACTA
*
4474418 TTATATATTAGTGTATATTT
1 TTATATA-TAGTATATATTT
*
4474438 TTATGTATA-TATATA--T
1 TTATATATAGTATATATTT
4474454 TTATATATAGTAT-TATTT
1 TTATATATAGTATATATTT
4474472 TTAT
1 TTAT
4474476 TACTTTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 11 0.34
17 3 0.09
18 10 0.31
19 2 0.06
20 6 0.19
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (19 bp):
TTATATATAGTATATATTT
Found at i:4474573 original size:14 final size:14
Alignment explanation
Indices: 4474554--4474585 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
4474544 GTATTTCTAT
4474554 TATATACATATATA
1 TATATACATATATA
*
4474568 TATATACATTTATA
1 TATATACATATATA
4474582 TATA
1 TATA
4474586 GTATTATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (14 bp):
TATATACATATATA
Found at i:4476676 original size:14 final size:14
Alignment explanation
Indices: 4476649--4476695 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
4476639 GACTAAACCT
* *
4476649 TAAACCTAAAACCC
1 TAAACCCAATACCC
*
4476663 TAAGCCCAATACCC
1 TAAACCCAATACCC
*
4476677 TAAACCCAATGCCC
1 TAAACCCAATACCC
4476691 TAAAC
1 TAAAC
4476696 ATTAAACCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.43, C:0.38, G:0.04, T:0.15
Consensus pattern (14 bp):
TAAACCCAATACCC
Found at i:4476763 original size:34 final size:35
Alignment explanation
Indices: 4476705--4476776 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
4476695 CATTAAACCT
4476705 TAAACCCTATAAACTAAATCCTAAACCAAAAACAC
1 TAAACCCTATAAACTAAATCCTAAACCAAAAACAC
* * *
4476740 TAAA-CCT-TAAATCTAAATTCTAAACCATAAACCC
1 TAAACCCTATAAA-CTAAATCCTAAACCAAAAACAC
4476774 TAA
1 TAA
4476777 TTCCATACAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 4 0.12
34 25 0.76
35 4 0.12
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.22
Consensus pattern (35 bp):
TAAACCCTATAAACTAAATCCTAAACCAAAAACAC
Found at i:4480839 original size:41 final size:40
Alignment explanation
Indices: 4480778--4480875 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 40
4480768 GCTGCTCAAC
*
4480778 TTTTTA-TGGCATTTGT-AACAAAAACG-CTGCTATTGCTCAG
1 TTTTTAGTGGCGTTT-TCAACAAAAACGTC-G-TATTGCTCAG
*
4480818 TTTTTAGTGGCGTTTTCAACAAAAATGTCGTATTGCTCAG
1 TTTTTAGTGGCGTTTTCAACAAAAACGTCGTATTGCTCAG
*
4480858 TTTTTTGCT-GCGTTTTCA
1 TTTTTAG-TGGCGTTTTCA
4480876 CTAATGCATA
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
40 32 0.63
41 18 0.35
42 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.43
Consensus pattern (40 bp):
TTTTTAGTGGCGTTTTCAACAAAAACGTCGTATTGCTCAG
Found at i:4480923 original size:12 final size:12
Alignment explanation
Indices: 4480908--4480933 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4480898 TTTTTTGTCC
4480908 AAACGCCACTAA
1 AAACGCCACTAA
4480920 AAACGCCACTAA
1 AAACGCCACTAA
4480932 AA
1 AA
4480934 CCCTATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.31, G:0.08, T:0.08
Consensus pattern (12 bp):
AAACGCCACTAA
Found at i:4483782 original size:12 final size:12
Alignment explanation
Indices: 4483765--4483793 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
4483755 TTCACGATAG
4483765 AAACTCAATTAT
1 AAACTCAATTAT
4483777 AAACTCAATTAT
1 AAACTCAATTAT
4483789 AAACT
1 AAACT
4483794 TAAATACGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (12 bp):
AAACTCAATTAT
Found at i:4483920 original size:25 final size:25
Alignment explanation
Indices: 4483891--4483967 Score: 145
Period size: 25 Copynumber: 3.1 Consensus size: 25
4483881 AGGCATGAAC
4483891 AATGGTGCAGAAAGGCGGGAGGCTA
1 AATGGTGCAGAAAGGCGGGAGGCTA
4483916 AATGGTGCAGAAAGGCGGGAGGCTA
1 AATGGTGCAGAAAGGCGGGAGGCTA
*
4483941 AATGGTGCAGAAAGGTGGGAGGCTA
1 AATGGTGCAGAAAGGCGGGAGGCTA
4483966 AA
1 AA
4483968 ATAATACACC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.34, C:0.10, G:0.43, T:0.13
Consensus pattern (25 bp):
AATGGTGCAGAAAGGCGGGAGGCTA
Found at i:4486368 original size:17 final size:16
Alignment explanation
Indices: 4486346--4486389 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
4486336 TAAATTTATA
4486346 ATATTTTATATTATGTT
1 ATATTTTATATTATG-T
*
4486363 ATATTTATTTATTATGT
1 ATATTT-TATATTATGT
4486380 AT-TTTTATAT
1 ATATTTTATAT
4486390 AGACGAATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 4 0.17
16 3 0.12
17 9 0.38
18 8 0.33
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (16 bp):
ATATTTTATATTATGT
Found at i:4486920 original size:11 final size:11
Alignment explanation
Indices: 4486904--4486929 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4486894 CAATAGGCCA
4486904 ACTAAATACCC
1 ACTAAATACCC
4486915 ACTAAATACCC
1 ACTAAATACCC
4486926 ACTA
1 ACTA
4486930 CACCCTAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (11 bp):
ACTAAATACCC
Found at i:4488487 original size:14 final size:13
Alignment explanation
Indices: 4488449--4488488 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 13
4488439 CATGCATATC
4488449 ATATATATTATGTAA
1 ATATATA-T-TGTAA
4488464 ATATATATTGTAA
1 ATATATATTGTAA
4488477 ATATCATATTGT
1 ATAT-ATATTGT
4488489 TTGTACATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 9 0.38
14 8 0.33
15 7 0.29
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.47
Consensus pattern (13 bp):
ATATATATTGTAA
Found at i:4492505 original size:9 final size:9
Alignment explanation
Indices: 4492491--4492520 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
4492481 ACGCTTTTTT
4492491 GCATTCATC
1 GCATTCATC
4492500 GCATTCATC
1 GCATTCATC
4492509 GCATTCAT-
1 GCATTCATC
4492517 GCAT
1 GCAT
4492521 CAGCATTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.19
9 17 0.81
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.33
Consensus pattern (9 bp):
GCATTCATC
Found at i:4511844 original size:43 final size:44
Alignment explanation
Indices: 4511783--4511869 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 44
4511773 ATTCACCAAG
*
4511783 CCTTAAACCCCTAAGCAGTAGGGTAACAGG-TTAAATTTACAGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTACAGA
* *
4511826 CCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGAAATTTACAGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTACAGA
4511870 TTTCGTCTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 28 0.70
44 12 0.30
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.23
Consensus pattern (44 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTTACAGA
Found at i:4514555 original size:26 final size:25
Alignment explanation
Indices: 4514525--4514590 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 25
4514515 ACATATCCCG
4514525 TATATTTTTAATATATCATATATATA
1 TATATTTTTAATATATCAT-TATATA
** * *
4514551 TATATTTTTGTTTCTATTATTATATA
1 TATATTTTT-AATATATCATTATATA
4514577 TATATATTTTAATA
1 TATAT-TTTTAATA
4514591 CCATATGTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
26 21 0.68
27 10 0.32
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (25 bp):
TATATTTTTAATATATCATTATATA
Found at i:4514602 original size:30 final size:28
Alignment explanation
Indices: 4514543--4514603 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
4514533 TAATATATCA
** **
4514543 TATATATATATATTTTTGTTTCTATTAT
1 TATATATATATATTTTAATACCTATTAT
4514571 TATATATATATATTTTAATACCATATGTAT
1 TATATATATATATTTTAATACC-TAT-TAT
4514601 TAT
1 TAT
4514604 TATCGTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 18 0.67
29 3 0.11
30 6 0.22
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.57
Consensus pattern (28 bp):
TATATATATATATTTTAATACCTATTAT
Found at i:4515729 original size:16 final size:16
Alignment explanation
Indices: 4515693--4515737 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
4515683 ATGTGGGAAA
4515693 ATAAAAATAT-TTTAT
1 ATAAAAATATATTTAT
4515708 ATTAAAAATATATATT-T
1 A-TAAAAATATAT-TTAT
4515725 ATAAAAATATATT
1 ATAAAAATATATT
4515738 AATAAATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 2 0.07
16 20 0.74
17 3 0.11
18 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAAAAATATATTTAT
Found at i:4518471 original size:38 final size:38
Alignment explanation
Indices: 4518429--4518507 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
4518419 AAGACTACAA
4518429 AACGCTTCTTGACAGTTACCAATATGAAATAAGAAACT
1 AACGCTTCTTGACAGTTACCAATATGAAATAAGAAACT
4518467 AACGCTTCTTGACAGTTACCAATATGAAATAAGAAACT
1 AACGCTTCTTGACAGTTACCAATATGAAATAAGAAACT
4518505 AAC
1 AAC
4518508 TTTAAAATGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (38 bp):
AACGCTTCTTGACAGTTACCAATATGAAATAAGAAACT
Found at i:4520065 original size:3 final size:3
Alignment explanation
Indices: 4520059--4520084 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4520049 ACAACACAGT
4520059 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
4520085 GTAGGCATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:4522876 original size:20 final size:20
Alignment explanation
Indices: 4522853--4522895 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
4522843 TTTTATATAC
* * *
4522853 TTTTTAATAATTTTTAATTT
1 TTTTTAAAAAATTATAATTT
4522873 TTTTTAAAAAATTATAATTT
1 TTTTTAAAAAATTATAATTT
4522893 TTT
1 TTT
4522896 GAATTTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTTAAAAAATTATAATTT
Found at i:4525015 original size:15 final size:16
Alignment explanation
Indices: 4524989--4525018 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4524979 TTTTGCCCGG
4524989 CTAAAAAGCTCAACAT
1 CTAAAAAGCTCAACAT
4525005 CTAAAAA-CTCAACA
1 CTAAAAAGCTCAACA
4525019 GCCCAAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.27, G:0.03, T:0.17
Consensus pattern (16 bp):
CTAAAAAGCTCAACAT
Found at i:4525138 original size:13 final size:13
Alignment explanation
Indices: 4525116--4525216 Score: 70
Period size: 13 Copynumber: 7.8 Consensus size: 13
4525106 TCTTCACTCC
*
4525116 AACCAACCCACTA
1 AACCACCCCACTA
4525129 AACCACCCCACTAA
1 AACCACCCCACT-A
4525143 ATCATCTCAACCCCACTA
1 A--A-C-C-ACCCCACTA
4525161 AACCACCCCACTA
1 AACCACCCCACTA
*
4525174 AACCA-TCC-C--
1 AACCACCCCACTA
4525183 AACCA--CCACTA
1 AACCACCCCACTA
*
4525194 AACCATCCCACTA
1 AACCACCCCACTA
*
4525207 AACCATCCCA
1 AACCACCCCA
4525217 ACCACTTCAC
Statistics
Matches: 75, Mismatches: 2, Indels: 22
0.76 0.02 0.22
Matches are distributed among these distances:
8 2 0.03
9 6 0.08
11 6 0.08
12 2 0.03
13 41 0.55
14 3 0.04
15 1 0.01
16 2 0.03
17 1 0.01
18 3 0.04
19 8 0.11
ACGTcount: A:0.40, C:0.49, G:0.00, T:0.12
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:4525159 original size:32 final size:32
Alignment explanation
Indices: 4525118--4525219 Score: 161
Period size: 32 Copynumber: 3.2 Consensus size: 32
4525108 TTCACTCCAA
*
4525118 CCAA-CCCACTAAACCACCCCACTAAATCATC
1 CCAACCCCACTAAACCACCCCACTAAACCATC
*
4525149 TCAACCCCACTAAACCACCCCACTAAACCATC
1 CCAACCCCACTAAACCACCCCACTAAACCATC
*
4525181 CCAACCACCACTAAACCATCCCACTAAACCATC
1 CCAACC-CCACTAAACCACCCCACTAAACCATC
4525214 CCAACC
1 CCAACC
4525220 ACTTCACTTG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
31 3 0.05
32 31 0.48
33 31 0.48
ACGTcount: A:0.38, C:0.50, G:0.00, T:0.12
Consensus pattern (32 bp):
CCAACCCCACTAAACCACCCCACTAAACCATC
Found at i:4525623 original size:19 final size:18
Alignment explanation
Indices: 4525586--4525627 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
4525576 AGGGAGAGTG
*
4525586 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
4525604 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
4525623 TTATT
1 TTATT
4525628 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:4526579 original size:17 final size:17
Alignment explanation
Indices: 4526549--4526586 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
4526539 AAAAGTAATG
4526549 ATATGTAAATAAAATAA
1 ATATGTAAATAAAATAA
*
4526566 ATATGCTAAA-AAAATAT
1 ATATG-TAAATAAAATAA
4526583 ATAT
1 ATAT
4526587 TTATTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.32
Consensus pattern (17 bp):
ATATGTAAATAAAATAA
Found at i:4527170 original size:22 final size:23
Alignment explanation
Indices: 4527139--4527200 Score: 94
Period size: 22 Copynumber: 2.8 Consensus size: 23
4527129 TTTGTAGGCA
*
4527139 AGTGGAGTGGTTGGGA-TGGTTT
1 AGTGGGGTGGTTGGGAGTGGTTT
4527161 AGTGGGGTGGTT-GGAGTGGTTT
1 AGTGGGGTGGTTGGGAGTGGTTT
4527183 AGTGGGGTGGTT-GGAGTG
1 AGTGGGGTGGTTGGGAGTG
4527201 AAGATATTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 3 0.08
22 35 0.92
ACGTcount: A:0.11, C:0.00, G:0.55, T:0.34
Consensus pattern (23 bp):
AGTGGGGTGGTTGGGAGTGGTTT
Found at i:4527289 original size:15 final size:16
Alignment explanation
Indices: 4527269--4527298 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4527259 CTTTGGAGGT
4527269 TGTTGGG-TTTTTAGA
1 TGTTGGGCTTTTTAGA
4527284 TGTTGGGCTTTTTAG
1 TGTTGGGCTTTTTAG
4527299 CTCGGGCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.10, C:0.03, G:0.33, T:0.53
Consensus pattern (16 bp):
TGTTGGGCTTTTTAGA
Found at i:4530313 original size:28 final size:28
Alignment explanation
Indices: 4530280--4530337 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
4530270 GAAAAGAGGA
4530280 TAAACTACCTTGTTAGTCATTCTAAAAT
1 TAAACTACCTTGTTAGTCATTCTAAAAT
4530308 TAAACTACCTTGTTAGTCATTCTAAAAT
1 TAAACTACCTTGTTAGTCATTCTAAAAT
4530336 TA
1 TA
4530338 GGTTGTCCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.07, T:0.40
Consensus pattern (28 bp):
TAAACTACCTTGTTAGTCATTCTAAAAT
Found at i:4530820 original size:22 final size:22
Alignment explanation
Indices: 4530789--4530830 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
4530779 TTTGATGATC
4530789 ACAACAGTGAT-AGTGAGAAGCG
1 ACAACAGTGATAAG-GAGAAGCG
*
4530811 ACAACTGTGATAAGGAGAAG
1 ACAACAGTGATAAGGAGAAG
4530831 AAAGGAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.43, C:0.12, G:0.31, T:0.14
Consensus pattern (22 bp):
ACAACAGTGATAAGGAGAAGCG
Found at i:4534770 original size:18 final size:17
Alignment explanation
Indices: 4534734--4534772 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
4534724 ATATATTAAA
*
4534734 TTTTTTATTTATAATAT
1 TTTTTTATTTATAAAAT
*
4534751 TTTTTTATTTTTGAAAAT
1 TTTTTTATTTAT-AAAAT
4534769 TTTT
1 TTTT
4534773 AAATTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (17 bp):
TTTTTTATTTATAAAAT
Found at i:4540083 original size:16 final size:16
Alignment explanation
Indices: 4540062--4540110 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 16
4540052 AAGTAATGAA
4540062 GAAAATATGTTTTATT
1 GAAAATATGTTTTATT
* *
4540078 G-AAA-AT-TTTGA-A
1 GAAAATATGTTTTATT
4540090 GAAAATATGTTTTATT
1 GAAAATATGTTTTATT
4540106 GAAAA
1 GAAAA
4540111 ATTTTAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
12 1 0.04
13 7 0.28
14 4 0.16
15 7 0.28
16 6 0.24
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (16 bp):
GAAAATATGTTTTATT
Found at i:4540089 original size:28 final size:29
Alignment explanation
Indices: 4540058--4540115 Score: 109
Period size: 28 Copynumber: 2.0 Consensus size: 29
4540048 ATGAAAGTAA
4540058 TGAAGAAAATATGTTTTATTG-AAAATTT
1 TGAAGAAAATATGTTTTATTGAAAAATTT
4540086 TGAAGAAAATATGTTTTATTGAAAAATTT
1 TGAAGAAAATATGTTTTATTGAAAAATTT
4540115 T
1 T
4540116 AAAAATAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 21 0.72
29 8 0.28
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (29 bp):
TGAAGAAAATATGTTTTATTGAAAAATTT
Found at i:4543268 original size:20 final size:19
Alignment explanation
Indices: 4543245--4543291 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
4543235 AAAAAATATA
4543245 TTTATTTTTATGTTTAAGTT
1 TTTATTTTTA-GTTTAAGTT
*
4543265 TTTACTTTTTAGTTTTAGTT
1 TTTA-TTTTTAGTTTAAGTT
*
4543285 TTCATTT
1 TTTATTT
4543292 CCCAATCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 15 0.62
21 6 0.25
ACGTcount: A:0.17, C:0.04, G:0.09, T:0.70
Consensus pattern (19 bp):
TTTATTTTTAGTTTAAGTT
Found at i:4545154 original size:18 final size:17
Alignment explanation
Indices: 4545118--4545180 Score: 81
Period size: 17 Copynumber: 3.5 Consensus size: 17
4545108 TTCGGTCCTC
4545118 ATAGATTTTTTACTGTA
1 ATAGATTTTTTACTGTA
*
4545135 ATAGATTTTTTATTGCTA
1 ATAGATTTTTTACTG-TA
4545153 ATAGATTTTTATTCACTGTA
1 ATAGA-TTTT-TT-ACTGTA
4545173 ATAGATTT
1 ATAGATTT
4545181 CATTAATTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
17 14 0.35
18 7 0.17
19 7 0.17
20 9 0.22
21 3 0.08
ACGTcount: A:0.30, C:0.06, G:0.11, T:0.52
Consensus pattern (17 bp):
ATAGATTTTTTACTGTA
Found at i:4545940 original size:98 final size:92
Alignment explanation
Indices: 4545564--4545956 Score: 642
Period size: 92 Copynumber: 4.2 Consensus size: 92
4545554 TACAATTTTT
* *
4545564 AACCTATTTGTATATTTAATAAAATATGAACCTATTTGTATCAAAGTATGCATATAAGCTACAAT
1 AACCTATTTTTATATTTAATAAAATATAAACCTATTTGTATCAAAGTATGCATATAAGCTACAAT
* *
4545629 TTAGACAACAAGTATGCATTTTGTTTG
66 TTAAACAGCAAGTATGCATTTTGTTTG
*
4545656 AACCTGTTTTTATATTTAATAAAATATAAACCTATTTGTATCAAAGTATGCATATAAGCTACAAT
1 AACCTATTTTTATATTTAATAAAATATAAACCTATTTGTATCAAAGTATGCATATAAGCTACAAT
*
4545721 TTAAACAGCAATTATGCATTTTGTTTG
66 TTAAACAGCAAGTATGCATTTTGTTTG
*
4545748 AACCTATTTTTATATTTAATAAAATATAAACCTATTTGTATCAAAGTATGCATGTAAGCTACAAT
1 AACCTATTTTTATATTTAATAAAATATAAACCTATTTGTATCAAAGTATGCATATAAGCTACAAT
4545813 TTAAACAGCAAGTATGCATTTTGTTTG
66 TTAAACAGCAAGTATGCATTTTGTTTG
* *
4545840 AACCTATTTGTATATTTAATAAAATATGAACCTATTTGTATCAAAATCAAAGTATGCATATAAGC
1 AACCTATTTTTATATTTAATAAAATATAAACCTATTTG--T----ATCAAAGTATGCATATAAGC
4545905 TACAATTTAAACAGCAAGTATGCATTTTGTTTG
60 TACAATTTAAACAGCAAGTATGCATTTTGTTTG
*
4545938 AACATATTTTTATATTTAA
1 AACCTATTTTTATATTTAA
4545957 ACAGCAAGTA
Statistics
Matches: 281, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
92 211 0.75
94 1 0.00
98 69 0.25
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (92 bp):
AACCTATTTTTATATTTAATAAAATATAAACCTATTTGTATCAAAGTATGCATATAAGCTACAAT
TTAAACAGCAAGTATGCATTTTGTTTG
Found at i:4548093 original size:9 final size:9
Alignment explanation
Indices: 4548079--4548116 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
4548069 CAAAAATGAT
4548079 GATGACGAC
1 GATGACGAC
4548088 GATGACGAC
1 GATGACGAC
*
4548097 GATGACGAT
1 GATGACGAC
4548106 GATGACGAC
1 GATGACGAC
4548115 GA
1 GA
4548117 GGTTTCTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.34, C:0.18, G:0.34, T:0.13
Consensus pattern (9 bp):
GATGACGAC
Found at i:4549199 original size:9 final size:9
Alignment explanation
Indices: 4549185--4549219 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
4549175 TTTTGTTACA
4549185 ACAATTAAT
1 ACAATTAAT
4549194 ACAATT-A-
1 ACAATTAAT
4549201 ACAATTAAT
1 ACAATTAAT
4549210 ACAATTAAT
1 ACAATTAAT
4549219 A
1 A
4549220 ATTTGATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 6 0.25
8 2 0.08
9 16 0.67
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.31
Consensus pattern (9 bp):
ACAATTAAT
Found at i:4549205 original size:16 final size:16
Alignment explanation
Indices: 4549184--4549222 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
4549174 ATTTTGTTAC
4549184 AACAATTAATACAATT
1 AACAATTAATACAATT
4549200 AACAATTAATACAATT
1 AACAATTAATACAATT
*
4549216 AATAATT
1 AACAATT
4549223 TGATAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33
Consensus pattern (16 bp):
AACAATTAATACAATT
Found at i:4549313 original size:16 final size:16
Alignment explanation
Indices: 4549292--4549325 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
4549282 AATAATTTGA
*
4549292 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
4549308 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
4549324 TA
1 TA
4549326 GTTTCAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:4550430 original size:21 final size:21
Alignment explanation
Indices: 4550392--4550431 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
4550382 CAAGCATGTT
*
4550392 AATTATAATTTTTTAAATAAA
1 AATTATAATTTTTAAAATAAA
4550413 AATTAT-ATTTATTAAAATA
1 AATTATAATTT-TTAAAATA
4550432 TTATTTGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
AATTATAATTTTTAAAATAAA
Found at i:4554083 original size:21 final size:22
Alignment explanation
Indices: 4554057--4554103 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
4554047 TTAGTAAAGG
4554057 GGAAAAAT-TAGAG-TTTTACAT
1 GGAAAAATATA-AGTTTTTACAT
4554078 GGAAAAATATAAGTTTTTACAT
1 GGAAAAATATAAGTTTTTACAT
4554100 GGAA
1 GGAA
4554104 TTGAGTTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (22 bp):
GGAAAAATATAAGTTTTTACAT
Found at i:4559349 original size:22 final size:23
Alignment explanation
Indices: 4559305--4559349 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
4559295 AAAACCCTAG
*
4559305 CTTTTTCTCCTTTTTTTTCTTTC
1 CTTTTTCTCCTTTTGTTTCTTTC
4559328 CTTTTTC-CC-TTTGTTTCATTTC
1 CTTTTTCTCCTTTTGTTTC-TTTC
4559350 AACTTTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 7 0.35
22 6 0.30
23 7 0.35
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (23 bp):
CTTTTTCTCCTTTTGTTTCTTTC
Found at i:4562423 original size:13 final size:13
Alignment explanation
Indices: 4562405--4562457 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
4562395 TATTATGTAT
4562405 ATTTAATCAATTA
1 ATTTAATCAATTA
* *
4562418 ATTTAATTAATTG
1 ATTTAATCAATTA
*
4562431 ATTTAACTAAATTA
1 ATTTAA-TCAATTA
*
4562445 ATTT-CTCAATTA
1 ATTTAATCAATTA
4562457 A
1 A
4562458 AATATTTTCT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
12 7 0.21
13 17 0.52
14 9 0.27
ACGTcount: A:0.43, C:0.08, G:0.02, T:0.47
Consensus pattern (13 bp):
ATTTAATCAATTA
Found at i:4564902 original size:7 final size:7
Alignment explanation
Indices: 4564892--4564985 Score: 59
Period size: 7 Copynumber: 13.3 Consensus size: 7
4564882 TTCTTATGTT
4564892 TTATATA
1 TTATATA
4564899 TTATATA
1 TTATATA
*
4564906 TAATATA
1 TTATATA
*
4564913 ATATAATA
1 TTAT-ATA
*
4564921 TAATAATA
1 TTAT-ATA
*
4564929 TAATATA
1 TTATATA
4564936 TTATATA
1 TTATATA
4564943 TTA-ATA
1 TTATATA
*
4564949 CTTAAATA
1 -TTATATA
4564957 TTA-AGT-
1 TTATA-TA
*
4564963 TAATATA
1 TTATATA
*
4564970 ATATATA
1 TTATATA
*
4564977 ATATATA
1 TTATATA
4564984 TT
1 TT
4564986 TTTATATAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
6 7 0.10
7 48 0.68
8 16 0.23
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (7 bp):
TTATATA
Found at i:4564911 original size:5 final size:5
Alignment explanation
Indices: 4564894--4564940 Score: 55
Period size: 5 Copynumber: 10.0 Consensus size: 5
4564884 CTTATGTTTT
* *
4564894 ATATA TTAT- ATATA ATATA ATATA ATAT- A-ATA ATATA ATATA TTATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
4564941 TATTAATACT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
3 2 0.06
4 5 0.14
5 29 0.81
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (5 bp):
ATATA
Found at i:4564928 original size:8 final size:9
Alignment explanation
Indices: 4564893--4564948 Score: 60
Period size: 10 Copynumber: 6.0 Consensus size: 9
4564883 TCTTATGTTT
*
4564893 TATATATTA
1 TATATAATA
4564902 TATATAATA
1 TATATAATA
4564911 TAATATAATA
1 T-ATATAATA
4564921 TA-ATAATA
1 TATATAATA
*
4564929 TAATATATTA
1 T-ATATAATA
4564939 TATATTAATA
1 TATA-TAATA
4564949 CTTAAATATT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
8 7 0.17
9 14 0.35
10 19 0.47
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (9 bp):
TATATAATA
Found at i:4566479 original size:15 final size:15
Alignment explanation
Indices: 4566455--4566488 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
4566445 AACAATTACG
* *
4566455 ATAATGCGAGTAAAA
1 ATAATACGAGCAAAA
4566470 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
4566485 ATAA
1 ATAA
4566489 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:4567499 original size:9 final size:8
Alignment explanation
Indices: 4567482--4567506 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
4567472 TTCTATAAAC
4567482 AACAAAAA
1 AACAAAAA
4567490 AACAAAAA
1 AACAAAAA
4567498 AACAAAAA
1 AACAAAAA
4567506 A
1 A
4567507 GTCCTCTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (8 bp):
AACAAAAA
Found at i:4568868 original size:130 final size:130
Alignment explanation
Indices: 4568535--4568927 Score: 470
Period size: 134 Copynumber: 3.0 Consensus size: 130
4568525 TGGATGTGAT
* ** *
4568535 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGCTCTTCACTCTATTCCACTGTTGCCTAGGG
1 CTGCTCCACTAATGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTGTTGCCCAGGG
** *
4568600 AGATAGAACTACCAGCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATCTTCG
66 AGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCA--GGGAGGTAAAATCTGCCATCTTCA
*
4568665 AT
129 AC
* * * * ** *
4568667 CTGCTTCGCTGCCAAATAC--AGGAAGGCAAGATCTGCAATCTTCACTCTATTCCACTGTTGCCC
1 CTGC-TC-C--ACTAATGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTGTTGCCC
* *
4568730 AGGGAGATAGAACTACTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCCGCCATCTT
62 AGGGAGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTT
4568795 CAAC
127 CAAC
*
4568799 CTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGA-TCTATTCCACTGTTGCCCAGG
1 CTGCTCCACTAATGCTTAGGGAGATAAGATCTGTAATCTTC-ACTCTATTCCACTGTTGCCCAGG
* * * *
4568863 AAGATAGAACTA-TCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATCTT
65 GAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAAT--CAGGGAGGTAAAATCTGCCATCTT
4568927 C
127 C
4568928 GATCTACTTC
Statistics
Matches: 220, Mismatches: 31, Indels: 20
0.81 0.11 0.07
Matches are distributed among these distances:
128 4 0.02
129 1 0.00
130 74 0.34
131 3 0.01
132 54 0.25
133 2 0.01
134 78 0.35
136 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (130 bp):
CTGCTCCACTAATGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTGTTGCCCAGGG
AGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTTCAAC
Found at i:4568989 original size:46 final size:46
Alignment explanation
Indices: 4568908--4569404 Score: 237
Period size: 46 Copynumber: 11.0 Consensus size: 46
4568898 AGTCACAGAG
* * * *
4568908 AGGTAAAATCTGCCATCTTCGATCTACTT-CGCTGCCAAATACAGGA
1 AGGTAAGATCTGCAATCTTCAATCTA-TTCCACTGCCAAATACAGGA
*
4568954 AGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA-GA
1 AGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
* * * * * * *
4568999 GAGATAGAGTTATCGGC--T-TT-AATGTACTCCACTG--TAGT-CAGGG
1 -AGGTA-AG--ATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
* * ** * *
4569042 AGGTAAAATCTGCCATCTTTGATCTGCTT-CGCTGCCAAATACAGGA
1 AGGTAAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGA
* * *
4569088 AGGCAAGATCTGCAATCTTAAATCTATTCCACTGCCAAATACAGGG
1 AGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
* * * ** * * * *
4569134 AGATAGAGTTAT-C-GGCTTCAATGTACTCCACTG--TAGTCACATGG-
1 AGGTA-AGATCTGCAATCTTCAATCTATTCCACTGCCAAAT-ACA-GGA
* * ** * *
4569178 AGGTAAAATCTGCCATCTTTGATCTGCTT-CGCTGCCAAATACAGGA
1 AGGTAAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGA
* *
4569224 AGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGG
1 AGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
* * * ** * * * *
4569270 AGATAGAGTTAT-C-GGCTTCAATGTACTCCACTG--TAGTCACATGG-
1 AGGTA-AGATCTGCAATCTTCAATCTATTCCACTGCCAAAT-ACA-GGA
* * ** *
4569314 AGGTAAAATCTGCCATCTTTGATCTACTT-CGCTGCCAAATACAGGA
1 AGGTAAGATCTGCAATCTTCAATCTA-TTCCACTGCCAAATACAGGA
*
4569360 AGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGG
1 AGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGG
4569405 GAGATAGAGT
Statistics
Matches: 322, Mismatches: 94, Indels: 70
0.66 0.19 0.14
Matches are distributed among these distances:
39 5 0.02
41 2 0.01
42 8 0.02
43 20 0.06
44 17 0.05
45 84 0.26
46 166 0.52
47 15 0.05
49 5 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (46 bp):
AGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
Found at i:4569030 original size:136 final size:135
Alignment explanation
Indices: 4568596--4569536 Score: 1235
Period size: 136 Copynumber: 7.0 Consensus size: 135
4568586 ACTGTTGCCT
** * * * * **
4568596 AGGGAGATAGAACTACCAGCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCA-CAGGAGGTAAAATCTGCCATC
* *
4568661 TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCACTCTATTCCACTG--
65 TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
*****
4568724 TTGCCC
130 AAATAC
** * * * * *
4568730 AGGGAGATAGAACTA-CTGGCTTTAATGTACTCCACCGTAATCA-GGGAGGTAAAATCCGCCATC
1 AGGGAGATAGAGTTATC-GGCTTCAATGTACTCCACTGTAGTCACAGGAGGTAAAATCTGCCATC
** * * * * * * ** * *
4568793 TTCAACCTGC-TC-C--ACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTATTCCACTG
65 TTTGATCTGCTTCGCTGCCAAATAC--AGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
*****
4568854 --TTGCCC
128 CCAAATAC
* **
4568860 AGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACAG-GAGGTAAAATCTGCCATC
* *
4568925 TTCGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
65 TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
4568990 AAATAC
130 AAATAC
* * *
4568996 AGAGAGATAGAGTTATCGGCTTTAATGTACTCCACTGTAGTCA-GGGAGGTAAAATCTGCCATCT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACAGGAGGTAAAATCTGCCATCT
*
4569060 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCACTGCCA
66 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
4569125 AATAC
131 AATAC
4569130 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACA-GGAGGTAAAATCTGCCATC
4569195 TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
65 TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
4569260 AAATAC
130 AAATAC
4569266 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACA-GGAGGTAAAATCTGCCATC
*
4569331 TTTGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
65 TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
4569396 AAATAC
130 AAATAC
4569402 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACA-GGAGGTAAAATCTGCCATC
* * *
4569467 TTTGATCTGCTTCGCTGCCAAATATAGGAGGGCAAGATCTGCAATCTTCGATCTACTT-CAC-GC
65 TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACTGC
4569530 C-AATAC
129 CAAATAC
4569536 A
1 A
4569537 TGAAGATAAG
Statistics
Matches: 736, Mismatches: 56, Indels: 30
0.90 0.07 0.04
Matches are distributed among these distances:
128 4 0.01
130 76 0.10
131 4 0.01
132 51 0.07
133 3 0.00
134 206 0.28
135 4 0.01
136 386 0.52
137 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (135 bp):
AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACAGGAGGTAAAATCTGCCATCT
TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
AATAC
Found at i:4569365 original size:406 final size:397
Alignment explanation
Indices: 4568614--4569514 Score: 1241
Period size: 406 Copynumber: 2.2 Consensus size: 397
4568604 AGAACTACCA
* * *
4568614 GCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGC
1 GCTTCAATGTACTCCACTGTAGTCA--GGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGC
* * *** *
4568679 CAAATACAGGAAGGCAAGATCTGCAATCTTCACTCTATTCCACTGTTGCCCAGGGAGATAGAACT
64 CAAATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCACTGAAACACAGGGAGATAGAACT
* *
4568744 ACTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCCGCCATCTTCAACCTGCTCCACT
129 ACTGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCCGCCATCTTCAACCTGCTCCACA
* * * * * * *** *
4568809 ATTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGAAGATAGAACT
194 AATAC-TAGGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGAAACACAGGAAGATAGAACT
4568874 ATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATCTTCGATCTACTTCG
258 ATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATCTTCGATCTACTTCG
4568939 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGAGAGAT
323 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGAGAGAT
4569004 AGAGTTATCG
388 AGAGTTATCG
*
4569014 GCTTTAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
1 GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
* **
4569079 AATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
66 AATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCACTG--AAACACAGGGAGATAGAACT
* * * * ** *
4569144 A-TCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTTC
129 ACT-GGCTTCAATGTACTCCACCGTAAT--CAGGGAGGTAAAATCCGCCATCTTCAACCTGC-TC
* * * *
4569208 GCTGCCAAATAC-AGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAG
190 -C--ACAAATACTAGGAAGACAAGATCTGCAATCTTCAATCTATTCCACTG--AAACACAGGAAG
** *
4569272 ATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATG-GAGGTAAAATCTGCCATCTTTGA
250 ATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACA-GAGAGGTAAAATCTGCCATCTTCGA
4569336 TCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATA
314 TCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATA
*
4569401 CAGGGAGATAGAGTTATCG
379 CAGAGAGATAGAGTTATCG
*
4569420 GCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGC
1 GCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGC
* *
4569485 CAAATATAGGAGGGCAAGATCTGCAATCTT
64 CAAATACAGGAAGGCAAGATCTGCAATCTT
4569515 CGATCTACTT
Statistics
Matches: 443, Mismatches: 44, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
398 80 0.18
399 1 0.00
400 57 0.13
402 27 0.06
403 2 0.00
404 34 0.08
406 174 0.39
407 1 0.00
408 67 0.15
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (397 bp):
GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
AATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCACTGAAACACAGGGAGATAGAACTAC
TGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCCGCCATCTTCAACCTGCTCCACAAA
TACTAGGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGAAACACAGGAAGATAGAACTATC
GGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATCTTCGATCTACTTCGCTG
CCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGA
GTTATCG
Found at i:4570134 original size:308 final size:307
Alignment explanation
Indices: 4569662--4570828 Score: 1332
Period size: 308 Copynumber: 3.8 Consensus size: 307
4569652 CTACTTCACG
* * * * * **
4569662 CCAATACATGAAGACAAGATCTGCTTTCTGT-GATCTACTTCGCCACCAATATGGGAAGACAAGA
1 CCAATATAGGAAGACAAGACCTGCTATCT-TCGATCTACTTC-ACACCAATACAGGAAGACAAGA
* * * * *
4569726 TCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACTT-T-CGATCTAC
64 TCTGCTATCTTCGATCTACTTCCTACCAATACATGAAGACAAGATCTGCT--TTCTGCGATCTAC
* * * * * * * ** * * *
4569788 TTC-ACGCCAATACATGAAGACAAGATTTGCTTTCTTCGATTTATTTCGCCACCAATATGGGAAG
127 TTCGCCACCAATATAGGAAGACAAGATCTGC-ATCGTCGATCCACTTC-CTACCAATATAGGAAG
* * * * * * * * * * * *
4569852 ACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATC
190 ACAGGACCTGCATCTTCGATCTACTTCCTGCCAATACATGAAGACAAGATCTGTTTTCTGCGATC
* * * *** *** * *
4569917 TACTTC-ACGCCAATACATGAAGACAAGATCTATTTTC-TGCGATCTACTTCGCCA
255 TACTTCGCCACCAGTATGGGAAGACAAGATCT-GCGTCGT-CGATCCACTTC-CTA
* * * * * * * * *
4569971 CCAGTATGGGAAGACAAGATCTGC-GTCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGAC
1 CCAATATAGGAAGACAAGACCTGCTATCTTCGATCTACTTCAC-ACCAATACAGGAAGACAAGAT
** * *
4570034 CTGCTATCTTCGATCTACTTCCCGCCAATATATGAAGACAAGATCTGTTTTCTGCGATCTACTTC
65 CTGCTATCTTCGATCTACTTCCTACCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * * *
4570099 GCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
130 GCCACCAATATAGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGG
4570164 ACCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTAC
195 ACCTGC-ATCTTCGATCTACTTC-CTGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTAC
4570228 TTCGCCACCAGTATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTA
258 TTCGCCACCAGTATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTA
* * * *
4570278 CCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAAGACCTGCTATCTTCGATCTACTTCACACCAATACAGGAAGACAAGATC
* *
4570343 TGCTTTCTTCGATCTACTTCCTACCAATACATGAAGACAAGATTTGCTTTCTGCGATCTACTTCG
66 TGCTATCTTCGATCTACTTCCTACCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCG
* * *
4570408 CCACCAATATAGGAAGACAAGATCTGCATCGTCGATCCCCTTCCTACCAATATAGGAAAACCGGA
131 CCACCAATATAGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGGA
* * *
4570473 CCTGTTATCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTT
196 CCTG-CATCTTCGATCTACTTCCTGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTT
4570538 CGCCACCAGTATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTA
260 CGCCACCAGTATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTA
* * * *
4570586 CCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAAGACCTGCTATCTTCGATCTACTTCACACCAATACAGGAAGACAAGATC
*
4570651 TGCTTTCTTCGATCTACTTCCTACCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCG
66 TGCTATCTTCGATCTACTTCCTACCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCG
* *
4570716 CCACCAATATAGGAAGACAAGATCTGCATCGTCGATCCCCTTCCTACCAATATAGGAAAACCA-G
131 CCACCAATATAGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGA-CAGG
* * *
4570780 ACCTGTTATCTTTGATCTACTTCAC-GCTAATACATGAAGACAAGATCTG
195 ACCTG-CATCTTCGATCTACTTC-CTGCCAATACATGAAGACAAGATCTG
4570829 CTTTAATGAC
Statistics
Matches: 755, Mismatches: 87, Indels: 33
0.86 0.10 0.04
Matches are distributed among these distances:
306 3 0.00
307 66 0.09
308 623 0.83
309 63 0.08
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (307 bp):
CCAATATAGGAAGACAAGACCTGCTATCTTCGATCTACTTCACACCAATACAGGAAGACAAGATC
TGCTATCTTCGATCTACTTCCTACCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCG
CCACCAATATAGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGGA
CCTGCATCTTCGATCTACTTCCTGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTC
GCCACCAGTATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTA
Found at i:4570443 original size:132 final size:132
Alignment explanation
Indices: 4569505--4570742 Score: 1479
Period size: 132 Copynumber: 9.4 Consensus size: 132
4569495 AGGGCAAGAT
* *
4569505 CTGCAATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* *
4569570 GCCACCAGTATGGGAAGACAAGATCTGCAATCTTCGATCCACTTCCTATCAATATAGGAAGATAG
66 GCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
4569635 GAC
130 GAC
*
4569638 CTACTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGT-GATCTACTT
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT-TCGATCTACTT
4569702 CGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
65 CGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
*
4569767 GAT
130 GAC
* * *
4569770 CTGCTA-CTTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTCTTCGATTTATTT
1 CTGCTATC-TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT
4569834 CGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
65 CGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
4569899 GAC
130 GAC
** *
4569902 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTATTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* *
4569967 GCCACCAGTATGGGAAGACAAGATCTGCGTCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
4570032 AC
131 AC
* * * *
4570034 CTGCTATCTTCGATCTACTTCCCGCCAATATATGAAGACAAGATCTGTTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
*
4570099 GCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
4570164 AC
131 AC
* *
4570166 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* * *
4570231 GCCACCAGTATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
4570296 AC
131 AC
4570298 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* *** * * * * * *
4570363 -CTACCAATACATGAAGACAAGATTTGCTTTCTGCGATCTACTTCGCCACCAATATAGGAAGACA
66 GCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATA
* *
4570427 AGAT
129 GGAC
* ** * * * * ** * *
4570431 CTGC-ATCGTCGATCCCCTTC-CTACCAATATAGGAAAACCGGACCTG-TTATCTTTGATCTACT
1 CTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTT-TCTTCGATCTACT
*** *** ** * * * * *
4570493 TC-ATGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAGTATGGGAAGA
64 TCGCCACCAATATGGGAAGACAAGATCTG-CATCTTCGATCCACTTC-CTACCAATATAGGAAGA
* * *
4570557 CAAGAT
127 TAGGAC
* * * * * * * * * *
4570563 CTGC-GTCGTCGATCCACTTC-CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTT
1 CTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT
* * *** * * * * *
4570626 C-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCCTACCAATACATGAAGACA
65 CGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATA
* *
4570690 AGAT
129 GGAC
* * * * * *
4570694 CTGCTTTCTGCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGC
1 CTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGC
4570743 ATCGTCGATC
Statistics
Matches: 1009, Mismatches: 82, Indels: 28
0.90 0.07 0.03
Matches are distributed among these distances:
131 48 0.05
132 825 0.82
133 134 0.13
134 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (132 bp):
CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
AC
Found at i:4571853 original size:12 final size:12
Alignment explanation
Indices: 4571836--4571891 Score: 67
Period size: 12 Copynumber: 4.4 Consensus size: 12
4571826 TGGCCTCTCC
4571836 TTTTTCTTTTCT
1 TTTTTCTTTTCT
4571848 TTTTTCTTTTCT
1 TTTTTCTTTTCT
* *
4571860 TTTTCATTTTTTCA
1 TTTT--TCTTTTCT
4571874 TTTTTCTTTTCAT
1 TTTTTCTTTTC-T
4571887 TTTTT
1 TTTTT
4571892 TAAGTGAAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
12 22 0.59
13 5 0.14
14 10 0.27
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTTCTTTTCT
Found at i:4571877 original size:20 final size:19
Alignment explanation
Indices: 4571837--4571891 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 19
4571827 GGCCTCTCCT
4571837 TTTTC-TTTTC-TTTTTTC
1 TTTTCTTTTTCATTTTTTC
4571854 TTTTCTTTTTCATTTTTTC
1 TTTTCTTTTTCATTTTTTC
4571873 ATTTT-TCTTTTCATTTTTT
1 -TTTTCT-TTTTCATTTTTT
4571892 TAAGTGAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.15
18 5 0.15
19 8 0.24
20 16 0.47
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTCTTTTTCATTTTTTC
Found at i:4572361 original size:13 final size:13
Alignment explanation
Indices: 4572343--4572375 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
4572333 GTTTTTTTAC
4572343 TTTTTTTGTC-CT
1 TTTTTTTGTCTCT
4572355 TTTTTTTGTCTCT
1 TTTTTTTGTCTCT
4572368 TTTTTTTG
1 TTTTTTTG
4572376 CCTCCACTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.00, C:0.12, G:0.09, T:0.79
Consensus pattern (13 bp):
TTTTTTTGTCTCT
Found at i:4573704 original size:61 final size:62
Alignment explanation
Indices: 4573603--4573724 Score: 210
Period size: 61 Copynumber: 2.0 Consensus size: 62
4573593 TCTAAACTCG
* *
4573603 ACGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTGATGCATGAAC
1 ACGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTAATGAATGAAC
*
4573665 ACGTA-TTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAA
1 ACGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTAATGAATGAA
4573725 GAGATACGTG
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
61 52 0.91
62 5 0.09
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.40
Consensus pattern (62 bp):
ACGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTAATGAATGAAC
Found at i:4575671 original size:15 final size:15
Alignment explanation
Indices: 4575647--4575680 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
4575637 AACAATTACG
* *
4575647 ATAATGCGAGTAAAA
1 ATAATACGAGCAAAA
4575662 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
4575677 ATAA
1 ATAA
4575681 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:4576691 original size:9 final size:8
Alignment explanation
Indices: 4576674--4576698 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
4576664 TTCTATAAAC
4576674 AACAAAAA
1 AACAAAAA
4576682 AACAAAAA
1 AACAAAAA
4576690 AACAAAAA
1 AACAAAAA
4576698 A
1 A
4576699 GTCCTCTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (8 bp):
AACAAAAA
Found at i:4579324 original size:22 final size:23
Alignment explanation
Indices: 4579297--4579347 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
4579287 TAATCAATAT
*
4579297 ATACATAACTACAATTAGAATCA
1 ATACATAACTACAACTAGAATCA
* *
4579320 A-ACATAAGTACAACTATAATCA
1 ATACATAACTACAACTAGAATCA
4579342 ATACAT
1 ATACAT
4579348 CCGTTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.53, C:0.18, G:0.04, T:0.25
Consensus pattern (23 bp):
ATACATAACTACAACTAGAATCA
Found at i:4583249 original size:28 final size:30
Alignment explanation
Indices: 4583218--4583278 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
4583208 GCCCTTGCTC
*
4583218 TTATTAAAAATTAA-AAAAAT-TAGAAAAA
1 TTATTAAAAATTAATAAAAATATAAAAAAA
**
4583246 TTATTAAATTTTAATAAAAATATAAAAAAA
1 TTATTAAAAATTAATAAAAATATAAAAAAA
4583276 TTA
1 TTA
4583279 GAATTTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 12 0.43
29 6 0.21
30 10 0.36
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (30 bp):
TTATTAAAAATTAATAAAAATATAAAAAAA
Found at i:4583293 original size:17 final size:17
Alignment explanation
Indices: 4583271--4583309 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
4583261 AAAAATATAA
4583271 AAAAATTAGAATTTTTT
1 AAAAATTAGAATTTTTT
4583288 AAAAATTAGAATTTTTT
1 AAAAATTAGAATTTTTT
4583305 AAAAA
1 AAAAA
4583310 ATCATAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (17 bp):
AAAAATTAGAATTTTTT
Found at i:4583337 original size:36 final size:35
Alignment explanation
Indices: 4583288--4583355 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
4583278 AGAATTTTTT
* *
4583288 AAAAATTAGAATTTTTTAAAAAATCA-TAAAAATAA
1 AAAAATTAAAATTTTAT-AAAAATCATTAAAAATAA
4583323 AAAAATTTAAAATTTTATAAAAATCATTAAAAA
1 AAAAA-TTAAAATTTTATAAAAATCATTAAAAA
4583356 AATTAACGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
35 13 0.45
36 16 0.55
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.32
Consensus pattern (35 bp):
AAAAATTAAAATTTTATAAAAATCATTAAAAATAA
Found at i:4583616 original size:19 final size:19
Alignment explanation
Indices: 4583566--4583636 Score: 60
Period size: 19 Copynumber: 3.8 Consensus size: 19
4583556 TTTCTATATA
*
4583566 TTTTATA-ATTTTTA-AGGT
1 TTTTATATATTTTTACA-AT
* *
4583584 TTTTATAAAATTTTACAAT
1 TTTTATATATTTTTACAAT
4583603 TTTTATATATTTTT-CTAAT
1 TTTTATATATTTTTAC-AAT
4583622 TTTTA-ATAATTTTTA
1 TTTTATAT-ATTTTTA
4583637 ATATTTGAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
18 10 0.23
19 33 0.75
20 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTTATATATTTTTACAAT
Found at i:4583623 original size:9 final size:9
Alignment explanation
Indices: 4583541--4583636 Score: 72
Period size: 9 Copynumber: 10.4 Consensus size: 9
4583531 TTCTTACGAC
*
4583541 TTTATAAAT
1 TTTATAATT
4583550 TTTAT-ATT
1 TTTATAATT
*
4583558 TCTAT-ATAT
1 TTTATAAT-T
4583567 TTTATAATT
1 TTTATAATT
*
4583576 TTTA-AGGTT
1 TTTATA-ATT
*
4583585 TTTATAAAAT
1 TTTAT-AATT
*
4583595 TTTACAATT
1 TTTATAATT
4583604 TTTATATATT
1 TTTATA-ATT
*
4583614 TTTCTAATT
1 TTTATAATT
4583623 TTTAATAATT
1 TTT-ATAATT
4583633 TTTA
1 TTTA
4583637 ATATTTGAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
8 9 0.13
9 36 0.52
10 23 0.33
11 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTATAATT
Found at i:4583642 original size:19 final size:19
Alignment explanation
Indices: 4583600--4583666 Score: 52
Period size: 19 Copynumber: 3.6 Consensus size: 19
4583590 AAAATTTTAC
*
4583600 AATTTTTATATATTTTT-CT
1 AATTTTTA-ATATTTTTAAT
4583619 AATTTTTAATAATTTTTAAT
1 AATTTTTAAT-ATTTTTAAT
*
4583639 -A-TTTGAAT-TTTTTAAAT
1 AATTTTTAATATTTTT-AAT
*
4583656 AATATTTAATA
1 AATTTTTAATA
4583667 CTATTTATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
16 5 0.13
17 3 0.08
18 9 0.24
19 20 0.53
20 1 0.03
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (19 bp):
AATTTTTAATATTTTTAAT
Found at i:4583664 original size:37 final size:38
Alignment explanation
Indices: 4583618--4583689 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 38
4583608 TATATTTTTC
* *
4583618 TAATTTTTAATAATTTTTAAT-ATTTGAATTTTTTAAA
1 TAATATTTAATAATATTTAATGATTTGAATTTTTTAAA
* * *
4583655 TAATATTTAATACTATTTATTGATTTTAATTTTTT
1 TAATATTTAATAATATTTAATGATTTGAATTTTTT
4583690 TTTCTAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 17 0.59
38 12 0.41
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (38 bp):
TAATATTTAATAATATTTAATGATTTGAATTTTTTAAA
Found at i:4583863 original size:89 final size:91
Alignment explanation
Indices: 4583706--4583922 Score: 279
Period size: 89 Copynumber: 2.5 Consensus size: 91
4583696 ATTTGTAATG
* * * *
4583706 AAAGTAGGGGCATAATTGTTTTTTTTTGAAAAAGTTTTAGGGTCTTTTTGATGCATTTTGAAAGT
1 AAAGTAGGGGCATAATTGTTTTTTTTTGAAAAAGTTTGAGGGCCATTTTGATGCATTTTGAAAAT
* *
4583771 TCAAGTACCTAATTGAGTGCAAAAAA
66 TCAAGTACCCAAATGAGTGCAAAAAA
* *
4583797 AAAGTAGGGGCTTAATTG-TTTTTTTT-AAAAGGTTTGAGGGCCATTTTGATGCATTTTGAAAAT
1 AAAGTAGGGGCATAATTGTTTTTTTTTGAAAAAGTTTGAGGGCCATTTTGATGCATTTTGAAAAT
4583860 TCAAGTACCCAAATGAGTGC--AAAA
66 TCAAGTACCCAAATGAGTGCAAAAAA
** *
4583884 AAA--A-GGGTTTAATTG-CTTTTTTTGAAAAAGTTTGAGGGC
1 AAAGTAGGGGCATAATTGTTTTTTTTTGAAAAAGTTTGAGGGC
4583923 TTTTTGCACC
Statistics
Matches: 114, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
84 17 0.15
85 15 0.13
87 7 0.06
89 50 0.44
90 8 0.07
91 17 0.15
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (91 bp):
AAAGTAGGGGCATAATTGTTTTTTTTTGAAAAAGTTTGAGGGCCATTTTGATGCATTTTGAAAAT
TCAAGTACCCAAATGAGTGCAAAAAA
Found at i:4590273 original size:14 final size:14
Alignment explanation
Indices: 4590254--4590283 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4590244 TAAGAAAGGA
4590254 GGCATGACTATTGT
1 GGCATGACTATTGT
*
4590268 GGCATGACTGTTGT
1 GGCATGACTATTGT
4590282 GG
1 GG
4590284 TTAATGAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.13, G:0.37, T:0.33
Consensus pattern (14 bp):
GGCATGACTATTGT
Found at i:4594378 original size:18 final size:17
Alignment explanation
Indices: 4594357--4594409 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
4594347 TCAATATATG
4594357 TTTTATTCATTATATTAT
1 TTTTATT-ATTATATTAT
*
4594375 TTTTATTATATATATTAA
1 TTTTATTAT-TATATTAT
*
4594393 TTGTATTATT-TATTAT
1 TTTTATTATTATATTAT
4594409 T
1 T
4594410 ATGTACATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 6 0.19
17 3 0.10
18 22 0.71
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTTATTATTATATTAT
Found at i:4596107 original size:46 final size:46
Alignment explanation
Indices: 4596055--4596230 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
4596045 TATTTGGGCA
*
4596055 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
4596101 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
4596146 CATTC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAG
1 --TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
4596194 CCCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
4596231 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:4601296 original size:17 final size:17
Alignment explanation
Indices: 4601265--4601312 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
4601255 TTTGAGTCCA
* *
4601265 TTTATTTTCACTTTGTT
1 TTTATTTTTATTTTGTT
* *
4601282 TTTCTTTTTCTTTTGTT
1 TTTATTTTTATTTTGTT
4601299 TTTATTTTTATTTT
1 TTTATTTTTATTTT
4601313 TATTTCTCAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.08, C:0.08, G:0.04, T:0.79
Consensus pattern (17 bp):
TTTATTTTTATTTTGTT
Found at i:4604586 original size:9 final size:9
Alignment explanation
Indices: 4604572--4604600 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
4604562 ATTTTATGCT
4604572 AATATTTTA
1 AATATTTTA
4604581 AATATTTTA
1 AATATTTTA
4604590 AATATTTTA
1 AATATTTTA
4604599 AA
1 AA
4604601 AATAAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
AATATTTTA
Found at i:4609066 original size:113 final size:113
Alignment explanation
Indices: 4608868--4609420 Score: 908
Period size: 113 Copynumber: 4.9 Consensus size: 113
4608858 CAATAAGCAA
* * *
4608868 TAGCGGCGTTTTTTAAAAAGCGCCGCAAAAAACCTAATCCAAAACAACGCAGTTTTGTGAGCTTT
1 TAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCAGTTTTGTGAGCTTT
4608933 GTGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTT
66 GTGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTT
*
4608981 TAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACATAATCCAAAACGACGCAGTTTTGTGAGCTTT
1 TAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCAGTTTTGTGAGCTTT
*
4609046 GTGGATTTAGCGGCATTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTT
66 GTGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTT
*
4609094 TAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGATGCAGTTTTGTGAGCTTT
1 TAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCAGTTTTGTGAGCTTT
*
4609159 GTGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCACGGCTT
66 GTGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTT
* * **
4609207 TAGCGGCGTTTTTAAGATAGCGCCGCAAAAAACCTAATGTAAAACGACGCAGTTTTCGTGAGCTT
1 TAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCAGTTTT-GTGAGCTT
* * *
4609272 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATACTCAGGGCTT
65 T-GTGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTT
* *
4609322 TAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCCGTTTTGTGAGCTTT
1 TAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCAGTTTTGTGAGCTTT
* * *
4609387 CGGGGATTTAGCGGCGTTTTTTAGAAAGCGCCGC
66 -GTGGATTTAGCGGCGTTTTTAAGGAAGCGCCGC
4609421 AAAAAACCTA
Statistics
Matches: 413, Mismatches: 25, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
113 268 0.65
114 51 0.12
115 94 0.23
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (113 bp):
TAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCAGTTTTGTGAGCTTT
GTGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTT
Found at i:4609439 original size:73 final size:73
Alignment explanation
Indices: 4609320--4609478 Score: 237
Period size: 73 Copynumber: 2.2 Consensus size: 73
4609310 TACTCAGGGC
* * *
4609320 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACACCGTTTTGTGAGCT
4609385 TTCGGGGA
66 TTCGGGGA
* * * * *
4609393 TTTAGCGGCGTTTTTTAGAAAGCGCCGCAAAAAACCTAAGCCAAAACTACACCTTTTTTTGCGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACACCGTTTTGTGAGCT
4609458 TTCGGGGA
66 TTCGGGGA
*
4609466 TTTAGCGGTGTTT
1 TTTAGCGGCGTTT
4609479 AATTGATTTA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (73 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACACCGTTTTGTGAGCT
TTCGGGGA
Found at i:4609863 original size:17 final size:17
Alignment explanation
Indices: 4609832--4609875 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
4609822 TAGGGAGTAT
4609832 TTATGGATT--TAGGGA
1 TTATGGATTAATAGGGA
4609847 TTATGGATTAATAGGGA
1 TTATGGATTAATAGGGA
*
4609864 TTATGGTTTAAT
1 TTATGGATTAAT
4609876 TAAGGGTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 9 0.35
17 17 0.65
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (17 bp):
TTATGGATTAATAGGGA
Found at i:4610186 original size:14 final size:15
Alignment explanation
Indices: 4610156--4610193 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
4610146 CTACTACATA
4610156 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
*
4610171 TATGGA-TTAGGTAT
1 TATGGATTTAGGGAT
4610185 TATGG-TTTA
1 TATGGATTTA
4610194 ATTAAGGGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:4610268 original size:14 final size:14
Alignment explanation
Indices: 4610223--4610271 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
4610213 GATTTAAGGT
4610223 TTAGGGGTTAAGAG
1 TTAGGGGTTAAGAG
4610237 TTTAGGGGTT-AGACG
1 -TTAGGGGTTAAGA-G
*
4610252 TTAGTGGTTAAGAG
1 TTAGGGGTTAAGAG
4610266 TTAGGG
1 TTAGGG
4610272 ATTTAGGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 17 0.57
15 13 0.43
ACGTcount: A:0.24, C:0.02, G:0.41, T:0.33
Consensus pattern (14 bp):
TTAGGGGTTAAGAG
Found at i:4610284 original size:29 final size:30
Alignment explanation
Indices: 4610213--4610284 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 30
4610203 CGTTGGTCGA
*
4610213 GATTTAAGGTTTAGGGGTTAAGAGTTTAGG
1 GATTTAGGGTTTAGGGGTTAAGAGTTTAGG
* * *
4610243 G-GTTAGACG-TTAGTGGTTAAGAG-TTAGG
1 GATTTAG-GGTTTAGGGGTTAAGAGTTTAGG
4610271 GATTTAGGGTTTAG
1 GATTTAGGGTTTAG
4610285 AGTTTTAGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
28 7 0.21
29 24 0.73
30 2 0.06
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (30 bp):
GATTTAGGGTTTAGGGGTTAAGAGTTTAGG
Found at i:4610754 original size:47 final size:46
Alignment explanation
Indices: 4610689--4610789 Score: 157
Period size: 47 Copynumber: 2.2 Consensus size: 46
4610679 AATAATGAAA
* *
4610689 TAAAAACACTAAACTTTTAATTTTATCTAATTTTTATAAATATTACT
1 TAAAAA-ACTAAACTTTTAAATTTATCTAATTTTTATAAATATAACT
*
4610736 TAAAAAACTAAAATTTTTAAATTTATCTAATTTTTATAAATATAACT
1 TAAAAAACT-AAACTTTTAAATTTATCTAATTTTTATAAATATAACT
4610783 TAAAAAA
1 TAAAAAA
4610790 ACCTATGTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
46 3 0.06
47 47 0.94
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (46 bp):
TAAAAAACTAAACTTTTAAATTTATCTAATTTTTATAAATATAACT
Found at i:4613921 original size:14 final size:14
Alignment explanation
Indices: 4613902--4613931 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
4613892 ACATAAAGCA
4613902 ACTAACCTTTTCCC
1 ACTAACCTTTTCCC
4613916 ACTAACCTTTTCCC
1 ACTAACCTTTTCCC
4613930 AC
1 AC
4613932 ACCTAATCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.43, G:0.00, T:0.33
Consensus pattern (14 bp):
ACTAACCTTTTCCC
Found at i:4615113 original size:15 final size:15
Alignment explanation
Indices: 4615093--4615122 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4615083 GAGTTGAAAG
4615093 TGAAGAAGAAGATGA
1 TGAAGAAGAAGATGA
*
4615108 TGAAGATGAAGATGA
1 TGAAGAAGAAGATGA
4615123 AGATGATCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (15 bp):
TGAAGAAGAAGATGA
Found at i:4615379 original size:16 final size:16
Alignment explanation
Indices: 4615355--4615388 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4615345 TAATACTAAT
*
4615355 TAATTTTTTATATTAA
1 TAATGTTTTATATTAA
*
4615371 TAATGTTTTATTTTAA
1 TAATGTTTTATATTAA
4615387 TA
1 TA
4615389 TTTAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TAATGTTTTATATTAA
Found at i:4615567 original size:43 final size:43
Alignment explanation
Indices: 4615460--4615643 Score: 199
Period size: 43 Copynumber: 4.3 Consensus size: 43
4615450 ATGGTGTTTT
* ** * * * *
4615460 TAGCGGCGTTTGTAATCAAAGCGTCGCTAAAGGTCTTTGATCTA
1 TAGCGGCGTTTGTTAGAAAAGCGCCGCTAAAGATC-CTGAGCTA
* * * * *
4615504 TAGTGGCGTTTG-TGGTAAAAGCGTCGCTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGTTAG-AAAAGCGCCGCTAAAGATCCTGAGCTA
* **
4615547 TAGTGGCGTTTGTTAGAAAAGCGCCGCTAAAGATCCCAAGCTA
1 TAGCGGCGTTTGTTAGAAAAGCGCCGCTAAAGATCCTGAGCTA
*
4615590 TAGCGGCGTTTGTTAGAAAAGCGCCGCTAAAGATCCTGATCTA
1 TAGCGGCGTTTGTTAGAAAAGCGCCGCTAAAGATCCTGAGCTA
4615633 TAGCGGCGTTT
1 TAGCGGCGTTT
4615644 ATTTCTAAAA
Statistics
Matches: 122, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
43 91 0.75
44 31 0.25
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (43 bp):
TAGCGGCGTTTGTTAGAAAAGCGCCGCTAAAGATCCTGAGCTA
Found at i:4617021 original size:28 final size:29
Alignment explanation
Indices: 4616976--4617030 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
4616966 CAAAAAGTAT
*
4616976 TTTATGTATATATTTATT-ATTTAAATGG
1 TTTATGTATATATTTATTGATTAAAATGG
*
4617004 TTTATTTATAT-TTATATTGATTAAAAT
1 TTTATGTATATATT-TATTGATTAAAAT
4617031 ACAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (29 bp):
TTTATGTATATATTTATTGATTAAAATGG
Found at i:4617440 original size:29 final size:28
Alignment explanation
Indices: 4617400--4617475 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 28
4617390 TTAGTGGGTA
4617400 AAGGTTAAGGGTTATGGATGATGGGTTT
1 AAGGTTAAGGGTTATGGATGATGGGTTT
* * *
4617428 AAGGATTAAGGGTCATGGGTTATGGGTTT
1 AAGG-TTAAGGGTTATGGATGATGGGTTT
*
4617457 AATGGTTAAAGGGATATGG
1 AA-GGTT-AAGGGTTATGG
4617476 GTTAGGGGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.10
29 25 0.62
30 11 0.28
ACGTcount: A:0.28, C:0.01, G:0.38, T:0.33
Consensus pattern (28 bp):
AAGGTTAAGGGTTATGGATGATGGGTTT
Found at i:4617640 original size:8 final size:7
Alignment explanation
Indices: 4617590--4617638 Score: 62
Period size: 7 Copynumber: 6.9 Consensus size: 7
4617580 TTAATGGTTG
4617590 GGGTTTA
1 GGGTTTA
*
4617597 AGGTTTA
1 GGGTTTA
4617604 GGGTTTA
1 GGGTTTA
*
4617611 GGGGTTA
1 GGGTTTA
*
4617618 GTGGATTA
1 G-GGTTTA
4617626 GGGTTTA
1 GGGTTTA
4617633 GGGTTT
1 GGGTTT
4617639 TATATACAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
7 30 0.83
8 6 0.17
ACGTcount: A:0.16, C:0.00, G:0.43, T:0.41
Consensus pattern (7 bp):
GGGTTTA
Found at i:4617960 original size:26 final size:27
Alignment explanation
Indices: 4617887--4617961 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
4617877 AATAATTTAA
*
4617887 AATTTTAAAGATTTCAAA-TTTAGAAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
4617913 AAATTTCAAGATTTCAAATTTTA-AAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
4617939 AATTTTCAATATTTCAAATTTTA
1 AATTTTCAAGATTTCAAATTTTA
4617962 TCTAATTCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 40 0.91
27 4 0.09
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (27 bp):
AATTTTCAAGATTTCAAATTTTAGAAT
Found at i:4618103 original size:18 final size:18
Alignment explanation
Indices: 4618061--4618106 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 18
4618051 GTTTTTAAGG
*
4618061 TATATAGTTGATTTTTTAAT
1 TATATA-TT-ATTTTTAAAT
4618081 T-TATATTATTTTTAAAT
1 TATATATTATTTTTAAAT
4618098 TATATATTA
1 TATATATTA
4618107 AATAAATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 10 0.42
18 9 0.38
19 4 0.17
20 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (18 bp):
TATATATTATTTTTAAAT
Found at i:4618578 original size:14 final size:13
Alignment explanation
Indices: 4618541--4618574 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
4618531 CCTTAAGTGT
4618541 TTTTCCCCTAAAA
1 TTTTCCCCTAAAA
*
4618554 CTTTCCCCTAAAA
1 TTTTCCCCTAAAA
4618567 TTTTCCCC
1 TTTTCCCC
4618575 CTAACCCTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.38
Consensus pattern (13 bp):
TTTTCCCCTAAAA
Found at i:4622228 original size:9 final size:9
Alignment explanation
Indices: 4622214--4622330 Score: 99
Period size: 9 Copynumber: 12.3 Consensus size: 9
4622204 CTTAAAGAAA
4622214 TTACATAAC
1 TTACATAAC
4622223 TTACATAAC
1 TTACATAAC
* *
4622232 TCATATAAC
1 TTACATAAC
*
4622241 TTACATAAT
1 TTACATAAC
4622250 TTACATAACAAC
1 TTACAT---AAC
4622262 TTACATAAC
1 TTACATAAC
*
4622271 TCACATAAC
1 TTACATAAC
**
4622280 TTACATAGT
1 TTACATAAC
*
4622289 TTACATATC
1 TTACATAAC
*
4622298 TCACATAAC
1 TTACATAAC
*
4622307 GTACATAACAAC
1 TTACAT---AAC
4622319 TTACATAAC
1 TTACATAAC
4622328 TTA
1 TTA
4622331 ACTAATACAT
Statistics
Matches: 85, Mismatches: 17, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
9 69 0.81
12 16 0.19
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.32
Consensus pattern (9 bp):
TTACATAAC
Found at i:4622272 original size:39 final size:39
Alignment explanation
Indices: 4622220--4622295 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
4622210 GAAATTACAT
*
4622220 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
*
4622259 AACTTACATAACTCACATAACTTACATAGTTTACATA
1 AACTTACATAACTCACATAACTTACATAATTTACATA
4622296 TCTCACATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.33
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:4622304 original size:57 final size:57
Alignment explanation
Indices: 4622216--4622328 Score: 154
Period size: 57 Copynumber: 2.0 Consensus size: 57
4622206 TAAAGAAATT
* * **
4622216 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
** * *
4622273 ACATAACTTACATAGTTTACATATCTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
4622329 TAACTAATAC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.44, C:0.23, G:0.02, T:0.31
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:4628233 original size:31 final size:31
Alignment explanation
Indices: 4628187--4628253 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
4628177 GGTTGTATTT
* *
4628187 TTTTATGCTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
* * * *
4628218 TTTTATACTATATTTGTTGTATTTGGTTGGA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
4628249 TTTTA
1 TTTTA
4628254 ATGCAGGAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.07, G:0.18, T:0.57
Consensus pattern (31 bp):
TTTTATACTAAATTTGCTGTATTTGGCTGCA
Found at i:4628437 original size:86 final size:86
Alignment explanation
Indices: 4628330--4628490 Score: 295
Period size: 86 Copynumber: 1.9 Consensus size: 86
4628320 GAAAAAGCGT
4628330 CGCTAAAAGCCTTGACTTTTAGCGGCGCTTCTCCCACAAACGCCACTAAAATCCTTGACTTTTAG
1 CGCTAAAAGCCTTGACTTTTAGCGGCGCTTCTCCCACAAACGCCACTAAAATCCTTGACTTTTAG
4628395 CGACGCTTTTCCCACAAACGC
66 CGACGCTTTTCCCACAAACGC
* *
4628416 CGCTAAAAGCCTTGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAATCCTTGACTTTTAG
1 CGCTAAAAGCCTTGACTTTTAGCGGCGCTTCTCCCACAAACGCCACTAAAATCCTTGACTTTTAG
*
4628481 CGACGTTTTT
66 CGACGCTTTT
4628491 TTAATAAACG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 72 1.00
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (86 bp):
CGCTAAAAGCCTTGACTTTTAGCGGCGCTTCTCCCACAAACGCCACTAAAATCCTTGACTTTTAG
CGACGCTTTTCCCACAAACGC
Found at i:4628502 original size:43 final size:43
Alignment explanation
Indices: 4628330--4628490 Score: 259
Period size: 43 Copynumber: 3.7 Consensus size: 43
4628320 GAAAAAGCGT
* *
4628330 CGCTAAAAGCCTTGACTTTTAGCGGCGCTTCTCCCACAAACGC
1 CGCTAAAAGCCTTGACTTTTAGCGACGCTTTTCCCACAAACGC
* *
4628373 CACTAAAATCCTTGACTTTTAGCGACGCTTTTCCCACAAACGC
1 CGCTAAAAGCCTTGACTTTTAGCGACGCTTTTCCCACAAACGC
*
4628416 CGCTAAAAGCCTTGACTTTTAGCGGCGCTTTTCCCACAAACGC
1 CGCTAAAAGCCTTGACTTTTAGCGACGCTTTTCCCACAAACGC
* *
4628459 CGCTAAAATCCTTGACTTTTAGCGACGTTTTT
1 CGCTAAAAGCCTTGACTTTTAGCGACGCTTTT
4628491 TTAATAAACG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 108 1.00
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (43 bp):
CGCTAAAAGCCTTGACTTTTAGCGACGCTTTTCCCACAAACGC
Found at i:4635585 original size:37 final size:39
Alignment explanation
Indices: 4635539--4635612 Score: 100
Period size: 38 Copynumber: 1.9 Consensus size: 39
4635529 ATGTGAAAAT
* *
4635539 TAAATTTTACA-ATTTTTACAATTTAGT-CTATAAAATTC
1 TAAATTTTACATAGTTTTACAATTCAGTCCTA-AAAATTC
4635577 TAAA-TTTACATAGTTTTACAATTCAGTCCTAAAAAT
1 TAAATTTTACATAGTTTTACAATTCAGTCCTAAAAAT
4635613 CAGATATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
37 6 0.19
38 23 0.72
39 3 0.09
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.43
Consensus pattern (39 bp):
TAAATTTTACATAGTTTTACAATTCAGTCCTAAAAATTC
Found at i:4637991 original size:20 final size:21
Alignment explanation
Indices: 4637968--4638016 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
4637958 AATTATATTG
*
4637968 AATTGAAAAAAAATAT-AGTT
1 AATTGAAAAAAAATATGAATT
**
4637988 AATT-AATTAAAATATGAATT
1 AATTGAAAAAAAATATGAATT
4638008 AATTGAAAA
1 AATTGAAAA
4638017 CTGAAAAGTG
Statistics
Matches: 22, Mismatches: 5, Indels: 3
0.73 0.17 0.10
Matches are distributed among these distances:
19 9 0.41
20 11 0.50
21 2 0.09
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (21 bp):
AATTGAAAAAAAATATGAATT
Found at i:4638202 original size:6 final size:6
Alignment explanation
Indices: 4638191--4638218 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
4638181 TGTCGGATAT
4638191 TGTTAC TGTTAC TGTTAC TGTTAC TGTT
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTT
4638219 CCGGATTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.18, T:0.54
Consensus pattern (6 bp):
TGTTAC
Found at i:4638655 original size:18 final size:18
Alignment explanation
Indices: 4638382--4638659 Score: 191
Period size: 18 Copynumber: 15.1 Consensus size: 18
4638372 AAAGGTATAA
*
4638382 AATAACTGATTATTACTG
1 AATAACTGATTGTTACTG
* * * *
4638400 AATAATTGACTATTACCG
1 AATAACTGATTGTTACTG
* *
4638418 AATAAGTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
4638436 AATAACTGAATATTACTG
1 AATAACTGATTGTTACTG
* **
4638454 AATAATTGATCATTACTG
1 AATAACTGATTGTTACTG
* *
4638472 AATAACTGATTGTCATTG
1 AATAACTGATTGTTACTG
* *
4638490 AATGACTGACTGTTACTG
1 AATAACTGATTGTTACTG
*
4638508 AATAACTTAATTGTTACTG
1 AATAAC-TGATTGTTACTG
*
4638527 AATATCTGATT-TTACTG
1 AATAACTGATTGTTACTG
* *
4638544 AATAATTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
4638562 GATAACCGATCAATTGATCGATACTG
1 AATAA-C--T-GATTG-T---TACTG
* * *
4638588 AATAACTGGTTATTATTG
1 AATAACTGATTGTTACTG
* *
4638606 AATAATTGATTGTTACCG
1 AATAACTGATTGTTACTG
*
4638624 AATAACTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
4638642 AATAAATAATTGTT-CTG
1 AATAACTGATTGTTACTG
4638659 A
1 A
4638660 GTGTTAATGA
Statistics
Matches: 201, Mismatches: 49, Indels: 21
0.74 0.18 0.08
Matches are distributed among these distances:
17 18 0.09
18 149 0.74
19 15 0.07
21 2 0.01
22 5 0.02
23 2 0.01
25 1 0.00
26 9 0.04
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
AATAACTGATTGTTACTG
Found at i:4639850 original size:13 final size:12
Alignment explanation
Indices: 4639832--4639870 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
4639822 TTTCTTCCAA
4639832 TTTTATAACTTTT
1 TTTTATAA-TTTT
4639845 TTTTATAAATTTT
1 TTTTAT-AATTTT
*
4639858 GTTTATAATTTT
1 TTTTATAATTTT
4639870 T
1 T
4639871 ATGATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 6 0.26
13 15 0.65
14 2 0.09
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (12 bp):
TTTTATAATTTT
Found at i:4640570 original size:30 final size:31
Alignment explanation
Indices: 4640536--4640598 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
4640526 TAAATTTGAA
*
4640536 AATATGAAGATATT-TAAATATTAATA-TATT
1 AATATCAA-ATATTATAAATATTAATATTATT
* *
4640566 AATATCAAATATTATAATTTTTAATATTATT
1 AATATCAAATATTATAAATATTAATATTATT
4640597 AA
1 AA
4640599 ACATATATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.18
30 17 0.61
31 6 0.21
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (31 bp):
AATATCAAATATTATAAATATTAATATTATT
Found at i:4650624 original size:12 final size:13
Alignment explanation
Indices: 4650607--4650643 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
4650597 GAACCGGACA
4650607 CGAACCGAA-CTC
1 CGAACCGAAGCTC
4650619 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
4650631 CGAACCGTAGCTC
1 CGAACCGAAGCTC
4650644 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:4652319 original size:14 final size:14
Alignment explanation
Indices: 4652300--4652331 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
4652290 ATTATCATGG
4652300 AAGGATTTTCACAT
1 AAGGATTTTCACAT
4652314 AAGGATTTTCACAT
1 AAGGATTTTCACAT
4652328 AAGG
1 AAGG
4652332 CAAGGAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (14 bp):
AAGGATTTTCACAT
Found at i:4661143 original size:24 final size:24
Alignment explanation
Indices: 4661116--4661164 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
4661106 CGGAAGAGGA
4661116 GAGTTTTCGAT-GATATTGGCTGAG
1 GAGTTTTC-ATAGATATTGGCTGAG
* *
4661140 GAGTTTTCATAGTTTTTGGCTGAG
1 GAGTTTTCATAGATATTGGCTGAG
4661164 G
1 G
4661165 GATTTTGCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.18, C:0.08, G:0.33, T:0.41
Consensus pattern (24 bp):
GAGTTTTCATAGATATTGGCTGAG
Found at i:4667383 original size:17 final size:18
Alignment explanation
Indices: 4667349--4667384 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
4667339 TCATTGAAGT
4667349 TAATTTTATAAGTTTTAA
1 TAATTTTATAAGTTTTAA
*
4667367 TAATTTT-TAATTTTTAA
1 TAATTTTATAAGTTTTAA
4667384 T
1 T
4667385 TTTTATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TAATTTTATAAGTTTTAA
Found at i:4669078 original size:33 final size:35
Alignment explanation
Indices: 4668998--4669080 Score: 98
Period size: 33 Copynumber: 2.4 Consensus size: 35
4668988 AGCAGAGCTC
4668998 CTACTTATGCTTCTCCTAGAAGATCTTACAGGACTT
1 CTACTTATGCTTCTCC-AGAAGATCTTACAGGACTT
** * *
4669034 CCGCTAATGCTTCTCC-G-AGATCTTGCAGGACTT
1 CTACTTATGCTTCTCCAGAAGATCTTACAGGACTT
*
4669067 CTACTTGTGCTTCT
1 CTACTTATGCTTCT
4669081 TTTTGAAAGT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
33 25 0.64
34 1 0.03
36 13 0.33
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (35 bp):
CTACTTATGCTTCTCCAGAAGATCTTACAGGACTT
Found at i:4673070 original size:84 final size:84
Alignment explanation
Indices: 4672926--4673095 Score: 243
Period size: 84 Copynumber: 2.0 Consensus size: 84
4672916 AAAGCATGTG
* * * *
4672926 CATAACACAAATACTACAACGTTTAAAACATTTCCATGAAATGATTGAATTTTAATATATTAAAA
1 CATAACACAAATACGACAACGTTCAAAACATTTCCATGAAATAATTGAATTTTAAAATATTAAAA
*
4672991 GAAAGGAGAATCCTGTACC
66 GAAAGGAGAATCCTGCACC
* * *
4673010 CATAACACAAATAGGAC-ACTGTTCAAATCATTTCCATGAAATAATTGGATTTTAAAATATTAAA
1 CATAACACAAATACGACAAC-GTTCAAAACATTTCCATGAAATAATTGAATTTTAAAATATTAAA
*
4673074 AGAAAGGAGAATCTTGCACC
65 AGAAAGGAGAATCCTGCACC
4673094 CA
1 CA
4673096 CTCTTCATTA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
83 2 0.03
84 74 0.97
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.28
Consensus pattern (84 bp):
CATAACACAAATACGACAACGTTCAAAACATTTCCATGAAATAATTGAATTTTAAAATATTAAAA
GAAAGGAGAATCCTGCACC
Found at i:4679267 original size:36 final size:35
Alignment explanation
Indices: 4679220--4679331 Score: 102
Period size: 36 Copynumber: 3.2 Consensus size: 35
4679210 CTCCTACTTA
4679220 TGCTTCTCCTAGAAGATCTTACAGGACTTCTGCTAG
1 TGCTTCTCCTA-AAGATCTTACAGGACTTCTGCTAG
* ** * *
4679256 TGCTTCTCCT--AGACCTTATGGGGCTTCTGCTAA
1 TGCTTCTCCTAAAGATCTTACAGGACTTCTGCTAG
* * * * *
4679289 TGCTTCTCCGAAAAGATCTTGCAGGACTTTTACTTG
1 TGCTTCTCC-TAAAGATCTTACAGGACTTCTGCTAG
4679325 TGCTTCT
1 TGCTTCT
4679332 TTTTGAAAGT
Statistics
Matches: 58, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
33 27 0.47
36 31 0.53
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.37
Consensus pattern (35 bp):
TGCTTCTCCTAAAGATCTTACAGGACTTCTGCTAG
Found at i:4693578 original size:37 final size:37
Alignment explanation
Indices: 4693507--4693578 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
4693497 ATATATATAT
* *
4693507 ATATAAAATATTTACAATAATGATGTAAATAAACAAC
1 ATATAAAATATTTACAATAATCATATAAATAAACAAC
4693544 ATATAAAATATTTGA-AATAA-CATATAAATGAAACA
1 ATATAAAATATTT-ACAATAATCATATAAAT-AAACA
4693579 TTTAAAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.23
37 23 0.74
38 1 0.03
ACGTcount: A:0.58, C:0.07, G:0.06, T:0.29
Consensus pattern (37 bp):
ATATAAAATATTTACAATAATCATATAAATAAACAAC
Found at i:4695032 original size:44 final size:43
Alignment explanation
Indices: 4694924--4695259 Score: 320
Period size: 44 Copynumber: 7.7 Consensus size: 43
4694914 CAAATACATG
* * *
4694924 AGACAAGATCTACTTTCTTCGATCTACTTTACCACCAATATGGGA
1 AGACAAGATCTGCTATCTTCGATCTAC-TT-CCACCAATATAGGA
*
4694969 AGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATATAGGA
* * * * * *
4695012 AGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGA
1 AGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATATAGGA
* * *
4695056 AGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGA
1 AGACAAGATCTGCTATCTTCGATCTACTT--CCACCAATATAGGA
* * *
4695101 AGACAAGATCTGC-ATCTTCGATCCATTTCCTACCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATATAGGA
* * * * * *
4695144 AGATAGGATCAGTTATCTTCGATCTACTT-CACGCTAATACATGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCCAC-C-AATATAGGA
* *
4695188 AGACAAGATCTGCTTTCTTCGATCTACTT-CGCCAATATAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCCACCAATATAGGA
* * *
4695230 AGATAGGATCAGCTATCTTCGATCTACTTC
1 AGACAAGATCTGCTATCTTCGATCTACTTC
4695260 TTGCCCCGGG
Statistics
Matches: 236, Mismatches: 45, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
42 38 0.16
43 46 0.19
44 116 0.49
45 35 0.15
46 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (43 bp):
AGACAAGATCTGCTATCTTCGATCTACTTCCACCAATATAGGA
Found at i:4695133 original size:132 final size:132
Alignment explanation
Indices: 4694897--4695259 Score: 536
Period size: 132 Copynumber: 2.8 Consensus size: 132
4694887 AGACTGTAAT
* * **
4694897 CTTCGATCTACTTCATGCAAATACATG-AGACAAGATCTACTTTCTTCGATCTACTTTACCACCA
1 CTTCGATCTACTTCACGCAAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCA
* *
4694961 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGATAGGATCAGCT
4695026 AC
131 AC
* *
4695028 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCAAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCA
* *
4695093 ATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCCTACCAATACAGGAAGATAGGATCAGTT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGATAGGATCAGCT
*
4695158 AT
131 AC
*
4695160 CTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG---CCA
1 CTTCGATCTACTTCACGCAAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCA
* * * * *
4695222 ATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTC
66 ATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC
4695260 TTGCCCCGGG
Statistics
Matches: 211, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
129 20 0.09
130 14 0.07
131 25 0.12
132 152 0.72
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (132 bp):
CTTCGATCTACTTCACGCAAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCA
ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGATAGGATCAGCT
AC
Found at i:4695394 original size:46 final size:46
Alignment explanation
Indices: 4695343--4696534 Score: 380
Period size: 46 Copynumber: 26.4 Consensus size: 46
4695333 ACCTACTTTG
* *
4695343 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * ** * *
4695389 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
*** * * ** * *
4695434 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* *
4695477 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * ** * *
4695523 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * *
4695568 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTCGATATGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* *
4695611 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * ** * *
4695657 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
*** * * ** * *
4695702 CTG--TTGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* *
4695745 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * ** * *
4695791 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * *
4695836 CTG--TAGT-CAGGGAGGTAAAATCTACCATACTTGATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCT-GC--A----ATCTTCAATCTATTCCA
* * * * * ** * *
4695886 CTGCCAGATGCAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
*** * * * * * *
4695931 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGTTTCG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* *
4695974 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * ** * *
4696020 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
*** * * * ** * *
4696065 CTG--TTGT-CAGGGAGGTAAAATTTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* *
4696108 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * ** * *
4696154 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * *
4696199 CTG--TAGT-CAGGGAGGTAAAATCTGCCATACTTGATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTG-C--A----ATCTTCAATCTATTCCA
* * * * * ** * *
4696249 CTGCCAGATGCAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
*** * * ** * *
4696294 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATC-TTCAATCT-ATTCCA
* *
4696338 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * ** * *
4696384 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
*** * * ** * *
4696429 CTG--TTGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* *
4696472 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
4696518 CTGCCAAATACAGGGAG
1 CTGCCAAATACAGGGAG
4696535 ATAGAGTTAT
Statistics
Matches: 781, Mismatches: 284, Indels: 162
0.64 0.23 0.13
Matches are distributed among these distances:
41 27 0.03
42 88 0.11
43 80 0.10
44 14 0.02
45 164 0.21
46 302 0.39
47 46 0.06
50 32 0.04
52 4 0.01
53 18 0.02
54 6 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (46 bp):
CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
Found at i:4695480 original size:134 final size:134
Alignment explanation
Indices: 4695267--4695872 Score: 1043
Period size: 134 Copynumber: 4.5 Consensus size: 134
4695257 TTCTTGCCCC
** * * * * * *
4695267 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTATAATCAGGGAGGTAAAATCCGCCGTCTTC
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTT
* * * *
4695332 AACCTACTTTGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
4695397 TACA
131 TACA
*
4695401 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTT
4695466 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
4695531 TACA
131 TACA
*
4695535 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTC
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTT
*
4695600 GATATGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
4695665 TACA
131 TACA
*
4695669 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTTGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTT
4695734 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
4695799 TACA
131 TACA
*
4695803 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATAC-T
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCAT-CTT
4695867 TGATCT
65 TGATCT
4695873 TCAATCTATT
Statistics
Matches: 450, Mismatches: 21, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
134 449 1.00
135 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (134 bp):
GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTT
GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
TACA
Found at i:4695940 original size:95 final size:94
Alignment explanation
Indices: 4695774--4696878 Score: 803
Period size: 95 Copynumber: 12.0 Consensus size: 94
4695764 AAGATCTGCA
4695774 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
4695839 TAGTCAGGGAGGTAAAATCTACCATACTTG
66 TAGTCAGGGAGGTAAAATCTGCCAT-CTTG
* *
4695869 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
4695934 TGGTCAGGGAGGTAAAATCTGCCATCTTCG
66 TAGTCAGGGAGGTAAAATCTGCCATCTT-G
* * * ** * * ** * *
4695964 A---TC--TGT-TT-CGCTGCCAAATACAGGAAGGCA-AGATCTGCAATCTTCAATCTATTCCAC
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCAC
* * * * *
4696021 TGCCAAATACAGGGAGATAGAGT-T---ATC--G
64 TG--TAGT-CAGGGAGGTAAAATCTGCCATCTTG
* * * *** * * * ** ** * * * *
4696049 -GCTTCAATGTACTCCACTG--TTGT-CAGGGAGGTAAAATT-TGCCATCTTTGATCTGCTTCGC
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTAT--CGGCTTCAATGTACTCCAC
* * * * *
4696109 TGCCAAATACAGGAAGGCAAGATCTG-CA-----
64 TG--TAGT-CAGGGAGGTAAAATCTGCCATCTTG
4696137 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
4696202 TAGTCAGGGAGGTAAAATCTGCCATACTTG
66 TAGTCAGGGAGGTAAAATCTGCCAT-CTTG
* *
4696232 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
4696297 TGGTCAGGGAGGTAAAATCTGCCATC-T-
66 TAGTCAGGGAGGTAAAATCTGCCATCTTG
* * * * ** * * ** * *
4696324 -T-TT-GATCTGCTT-CGCTGCCAAATACAGGAAGGCA-AGATCTGCAATCTTCAATCTATTCCA
1 ATCTTCAATCT-ATTCCACTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
* * * * *
4696384 CTGCCAAATACAGGGAGATAGAGT-T---ATC--G
63 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTG
* * * *** * * * ** ** ** * * * *
4696413 -GCTTCAATGTACTCCACTG--TTGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGGCTTCAATGTACTCCACT
* * * * *
4696474 GCCAAATACAGGAAGGCAAGATCTG-CA-----
65 G--TAGT-CAGGGAGGTAAAATCTGCCATCTTG
4696501 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
4696566 TGGTCAGGGAGGTAAAATCTGCCATCTTCG
66 TAGTCAGGGAGGTAAAATCTGCCATCTT-G
*
4696596 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
4696661 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATC-TTG
* *
4696691 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
4696756 TAGTCAGGGAGGTAAAATCTGCCATACTTG
66 TAGTCAGGGAGGTAAAATCTGCCAT-CTTG
* *
4696786 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
4696851 TGGTCAGGGAGGTAAAATCTGCCATCTT
66 TAGTCAGGGAGGTAAAATCTGCCATCTT
4696879 TTGATCTGCT
Statistics
Matches: 806, Mismatches: 146, Indels: 117
0.75 0.14 0.11
Matches are distributed among these distances:
85 1 0.00
87 6 0.01
88 127 0.16
89 93 0.12
90 27 0.03
91 45 0.06
92 38 0.05
93 13 0.02
94 7 0.01
95 446 0.55
96 3 0.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (94 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTG
Found at i:4696041 original size:134 final size:133
Alignment explanation
Indices: 4695869--4696235 Score: 653
Period size: 134 Copynumber: 2.7 Consensus size: 133
4695859 ACCATACTTG
* *
4695869 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
4695934 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGTTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTT-GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
4695999 TGCA
130 TGCA
4696003 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
4696068 TTGTCAGGGAGGTAAAATTTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATC-TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
4696133 TGCA
130 TGCA
4696137 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
4696202 TAGTCAGGGAGGTAAAATCTGCCATACTTGATCT
66 TAGTCAGGGAGGTAAAATCTGCCAT-CTTGATCT
4696236 TCAATCTATT
Statistics
Matches: 224, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
134 221 0.99
135 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (133 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
GCA
Found at i:4696101 original size:229 final size:229
Alignment explanation
Indices: 4695640--4696085 Score: 838
Period size: 229 Copynumber: 1.9 Consensus size: 229
4695630 AAGATCTGCA
4695640 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
4695705 TTGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
4695770 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
4695835 ACTGTAGTCAGGGAGGTAAAATCTACCATACTTG
196 ACTGTAGTCAGGGAGGTAAAATCTACCATACTTG
* *
4695869 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
4695934 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGTTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
4695999 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
*
4696064 ACTGTTGTCAGGGAGGTAAAAT
196 ACTGTAGTCAGGGAGGTAAAAT
4696086 TTGCCATCTT
Statistics
Matches: 211, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
229 211 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (229 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
ACTGTAGTCAGGGAGGTAAAATCTACCATACTTG
Found at i:4696171 original size:363 final size:363
Alignment explanation
Indices: 4695506--4696694 Score: 2245
Period size: 363 Copynumber: 3.3 Consensus size: 363
4695496 AAGATCTGCA
*
4695506 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
4695571 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATATGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
4695636 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
4695701 ACTGTTGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAA
196 ACTGTTGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAA
4695766 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
261 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
*
4695831 CTCCACTGTAGTCAGGGAGGTAAAATCTACCATACTTG
326 CTCCACTGTAGTCAGGGAGGTAAAATCTGCCATACTTG
*
4695869 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
4695934 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGTTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
4695999 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
*
4696064 ACTGTTGTCAGGGAGGTAAAATTTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAA
196 ACTGTTGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAA
4696129 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
261 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
4696194 CTCCACTGTAGTCAGGGAGGTAAAATCTGCCATACTTG
326 CTCCACTGTAGTCAGGGAGGTAAAATCTGCCATACTTG
*
4696232 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
4696297 TGGTCAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGAT
66 TAGTCAGGGAGGTAAAATCTGCCATC-TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGAT
4696362 CTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTC
130 CTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTC
4696427 CACTGTTGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCA
195 CACTGTTGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCA
4696492 AGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGT
260 AGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGT
*
4696557 ACTCCACTGTGGTCAGGGAGGTAAAATCTGCCAT-CTTCG
325 ACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATACTT-G
4696596 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
4696661 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCT
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCT
4696695 TCAATCTATT
Statistics
Matches: 811, Mismatches: 13, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
363 458 0.56
364 353 0.44
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (363 bp):
ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
ACTGTTGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAA
GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
CTCCACTGTAGTCAGGGAGGTAAAATCTGCCATACTTG
Done.