Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 145 of 295
Found at i:45051540 original size:132 final size:132
Alignment explanation
Indices: 45051387--45051887 Score: 806
Period size: 132 Copynumber: 3.8 Consensus size: 132
45051377 CTGACAAGTG
* * *
45051387 TATCCCAACACTTAGGAAAGTGTCACCCCAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
* *
45051452 TTATTCAAGCGTTGTCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTAG
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
45051517 TC
131 TC
* ** * *
45051519 TATCCCAACACTTAGAAAAGTGTTGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAGCCAATTC
1 TATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
45051584 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
45051649 TC
131 TC
* ** *
45051651 TATCCCAACACTTAGGGAAGTGTCACCACAAAAGTGTTTTCTTAGGACTACACAGAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
* *
45051716 TTATTCAAGCGTTGCCTTAGGCATACATATCCTAACCCTTATACAAAGAATTGGCCAAAGCATAG
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
45051781 TC
131 TC
** *
45051783 TATCCCAACACTTAGGAAA-TGTCGTCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTC
1 TATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
* *
45051847 TTATTCAAGCGTTGCTTTAGGCATACATATACCAACCCTTA
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTA
45051888 GGAAAATGTC
Statistics
Matches: 340, Mismatches: 29, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
131 77 0.23
132 263 0.77
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (132 bp):
TATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
TC
Found at i:45051952 original size:91 final size:91
Alignment explanation
Indices: 45051787--45051978 Score: 278
Period size: 91 Copynumber: 2.1 Consensus size: 91
45051777 ATAGTCTATC
* **
45051787 CCAACACTTAGGAAATGTCGTCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
1 CCAACCCTTAGGAAATGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
*
45051852 CAAGCGTTGCTTTAGGCATACATATA
66 CAAGCGTTGCTTTAGACATACATATA
**
45051878 CCAACCCTTAGGAAAATGTCACCACAAAAGTGTCGTCTTAGGACTACAC-AAAGGCAACTCTTAT
1 CCAACCCTTAGG-AAATGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTAT
* * * *
45051942 TTAAGCGTTGCTTTAGACATGCATCTC
65 TCAAGCGTTGCTTTAGACATACATATA
45051969 CCAACCCTTA
1 CCAACCCTTA
45051979 TACAAAGAGT
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
91 56 0.62
92 34 0.38
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (91 bp):
CCAACCCTTAGGAAATGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
CAAGCGTTGCTTTAGACATACATATA
Found at i:45054009 original size:35 final size:35
Alignment explanation
Indices: 45053970--45054045 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 35
45053960 AATTTAATTT
45053970 ATATTTT-ATTATTTGATT-TAAATATAATTTGTAAA
1 ATATTTTGA-TATTTGATTATAAATATAATTT-TAAA
* *
45054005 ATATTTTGATATTTTATTATGAATATAATTTTAAA
1 ATATTTTGATATTTGATTATAAATATAATTTTAAA
45054040 ATATTT
1 ATATTT
45054046 AAATTTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
35 25 0.68
36 12 0.32
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (35 bp):
ATATTTTGATATTTGATTATAAATATAATTTTAAA
Found at i:45054267 original size:21 final size:21
Alignment explanation
Indices: 45054243--45054295 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
45054233 CATTATTTCT
* *
45054243 AATCTCACCGCTATAGTATCC
1 AATCTCACCGCTACAGTAACC
*
45054264 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
45054285 AATCTCACCGC
1 AATCTCACCGC
45054296 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:45054626 original size:70 final size:70
Alignment explanation
Indices: 45054445--45054695 Score: 335
Period size: 70 Copynumber: 3.6 Consensus size: 70
45054435 TAGCTGACGA
* * * * * * *
45054445 TTAAGGCTTGCAAGTTCAATATCGCAGCTTCCAAAATAGTTAGCGCAAG-CTTATGCTCTCAGCT
1 TTAAGGCTCGCAGGTTCAATACCGCAGCCTCCAAAATAGTTAGCGCGAGTC-TACGCTCCCAGCT
*
45054509 GGTATC
65 AGTATC
* *
45054515 TTAA-GCTTGCAGGTTCAATACCACAGCCTCCAAAATAGTTAGCGCGAGTCTACGCTCCCAGCTA
1 TTAAGGCTCGCAGGTTCAATACCGCAGCCTCCAAAATAGTTAGCGCGAGTCTACGCTCCCAGCTA
45054579 GTATC
66 GTATC
** *
45054584 TTAAGGCTCGCAGGTTCAATACCTTAGCCTCCAAAATAGTTAGCGCGAGTCTACGCTCCCAACTA
1 TTAAGGCTCGCAGGTTCAATACCGCAGCCTCCAAAATAGTTAGCGCGAGTCTACGCTCCCAGCTA
45054649 GTATC
66 GTATC
* * *
45054654 TTAATGCTCGCAGGTTCAATACCGTAGCCTCCAAAACAGTTA
1 TTAAGGCTCGCAGGTTCAATACCGCAGCCTCCAAAATAGTTA
45054696 TGTAACAGCC
Statistics
Matches: 164, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
69 59 0.36
70 105 0.64
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (70 bp):
TTAAGGCTCGCAGGTTCAATACCGCAGCCTCCAAAATAGTTAGCGCGAGTCTACGCTCCCAGCTA
GTATC
Found at i:45055080 original size:83 final size:83
Alignment explanation
Indices: 45054941--45055107 Score: 334
Period size: 83 Copynumber: 2.0 Consensus size: 83
45054931 TATGAGGTCC
45054941 TTATTATGTTATTAGACCATTGATATATTAAATGGACATTGTTGGACATCCATTATAAGTTTAAA
1 TTATTATGTTATTAGACCATTGATATATTAAATGGACATTGTTGGACATCCATTATAAGTTTAAA
45055006 TGTTTATTATATTAAGGT
66 TGTTTATTATATTAAGGT
45055024 TTATTATGTTATTAGACCATTGATATATTAAATGGACATTGTTGGACATCCATTATAAGTTTAAA
1 TTATTATGTTATTAGACCATTGATATATTAAATGGACATTGTTGGACATCCATTATAAGTTTAAA
45055089 TGTTTATTATATTAAGGT
66 TGTTTATTATATTAAGGT
45055107 T
1 T
45055108 AAAATGGTAA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (83 bp):
TTATTATGTTATTAGACCATTGATATATTAAATGGACATTGTTGGACATCCATTATAAGTTTAAA
TGTTTATTATATTAAGGT
Found at i:45055938 original size:44 final size:42
Alignment explanation
Indices: 45055868--45056015 Score: 129
Period size: 42 Copynumber: 3.5 Consensus size: 42
45055858 TATATGTTAA
* * * *
45055868 TGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATTG-ATT
1 TGATTTTGTGTAAGACCACGTCTGGGACATCGGCATCGTATT
*
45055909 TGAAATTTATGTGTAAGACCATGTCTGGGACATCGGCATCGTATT
1 TG--ATTT-TGTGTAAGACCACGTCTGGGACATCGGCATCGTATT
* ** *
45055954 TGATTTTGTGTAAGACTCTC-TCTGGGACAGAGGCATTGATATT
1 TGATTTTGTGTAAGAC-CACGTCTGGGACATCGGCATCG-TATT
***
45055997 TGATTCCATGTAAGACCAC
1 TGATTTTGTGTAAGACCAC
45056016 ATATAGGACG
Statistics
Matches: 87, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.02
42 27 0.31
43 26 0.30
44 27 0.31
45 5 0.06
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
TGATTTTGTGTAAGACCACGTCTGGGACATCGGCATCGTATT
Found at i:45057709 original size:70 final size:70
Alignment explanation
Indices: 45057601--45058655 Score: 614
Period size: 70 Copynumber: 15.1 Consensus size: 70
45057591 CCAAAATAGA
* * * **
45057601 AGTTAGCGCGAGCCTAAGCTCCCAGCTGATATCCTAAGGCTCATTGGTTTAATACCGTAGCCTCC
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
45057666 AAAAT
66 AAAAT
* * * * * * *
45057671 AATTAGCGCGAGCCTACGCTCCTAGTTGATATCTTAAGGCTCGTAGGTTCAATACTATAGCCTCC
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
*
45057736 AAAAC
66 AAAAT
* * * * * * * ** *
45057741 AGTTAACGCCG-GCTTACGCTCTCAGATGGTATCATAAGGCTTATAGGTTCAATACTGCAACCTC
1 AGTTAGCG-CGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTC
45057805 CAAAACT
65 CAAAA-T
* *** * * * * * ** *
45057812 GGTTAGCATAAG-CTTCTGATCCTAGCTGGTATCTTAAGGCTCGCAGGCTCAATACCACAGCCTC
1 AGTTAGCGCGAGCCTAC-GCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTC
*
45057876 CAAAAC
65 CAAAAT
* * * ** * * *
45057882 AGTTAGC-CCAGGCCTACGCTCCCAGAT-AGTATCCTAAAGCTCGCATGTTCAATACTACAACCT
1 AGTTAGCGCGA-GCCTACGCTCCCAGCTGA-TATCCTAAGGCTCATAGGTTCAATACCACAGCCT
* *
45057945 CTAAAAC
64 CCAAAAT
* * ** * * *
45057952 AGTTAGTGTGAGCCTATACTCCCAGCTGATATCCTAAGGCTCACAGGTTCAATACCGCAGTCTCC
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
45058017 AAAAT
66 AAAAT
** * * * ** * *
45058022 AGTTAGCATGAGCCTACGCTCTCAGCTGATATCTTAAGGCTCA-ATGGTTTAATACCGTAACCTT
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATA-GGTTCAATACCACAGCCTC
45058086 CAAAAT
65 CAAAAT
* * * ** * * * * * *
45058092 AGTTAACGTGAGCTTGTGCTCCAAG-TTAGTATCTTAGGGCTCACAGGTTCAATACCGCAGCCTC
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGA-TATCCTAAGGCTCATAGGTTCAATACCACAGCCTC
*
45058156 CAAAAC
65 CAAAAT
* * * * * * * * **
45058162 AGTTAGCGCGAACCTACTCTCCCAACTGGTATCCTGAGTCTCGTAGGTTCAATACCACA-ACTTT
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
45058226 AAAAT
66 AAAAT
* * * * * * *
45058231 AATTAGCGTGAGCCTACGCTCCCAGTTGATATCCTAAAGCTCGTAGGTTCAATACTACATCCTCC
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
45058296 AAAAT
66 AAAAT
* * * * * * * ** ** * **
45058301 AGTTAGCGCCAACTTACACTCTCATCTGGTATTTTAAGGCTCGCAGGTCCAATGTCACAGCCTCC
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
45058366 AAAAT
66 AAAAT
* * * * ** * *
45058371 AGTTAACGCGAGCCTACGTTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCGCAACCTCC
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
45058436 AAAAT
66 AAAAT
* *** * * * * ** * * ** ** *
45058441 TGTTAGTATGAGCTTACGCTCCCAACTGGTATCTTAAAACTTACAAATTCAATACCGTAG-CTTC
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
*
45058505 AAAAC
66 AAAAT
* * * * * ** * * * *
45058510 AGTTAGCGTGAGCCTACACTACCAGCTGGTATCCTAAAGCTCGCAGGTTCAATATCGCAACATCC
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
*
45058575 AAAAC
66 AAAAT
** * * * * * * *
45058580 AGTTAGTACGATCTTACGTTCCCAGCTAATATCTTAAGGCTCGTACGTTCAATACCACAGCCTCC
1 AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
45058645 AAAAT
66 AAAAT
*
45058650 AATTAG
1 AGTTAG
45058656 TGTCAACTTA
Statistics
Matches: 745, Mismatches: 225, Indels: 30
0.75 0.22 0.03
Matches are distributed among these distances:
69 109 0.15
70 581 0.78
71 55 0.07
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (70 bp):
AGTTAGCGCGAGCCTACGCTCCCAGCTGATATCCTAAGGCTCATAGGTTCAATACCACAGCCTCC
AAAAT
Found at i:45057864 original size:141 final size:141
Alignment explanation
Indices: 45057690--45058026 Score: 356
Period size: 141 Copynumber: 2.4 Consensus size: 141
45057680 GAGCCTACGC
* * * * *
45057690 TCCTAGTTGATATCTTAAGGCTCGTAGGTTCAATACTATAGCCTCCAAAACAGTTAACGCC-GGC
1 TCCTAGCTGATATCTTAAGGCTCGCAGGCTCAATACCACAGCCTCCAAAACAGTTAAC-CCAGGC
* * * * * * *
45057754 TTACGCTCTCAGATGGTATCATAAGGCTTATAGGTTCAATACTGCAACCTCCAAAACTGGTTAGC
65 CTACGCTCCCAGATAGTATCATAAAGCTCACAGGTTCAATACTACAACCTCCAAAACTGGTTAGC
45057819 ATAAGCTTCTGA
130 ATAAGCTTCTGA
* *
45057831 TCCTAGCTGGTATCTTAAGGCTCGCAGGCTCAATACCACAGCCTCCAAAACAGTTAGCCCAGGCC
1 TCCTAGCTGATATCTTAAGGCTCGCAGGCTCAATACCACAGCCTCCAAAACAGTTAACCCAGGCC
* * * * * **
45057896 TACGCTCCCAGATAGTATCCTAAAGCTCGCATGTTCAATACTACAACCTCTAAAAC-AGTTAGTG
66 TACGCTCCCAGATAGTATCATAAAGCTCACAGGTTCAATACTACAACCTCCAAAACTGGTTAGCA
* * *
45057960 TGAGCCTAT-A
131 TAAGCTTCTGA
* * * * * * *
45057970 CTCCCAGCTGATATCCTAAGGCTCACAGGTTCAATACCGCAGTCTCCAAAATAGTTA
1 -TCCTAGCTGATATCTTAAGGCTCGCAGGCTCAATACCACAGCCTCCAAAACAGTTA
45058027 GCATGAGCCT
Statistics
Matches: 162, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
139 1 0.01
140 61 0.38
141 100 0.62
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (141 bp):
TCCTAGCTGATATCTTAAGGCTCGCAGGCTCAATACCACAGCCTCCAAAACAGTTAACCCAGGCC
TACGCTCCCAGATAGTATCATAAAGCTCACAGGTTCAATACTACAACCTCCAAAACTGGTTAGCA
TAAGCTTCTGA
Found at i:45058371 original size:279 final size:277
Alignment explanation
Indices: 45057661--45058439 Score: 794
Period size: 279 Copynumber: 2.8 Consensus size: 277
45057651 AATACCGTAG
* * * *
45057661 CCTCCAAAATAATTAGCGCGAGCCTACGCTCCTAGTTGATATCTTAAGGCTCGTAGGTTCAATAC
1 CCTCTAAAATAATTAGCGTGAGCCTACGCTCCCAGTTGATATCCTAAGGCTCGTAGGTTCAATAC
* * * * * * * *
45057726 TATAGCCTCCAAAACAGTTAACGCCGGCTTACGCTCTCAGATGGTATCATAAGGCTTATAGGTTC
66 TACATCCTCCAAAATAGTTAGCGCCAGCTTACGCTCTCAGCTGGTATCTTAAGGCTCA-AGGTTC
* * * * * *
45057791 AATACTGCAACCTCCAAAACTGGTTAGCATAAGCTTCTGATCCTAGCTGGTATCTTAAGGCTCGC
130 AATA-T-CAACCTCCAAAA-TAGTTAACGTGAGCTTATGATCCAAGCTGGTATCTTAAGGCTCGC
* * *
45057856 AGGCTCAATACCACAGCCTCCAAAACAGTTAGCCCAGGCCTACGCTCCCAGATAGTATCCTAAAG
192 AGGTTCAATACCGCAGCCTCCAAAACAGTTAGCCCAGACCTACGCTCCCAGATAGTATCCTAAAG
* *
45057921 CTCGCATGTTCAATACTACAA
257 CTCGCAGGTTCAATACCACAA
* * * ** * **
45057942 CCTCTAAAACAGTTAGTGTGAGCCTATACTCCCAGCTGATATCCTAAGGCTCACAGGTTCAATAC
1 CCTCTAAAATAATTAGCGTGAGCCTACGCTCCCAGTTGATATCCTAAGGCTCGTAGGTTCAATAC
** *** * *
45058007 CGCAGT-CTCCAAAATAGTTAGCATGAGCCTACGCTCTCAGCTGATATCTTAAGGCTCAATGGTT
66 TACA-TCCTCCAAAATAGTTAGCGCCAGCTTACGCTCTCAGCTGGTATCTTAAGGCTCAA-GGTT
* * * * * * * * *
45058071 TAATACCGTAACCTTCAAAATAGTTAACGTGAGCTTGTGCTCCAAGTTAGTATCTTAGGGCTCAC
129 CAATATC--AACCTCCAAAATAGTTAACGTGAGCTTATGATCCAAGCTGGTATCTTAAGGCTCGC
* * * *
45058136 AGGTTCAATACCGCAGCCTCCAAAACAGTTAGCGC-GAACCTACTCTCCCA-ACTGGTATCCT-G
192 AGGTTCAATACCGCAGCCTCCAAAACAGTTAGCCCAG-ACCTACGCTCCCAGA-TAGTATCCTAA
*
45058198 AGTCTCGTAGGTTCAATACCACAA
255 AG-CTCGCAGGTTCAATACCACAA
* *
45058222 -CTTTAAAATAATTAGCGTGAGCCTACGCTCCCAGTTGATATCCTAAAGCTCGTAGGTTCAATAC
1 CCTCTAAAATAATTAGCGTGAGCCTACGCTCCCAGTTGATATCCTAAGGCTCGTAGGTTCAATAC
* * * * * *
45058286 TACATCCTCCAAAATAGTTAGCGCCAACTTACACTCTCATCTGGTATTTTAAGGCTCGCAGGTCC
66 TACATCCTCCAAAATAGTTAGCGCCAGCTTACGCTCTCAGCTGGTATCTTAAGGCTC-AAGGTTC
* * * * * *
45058351 AATGTCACAGCCTCCAAAATAGTTAACGCGAGCCTACGTTCCCAGCTGGTATCTTAAGGCTCGCA
130 AATATCA-A-CCTCCAAAATAGTTAACGTGAGCTTATGATCCAAGCTGGTATCTTAAGGCTCGCA
*
45058416 GGTTCAATACCGCAACCTCCAAAA
193 GGTTCAATACCGCAGCCTCCAAAA
45058440 TTGTTAGTAT
Statistics
Matches: 398, Mismatches: 89, Indels: 24
0.78 0.17 0.05
Matches are distributed among these distances:
277 1 0.00
278 2 0.01
279 177 0.44
280 105 0.26
281 113 0.28
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (277 bp):
CCTCTAAAATAATTAGCGTGAGCCTACGCTCCCAGTTGATATCCTAAGGCTCGTAGGTTCAATAC
TACATCCTCCAAAATAGTTAGCGCCAGCTTACGCTCTCAGCTGGTATCTTAAGGCTCAAGGTTCA
ATATCAACCTCCAAAATAGTTAACGTGAGCTTATGATCCAAGCTGGTATCTTAAGGCTCGCAGGT
TCAATACCGCAGCCTCCAAAACAGTTAGCCCAGACCTACGCTCCCAGATAGTATCCTAAAGCTCG
CAGGTTCAATACCACAA
Found at i:45058465 original size:279 final size:274
Alignment explanation
Indices: 45057666--45058563 Score: 787
Period size: 279 Copynumber: 3.2 Consensus size: 274
45057656 CGTAGCCTCC
* * * * * * * * * *
45057666 AAAATAATTAGCGCGAGCCTACGCTCCTAGTTGATATCTTAAGGCTCGTAGGTTCAATACTATAG
1 AAAACAATTAGCGTGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATACTACAT
* * * * * *
45057731 CCTCCAAAACAGTTAACGCCGGCTTACGCTCTCAGATGGTATCATAAGGCTTATAGGTTCAATAC
66 CCTCCAAAATAGTTAGCGCCAGCTTACGCTCTCAGCTGGTATCTTAAGGCTCA-AGGTTCAATA-
* * * * * * *
45057796 TGCAACCTCCAAAACTGGTTAGCATAAG-CTTCTGATCCTAGCTGGTATCTTAAGGCTCGCAGGC
129 T-CAACCTCCAAAA-TAGTTAACGTGAGCCTAC-GATCCAAGCTGGTATCTTAAGGCTCGCAGGT
* *
45057860 TCAATACCACAGCCTCCAAAACAGTTAGCCCAG-GCCTACGCTCCCAGA-TAGTATCCTAAAGCT
191 TCAATACCGCAGCCTCCAAAACAGTTAG--CAGAGCCTACGCTCCCA-ACTGGTATCCT-AAGCT
* * *
45057923 CGCATGTTCAATACTACAACCTCT
252 CGCAAGTTCAATACCACAA-CTTT
* * * * * **
45057947 AAAACAGTTAGTGTGAGCCTATACTCCCAGCTGATATCCTAAGGCTCACAGGTTCAATACCGCAG
1 AAAACAATTAGCGTGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATACTACA-
*** * * *
45058012 T-CTCCAAAATAGTTAGCATGAGCCTACGCTCTCAGCTGATATCTTAAGGCTCAATGGTTTAATA
65 TCCTCCAAAATAGTTAGCGCCAGCTTACGCTCTCAGCTGGTATCTTAAGGCTCAA-GGTTCAATA
* * * ** * * * * *
45058076 CCGTAACCTTCAAAATAGTTAACGTGAGCTTGTGCTCCAAGTTAGTATCTTAGGGCTCACAGGTT
129 TC--AACCTCCAAAATAGTTAACGTGAGCCTACGATCCAAGCTGGTATCTTAAGGCTCGCAGGTT
* * * * *
45058141 CAATACCGCAGCCTCCAAAACAGTTAGCGCGAACCTACTCTCCCAACTGGTATCCTGAGTCTCGT
192 CAATACCGCAGCCTCCAAAACAGTTAGC-AGAGCCTACGCTCCCAACTGGTATCCTAAG-CTCGC
*
45058206 AGGTTCAATACCACAACTTT
255 AAGTTCAATACCACAACTTT
* * * *
45058226 AAAATAATTAGCGTGAGCCTACGCTCCCAGTTGATATCCTAAAGCTCGTAGGTTCAATACTACAT
1 AAAACAATTAGCGTGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATACTACAT
* * * * * * *
45058291 CCTCCAAAATAGTTAGCGCCAACTTACACTCTCATCTGGTATTTTAAGGCTCGCAGGTCCAATGT
66 CCTCCAAAATAGTTAGCGCCAGCTTACGCTCTCAGCTGGTATCTTAAGGCTC-AAGGTTCAATAT
* * *
45058356 CACAGCCTCCAAAATAGTTAACGCGAGCCTACGTTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
130 CA-A-CCTCCAAAATAGTTAACGTGAGCCTACGATCCAAGCTGGTATCTTAAGGCTCGCAGGTTC
* ** * * * * **
45058421 AATACCGCAACCTCCAAAATTGTTAGTATGAGCTTACGCTCCCAACTGGTATCTTAAAACTTACA
193 AATACCGCAGCCTCCAAAACAGTTAGCA-GAGCCTACGCTCCCAACTGGTATCCT-AAGCTCGCA
* ** * *
45058486 AATTCAATACCGTAGCTTC
256 AGTTCAATACCACAACTTT
* * *
45058505 AAAACAGTTAGCGTGAGCCTACACTACCAGCTGGTATCCTAAAGCTCGCAGGTTCAATA
1 AAAACAATTAGCGTGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATA
45058564 TCGCAACATC
Statistics
Matches: 486, Mismatches: 116, Indels: 32
0.77 0.18 0.05
Matches are distributed among these distances:
277 1 0.00
278 3 0.01
279 272 0.56
280 100 0.21
281 110 0.23
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (274 bp):
AAAACAATTAGCGTGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATACTACAT
CCTCCAAAATAGTTAGCGCCAGCTTACGCTCTCAGCTGGTATCTTAAGGCTCAAGGTTCAATATC
AACCTCCAAAATAGTTAACGTGAGCCTACGATCCAAGCTGGTATCTTAAGGCTCGCAGGTTCAAT
ACCGCAGCCTCCAAAACAGTTAGCAGAGCCTACGCTCCCAACTGGTATCCTAAGCTCGCAAGTTC
AATACCACAACTTT
Found at i:45058615 original size:139 final size:139
Alignment explanation
Indices: 45058365--45058616 Score: 342
Period size: 139 Copynumber: 1.8 Consensus size: 139
45058355 TCACAGCCTC
* ** * * *
45058365 CAAAATAGTTAACGCGAGCCTACGTTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCGCA
1 CAAAACAGTTAACGCGAGCCTACACTACCAGCTGGTATCCTAAAGCTCGCAGGTTCAATACCGCA
* ** * **
45058430 ACCTCCAAAATTGTTAGTATGAGCTTACGCTCCCAACTGGTATCTTAAAACTTACAAATTCAATA
66 ACATCCAAAACAGTTAGTACGAGCTTACGCTCCCAACTAATATCTTAAAACTTACAAATTCAATA
45058495 CCGTAGCTT
131 CCGTAGCTT
* * *
45058504 CAAAACAGTTAGCGTGAGCCTACACTACCAGCTGGTATCCTAAAGCTCGCAGGTTCAATATCGCA
1 CAAAACAGTTAACGCGAGCCTACACTACCAGCTGGTATCCTAAAGCTCGCAGGTTCAATACCGCA
* * *
45058569 ACATCCAAAACAGTTAGTACGATCTTACGTTCCCAGCTAATATCTTAA
66 ACATCCAAAACAGTTAGTACGAGCTTACGCTCCCAACTAATATCTTAA
45058617 GGCTCGTACG
Statistics
Matches: 95, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
139 95 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (139 bp):
CAAAACAGTTAACGCGAGCCTACACTACCAGCTGGTATCCTAAAGCTCGCAGGTTCAATACCGCA
ACATCCAAAACAGTTAGTACGAGCTTACGCTCCCAACTAATATCTTAAAACTTACAAATTCAATA
CCGTAGCTT
Found at i:45058670 original size:279 final size:277
Alignment explanation
Indices: 45057673--45058671 Score: 756
Period size: 279 Copynumber: 3.6 Consensus size: 277
45057663 TCCAAAATAA
* * * * * * * *
45057673 TTAGCGCGAGCCTACGCTCCTAGTTGATATCTTAAGGCTCGTAGGTTCAATAC-TATAGCCTCCA
1 TTAGCGTGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATACGCAT---CTCCA
* * * * * * **
45057737 AAACAGTTAACGC-CG-GCTTACGCTCTCAGATGGTATCATAAGGCT-TATAGGTTCAATACTGC
63 AAATAGTT-A-GCACGAACTTACGCTCTCAGCTGATATCTTAAGGCTCGA-AGGTTCAATACCAC
* * * * * * * * * *
45057799 AACCTCCAAAACTGGTTAGCATAAGCTT-CTGATCCTAGCTGGTATCTTAAGGCTCGCAGGCTCA
125 AGCCTCCAAAA-TAGTTAACGTCAGCTTAC-GTTCCAAGCTAGTATCTTAAGGCTCACAGGTTCA
* * * * * * *
45057863 ATACCACAGCCTCCAAAACAGTTAGC-CCAGGCCTACGCTCCCAGA-TAGTATCCTAAAGCTCGC
188 ATACCGCAACCTCCAAAACAGTTAGCACGA-ACCTACGCTCCCA-ACTGGTATCCTAAAACTCAC
** * *
45057926 ATGTTCAATACTACAACCTCTAAAACAG
251 AAATTCAATACCACAACTTC-AAAACAG
* * * *
45057954 TTAGTGTGAGCCTATACTCCCAGCTGATATCCTAAGGCTCACAGGTTCAATACCGCAGTCTCCAA
1 TTAGCGTGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATA-CGCA-TCTCCAA
* * * * ** *
45058019 AATAGTTAGCATGAGCCTACGCTCTCAGCTGATATCTTAAGGCTC-AATGGTTTAATACCGTAAC
64 AATAGTTAGCACGAACTTACGCTCTCAGCTGATATCTTAAGGCTCGAA-GGTTCAATACCACAGC
* * ** * * *
45058083 CTTCAAAATAGTTAACGTGAGCTTGTGCTCCAAGTTAGTATCTTAGGGCTCACAGGTTCAATACC
128 CTCCAAAATAGTTAACGTCAGCTTACGTTCCAAGCTAGTATCTTAAGGCTCACAGGTTCAATACC
* * * * ** ** **
45058148 GCAGCCTCCAAAACAGTTAGCGCGAACCTACTCTCCCAACTGGTATCCTGAGTCTCGTAGGTTCA
193 GCAACCTCCAAAACAGTTAGCACGAACCTACGCTCCCAACTGGTATCCTAAAACTCACAAATTCA
* * *
45058213 ATACCACAACTTTAAAATAA
258 ATACCACAACTTCAAAACAG
* * * *
45058233 TTAGCGTGAGCCTACGCTCCCAGTTGATATCCTAAAGCTCGTAGGTTCAATACTACATCCTCCAA
1 TTAGCGTGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATAC-GCAT-CTCCAA
* * * * * * * * **
45058298 AATAGTTAGCGCCAACTTACACTCTCATCTGGTATTTTAAGGCTCGCAGGTCCAATGTCACAGCC
64 AATAGTTAGCACGAACTTACGCTCTCAGCTGATATCTTAAGGCTCGAAGGTTCAATACCACAGCC
* * * *
45058363 TCCAAAATAGTTAACG-CGAGCCTACGTTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACC
129 TCCAAAATAGTTAACGTC-AGCTTACGTTCCAAGCTAGTATCTTAAGGCTCACAGGTTCAATACC
** * * * * * *
45058427 GCAACCTCCAAAATTGTTAGTATGAGCTTACGCTCCCAACTGGTATCTTAAAACTTACAAATTCA
193 GCAACCTCCAAAACAGTTAGCACGAACCTACGCTCCCAACTGGTATCCTAAAACTCACAAATTCA
** *
45058492 ATACCGTAGCTTCAAAACAG
258 ATACCACAACTTCAAAACAG
* * *
45058512 TTAGCGTGAGCCTACACTACCAGCTGGTATCCTAAAGCTCGCAGGTTCAATATCGCAACATCCAA
1 TTAGCGTGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATA-CGCATC-TCCAA
* * * * * * * *
45058577 AACAGTTAGTACGATCTTACGTTCCCAGCTAATATCTTAAGGCTCGTACGTTCAATACCACAGCC
64 AATAGTTAGCACGAACTTACGCTCTCAGCTGATATCTTAAGGCTCGAAGGTTCAATACCACAGCC
* ** *
45058642 TCCAAAATAATTAGTGTCAACTTACGTTCC
129 TCCAAAATAGTTAACGTCAGCTTACGTTCC
45058672 TATCCGATAT
Statistics
Matches: 565, Mismatches: 136, Indels: 36
0.77 0.18 0.05
Matches are distributed among these distances:
278 3 0.01
279 345 0.61
280 110 0.19
281 104 0.18
282 1 0.00
283 1 0.00
284 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (277 bp):
TTAGCGTGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATACGCATCTCCAAAA
TAGTTAGCACGAACTTACGCTCTCAGCTGATATCTTAAGGCTCGAAGGTTCAATACCACAGCCTC
CAAAATAGTTAACGTCAGCTTACGTTCCAAGCTAGTATCTTAAGGCTCACAGGTTCAATACCGCA
ACCTCCAAAACAGTTAGCACGAACCTACGCTCCCAACTGGTATCCTAAAACTCACAAATTCAATA
CCACAACTTCAAAACAG
Found at i:45064636 original size:19 final size:19
Alignment explanation
Indices: 45064578--45064638 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
45064568 ATAGGACAAC
* *
45064578 AAAATTATTAAAAA-CAGT
1 AAAATTATTAAAAATAATT
* **
45064596 AAATATTATTTAAAATGTTT
1 AAA-ATTATTAAAAATAATT
45064616 AAAATTATTAAAAATAATT
1 AAAATTATTAAAAATAATT
45064635 AAAA
1 AAAA
45064639 ATTTGTAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
18 3 0.09
19 27 0.79
20 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (19 bp):
AAAATTATTAAAAATAATT
Found at i:45065372 original size:28 final size:28
Alignment explanation
Indices: 45065331--45065390 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
45065321 GTCATTATCA
45065331 ACCCCATAAATTATAAAACTCTTCCTAT
1 ACCCCATAAATTATAAAACTCTTCCTAT
** * * *
45065359 ACCCCATATGTTATGAGACTTTTCCTAT
1 ACCCCATAAATTATAAAACTCTTCCTAT
45065387 ACCC
1 ACCC
45065391 ATTAATATGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (28 bp):
ACCCCATAAATTATAAAACTCTTCCTAT
Found at i:45066447 original size:12 final size:12
Alignment explanation
Indices: 45066425--45066461 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
45066415 GCAAATAATA
45066425 GTGTGCGTGGCC
1 GTGTGCGTGGCC
45066437 GTG-GTCGTGGCC
1 GTGTG-CGTGGCC
45066449 GTGTGCGTGGCC
1 GTGTGCGTGGCC
45066461 G
1 G
45066462 CAGACATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.04
12 21 0.91
13 1 0.04
ACGTcount: A:0.00, C:0.24, G:0.51, T:0.24
Consensus pattern (12 bp):
GTGTGCGTGGCC
Found at i:45070776 original size:28 final size:28
Alignment explanation
Indices: 45070736--45070798 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
45070726 GTCATTATCA
45070736 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
45070764 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
45070792 ACCCCAT
1 ACCCCAT
45070799 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:45073807 original size:15 final size:15
Alignment explanation
Indices: 45073787--45073818 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
45073777 GTAACAAATC
45073787 AGTTGGCATTATCAA
1 AGTTGGCATTATCAA
45073802 AGTTGGCATTATCAA
1 AGTTGGCATTATCAA
45073817 AG
1 AG
45073819 GATAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (15 bp):
AGTTGGCATTATCAA
Found at i:45075174 original size:22 final size:23
Alignment explanation
Indices: 45075125--45075175 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
45075115 TCATTTTATC
* *
45075125 TAATAAATAATTTAAATTAATTA
1 TAATAATTAATTTAAAATAATTA
*
45075148 T-ATAATTAA-TTAAAATATTTA
1 TAATAATTAATTTAAAATAATTA
45075169 TAATAAT
1 TAATAAT
45075176 ATATAAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 11 0.46
22 12 0.50
23 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TAATAATTAATTTAAAATAATTA
Found at i:45076981 original size:11 final size:11
Alignment explanation
Indices: 45076965--45076992 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
45076955 ATGAGATATT
45076965 TTATTATTTTA
1 TTATTATTTTA
45076976 TTATTATTTTA
1 TTATTATTTTA
45076987 TTATTA
1 TTATTA
45076993 ATTATTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:45079190 original size:46 final size:46
Alignment explanation
Indices: 45079138--45079553 Score: 575
Period size: 46 Copynumber: 8.9 Consensus size: 46
45079128 TGCTCTCTGC
45079138 TATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
1 TATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
*
45079184 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
1 TATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
* *
45079230 CATGAAATATGTAAGACCATGGTTGAAAGATACCATGACAACCTGA
1 TATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
* *
45079276 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGA
1 TATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
*
45079322 CATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAACCTGA
1 TATGAAATATGTAAGACCATGGTTGAAAGATACCATGG----C----AACCTGA
*
45079376 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
1 TATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
* *
45079422 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGA
1 TATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
* *
45079468 TATGAAATGA-ATAAGACCATGGTTGAAAGATACCATGGCAACATGA
1 TATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
* ** * * *
45079514 CAAAAAATGA-GTAAGACCATAGTTGAAAGACACTATGGCA
1 TATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCA
45079554 TCATGTCAAA
Statistics
Matches: 337, Mismatches: 24, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
46 293 0.87
50 2 0.01
54 42 0.12
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.23
Consensus pattern (46 bp):
TATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
Found at i:45079458 original size:192 final size:186
Alignment explanation
Indices: 45079139--45079553 Score: 638
Period size: 192 Copynumber: 2.2 Consensus size: 186
45079129 GCTCTCTGCT
45079139 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGG--CAACCTGATATGAAATGTGTAAGACC
1 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCACAACCTGATATGAAATGTGTAAGACC
45079202 ATGGTTGAAAGATACCATGGCAACCTGACATGAAATATGTAAGACCATGGTTGAAAGATACCATG
66 ATGGTTGAAAGATACCATGGCAACCTGACATGAAATATGTAAGACCATGGTTGAAAGATACCATG
** *
45079267 ACAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGAC
131 ACAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
45079323 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAACCTGATATGAAATGTGT
1 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGC-A-C----AACCTGATATGAAATGTGT
* *
45079388 AAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
60 AAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATATGTAAGACCATGGTTGAAAGAT
* *
45079453 ACCATGGCAACGTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
125 ACCATGACAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
45079515 AAAAAATGA-GTAAGACCATAGTTGAAAGACACTATGGCA
1 ATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCA
45079554 TCATGTCAAA
Statistics
Matches: 210, Mismatches: 12, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
184 37 0.18
188 1 0.00
191 1 0.00
192 170 0.81
193 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.23
Consensus pattern (186 bp):
ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCACAACCTGATATGAAATGTGTAAGACC
ATGGTTGAAAGATACCATGGCAACCTGACATGAAATATGTAAGACCATGGTTGAAAGATACCATG
ACAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:45080941 original size:15 final size:15
Alignment explanation
Indices: 45080917--45080962 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
45080907 ATTTAAATAG
*
45080917 AAATAAAAATATAAT
1 AAATAGAAATATAAT
45080932 AAATAGAAATATAAT
1 AAATAGAAATATAAT
45080947 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
45080963 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:45080982 original size:15 final size:14
Alignment explanation
Indices: 45080927--45081025 Score: 51
Period size: 15 Copynumber: 6.8 Consensus size: 14
45080917 AAATAAAAAT
45080927 ATAATAAATAGA-AA
1 ATAA-AAATAGATAA
* *
45080941 TATAATAATAGTAGAA
1 -ATAAAAATAG-ATAA
*
45080957 ATATAAATAGATAA
1 ATAAAAATAGATAA
45080971 ATAAAAATTAGATAA
1 ATAAAAA-TAGATAA
* *
45080986 ACAATAATAGTATTAGA
1 ATAAAAATAG-A-TA-A
*
45081003 ATAACAA-AG-TAA
1 ATAAAAATAGATAA
*
45081015 ATATAAATAGA
1 ATAAAAATAGA
45081026 AACATAATAA
Statistics
Matches: 65, Mismatches: 11, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
12 6 0.09
13 4 0.06
14 17 0.26
15 26 0.40
16 6 0.09
17 6 0.09
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (14 bp):
ATAAAAATAGATAA
Found at i:45081462 original size:36 final size:35
Alignment explanation
Indices: 45081390--45081463 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
45081380 GTAATTGAAA
*
45081390 GAAAAAAGAAAATAACTCAATTCCAATGGAAATAG
1 GAAAAAAGAAAATAACTCAATTCAAATGGAAATAG
* * *
45081425 GAAAAAAGAGAATAA-TCCAATTCTAAATTGAAGTAG
1 GAAAAAAGAAAATAACT-CAATTC-AAATGGAAATAG
45081461 GAA
1 GAA
45081464 TACAAAAATC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 1 0.03
35 20 0.61
36 12 0.36
ACGTcount: A:0.55, C:0.09, G:0.16, T:0.19
Consensus pattern (35 bp):
GAAAAAAGAAAATAACTCAATTCAAATGGAAATAG
Found at i:45108057 original size:15 final size:14
Alignment explanation
Indices: 45108024--45108053 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
45108014 TTAGTAATTG
45108024 AATTTAACTAAACA
1 AATTTAACTAAACA
45108038 AATTTAACTAAACA
1 AATTTAACTAAACA
45108052 AA
1 AA
45108054 ATTTGAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (14 bp):
AATTTAACTAAACA
Found at i:45114570 original size:15 final size:15
Alignment explanation
Indices: 45114530--45114570 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
45114520 CTCCTTTTAA
45114530 AAAAAT-TATAAAAT
1 AAAAATATATAAAAT
*
45114544 -ATAATATAATAAAAT
1 AAAAATAT-ATAAAAT
45114559 AAAAATATATAA
1 AAAAATATATAA
45114571 TAGTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
13 4 0.18
14 1 0.05
15 11 0.50
16 6 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAAATATATAAAAT
Found at i:45117490 original size:23 final size:22
Alignment explanation
Indices: 45117440--45117498 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
45117430 TGACAAAAGT
*
45117440 AAGTTTCAAATGCTATCCAAGC
1 AAGTTTTAAATGCTATCCAAGC
45117462 AAGTTTTAAATGTCT-TCCAAAGC
1 AAGTTTTAAATG-CTATCC-AAGC
*
45117485 ATGTTTT-AATGCTA
1 AAGTTTTAAATGCTA
45117499 ATATTGTAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 2 0.06
22 18 0.56
23 12 0.38
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.36
Consensus pattern (22 bp):
AAGTTTTAAATGCTATCCAAGC
Found at i:45118662 original size:3 final size:3
Alignment explanation
Indices: 45118656--45118690 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
45118646 ATAATGGTAT
*
45118656 TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
45118691 CAATGTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:45119390 original size:20 final size:20
Alignment explanation
Indices: 45119365--45119402 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45119355 TAACAAATTC
* *
45119365 GAAAAAATGAAGAAAATAAA
1 GAAAAAATAAAAAAAATAAA
45119385 GAAAAAATAAAAAAAATA
1 GAAAAAATAAAAAAAATA
45119403 CCCTTAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (20 bp):
GAAAAAATAAAAAAAATAAA
Found at i:45130218 original size:20 final size:20
Alignment explanation
Indices: 45130193--45130232 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
45130183 AAATTATATC
45130193 TTAATATAAAAATATAAAAA
1 TTAATATAAAAATATAAAAA
* *
45130213 TTAATATTACAATATAAAAA
1 TTAATATAAAAATATAAAAA
45130233 ATATATACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
TTAATATAAAAATATAAAAA
Found at i:45130382 original size:111 final size:117
Alignment explanation
Indices: 45130201--45130532 Score: 415
Period size: 111 Copynumber: 2.8 Consensus size: 117
45130191 TCTTAATATA
* * * * * * *
45130201 AAAATATAAAAATTAATATTACAATATAAAAAATATATACACTAGTCAAACCAATCTTAATATTA
1 AAAATATACAAATT-ATATTA-AATATAAAAAA-ACAAACACTA-CCAAAACTACCTTAATATTA
* *
45130266 ATTTTAACACAAATCTAATCATTCAAACAAAAATATAATGTTGAATGTTATATCTT
62 CTTTTAACACAAATCTAATAATTCAAACAAAAATATAATGTTGAATGTTATATCTT
* *
45130322 AAAATATACAAA-T-TA-T-AAT-TAAAAAAA-AAACACTACCAAAATTACCTTAATGTTACTTT
1 AAAATATACAAATTATATTAAATATAAAAAAACAAACACTACCAAAACTACCTTAATATTACTTT
* *
45130381 TAACACAAATATAATAAGTCAAACAAAAATATAATGTTGAATGTTATATCTT
66 TAACACAAATCTAATAATTCAAACAAAAATATAATGTTGAATGTTATATCTT
* *
45130433 AAAATATACAAATTAGTATTACAATATAAAAAAACATACACTACCAAAACTATCTTAATATTACT
1 AAAATATACAAATTA-TATTA-AATATAAAAAAACAAACACTACCAAAACTACCTTAATATTACT
* *
45130498 TTTAACACAATTCTAATAATTCAAACAAAATTATA
64 TTTAACACAAATCTAATAATTCAAACAAAAATATA
45130533 TAATATTACC
Statistics
Matches: 183, Mismatches: 20, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
111 78 0.43
112 8 0.04
113 1 0.01
114 9 0.05
115 4 0.02
117 4 0.02
118 10 0.05
119 57 0.31
120 1 0.01
121 11 0.06
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.32
Consensus pattern (117 bp):
AAAATATACAAATTATATTAAATATAAAAAAACAAACACTACCAAAACTACCTTAATATTACTTT
TAACACAAATCTAATAATTCAAACAAAAATATAATGTTGAATGTTATATCTT
Found at i:45131481 original size:56 final size:56
Alignment explanation
Indices: 45131412--45131523 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
45131402 TTCTCCCTCG
45131412 ATGATTATTCCAGGTATTCTCTTCAAATCCCAAACCAGTTTTCCTTCCATTTTCAA
1 ATGATTATTCCAGGTATTCTCTTCAAATCCCAAACCAGTTTTCCTTCCATTTTCAA
45131468 ATGATTATTCCAGGTATTCTCTTCAAATCCCAAACCAGTTTTCCTTCCATTTTCAA
1 ATGATTATTCCAGGTATTCTCTTCAAATCCCAAACCAGTTTTCCTTCCATTTTCAA
45131524 CCTTAAGCAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.39
Consensus pattern (56 bp):
ATGATTATTCCAGGTATTCTCTTCAAATCCCAAACCAGTTTTCCTTCCATTTTCAA
Found at i:45139307 original size:6 final size:6
Alignment explanation
Indices: 45139296--45139340 Score: 74
Period size: 6 Copynumber: 7.7 Consensus size: 6
45139286 CATAAAGATG
*
45139296 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA- GAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
45139341 GTTCCTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 4 0.11
6 32 0.89
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:45141401 original size:28 final size:28
Alignment explanation
Indices: 45141361--45141571 Score: 251
Period size: 28 Copynumber: 7.5 Consensus size: 28
45141351 ATTCTGCTAT
* * *
45141361 AAAGGCTTATTCTTTCTTAGTTCGCCAG
1 AAAGGCTTATTCTTTCGTAGTTCACCAC
**
45141389 AAAGGCTTATTCTTTCGTAGTTCGTCAC
1 AAAGGCTTATTCTTTCGTAGTTCACCAC
*
45141417 AAAGGCTTATTCTTTCATAGTTCACCAC
1 AAAGGCTTATTCTTTCGTAGTTCACCAC
**
45141445 AAAGGCTTATTCTTTCGTAGTTCGTCAC
1 AAAGGCTTATTCTTTCGTAGTTCACCAC
* * * *
45141473 AAAGGCTTATTCTTTCCTAGGTCTCCAT
1 AAAGGCTTATTCTTTCGTAGTTCACCAC
* * *
45141501 AAAGGCTTATTCTTTTGTTGTTCACCAT
1 AAAGGCTTATTCTTTCGTAGTTCACCAC
* * *
45141529 AAAGGATTATTCTTTCGTATTTCACCAG
1 AAAGGCTTATTCTTTCGTAGTTCACCAC
*
45141557 AAAAGCTTATTCTTT
1 AAAGGCTTATTCTTT
45141572 TCTGACATGT
Statistics
Matches: 157, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 157 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (28 bp):
AAAGGCTTATTCTTTCGTAGTTCACCAC
Found at i:45141505 original size:84 final size:84
Alignment explanation
Indices: 45141361--45141571 Score: 280
Period size: 84 Copynumber: 2.5 Consensus size: 84
45141351 ATTCTGCTAT
* * *
45141361 AAAGGCTTATTCTTTCTTAGTTCGCCAGAAAGGCTTATTCTTTCGTAGTTCGTCACAAAGGCTTA
1 AAAGGCTTATTCTTTCGTAGTTCGCCAGAAAGGCTTATTCTTTCCTAGGTCGTCACAAAGGCTTA
45141426 TTCTTTCATAGTTCACCAC
66 TTCTTTCATAGTTCACCAC
* * *
45141445 AAAGGCTTATTCTTTCGTAGTTCGTCACAAAGGCTTATTCTTTCCTAGGTC-TCCATAAAGGCTT
1 AAAGGCTTATTCTTTCGTAGTTCGCCAGAAAGGCTTATTCTTTCCTAGGTCGT-CACAAAGGCTT
** * *
45141509 ATTCTTTTGTTGTTCACCAT
65 ATTCTTTCATAGTTCACCAC
* * * *
45141529 AAAGGATTATTCTTTCGTATTTCACCAGAAAAGCTTATTCTTT
1 AAAGGCTTATTCTTTCGTAGTTCGCCAGAAAGGCTTATTCTTT
45141572 TCTGACATGT
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
83 1 0.01
84 109 0.99
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (84 bp):
AAAGGCTTATTCTTTCGTAGTTCGCCAGAAAGGCTTATTCTTTCCTAGGTCGTCACAAAGGCTTA
TTCTTTCATAGTTCACCAC
Found at i:45141572 original size:56 final size:56
Alignment explanation
Indices: 45141361--45141571 Score: 278
Period size: 56 Copynumber: 3.8 Consensus size: 56
45141351 ATTCTGCTAT
* *
45141361 AAAGGCTTATTCTTTCTTAGTTCGCCAGAAAGGCTTATTCTTTCGTAGTTCGTCAC
1 AAAGGCTTATTCTTTCATAGTTCACCAGAAAGGCTTATTCTTTCGTAGTTCGTCAC
*
45141417 AAAGGCTTATTCTTTCATAGTTCACCACAAAGGCTTATTCTTTCGTAGTTCGTCAC
1 AAAGGCTTATTCTTTCATAGTTCACCAGAAAGGCTTATTCTTTCGTAGTTCGTCAC
* * * * * * ** *
45141473 AAAGGCTTATTCTTTCCTAGGTCTCCATAAAGGCTTATTCTTTTGTTGTTCACCAT
1 AAAGGCTTATTCTTTCATAGTTCACCAGAAAGGCTTATTCTTTCGTAGTTCGTCAC
* * * *
45141529 AAAGGATTATTCTTTCGTATTTCACCAGAAAAGCTTATTCTTT
1 AAAGGCTTATTCTTTCATAGTTCACCAGAAAGGCTTATTCTTT
45141572 TCTGACATGT
Statistics
Matches: 136, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 136 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (56 bp):
AAAGGCTTATTCTTTCATAGTTCACCAGAAAGGCTTATTCTTTCGTAGTTCGTCAC
Found at i:45144257 original size:54 final size:54
Alignment explanation
Indices: 45144165--45144303 Score: 197
Period size: 54 Copynumber: 2.6 Consensus size: 54
45144155 ATGTTCCAAG
* * * * * * * *
45144165 TTAGTGAGTTACACGGCCTAACACATGACCTGGCACACGGGCGTGTGTGGCAAC
1 TTAGAGAGTTACATGGCCTAGCACACGGCCTAGCACACGGGCGTGTATGGCAAA
*
45144219 TTAGAGAGTTACATGGCCTAGCACACGGCCTAGTACACGGGCGTGTATGGCAAA
1 TTAGAGAGTTACATGGCCTAGCACACGGCCTAGCACACGGGCGTGTATGGCAAA
45144273 TTAGAGAGTTACATGGCCTAGCACACGGCCT
1 TTAGAGAGTTACATGGCCTAGCACACGGCCT
45144304 GACCACATGG
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (54 bp):
TTAGAGAGTTACATGGCCTAGCACACGGCCTAGCACACGGGCGTGTATGGCAAA
Found at i:45146279 original size:43 final size:43
Alignment explanation
Indices: 45146231--45146315 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
45146221 AAGTAAGTGC
*
45146231 ATCCTAGCCCTATTTTTAATGTTCTTTATATTTTTGAAATCCA
1 ATCCTAGCCCCATTTTTAATGTTCTTTATATTTTTGAAATCCA
*
45146274 ATCCTAGCCCCGTTTTTAATGTTCTTTATATTTTTGAAATCC
1 ATCCTAGCCCCATTTTTAATGTTCTTTATATTTTTGAAATCC
45146316 TCGTAGCTCG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.48
Consensus pattern (43 bp):
ATCCTAGCCCCATTTTTAATGTTCTTTATATTTTTGAAATCCA
Found at i:45147082 original size:48 final size:48
Alignment explanation
Indices: 45147008--45147470 Score: 626
Period size: 48 Copynumber: 9.6 Consensus size: 48
45146998 CCGTGCTAAA
* * * *
45147008 TGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATA
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
** *
45147056 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATATA
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* ** *
45147104 TTTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAGG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* * * *
45147152 TATGCCAGTGTAAGACCATGTTTGGGGCATGGCATCAGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
*
45147200 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* * * ** *
45147248 TGTGCCAATGTAAGACAATGTCTGGGGCATGGCATTGGCGATGATATA
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
*
45147296 TGTGCCAGTGTAAGACCATGTCTTGGACATGGCATCAGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
*
45147344 TGTGCCGGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* * *
45147392 TGTGCCAGTGCAAGACCATGTCTGGGACATGGCATCTGCGATGAGATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
*
45147440 TG-GATTCA-TGTAAGACCATGT-TAGGGACATG
1 TGTG--CCAGTGTAAGACCATGTCT-GGGACATG
45147471 ACATTGGTAC
Statistics
Matches: 372, Mismatches: 40, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
47 2 0.01
48 368 0.99
49 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
Found at i:45155630 original size:19 final size:20
Alignment explanation
Indices: 45155606--45155650 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
45155596 AAGAAATTCT
*
45155606 TTTTAT-TGTTTTAATATCA
1 TTTTATGTGTTATAATATCA
* *
45155625 TTTTATGTGTTATAGTATGA
1 TTTTATGTGTTATAATATCA
45155645 TTTTAT
1 TTTTAT
45155651 AAGTGCATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.24, C:0.02, G:0.11, T:0.62
Consensus pattern (20 bp):
TTTTATGTGTTATAATATCA
Found at i:45161206 original size:16 final size:17
Alignment explanation
Indices: 45161169--45161206 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
45161159 ACAGATAAAA
45161169 AGGCATACTACCCCTCT
1 AGGCATACTACCCCTCT
45161186 A-GCATACTACCCCT-T
1 AGGCATACTACCCCTCT
45161201 AGGCAT
1 AGGCAT
45161207 GAACTCATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 2 0.10
16 17 0.85
17 1 0.05
ACGTcount: A:0.26, C:0.37, G:0.13, T:0.24
Consensus pattern (17 bp):
AGGCATACTACCCCTCT
Found at i:45168159 original size:7 final size:7
Alignment explanation
Indices: 45168142--45168192 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
45168132 AGGACTAATT
45168142 GAGAG-A
1 GAGAGAA
45168148 GAGAGAA
1 GAGAGAA
45168155 GAGAGAA
1 GAGAGAA
*
45168162 GAGAAAA
1 GAGAGAA
*
45168169 GAAAGAA
1 GAGAGAA
*
45168176 GAGGAGAG
1 GA-GAGAA
*
45168184 GAGACAA
1 GAGAGAA
45168191 GA
1 GA
45168193 TATTCTGCCA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
6 5 0.14
7 26 0.72
8 5 0.14
ACGTcount: A:0.57, C:0.02, G:0.41, T:0.00
Consensus pattern (7 bp):
GAGAGAA
Found at i:45168499 original size:12 final size:12
Alignment explanation
Indices: 45168478--45168512 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
45168468 ACATGATTTC
*
45168478 CTCCTAAAATCT
1 CTCCTCAAATCT
45168490 CTCCTCAAATCT
1 CTCCTCAAATCT
*
45168502 CTCCACAAATC
1 CTCCTCAAATC
45168513 CCTTAGTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.40, G:0.00, T:0.29
Consensus pattern (12 bp):
CTCCTCAAATCT
Found at i:45175350 original size:10 final size:11
Alignment explanation
Indices: 45175323--45175355 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
45175313 AAAGCCAGAA
45175323 AAGAAAAAGAG
1 AAGAAAAAGAG
45175334 AAGAAAAAGAG
1 AAGAAAAAGAG
*
45175345 GA-AAAAAGAG
1 AAGAAAAAGAG
45175355 A
1 A
45175356 TAAAATGACG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 8 0.40
11 12 0.60
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (11 bp):
AAGAAAAAGAG
Found at i:45176852 original size:10 final size:11
Alignment explanation
Indices: 45176821--45176853 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
45176811 CAATTCAATC
45176821 AATTTAATTAAA
1 AATTT-ATTAAA
45176833 AATTTATTAAA
1 AATTTATTAAA
45176844 AATTT-TTAAA
1 AATTTATTAAA
45176854 GTTTAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 5 0.24
11 11 0.52
12 5 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
AATTTATTAAA
Found at i:45177758 original size:2 final size:2
Alignment explanation
Indices: 45177751--45177809 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
45177741 TTCAAGGAGG
45177751 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
45177793 TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC T
45177810 TTTCTTTTCT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:45179420 original size:124 final size:124
Alignment explanation
Indices: 45179200--45179443 Score: 384
Period size: 124 Copynumber: 2.0 Consensus size: 124
45179190 TAAATGCTTC
* *
45179200 AGTTGGTTTTGAAGTCTGGACTTAGCTTTTTCTCCCTGCCTTGCACAATTAGACAGATTGGTGAT
1 AGTTGGTTTCGAAGTCTGGACTTAGCTTTTTCTCCCTGCCTTGCACAACTAGACAGATTGGTGAT
* * *
45179265 TGTGGAGTTACTTTGGCAAAAATCTTTAGCATCCTCCTGGTGATATTTGATTAGCATCA
66 TGTGGAGTTACCTTAGCAAAAACCTTTAGCATCCTCCTGGTGATATTTGATTAGCATCA
* * *
45179324 AGTTGGTTTCGAAGTTTGTACTTAGCCTTTTT-TCCTTGCCTTGCACAACTAGACATG-TTGGTG
1 AGTTGGTTTCGAAGTCTGGACTTAG-CTTTTTCTCCCTGCCTTGCACAACTAGACA-GATTGGTG
45179387 ATTGTGGAGTTACCTTAGCAAAAACCTTTAGCATCCTCCTGGTGATATTTGATTAGC
64 ATTGTGGAGTTACCTTAGCAAAAACCTTTAGCATCCTCCTGGTGATATTTGATTAGC
45179444 TACAAGCAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
124 103 0.94
125 7 0.06
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (124 bp):
AGTTGGTTTCGAAGTCTGGACTTAGCTTTTTCTCCCTGCCTTGCACAACTAGACAGATTGGTGAT
TGTGGAGTTACCTTAGCAAAAACCTTTAGCATCCTCCTGGTGATATTTGATTAGCATCA
Found at i:45180641 original size:17 final size:18
Alignment explanation
Indices: 45180621--45180654 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45180611 ATTAAATAAT
*
45180621 TAATTTT-TTAATTTAAA
1 TAATTTTCTTAACTTAAA
45180638 TAATTTTCTTAACTTAA
1 TAATTTTCTTAACTTAA
45180655 TTCTAATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATTTTCTTAACTTAAA
Found at i:45192215 original size:44 final size:44
Alignment explanation
Indices: 45192165--45192250 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
45192155 TTGATATCTC
* *
45192165 AAAGTCCATGGTT-GTACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCAT-GTTCATAACATGGCAATTAAGGAAGAATTGACGGA
* *
45192209 AAAGTCCATGTTCATAACATGGCATTTAAGGAGGAATTGACG
1 AAAGTCCATGTTCATAACATGGCAATTAAGGAAGAATTGACG
45192251 ATTAAGGATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGTTCATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:45192448 original size:47 final size:47
Alignment explanation
Indices: 45192388--45192509 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
45192378 GCATTGGCAC
45192388 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
45192435 TAAGACAATGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
45192482 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
45192510 CCAAGTCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:45192670 original size:53 final size:54
Alignment explanation
Indices: 45192491--45192790 Score: 352
Period size: 55 Copynumber: 5.6 Consensus size: 54
45192481 GTAAGATAAG
* * * * *
45192491 GATATCATGTAAGACCATGCCAAGTCATGGCATTGATAAGTTCTATAAGACAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAA
* * *
45192545 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCAAA
* * * * *
45192600 GGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGAAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAA
**
45192653 GATACCATGTAAGACCATGTTAAGACATGGCATTGATGAGTTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCAAA
* * * * **
45192708 GGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCATG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAA
** *
45192761 GATACCACATAAGACCATGTCAAGACATGG
1 GATACCATGTAAGACCATGCCAAGACATGG
45192791 TAATGTTAAG
Statistics
Matches: 208, Mismatches: 35, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
53 77 0.37
54 41 0.20
55 90 0.43
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAA
Found at i:45192687 original size:108 final size:108
Alignment explanation
Indices: 45192496--45192790 Score: 466
Period size: 108 Copynumber: 2.7 Consensus size: 108
45192486 ATAAGGATAT
* * * * *
45192496 CATGTAAGACCATGCCAAGTCATGGCATTGATAAGTTCTATAA-GACAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGA-AAGGATACCATGTAAGAC
45192560 CATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
64 CATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
*
45192605 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAAAAGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAAAGGATACCATGTAAGACCA
*
45192670 TGTTAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* * **
45192713 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCATGGATACCACATAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAAAGGATACCATGTAAGACCA
45192778 TGTCAAGACATGG
66 TGTCAAGACATGG
45192791 TAATGTTAAG
Statistics
Matches: 172, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
108 135 0.78
109 37 0.22
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:45193851 original size:14 final size:14
Alignment explanation
Indices: 45193832--45193859 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45193822 GCAACAGGGG
45193832 AAACTTTAACTAAT
1 AAACTTTAACTAAT
45193846 AAACTTTAACTAAT
1 AAACTTTAACTAAT
45193860 TGACTAGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (14 bp):
AAACTTTAACTAAT
Found at i:45200434 original size:9 final size:9
Alignment explanation
Indices: 45200420--45200447 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
45200410 TAGCACACAG
45200420 AATTTGCAT
1 AATTTGCAT
45200429 AATTTGCAT
1 AATTTGCAT
45200438 AATTTGCAT
1 AATTTGCAT
45200447 A
1 A
45200448 TTACTACGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.43
Consensus pattern (9 bp):
AATTTGCAT
Found at i:45205547 original size:46 final size:46
Alignment explanation
Indices: 45205497--45205666 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
45205487 TTGAGCATCC
*
45205497 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCA
* * * * * *
45205543 GAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCA
* *
45205590 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCA
* *
45205636 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45205667 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.56
47 26 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCA
Found at i:45205650 original size:93 final size:93
Alignment explanation
Indices: 45205491--45205661 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
45205481 GGATGGTTGA
* *
45205491 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCAGAACTCGTTGAGT
45205556 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCTGAGTTCGTGAAATGTAACTAG
* *
45205584 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCAGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCAGAACTCGTTGAGT
45205649 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
45205662 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCAGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAAATGTAACTAG
Found at i:45208653 original size:15 final size:15
Alignment explanation
Indices: 45208630--45208674 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
45208620 GTATCGTATC
*
45208630 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
* *
45208645 TTGGATTTCTCTATC
1 TTGGATTTCTTTATT
45208660 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
45208675 CAGTTTCCTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.11, C:0.11, G:0.16, T:0.62
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:45214660 original size:46 final size:45
Alignment explanation
Indices: 45214610--45214785 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
45214600 TGGTTGAGCA
45214610 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
45214656 TCCGAACTCGTTGAGTTAAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
45214703 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
45214749 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45214786 GTGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:45214771 original size:93 final size:93
Alignment explanation
Indices: 45214607--45214777 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
45214597 GGATGGTTGA
* * *
45214607 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
45214672 TAAGTCCGAGTTCGAGAGATGTAACTAG
66 TAAGTCCGAGTTCGAGAGATGTAACTAG
* *
45214700 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
45214765 TGAGTCCGAGTTC
66 TAAGTCCGAGTTC
45214778 ACTTATGGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TAAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:45221251 original size:55 final size:55
Alignment explanation
Indices: 45221187--45221320 Score: 223
Period size: 55 Copynumber: 2.4 Consensus size: 55
45221177 GAGCCACAAG
*
45221187 ACACCCCTGTGTGCCTTGGCCGTGGTTCAATCTGACTTGAGCCACACGGCTAGCC
1 ACACACCTGTGTGCCTTGGCCGTGGTTCAATCTGACTTGAGCCACACGGCTAGCC
* *
45221242 ACACGCCTGTGTGCCTTGGCCGTGGTTGAATCTGACTTGAGCCACACGGCTAGCC
1 ACACACCTGTGTGCCTTGGCCGTGGTTCAATCTGACTTGAGCCACACGGCTAGCC
* *
45221297 ACACACCCGTGTGCCTTAGCCGTG
1 ACACACCTGTGTGCCTTGGCCGTG
45221321 CTCAAACTTG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 74 1.00
ACGTcount: A:0.16, C:0.34, G:0.27, T:0.23
Consensus pattern (55 bp):
ACACACCTGTGTGCCTTGGCCGTGGTTCAATCTGACTTGAGCCACACGGCTAGCC
Found at i:45230357 original size:21 final size:21
Alignment explanation
Indices: 45230333--45230377 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
45230323 AAAATCAGGC
45230333 ACACGCCTATGTGGAAGGGCA
1 ACACGCCTATGTGGAAGGGCA
* * *
45230354 ACACGCCTGTGTTGAAGGGTA
1 ACACGCCTATGTGGAAGGGCA
45230375 ACA
1 ACA
45230378 TGCCCGTGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.31, T:0.18
Consensus pattern (21 bp):
ACACGCCTATGTGGAAGGGCA
Found at i:45231581 original size:44 final size:45
Alignment explanation
Indices: 45231513--45231632 Score: 124
Period size: 46 Copynumber: 2.6 Consensus size: 45
45231503 TATCCGTGCT
45231513 GATGCCATGTCTC-AGACATGGTCTTACACTGAC-ACAT-CT-AGTAGCC
1 GATG-CATGTC-CAAGACAT-GTCTTACACTGACTACATCCTGAG--GCC
* *
45231559 GATGCATTTCCCAA-ACATGTCTTACACTGGCTTACATCCTGAGGCC
1 GATGCATGT-CCAAGACATGTCTTACACTGAC-TACATCCTGAGGCC
45231605 GATGCATGTCCAAGACATGTCTTACACT
1 GATGCATGTCCAAGACATGTCTTACACT
45231633 AGCACTCGTC
Statistics
Matches: 64, Mismatches: 3, Indels: 14
0.79 0.04 0.17
Matches are distributed among these distances:
44 12 0.19
45 13 0.20
46 35 0.55
47 2 0.03
48 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCAAGACATGTCTTACACTGACTACATCCTGAGGCC
Found at i:45238025 original size:43 final size:43
Alignment explanation
Indices: 45237967--45238133 Score: 221
Period size: 43 Copynumber: 3.9 Consensus size: 43
45237957 TATCGAAATG
45237967 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATA-TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* *
45238011 TGATATCGGGCTTCGGGCCTAGTAGGCTATAATGCCGGTGAGA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
45238054 TAATATCGAGCCTT-GGGCCTAGCAGGTTAAAATGCCGGTGAAA
1 TGATATCG-GGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
** *
45238097 TGATATCGGGCTTCAAGCCTAGCAGGCGA-AATGCCGG
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGG
45238134 GGAATGAGTT
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 12 0.11
43 86 0.80
44 9 0.08
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:45238218 original size:40 final size:41
Alignment explanation
Indices: 45237984--45238217 Score: 163
Period size: 43 Copynumber: 5.6 Consensus size: 41
45237974 CGGGCTTCGG
***
45237984 GCCTAGCAGGCTATAATGCCGGTGAAATG-ATATCGGGCTTCGG
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGCTTAAA
* * **
45238027 GCCTAGTAGGCTATAATGCCGGTGAGAT-AATATCGAGCCTT-GG
1 GCCTAGCAGGCTA-AATGCCGGTGA-ATGAAT-TCG-GGCTTAAA
* *
45238070 GCCTAGCAGGTTAAAATGCCGGTGAAATG-ATATCGGGCTTCAA
1 GCCTAGCAGGCT-AAATGCCGGTG-AATGAAT-TCGGGCTTAAA
* * * * *
45238113 GCCTAGCAGGCGAAATGCCGGGGAATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
* *** *
45238154 GTCTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
*
45238194 ACCTAGCAGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
45238218 TTTGATAAAA
Statistics
Matches: 153, Mismatches: 29, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
40 31 0.20
41 29 0.19
42 16 0.10
43 71 0.46
44 6 0.04
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
Found at i:45244272 original size:603 final size:603
Alignment explanation
Indices: 45243128--45244333 Score: 2241
Period size: 603 Copynumber: 2.0 Consensus size: 603
45243118 GCATGGTAAC
*
45243128 ACTTCTACACTCTCCGTTATCTATAGCTTTTTGTTGATAAATTCTAGTTAAGTTGTTGGTTTAAT
1 ACTTCTACACTCTCCGTTACCTATAGCTTTTTGTTGATAAATTCTAGTTAAGTTGTTGGTTTAAT
*
45243193 TTTGACCGAATGTGTGAGGGAAGGAACAAATTGAATTGTTATAATCGGAGTTGGGAAATATTAGT
66 TTTGACCGAATGTGTGAGGGAAGGAACAAATTGAATTGTTATAATCGGAGTTGGGAAATATTAAT
45243258 AAGCTTTCCTTGAATATTTTTCTTTATTCTTTAGTGTTTGATAATTTTTGGAATCTGTTAAATTG
131 AAGCTTTCCTTGAATATTTTTCTTTATTCTTTAGTGTTTGATAATTTTTGGAATCTGTTAAATTG
* * *
45243323 CTGTCTGAATTTTACCCCCATTTATAATATTAATTGCTACTCTTTTTATACTGTTCAGTGGAGGT
196 CTGTCTGAATTTTACCCCCATTAAAAATATTAACTGCTACTCTTTTTATACTGTTCAGTGGAGGT
* * *
45243388 ATAAATGCTGTTGAATATTGCAGTGATAAGGATGTTTAAAAAAAAGTGTATGTATGTATGTTTTA
261 ATAAACGCTGTTGAATATTGCAGTAATAAGGATGTTTAAAAAAAAGTCTATGTATGTATGTTTTA
* *
45243453 TGGATTTTCCATTTGGTGTGTTAACGTAGCAGTAAATTGTCATTTAAATGTTAATAAATGTGGTC
326 TGGATTTGCCATTTGGTGTGTTAAAGTAGCAGTAAATTGTCATTTAAATGTTAATAAATGTGGTC
45243518 TGAGTGACTTTAAATCATGTTAATAATGGTTGAAGTTGCAAATGAATAAATGGTGATGTATTTAT
391 TGAGTGACTTTAAATCATGTTAATAATGGTTGAAGTTGCAAATGAATAAATGGTGATGTATTTAT
45243583 TAAGTCTGAAATTTGAGATAAGGAGTGTTTGATGCTGCAGATGTATGACCGAATGCCAATTGATG
456 TAAGTCTGAAATTTGAGATAAGGAGTGTTTGATGCTGCAGATGTATGACCGAATGCCAATTGATG
45243648 TGTTAAAGGGGTTAATGCAATCATTATTGAAGTTATTAAATGAGAATAAAAGCAGAGTAAATGCT
521 TGTTAAAGGGGTTAATGCAATCATTATTGAAGTTATTAAATGAGAATAAAAGCAGAGTAAATGCT
45243713 ATAGGATTTATGTTTTAA
586 ATAGGATTTATGTTTTAA
** *
45243731 ACTTCTACACTCTCTTTTACCTATAGCTTTTTGTTGATAAATTCTGGTTAAGTTGTTGGTTTAAT
1 ACTTCTACACTCTCCGTTACCTATAGCTTTTTGTTGATAAATTCTAGTTAAGTTGTTGGTTTAAT
*
45243796 TTTGACCGAATGTGTGAGGGAAGGAACAAATTGAATTGTTGTAATCGGAGTTGGGAAATATTAAT
66 TTTGACCGAATGTGTGAGGGAAGGAACAAATTGAATTGTTATAATCGGAGTTGGGAAATATTAAT
45243861 AAGCTTTCCTTGAATATTTTTCTTTATTCTTTAGTGTTTGATAATTTTTGGAATCTGTTAAATTG
131 AAGCTTTCCTTGAATATTTTTCTTTATTCTTTAGTGTTTGATAATTTTTGGAATCTGTTAAATTG
* *
45243926 CTGTCTGAATTTTACCCCCATTAAAAATATTAACTGCTGCTCTTTTTATACTGTTCGGTGGAGGT
196 CTGTCTGAATTTTACCCCCATTAAAAATATTAACTGCTACTCTTTTTATACTGTTCAGTGGAGGT
*
45243991 GTAAACGCTGTTGAATATTGCAGTAATAAGGATGTTTAAAAAAAAGTCTATGTATGTATGTTTTA
261 ATAAACGCTGTTGAATATTGCAGTAATAAGGATGTTTAAAAAAAAGTCTATGTATGTATGTTTTA
*
45244056 TGGATTTGCCGTTTGGTGTGTTAAAGTAGCAGTAAATTGTCATTTAAATGTTAATAAATGTGGTC
326 TGGATTTGCCATTTGGTGTGTTAAAGTAGCAGTAAATTGTCATTTAAATGTTAATAAATGTGGTC
*
45244121 TGAGTGACTTTAAATCATGTTAATAATGGTTGAAGTTGCAAATGAATAATTGGTGATGTATTTAT
391 TGAGTGACTTTAAATCATGTTAATAATGGTTGAAGTTGCAAATGAATAAATGGTGATGTATTTAT
45244186 TAAGTCTGAAATTTGAGATAAGGAGTGTTTGATGCTGCAGATGTATGACCGAATGCCAATTGATG
456 TAAGTCTGAAATTTGAGATAAGGAGTGTTTGATGCTGCAGATGTATGACCGAATGCCAATTGATG
45244251 TGTTAAAGGGGTTAATGCAATCATTATTGAAGTTATTAAATGAGAATAAAAGCAGAGTAAATGCT
521 TGTTAAAGGGGTTAATGCAATCATTATTGAAGTTATTAAATGAGAATAAAAGCAGAGTAAATGCT
45244316 ATAGGATTTATGTTTTAA
586 ATAGGATTTATGTTTTAA
45244334 GTGTTAGTTA
Statistics
Matches: 584, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
603 584 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (603 bp):
ACTTCTACACTCTCCGTTACCTATAGCTTTTTGTTGATAAATTCTAGTTAAGTTGTTGGTTTAAT
TTTGACCGAATGTGTGAGGGAAGGAACAAATTGAATTGTTATAATCGGAGTTGGGAAATATTAAT
AAGCTTTCCTTGAATATTTTTCTTTATTCTTTAGTGTTTGATAATTTTTGGAATCTGTTAAATTG
CTGTCTGAATTTTACCCCCATTAAAAATATTAACTGCTACTCTTTTTATACTGTTCAGTGGAGGT
ATAAACGCTGTTGAATATTGCAGTAATAAGGATGTTTAAAAAAAAGTCTATGTATGTATGTTTTA
TGGATTTGCCATTTGGTGTGTTAAAGTAGCAGTAAATTGTCATTTAAATGTTAATAAATGTGGTC
TGAGTGACTTTAAATCATGTTAATAATGGTTGAAGTTGCAAATGAATAAATGGTGATGTATTTAT
TAAGTCTGAAATTTGAGATAAGGAGTGTTTGATGCTGCAGATGTATGACCGAATGCCAATTGATG
TGTTAAAGGGGTTAATGCAATCATTATTGAAGTTATTAAATGAGAATAAAAGCAGAGTAAATGCT
ATAGGATTTATGTTTTAA
Found at i:45245217 original size:43 final size:43
Alignment explanation
Indices: 45245155--45245325 Score: 236
Period size: 43 Copynumber: 4.0 Consensus size: 43
45245145 TATCGAAATG
*
45245155 TGATATTCGGGCTTTGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATA-TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* *
45245199 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCAGTGAGA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
45245242 TAATATCGAGCCTCGGGCCTAGCAGGTTATAATGCCGGTGAAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
** *
45245285 TGATATCGGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAA
45245326 TTAGTTCAGA
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 12 0.11
43 94 0.85
44 5 0.05
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:45245406 original size:40 final size:41
Alignment explanation
Indices: 45245172--45245405 Score: 161
Period size: 43 Copynumber: 5.6 Consensus size: 41
45245162 CGGGCTTTGG
***
45245172 GCCTAGCAGGCTATAATGCCGGTGAAATG-ATATCGGGCTTCGG
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGCTTAAA
* * * ***
45245215 GCCTAGCAGGCTATAATGCCAGTGAGAT-AATATCGAGCCTCGG
1 GCCTAGCAGGCTA-AATGCCGGTGA-ATGAAT-TCGGGCTTAAA
* *
45245258 GCCTAGCAGGTTATAATGCCGGTGAAATG-ATATCGGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGCTTAAA
* * * * *
45245301 GCCTAGCAGGCGAAATGCCGGTGAATTAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
* *** *
45245342 GTCTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
*
45245382 ACCTAGCAGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
45245406 TTTGATAAAA
Statistics
Matches: 154, Mismatches: 31, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
40 30 0.19
41 29 0.19
42 12 0.08
43 82 0.53
44 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAA
Found at i:45249257 original size:21 final size:21
Alignment explanation
Indices: 45249231--45249275 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
45249221 CTTTAAAACT
45249231 GCCCATGTGGAAGGGTAACAC
1 GCCCATGTGGAAGGGTAACAC
*
45249252 GCCCATGTTGAAGGGTAACAC
1 GCCCATGTGGAAGGGTAACAC
45249273 GCC
1 GCC
45249276 TGTGTCCCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.31, T:0.16
Consensus pattern (21 bp):
GCCCATGTGGAAGGGTAACAC
Found at i:45250556 original size:46 final size:44
Alignment explanation
Indices: 45250455--45250575 Score: 152
Period size: 46 Copynumber: 2.7 Consensus size: 44
45250445 ATGTCCGTGT
* *
45250455 CGATGCCATGTCCCAAACATTGTCTTACACTGACACATCTCGTAGC
1 CGATG-CATGTCCCAAACA-TGTCTTACACTGACACATCTCGAAGA
* * * *
45250501 CAATGCATGTCCCAAACACGTCTTACACTGGCTAACTTCTCGAAGA
1 CGATGCATGTCCCAAACATGTCTTACACTGAC--ACATCTCGAAGA
45250547 CGATGCATGTCCCAAACATGTCTTACACT
1 CGATGCATGTCCCAAACATGTCTTACACT
45250576 AGCATTCGTC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
44 12 0.18
45 13 0.20
46 40 0.62
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (44 bp):
CGATGCATGTCCCAAACATGTCTTACACTGACACATCTCGAAGA
Found at i:45250613 original size:47 final size:46
Alignment explanation
Indices: 45250552--45250674 Score: 144
Period size: 47 Copynumber: 2.6 Consensus size: 46
45250542 GAAGACGATG
* *
45250552 CATGTCCCAAACATGTCTTACACTAGCATTCGTC-TCA-AT-GTCAATAC
1 CATGTCCCAGACATGTCTTACACTAGC--TC-TCATAATATGGTCAAT-C
* *
45250599 CATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATATGGTCAATC
45250646 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
45250675 ACACAAATGA
Statistics
Matches: 68, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
45 2 0.03
46 19 0.28
47 29 0.43
48 18 0.26
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGGTCAATC
Found at i:45253202 original size:9 final size:9
Alignment explanation
Indices: 45253188--45253212 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
45253178 TATTATATTA
45253188 TATATTAAC
1 TATATTAAC
45253197 TATATTAAC
1 TATATTAAC
45253206 TATATTA
1 TATATTA
45253213 TATTTATGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (9 bp):
TATATTAAC
Found at i:45260980 original size:48 final size:48
Alignment explanation
Indices: 45260917--45261184 Score: 224
Period size: 48 Copynumber: 5.6 Consensus size: 48
45260907 CATCGATACC
* *
45260917 GATGCCATGTCCCAAACATGGTCTTACACTGACACATATAAAAATGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAACAATGCT
* * * * *** *
45260965 GATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATATTGAGGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAACAATGCT
* * *
45261013 CATGCCATGTCCCAAACATAGTCTTACACT-AGCTCTTATAACAATG-T
1 GATGCCATGTCCCAAACATGGTCTTACACTGA-CTCATATAACAATGCT
* * * *** *
45261060 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCAAATATTGA-GGT
1 -GATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAACAATGCT
* *
45261108 CAATGCCATGTCCCAGACATGGTCTTACACT-AGCTC-TCATAACAATGAC-
1 -GATGCCATGTCCCAAACATGGTCTTACACTGA-CTCAT-ATAACAATG-CT
* *
45261157 GATGTCATGTTCCAAACATGGTCTTACA
1 GATGCCATGTCCCAAACATGGTCTTACA
45261185 TTGGCTCACA
Statistics
Matches: 170, Mismatches: 42, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
47 2 0.01
48 167 0.98
49 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAACAATGCT
Found at i:45261053 original size:96 final size:96
Alignment explanation
Indices: 45260918--45261195 Score: 411
Period size: 96 Copynumber: 2.9 Consensus size: 96
45260908 ATCGATACCG
* * *
45260918 ATGCCATGTCCCAAACATGGTCTTACACT-GACACATATAAAAATGCTGATGCCATGTTCCAAAC
1 ATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTTATAACAATGCTGATGCCATGTTCCAAAC
45260982 ATGGTCTTACATTGGCTCACATATTGAGGCTC-
65 ATGGTCTTACATTGGCTCACATATTGAGG-TCA
*
45261014 ATGCCATGTCCCAAACATAGTCTTACACTAGCTCTTATAACAATG-TCGATGCCATGTTCCAAAC
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATAACAATGCT-GATGCCATGTTCCAAAC
* *
45261078 ATGGTCTTACACTGGCTCAAATATTGAGGTCA
65 ATGGTCTTACATTGGCTCACATATTGAGGTCA
* * *
45261110 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGAC-GATGTCATGTTCCAAAC
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATAACAATG-CTGATGCCATGTTCCAAAC
45261174 ATGGTCTTACATTGGCTCACAT
65 ATGGTCTTACATTGGCTCACAT
45261196 GTACCCTAAC
Statistics
Matches: 165, Mismatches: 12, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
95 3 0.02
96 161 0.98
97 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (96 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATAACAATGCTGATGCCATGTTCCAAACA
TGGTCTTACATTGGCTCACATATTGAGGTCA
Found at i:45268960 original size:26 final size:26
Alignment explanation
Indices: 45268912--45268963 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
45268902 ATTAGTATTT
45268912 AAATGTTAAATATATATGCTGTTATG
1 AAATGTTAAATATATATGCTGTTATG
* *
45268938 AAATGTTAGAATTTATAT-TTGTTATG
1 AAATGTTA-AATATATATGCTGTTATG
45268964 GCCGAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (26 bp):
AAATGTTAAATATATATGCTGTTATG
Found at i:45275934 original size:22 final size:21
Alignment explanation
Indices: 45275909--45275965 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
45275899 CACTAAGTCA
*
45275909 ACAGAACGACTCAATGCCGTAG
1 ACAGAACGACT-AACGCCGTAG
* *
45275931 ACAGAACAGCCTAACGCTGTAG
1 ACAGAAC-GACTAACGCCGTAG
*
45275953 ACAGAATGACTAA
1 ACAGAACGACTAA
45275966 AGGCCGTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 5 0.17
22 21 0.72
23 3 0.10
ACGTcount: A:0.40, C:0.25, G:0.21, T:0.14
Consensus pattern (21 bp):
ACAGAACGACTAACGCCGTAG
Found at i:45285568 original size:48 final size:47
Alignment explanation
Indices: 45285516--45285689 Score: 170
Period size: 48 Copynumber: 3.6 Consensus size: 47
45285506 CATTGAGTTT
* * *
45285516 GATGCCATGTGCTAGACATGGTGTTACACTAGCTATCATAACAATGTC
1 GATGCCATGT-CCAGACATGGTCTTACACTAGCTATCATAACAATGCC
* * * *** *
45285564 GATGCCATGCTTCAAACATGGTCTTACACTGGCTCA-CATATTGAGGCC
1 GATGCCATG-TCCAGACATGGTCTTACACTAGCT-ATCATAACAATGCC
* *
45285612 GATGCCATGTCCCAGACATGGTCTAACACTAGCTCTCATAACAATGCC
1 GATGCCATGT-CCAGACATGGTCTTACACTAGCTATCATAACAATGCC
* *
45285660 GATGCCATGTTCCAAACATGATCTTACACT
1 GATGCCATG-TCCAGACATGGTCTTACACT
45285690 GGCTCACATG
Statistics
Matches: 99, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
47 1 0.01
48 95 0.96
49 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCAGACATGGTCTTACACTAGCTATCATAACAATGCC
Found at i:45285631 original size:96 final size:96
Alignment explanation
Indices: 45285462--45285698 Score: 287
Period size: 96 Copynumber: 2.5 Consensus size: 96
45285452 AAAAGGGTAT
* * * * * * * * * *** *
45285462 AATGCCGATGTCATGTCCCAGACATGGTTTTATACTAGCTCTCACATTGAGTTTGATGCCATGTG
1 AATGCCGATGCCATGTTCCAAACATGATCTTACACTGGCTCACATATTGAGGCCGATGCCATGTC
* * *
45285527 CTAGACATGGTGTTACACTAGCTATCATAAC
66 CCAGACATGGTCTAACACTAGCTATCATAAC
* *
45285558 AATGTCGATGCCATGCTT-CAAACATGGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGT
1 AATGCCGATGCCATG-TTCCAAACATGATCTTACACTGGCTCACATATTGAGGCCGATGCCATGT
*
45285622 CCCAGACATGGTCTAACACTAGCTCTCATAAC
65 CCCAGACATGGTCTAACACTAGCTATCATAAC
45285654 AATGCCGATGCCATGTTCCAAACATGATCTTACACTGGCTCACAT
1 AATGCCGATGCCATGTTCCAAACATGATCTTACACTGGCTCACAT
45285699 GTACCTTAAT
Statistics
Matches: 120, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
95 2 0.02
96 117 0.98
97 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (96 bp):
AATGCCGATGCCATGTTCCAAACATGATCTTACACTGGCTCACATATTGAGGCCGATGCCATGTC
CCAGACATGGTCTAACACTAGCTATCATAAC
Found at i:45287689 original size:21 final size:21
Alignment explanation
Indices: 45287627--45287690 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
45287617 GGGAAGACAC
* *
45287627 GACCATGTGGCTGAAAGACAT
1 GACCATGTGGCTGAGACACAT
* * * * *
45287648 GCCCGTGTAGTTGAGGCACAT
1 GACCATGTGGCTGAGACACAT
*
45287669 GACCATGTGGCTGAGATACAT
1 GACCATGTGGCTGAGACACAT
45287690 G
1 G
45287691 CTTGTGTGCA
Statistics
Matches: 30, Mismatches: 13, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (21 bp):
GACCATGTGGCTGAGACACAT
Found at i:45294563 original size:17 final size:16
Alignment explanation
Indices: 45294541--45294574 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
45294531 AGGGATCGCA
45294541 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
45294558 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
45294574 T
1 T
45294575 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:45296876 original size:31 final size:31
Alignment explanation
Indices: 45296839--45296897 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
45296829 TCAGACTAAG
*
45296839 TTTTTAAATCTACTTAAGTAAGTCTACAAAT
1 TTTTTAAATCTACTTAAATAAGTCTACAAAT
45296870 TTTTTAAATCTACTTAAATAAGTCTACA
1 TTTTTAAATCTACTTAAATAAGTCTACA
45296898 TGGATGCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.42
Consensus pattern (31 bp):
TTTTTAAATCTACTTAAATAAGTCTACAAAT
Found at i:45299988 original size:21 final size:20
Alignment explanation
Indices: 45299964--45300002 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
45299954 CTGTGTTGAT
45299964 TTCGTACTTTGGCCCATTTTC
1 TTCGT-CTTTGGCCCATTTTC
*
45299985 TTCGTTTTTGGCCCATTT
1 TTCGTCTTTGGCCCATTT
45300003 CTCGTTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.08, C:0.26, G:0.15, T:0.51
Consensus pattern (20 bp):
TTCGTCTTTGGCCCATTTTC
Found at i:45301789 original size:19 final size:19
Alignment explanation
Indices: 45301765--45301816 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
45301755 AGAAATAACC
45301765 AAAATTAATAATTAAAAAT
1 AAAATTAATAATTAAAAAT
* *
45301784 AAAATTTATAAATT-ATAAT
1 AAAATTAAT-AATTAAAAAT
* *
45301803 AAAAATAAAAATTA
1 AAAATTAATAATTA
45301817 GTTTCAATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
18 4 0.15
19 18 0.69
20 4 0.15
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATTAATAATTAAAAAT
Found at i:45312293 original size:48 final size:48
Alignment explanation
Indices: 45312241--45312420 Score: 209
Period size: 48 Copynumber: 3.8 Consensus size: 48
45312231 TATGTGTGCC
*
45312241 AGTGTAAGACCACGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
* * * * * * * *
45312289 AGTGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTGTGAGAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
* * * * *
45312337 AGTGTAAGACCATGTCTGGGACATGGCATTGG-TATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCT
*
45312385 AGTGTAAAACCATGTCTGGGACATGGCATCGGCCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
45312421 ATTGTAATGC
Statistics
Matches: 107, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
47 1 0.01
48 105 0.98
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
Found at i:45312409 original size:96 final size:96
Alignment explanation
Indices: 45312239--45312417 Score: 261
Period size: 96 Copynumber: 1.9 Consensus size: 96
45312229 TATATGTGTG
*
45312239 CCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCACGATATGAGAGCTAGTGTAAGACCATGT
1 CCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCACGATATGAGAGCTAGTGTAAAACCATGT
*
45312304 TTGGAACATGGCATCGGCGATGTTGTGAGAA
66 CTGGAACATGGCATCGGCGATGTTGTGAGAA
* * * * * *
45312335 CCAGTGTAAGACCATGTCTGGGACATGGCATTGG-TATTGATATGTGCGCTAGTGTAAAACCATG
1 CCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCTAGTGTAAAACCATG
*
45312399 TCTGGGACATGGCATCGGC
65 TCTGGAACATGGCATCGGC
45312418 CACATTGTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
95 1 0.01
96 72 0.99
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (96 bp):
CCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCACGATATGAGAGCTAGTGTAAAACCATGT
CTGGAACATGGCATCGGCGATGTTGTGAGAA
Found at i:45314301 original size:27 final size:27
Alignment explanation
Indices: 45314261--45314400 Score: 178
Period size: 27 Copynumber: 5.2 Consensus size: 27
45314251 GGGAAGCGTC
* *
45314261 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
45314288 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGTT
45314315 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGTT
*
45314342 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGT-T
* **
45314370 CTGGTGACTCTATCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
45314396 CTGGT
1 CTGGT
45314401 AGCCATGCTG
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 9 0.09
27 78 0.75
28 17 0.16
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:45314415 original size:81 final size:81
Alignment explanation
Indices: 45314261--45314420 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 81
45314251 GGGAAGCGTC
* * * *
45314261 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCTGGTGGCTCT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTTCTGGTAGCTCT
45314326 GCCACATATTTCTGTT
66 GCCACATATTTCTGTT
* * *
45314342 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCTGTTCTGGTAGC-C
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTGTTCTGGTAGCTC
**
45314405 ATGCTGCATATTTCTG
65 -TGCCACATATTTCTG
45314421 AGGCGTGTAG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 1 0.01
81 50 0.74
82 17 0.25
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTTCTGGTAGCTCT
GCCACATATTTCTGTT
Found at i:45322166 original size:27 final size:27
Alignment explanation
Indices: 45322125--45322236 Score: 104
Period size: 27 Copynumber: 4.1 Consensus size: 27
45322115 AGGAAGCGTC
*
45322125 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
45322152 CTAGTGGCTCTGCCATATATT-TCT-ATT
1 CTGGTGGCTCTGCCACA-ATTATCTGA-T
* *
45322179 TTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
45322207 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
45322233 CTGG
1 CTGG
45322237 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
26 9 0.13
27 42 0.61
28 17 0.25
29 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:45330599 original size:46 final size:46
Alignment explanation
Indices: 45330506--45330657 Score: 160
Period size: 47 Copynumber: 3.2 Consensus size: 46
45330496 ATAGTAAAAC
* * * ** * *
45330506 TATGGTCTTGCACATAATCACATATTACACACTGAAGTTATAGCCCAGC
1 TATGGTCTTACACA-GATCACATA-T-CACACTGATGCCATATCCCAGA
45330555 TATGGTCTTACACAGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGATCACATATCACACTGATGCCATATCCCAGA
* * ** *
45330601 TATGGTCTTATATAGAAGAACATATCACACTGATGCCATATCTCAGA
1 TATGGTCTTACACAG-ATCACATATCACACTGATGCCATATCCCAGA
45330648 TATGGTCTTA
1 TATGGTCTTA
45330658 TACGAAAGCA
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 30 0.33
47 39 0.43
48 8 0.09
49 13 0.14
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (46 bp):
TATGGTCTTACACAGATCACATATCACACTGATGCCATATCCCAGA
Found at i:45330671 original size:47 final size:46
Alignment explanation
Indices: 45330549--45330677 Score: 168
Period size: 47 Copynumber: 2.7 Consensus size: 46
45330539 GAAGTTATAG
* * * *
45330549 CCCAGCTATGGTCTTACACAGATCACATATCACACTGATGCCATAT
1 CCCAGATATGGTCTTATACAAAGCACATATCACACTGATGCCATAT
* *
45330595 CCCAGATATGGTCTTATATAGAAGAACATATCACACTGATGCCATAT
1 CCCAGATATGGTCTTATACA-AAGCACATATCACACTGATGCCATAT
*
45330642 CTCAGATATGGTCTTATACGAAAGCACATAATCACA
1 CCCAGATATGGTCTTATAC-AAAGCACAT-ATCACA
45330678 TCTCTCTGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
46 17 0.24
47 47 0.66
48 7 0.10
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (46 bp):
CCCAGATATGGTCTTATACAAAGCACATATCACACTGATGCCATAT
Found at i:45330709 original size:53 final size:54
Alignment explanation
Indices: 45330577--45330771 Score: 176
Period size: 54 Copynumber: 3.8 Consensus size: 54
45330567 CAGATCACAT
* * * *
45330577 ATCACA-CTGATGCCATATCCCAGATATGGTCTTAT---ATAG-A-AGAA-CAT
1 ATCACATCTGATGCCATATCCCAGCTATGGTCTTATACGAAAGCACATAATCAC
* *
45330624 ATCACA-CTGATGCCATATCTCAGATATGGTCTTATACGAAAGCACATAATCAC
1 ATCACATCTGATGCCATATCCCAGCTATGGTCTTATACGAAAGCACATAATCAC
* * * * * * *
45330677 ATCTC-TCTGATGCCATAGCCCAGCTATTGTCTTATATGGATATCACATGATCAC
1 ATCACATCTGATGCCATATCCCAGCTATGGTCTTATA-CGAAAGCACATAATCAC
* *
45330731 ATCACATC-GATTCCATATCCCGGCTATGGTCTTATACGAAA
1 ATCACATCTGATGCCATATCCCAGCTATGGTCTTATACGAAA
45330772 ATTACATATC
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
47 34 0.29
50 3 0.03
51 1 0.01
52 3 0.03
53 35 0.29
54 41 0.34
55 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (54 bp):
ATCACATCTGATGCCATATCCCAGCTATGGTCTTATACGAAAGCACATAATCAC
Found at i:45336154 original size:25 final size:24
Alignment explanation
Indices: 45336107--45336154 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
45336097 CACTTTTATC
45336107 TTTATTTATCTTCTTTAAGTACTT
1 TTTATTTATCTTCTTTAAGTACTT
*
45336131 TTTATTTTATTTTCATTTAA-TACT
1 TTTA-TTTATCTTC-TTTAAGTACT
45336155 ATTTCACTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 12 0.57
26 5 0.24
ACGTcount: A:0.23, C:0.10, G:0.02, T:0.65
Consensus pattern (24 bp):
TTTATTTATCTTCTTTAAGTACTT
Found at i:45343924 original size:21 final size:21
Alignment explanation
Indices: 45343900--45343939 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
45343890 CTGTGCTCAG
* *
45343900 AGGTTCGACATTATTGATGCA
1 AGGTTCGACAGTATCGATGCA
*
45343921 AGGTTTGACAGTATCGATG
1 AGGTTCGACAGTATCGATG
45343940 AGACTTTACG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (21 bp):
AGGTTCGACAGTATCGATGCA
Found at i:45344051 original size:6 final size:6
Alignment explanation
Indices: 45344028--45344083 Score: 62
Period size: 6 Copynumber: 9.3 Consensus size: 6
45344018 TTTGAGTCTA
**
45344028 TTTA-T TTTATT TCCATT TTTATT TTTATT TTT-TT ATTTCATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT -TTT-ATT TTTATT
45344076 TTTATT TT
1 TTTATT TT
45344084 CCTTCATTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
5 6 0.14
6 32 0.74
7 3 0.07
8 2 0.05
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:45344069 original size:25 final size:26
Alignment explanation
Indices: 45344026--45344083 Score: 100
Period size: 25 Copynumber: 2.2 Consensus size: 26
45344016 CCTTTGAGTC
45344026 TATTTATTTTATTTCCATTTTTATTTT
1 TATTT-TTTTATTTCCATTTTTATTTT
45344053 TATTTTTTTATTT-CATTTTTATTTT
1 TATTTTTTTATTTCCATTTTTATTTT
45344078 TATTTT
1 TATTTT
45344084 CCTTCATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 18 0.58
26 8 0.26
27 5 0.16
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (26 bp):
TATTTTTTTATTTCCATTTTTATTTT
Found at i:45344094 original size:31 final size:31
Alignment explanation
Indices: 45344027--45344096 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
45344017 CTTTGAGTCT
* * *
45344027 ATTTATTTTATTTCCATTTTTATTTTTATTT
1 ATTTATTTCATTTCCATTTTTATTTTCATTC
* ** *
45344058 TTTTATTTCATTTTTATTTTTATTTTCCTTC
1 ATTTATTTCATTTCCATTTTTATTTTCATTC
45344089 ATTTATTT
1 ATTTATTT
45344097 TTGAAGACTT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (31 bp):
ATTTATTTCATTTCCATTTTTATTTTCATTC
Found at i:45344097 original size:25 final size:25
Alignment explanation
Indices: 45344043--45344098 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
45344033 TTTATTTCCA
*
45344043 TTTTTATTTTTATTTTTTTATTTCA
1 TTTTTATTTTTATTTTTTCATTTCA
45344068 TTTTTATTTTTATTTTCCTTCATTT-A
1 TTTTTATTTTTATTTT--TTCATTTCA
45344094 TTTTT
1 TTTTT
45344099 GAAGACTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 16 0.57
26 6 0.21
27 6 0.21
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (25 bp):
TTTTTATTTTTATTTTTTCATTTCA
Found at i:45345578 original size:17 final size:18
Alignment explanation
Indices: 45345556--45345589 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
45345546 CACATTGAAG
45345556 TGTTTT-ATCGAAAACCA
1 TGTTTTCATCGAAAACCA
45345573 TGTTTTCATCGAAAACC
1 TGTTTTCATCGAAAACC
45345590 CTTCTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCA
Found at i:45346912 original size:28 final size:28
Alignment explanation
Indices: 45346799--45346929 Score: 181
Period size: 28 Copynumber: 4.7 Consensus size: 28
45346789 TGGCCCCTTT
* *
45346799 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACTTTCATATGGCCCATC
* *
45346827 GGGACCAATCACTTTCATATGGCCCATC
1 AGGCCCAATCACTTTCATATGGCCCATC
*
45346855 GGGCCCAATCACTTTCATATGGCCCATC
1 AGGCCCAATCACTTTCATATGGCCCATC
* *
45346883 AGGCTCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACTTTCATATGGCCCATC
* *
45346911 AGGCCCACTCACATTCATA
1 AGGCCCAATCACTTTCATA
45346930 GTCATGCAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 92 1.00
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACTTTCATATGGCCCATC
Found at i:45347167 original size:16 final size:16
Alignment explanation
Indices: 45347146--45347195 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
45347136 CCAAACTTCT
*
45347146 GGCTTTTCAGCATTTC
1 GGCTTTTCGGCATTTC
*
45347162 GGCTTTTCGGCATTTT
1 GGCTTTTCGGCATTTC
* *
45347178 TGCTCTTCGGCATTTC
1 GGCTTTTCGGCATTTC
45347194 GG
1 GG
45347196 GATTTACCGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.08, C:0.24, G:0.24, T:0.44
Consensus pattern (16 bp):
GGCTTTTCGGCATTTC
Found at i:45349315 original size:15 final size:15
Alignment explanation
Indices: 45349293--45349329 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
45349283 CTTCTAGCAT
*
45349293 CCACATAACTCGCAC
1 CCACATAACTCACAC
*
45349308 CTACATAACTCACAC
1 CCACATAACTCACAC
45349323 CCACATA
1 CCACATA
45349330 CTTCCCTTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.38, C:0.43, G:0.03, T:0.16
Consensus pattern (15 bp):
CCACATAACTCACAC
Found at i:45351585 original size:28 final size:28
Alignment explanation
Indices: 45351549--45351651 Score: 118
Period size: 28 Copynumber: 3.7 Consensus size: 28
45351539 TGTCCTCTTT
* *
45351549 AGGCCCAATCTCATTCATATGGCCCACC
1 AGGCCCAATCACTTTCATATGGCCCACC
*
45351577 -GAGCCCAATCACTTTCATATGGCCCATC
1 AG-GCCCAATCACTTTCATATGGCCCACC
* **
45351605 AGGCCCAATCACTTTCACATGGCCCGTC
1 AGGCCCAATCACTTTCATATGGCCCACC
* *
45351633 AGGCCCATTCACATTCATA
1 AGGCCCAATCACTTTCATA
45351652 GTTATGCAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
27 1 0.02
28 63 0.97
29 1 0.02
ACGTcount: A:0.25, C:0.37, G:0.15, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACTTTCATATGGCCCACC
Found at i:45351890 original size:16 final size:16
Alignment explanation
Indices: 45351869--45351931 Score: 72
Period size: 16 Copynumber: 3.9 Consensus size: 16
45351859 AAACTTTTGG
45351869 CTTTTCGGCATTTCAA
1 CTTTTCGGCATTTCAA
**
45351885 CTTTTCGGCATTTTGA
1 CTTTTCGGCATTTCAA
* **
45351901 CTTTTCAGCATTTCGT
1 CTTTTCGGCATTTCAA
*
45351917 CTTTTCGACATTTCA
1 CTTTTCGGCATTTCA
45351932 GAATTTGCCG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.16, C:0.24, G:0.13, T:0.48
Consensus pattern (16 bp):
CTTTTCGGCATTTCAA
Found at i:45351905 original size:32 final size:32
Alignment explanation
Indices: 45351863--45351929 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
45351853 GTAGATAAAC
* * *
45351863 TTTTGGCTTTTCGGCATTTCAACTTTTCGGCA
1 TTTTGACTTTTCAGCATTTCAACTTTTCGACA
**
45351895 TTTTGACTTTTCAGCATTTCGTCTTTTCGACA
1 TTTTGACTTTTCAGCATTTCAACTTTTCGACA
45351927 TTT
1 TTT
45351930 CAGAATTTGC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.13, C:0.21, G:0.15, T:0.51
Consensus pattern (32 bp):
TTTTGACTTTTCAGCATTTCAACTTTTCGACA
Found at i:45351914 original size:24 final size:24
Alignment explanation
Indices: 45351867--45351937 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
45351857 ATAAACTTTT
* *
45351867 GGCTTTTCGGCATTTCA-ACTTTTC
1 GGCTTTTCGACATTTCAGA-ATTTC
* *
45351891 GGCATTTT-GACTTTTCAGCATTTC
1 GGC-TTTTCGACATTTCAGAATTTC
*
45351915 GTCTTTTCGACATTTCAGAATTT
1 GGCTTTTCGACATTTCAGAATTT
45351938 GCCGATCTAC
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
23 4 0.11
24 29 0.78
25 4 0.11
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.46
Consensus pattern (24 bp):
GGCTTTTCGACATTTCAGAATTTC
Found at i:45354759 original size:21 final size:22
Alignment explanation
Indices: 45354735--45354777 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
45354725 GCTTTAGTGG
45354735 TTGAGTGTTCT-GGTT-GTGTGT
1 TTGAG-GTTCTAGGTTCGTGTGT
*
45354756 TTGAGGTTTTAGGTTCGTGTGT
1 TTGAGGTTCTAGGTTCGTGTGT
45354778 CTGTGTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 9 0.47
22 6 0.32
ACGTcount: A:0.07, C:0.05, G:0.37, T:0.51
Consensus pattern (22 bp):
TTGAGGTTCTAGGTTCGTGTGT
Found at i:45355174 original size:12 final size:12
Alignment explanation
Indices: 45355157--45355183 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45355147 AGGGGACTAT
45355157 TTTTTTATTTTA
1 TTTTTTATTTTA
45355169 TTTTTTATTTTA
1 TTTTTTATTTTA
45355181 TTT
1 TTT
45355184 GGAAAGAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:45357579 original size:62 final size:62
Alignment explanation
Indices: 45357508--45357708 Score: 172
Period size: 62 Copynumber: 3.2 Consensus size: 62
45357498 TTTAATTATC
* * * * * *
45357508 AACAATGAGTCACACAACTTGGGCACACGCCCGTGTCCTTGGTCGTGTGGTTTTATACCATT
1 AACAGTGAGTCACACAACCTGGACACACGCCCGTGTCCCTGGCCGTGTGGTTTTATACCATG
* ** * *
45357570 AACAGTGAGTTACACGGCCTGGACACATGCTCGTGTCCCTGGCCGTGTGGTTTTATACCATG
1 AACAGTGAGTCACACAACCTGGACACACGCCCGTGTCCCTGGCCGTGTGGTTTTATACCATG
* * *** * * * *
45357632 AATAGTGAGTTACATGGCCT-AAGCACACGCCCGTGTCCCTGGCTGTATGGATTTACT-CCATG
1 AACAGTGAGTCACACAACCTGGA-CACACGCCCGTGTCCCTGGCCGTGTGGTTTTA-TACCATG
* *
45357694 AACAATGAGTTACAC
1 AACAGTGAGTCACAC
45357709 GGCCATTCGT
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
61 1 0.01
62 113 0.98
63 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.27
Consensus pattern (62 bp):
AACAGTGAGTCACACAACCTGGACACACGCCCGTGTCCCTGGCCGTGTGGTTTTATACCATG
Found at i:45363654 original size:18 final size:19
Alignment explanation
Indices: 45363611--45363655 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
45363601 AAATAATAAG
45363611 TAATT-AAATTAATTAAAA
1 TAATTCAAATTAATTAAAA
* *
45363629 TAA-GCAAATT-ATTTAAA
1 TAATTCAAATTAATTAAAA
45363646 TAATTCAAAT
1 TAATTCAAAT
45363656 ATAGTACTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (19 bp):
TAATTCAAATTAATTAAAA
Found at i:45368013 original size:40 final size:41
Alignment explanation
Indices: 45367878--45368063 Score: 254
Period size: 41 Copynumber: 4.6 Consensus size: 41
45367868 TACTCGAATG
*
45367878 ATATCCGGGCTAAG-TCCTGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAAGCGACT
* *
45367919 ATATCCGGACTAAGATCCGAAGGCATTGGTGCTAAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACT
*
45367960 ATATCCGGACTAAGATCCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACT
* * *
45368000 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAAGCGACT
*
45368040 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
45368064 CTTGTGCAAG
Statistics
Matches: 133, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.47
41 66 0.50
42 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACT
Found at i:45368023 original size:81 final size:79
Alignment explanation
Indices: 45367878--45368099 Score: 252
Period size: 81 Copynumber: 2.8 Consensus size: 79
45367868 TACTCGAATG
*
45367878 ATATCCGGGCTAAG-TCCTGAAGGCTTTTGTGCTAAGCGACTATATCCGGACTAAGAT-CCGAAG
1 ATATCCGGGCTAAGATCC-GAAGGC-TTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCCGAAG
* *
45367941 GCATTGGTGCTAAGCGACT
62 GCATTGATGCT-AGCGACC
*
45367960 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGATCCGAAGGC-TTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
* *
45368025 TTTATGCTAGTGACC
65 TTGATGCTAGCGACC
* * * * ** *
45368040 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGATCCGAAGGCTTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAG
45368100 ATGCTTGATT
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
78 14 0.11
79 16 0.13
80 28 0.23
81 35 0.28
82 27 0.22
83 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGATCCGAAGGCTTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TGATGCTAGCGACC
Found at i:45372517 original size:48 final size:49
Alignment explanation
Indices: 45372465--45372780 Score: 281
Period size: 48 Copynumber: 6.6 Consensus size: 49
45372455 TGTGCCAATA
*
45372465 TAAGACCACGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCATCGATATGAGAGCCAGTG
* * * * * *
45372513 TAAGACCATGTTTGGAACATGGCATTGGCAAT-GTTGTGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCATCGATATGAGAGCCAGTG
* * * * *
45372561 TACGACCATGTCTGGGACATGGCATC-GTCATTGATATGTA-CGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCATCGATATG-AGAGCCAGTG
** * *
45372609 TAAG-CTCATGTCTGGGTTATGGCATCGGCCA-C-ATTATGAGAGCTAGCG
1 TAAGAC-CATGTCTGGGACATGGCATCGGCCATCGA-TATGAGAGCCAGTG
* ** * * * * *
45372657 TAAGACCATATCTAAGACATCGCATCGG-CATTGAGACGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCATCGATATGAGAGCCAGTG
* * *
45372705 TAAGACCATGTCTGGGACATAGCATCGG-CATCGACATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCATCGATATGAGAGCCAGTG
* *
45372753 TAAGACCATGTTTGGAACATGGCATCGG
1 TAAGACCATGTCTGGGACATGGCATCGG
45372781 TAACTCACCC
Statistics
Matches: 212, Mismatches: 46, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
47 8 0.04
48 198 0.93
49 6 0.03
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (49 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCATCGATATGAGAGCCAGTG
Found at i:45372763 original size:144 final size:144
Alignment explanation
Indices: 45372465--45372780 Score: 354
Period size: 144 Copynumber: 2.2 Consensus size: 144
45372455 TGTGCCAATA
* * * **
45372465 TAAGACCACGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATGTTTGGAA
1 TAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGCGTAAGACCATATTAAGAA
* * * * * * * *
45372530 CATGGCATTGGCAATGTTGTGAGAGCCAGTGTACGACCATGTCTGGGACATGGCATCGTCATTGA
66 CATCGCATCGGCAATGTAGCGAGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCATCGA
* *
45372595 TATGTACGCTAGTG
131 CATGTACGCCAGTG
** *
45372609 TAAG-CTCATGTCTGGGTTATGGCATCGGCCAC-ATTATGAGAGCTAGCGTAAGACCATATCTAA
1 TAAGAC-CATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCCAGCGTAAGACCATAT-TAA
* *
45372672 G-ACATCGCATCGGCATTG-AGACGAGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGCA
63 GAACATCGCATCGGCAATGTAG-CGAGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCA
45372735 TCGACATGTGA-GCCAGTG
127 TCGACATGT-ACGCCAGTG
* *
45372753 TAAGACCATGTTTGGAACATGGCATCGG
1 TAAGACCATGTCTGGGACATGGCATCGG
45372781 TAACTCACCC
Statistics
Matches: 142, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
143 3 0.02
144 135 0.95
145 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (144 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGCGTAAGACCATATTAAGAA
CATCGCATCGGCAATGTAGCGAGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCATCGA
CATGTACGCCAGTG
Found at i:45374745 original size:21 final size:20
Alignment explanation
Indices: 45374716--45374755 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
45374706 AATCAGCACC
*
45374716 TTCAGATGCATCCACAACAAA
1 TTCAAATGCATCCA-AACAAA
45374737 TTCAAATGCATCCAAACAA
1 TTCAAATGCATCCAAACAA
45374756 GAATCAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.45, C:0.28, G:0.07, T:0.20
Consensus pattern (20 bp):
TTCAAATGCATCCAAACAAA
Found at i:45383000 original size:47 final size:47
Alignment explanation
Indices: 45382946--45383280 Score: 367
Period size: 47 Copynumber: 7.1 Consensus size: 47
45382936 TTAGGATTTT
*
45382946 ATGTGATGAATGTGAATGTGTATAGATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATGTGTATAGATGTGATAAGGCCGAATGGCCA
** * *
45382993 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATGTGTATAGATGTGATAAGGCCGAATGGCCA
**
45383040 ATGTGATGAATGTGAGCATGCATAT-G-TGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGA--ATGTGTATAGATGTGATAAGGCCGAATGGCCA
**
45383087 ATGTGATGAATGTGAGCATGCATAT-G-TGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGA--ATGTGTATAGATGTGATAAGGCCGAATGGCCA
** * *
45383134 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATGTGTATAGATGTGATAAGGCCGAATGGCCA
**
45383181 ATGTGATGAATGTGAGCATGCATAT-G-TGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGA--ATGTGTATAGATGTGATAAGGCCGAATGGCCA
* ** * * * * *
45383228 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAATGTGTATAGATGTGATAAGGCCGAATGGCCA
45383275 ATGTGA
1 ATGTGA
45383281 AATATATATA
Statistics
Matches: 247, Mismatches: 33, Indels: 16
0.83 0.11 0.05
Matches are distributed among these distances:
45 6 0.02
47 235 0.95
49 6 0.02
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAATGTGTATAGATGTGATAAGGCCGAATGGCCA
Found at i:45383046 original size:94 final size:94
Alignment explanation
Indices: 45382946--45383280 Score: 537
Period size: 94 Copynumber: 3.6 Consensus size: 94
45382936 TTAGGATTTT
** * * *
45382946 ATGTGATGAATGTGAATGTGTATAGATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATAGATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
45383011 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
*
45383040 ATGTGATGAATGTGAGCATGCATATG-TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 ATGTGATGAATGTGAACATGCATA-GATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
45383104 ATGCATATGTGTGATAAGGCCGAATGGCCA
65 ATGCATATGTGTGATAAGGCCGAATGGCCA
*
45383134 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATAGATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
45383199 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * * * *
45383228 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCAATGTGA
1 ATGTGATGAATGTGAACATGCATAGATGTGATAAGGCCGAATGGCCAATGTGA
45383281 AATATATATA
Statistics
Matches: 226, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
94 225 1.00
95 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATAGATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:45383120 original size:141 final size:141
Alignment explanation
Indices: 45382946--45383280 Score: 562
Period size: 141 Copynumber: 2.4 Consensus size: 141
45382936 TTAGGATTTT
* ** * * *
45382946 ATGTGATGAATGTGAATGTGTATAGATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
45383011 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGG
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGG
45383076 CCGAATGGCCA
131 CCGAATGGCCA
* * *
45383087 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
45383152 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGG
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGG
45383217 CCGAATGGCCA
131 CCGAATGGCCA
* * *
45383228 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCAATGTGA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
45383281 AATATATATA
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
141 181 1.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGG
CCGAATGGCCA
Found at i:45383360 original size:48 final size:48
Alignment explanation
Indices: 45383250--45383386 Score: 222
Period size: 48 Copynumber: 2.8 Consensus size: 48
45383240 TGAACATGCA
* *
45383250 TATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AGTGTG-AA-ATATGTATGAGATATG
45383300 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
45383348 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
45383387 GGCGATGTGC
Statistics
Matches: 84, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
48 54 0.64
49 2 0.02
50 27 0.32
51 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
Found at i:45383641 original size:37 final size:37
Alignment explanation
Indices: 45383522--45383640 Score: 184
Period size: 37 Copynumber: 3.2 Consensus size: 37
45383512 ACATGAAACT
45383522 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
**
45383559 CAGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
* * * *
45383596 TGGAGATTTTGTCCGAGTAAGACCCGATAACTTCGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
45383633 TGGAGATT
1 TGGAGATT
45383641 TCGTCTGAGC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:45390826 original size:80 final size:80
Alignment explanation
Indices: 45390693--45390950 Score: 385
Period size: 80 Copynumber: 3.2 Consensus size: 80
45390683 GGATTGATAA
*
45390693 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
45390758 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * *
45390773 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACTGGGCCAAGTCCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
*
45390838 TGCGAGTTACTATAA
66 TGCGAGTTACTATAT
* **
45390853 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTTTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
* *
45390918 AGCCAG-TAGCTATAT
66 TGCGAGTTA-CTATAT
**
45390933 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
45390951 TACTTGCTTT
Statistics
Matches: 161, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
79 16 0.10
80 145 0.90
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Done.