Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 147 of 295
Found at i:45866893 original size:57 final size:57
Alignment explanation
Indices: 45866826--45866961 Score: 227
Period size: 57 Copynumber: 2.4 Consensus size: 57
45866816 ACAATTAAGG
*
45866826 TTTAGCCTGGACTGGTGATCTTAATTGAGCTTTTTTGAGCATACATTACCTAATGGA
1 TTTAGCCTGGACTGGTGATCTTAATTGAGCTCTTTTGAGCATACATTACCTAATGGA
* * *
45866883 TTTAGCCTGGACTGGTGATCCTAATTGAGCTCTTTTGAGCATACGTTACTTAATGGA
1 TTTAGCCTGGACTGGTGATCTTAATTGAGCTCTTTTGAGCATACATTACCTAATGGA
*
45866940 TTTAGCCTGGACTGGTAATCTT
1 TTTAGCCTGGACTGGTGATCTT
45866962 GTAATACGAT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 73 1.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (57 bp):
TTTAGCCTGGACTGGTGATCTTAATTGAGCTCTTTTGAGCATACATTACCTAATGGA
Found at i:45870780 original size:15 final size:14
Alignment explanation
Indices: 45870727--45870780 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
45870717 TTCCTTTTTC
45870727 TTATTTT-TATTA-
1 TTATTTTATATTAT
* *
45870739 TTA-GTTATTTTAT
1 TTATTTTATATTAT
45870752 TTATTTTATATTAT
1 TTATTTTATATTAT
45870766 TTATTTTACTATTAT
1 TTATTTTA-TATTAT
45870781 GTTTATGTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
11 2 0.06
12 7 0.21
13 3 0.09
14 16 0.47
15 6 0.18
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (14 bp):
TTATTTTATATTAT
Found at i:45872532 original size:28 final size:26
Alignment explanation
Indices: 45872477--45872589 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
45872467 AGCATGGCTG
* *
45872477 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
45872503 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
45872531 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
45872558 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
45872586 CCAG
1 CCAG
45872590 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
26 6 0.08
27 39 0.50
28 33 0.42
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:45872560 original size:55 final size:54
Alignment explanation
Indices: 45872477--45872589 Score: 165
Period size: 55 Copynumber: 2.1 Consensus size: 54
45872467 AGCATGGCTG
*
45872477 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * *
45872531 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
45872586 CCAG
1 CCAG
45872590 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 19 0.36
55 34 0.64
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:45873023 original size:8 final size:8
Alignment explanation
Indices: 45873007--45873038 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
45872997 ACCAAAATAC
45873007 CGGCTTTT
1 CGGCTTTT
*
45873015 CGGCATTT
1 CGGCTTTT
45873023 CGGCTTTT
1 CGGCTTTT
45873031 CGGCTTTT
1 CGGCTTTT
45873039 GTCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:45880332 original size:27 final size:26
Alignment explanation
Indices: 45880297--45880406 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 26
45880287 AGCATGGCTG
* * *
45880297 CCAGAACAGATAATGTGACGGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
45880323 CCAGACACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
45880351 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
45880378 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
45880406 C
1 C
45880407 TAGGACGCTT
Statistics
Matches: 74, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
26 6 0.08
27 39 0.53
28 29 0.39
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:45880382 original size:55 final size:54
Alignment explanation
Indices: 45880297--45880406 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 54
45880287 AGCATGGCTG
* *
45880297 CCAGAACAGATAATGTGACGGAGTCACCAGACACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGA-ACAGATAATTCGTGGCAGAGCCA
* * * *
45880351 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGAACAGATAATTCGTGGCAGAGCCA
45880406 C
1 C
45880407 TAGGACGCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
54 19 0.40
55 29 0.60
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTCGTGGCAGAGCCA
Found at i:45883882 original size:37 final size:40
Alignment explanation
Indices: 45883824--45883913 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 40
45883814 ATAGCCCAGC
*
45883824 TATGGTCTTAAACAAAATCTC-AT-A-GCCATATCCTAGA
1 TATGGTCTTACACAAAATCTCAATGATGCCATATCCTAGA
* *
45883861 TATGGTCTTACACGAAGTCTCATAATGATGCCATATCCTAGA
1 TATGGTCTTACACAAAATCTC--AATGATGCCATATCCTAGA
45883903 -ATGGTCTTACA
1 TATGGTCTTACA
45883914 TATAGTCTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
37 18 0.40
40 2 0.04
41 12 0.27
42 13 0.29
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.31
Consensus pattern (40 bp):
TATGGTCTTACACAAAATCTCAATGATGCCATATCCTAGA
Found at i:45885774 original size:6 final size:6
Alignment explanation
Indices: 45885754--45885804 Score: 77
Period size: 6 Copynumber: 8.5 Consensus size: 6
45885744 AGTCCATTTG
*
45885754 TTTTA- TTTTATT TTTTAT TTTTAT TTTTAT TTTTAT GTTTAT TTTTAT
1 TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
45885802 TTT
1 TTT
45885805 CTTAGACTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
5 5 0.12
6 32 0.76
7 5 0.12
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:45886765 original size:10 final size:10
Alignment explanation
Indices: 45886745--45886779 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
45886735 CTCATGATAG
45886745 AAAAACAAAAA
1 AAAAAC-AAAA
45886756 AAAAACAAAA
1 AAAAACAAAA
*
45886766 CAAAACAAAA
1 AAAAACAAAA
45886776 AAAA
1 AAAA
45886780 TACATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 16 0.73
11 6 0.27
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAACAAAA
Found at i:45886767 original size:16 final size:17
Alignment explanation
Indices: 45886746--45886777 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
45886736 TCATGATAGA
45886746 AAAACAAAA-AAAAAAC
1 AAAACAAAACAAAAAAC
45886762 AAAACAAAACAAAAAA
1 AAAACAAAACAAAAAA
45886778 AATACATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAACAAAACAAAAAAC
Found at i:45887675 original size:52 final size:52
Alignment explanation
Indices: 45887597--45887700 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
45887587 CCTTTTTGGG
45887597 TTGCGGAAGCGAATTTTAAAAGTAATCGATTTACGAAAACGTGATGTTTAAA
1 TTGCGGAAGCGAATTTTAAAAGTAATCGATTTACGAAAACGTGATGTTTAAA
*
45887649 TTGCGGAAGCTAATTTTAAAAGTAATCGATTTACGAAAACGTGATGTTTAAA
1 TTGCGGAAGCGAATTTTAAAAGTAATCGATTTACGAAAACGTGATGTTTAAA
45887701 AGTTAAGTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (52 bp):
TTGCGGAAGCGAATTTTAAAAGTAATCGATTTACGAAAACGTGATGTTTAAA
Found at i:45888183 original size:32 final size:32
Alignment explanation
Indices: 45888147--45888229 Score: 114
Period size: 32 Copynumber: 2.6 Consensus size: 32
45888137 TATCATAGTC
*
45888147 TCAATTGGGCCTAGCCCATCTCAGAA-TCAATA
1 TCAATTGGGCCTAGCCCATATCAGAACT-AATA
* *
45888179 TCAATTAGGCCTAGCCCATATCAGAACTAGTA
1 TCAATTGGGCCTAGCCCATATCAGAACTAATA
*
45888211 TCAGTTGGGCCTAGCCCAT
1 TCAATTGGGCCTAGCCCAT
45888230 TTCAATATCA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
32 44 0.98
33 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (32 bp):
TCAATTGGGCCTAGCCCATATCAGAACTAATA
Found at i:45902139 original size:48 final size:48
Alignment explanation
Indices: 45902053--45902320 Score: 315
Period size: 48 Copynumber: 5.6 Consensus size: 48
45902043 TAAAGTACCA
* * * * * * * *
45902053 ATGCCATGTCCCCGACATGGTTTTAGA-TGACTCTACATATCATTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCAC-ATATATCATCGCCG
* *
45902101 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * * *
45902149 ATGCCATGCCCCAAACATGGTCTTACA-TAGGCACATGTATCACCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GGCACATATATCATCGCCG
* * * *
45902197 ATGCCATGTCCCAGACCTGGTCTTCCACAGGCACATTTATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
*
45902245 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* *
45902293 ATACCATGTCCTAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
45902321 AGAATCTCAT
Statistics
Matches: 193, Mismatches: 24, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
47 1 0.01
48 188 0.97
49 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
Found at i:45902321 original size:48 final size:48
Alignment explanation
Indices: 45902089--45902322 Score: 333
Period size: 48 Copynumber: 4.9 Consensus size: 48
45902079 ATGACTCTAC
* * * *
45902089 ATATCATTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* * * *
45902137 ATATCATTGCCGATGCCATGCCCCAAACATGGTCTTACATAGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* * * *
45902185 GTATCACCGCCGATGCCATGTCCCAGACCTGGTCTTCCACAGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
*
45902233 TTATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
* *
45902281 ATATCATCGCCGATACCATGTCCTAGACATGGTCTTACACAG
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAG
45902323 AATCTCATTT
Statistics
Matches: 165, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 165 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (48 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
Found at i:45909488 original size:56 final size:56
Alignment explanation
Indices: 45909402--45909521 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
45909392 ACAAGGGATG
45909402 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
45909458 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
45909514 ATGGGCAA
1 ATGGGCAA
45909522 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:45910974 original size:47 final size:47
Alignment explanation
Indices: 45910887--45911545 Score: 889
Period size: 47 Copynumber: 13.6 Consensus size: 47
45910877 GTATATTTGA
* *
45910887 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
*
45910936 ATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
*
45910983 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCAATGTG
1 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTG
45911034 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
* *
45911083 ATGAATGTGAAAGTGTATATATATATGTTATAAGGCCTAATGGCCAATGTG
1 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTG
*
45911134 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
45911183 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTG
* *
45911234 ATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
45911281 ATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
*
45911328 ATGAATGTGAACA-TG-AGTATGTGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTA-TATATGTGATAAGGCCGAATGGCCAATGTG
* *
45911375 ATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
45911422 ATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
45911469 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* * *
45911516 ATGGATGTGGAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
45911546 TCCCGAAGGG
Statistics
Matches: 572, Mismatches: 26, Indels: 26
0.92 0.04 0.04
Matches are distributed among these distances:
46 2 0.00
47 319 0.56
49 111 0.19
51 139 0.24
52 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:45911423 original size:22 final size:22
Alignment explanation
Indices: 45911396--45911517 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
45911386 CATGTGTATG
45911396 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
45911418 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
45911443 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
45911465 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
45911490 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
45911512 TGTGAT
1 TGTGAT
45911518 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:45915481 original size:40 final size:40
Alignment explanation
Indices: 45915437--45915517 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
45915427 ACCTAATTGC
*
45915437 TATAATTAGCAAATTTTGCACCTTTTTCAATTTAGTCTTT
1 TATAATTAGCAAATTTTGCACCATTTTCAATTTAGTCTTT
*
45915477 TATAATTAGCAAGTTTTGCACCATTTTCAATTTAGTCTTT
1 TATAATTAGCAAATTTTGCACCATTTTCAATTTAGTCTTT
45915517 T
1 T
45915518 TTTTACTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (40 bp):
TATAATTAGCAAATTTTGCACCATTTTCAATTTAGTCTTT
Found at i:45916712 original size:38 final size:38
Alignment explanation
Indices: 45916670--45917001 Score: 198
Period size: 38 Copynumber: 9.1 Consensus size: 38
45916660 AAAGGCCTGA
* * * * *
45916670 ATATAGTACCAGTACTAGGCCTGTGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
45916708 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
45916746 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** **** *
45916784 ATATAAT--GGGTTTTAA-CC--C-GGATAT-A-----
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
45916810 ATACCAGTA-CAA-----AGCCTGCGGGATTTAACCCGG
1 ATA-TAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
45916843 ATATAATATCAGCACGAAGCTTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
* * *
45916883 ATATATTACCAGCACGAAGCCTGAGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * * **
45916921 AT-TATTACTAGCACGAAGCTTGCAGGTCTTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGC-GGGATTTAACCCGG
* * *
45916959 ATATATTACCAGGACGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
45916999 ATA
1 ATA
45917002 CACATCAAAT
Statistics
Matches: 227, Mismatches: 43, Indels: 46
0.72 0.14 0.15
Matches are distributed among these distances:
23 1 0.00
24 2 0.01
26 4 0.02
27 7 0.03
28 1 0.00
31 1 0.00
32 8 0.04
33 6 0.03
35 2 0.01
36 3 0.01
37 18 0.08
38 104 0.46
39 34 0.15
40 36 0.16
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:45916828 original size:59 final size:59
Alignment explanation
Indices: 45916736--45916849 Score: 201
Period size: 59 Copynumber: 1.9 Consensus size: 59
45916726 GCCTACGGGA
* *
45916736 TTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATGGGT
1 TTTAACCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATGGGT
*
45916795 TTTAACCCGGATATAATACCAGTACAAAGCCTGCGGGATTTAACCCGGATATAAT
1 TTTAACCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
45916850 ATCAGCACGA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (59 bp):
TTTAACCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATGGGT
Found at i:45916868 original size:97 final size:99
Alignment explanation
Indices: 45916693--45916887 Score: 304
Period size: 97 Copynumber: 2.0 Consensus size: 99
45916683 ACTAGGCCTG
* *
45916693 TGGGATTTAACCCGGATATAATACCAGCACGAAGCCTACGGGATTTAACCCGGATATATTACCAG
1 TGGGATTTAACCCGGATATAATACCAGCACAAAGCCTACGGGATTTAACCCGGATATAATACCAG
45916758 CACGAAGCCTGCGGG-ATTTAA-CCCGGATATAA
66 CACGAAGCCTGCGGGTATTTAAGCCCGGATATAA
* * * *
45916790 TGGGTTTTAACCCGGATATAATACCAGTACAAAGCCTGCGGGATTTAACCCGGATATAATATCAG
1 TGGGATTTAACCCGGATATAATACCAGCACAAAGCCTACGGGATTTAACCCGGATATAATACCAG
* *
45916855 CACGAAGCTTGCGGGTCTTTAAGCCCGGATATA
66 CACGAAGCCTGCGGGTATTTAAGCCCGGATATA
45916888 TTACCAGCAC
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
97 73 0.83
98 5 0.06
99 10 0.11
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (99 bp):
TGGGATTTAACCCGGATATAATACCAGCACAAAGCCTACGGGATTTAACCCGGATATAATACCAG
CACGAAGCCTGCGGGTATTTAAGCCCGGATATAA
Found at i:45917343 original size:43 final size:44
Alignment explanation
Indices: 45917282--45917365 Score: 134
Period size: 43 Copynumber: 1.9 Consensus size: 44
45917272 ACATTTCATT
*
45917282 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCG-ATATCGTC
1 TCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGAATATCGTC
* *
45917325 TCACCGGTATTATAGCCTGCTAGGCCCGAAGCCCGAATATC
1 TCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGAATATC
45917366 ATATTTCGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 32 0.86
44 5 0.14
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGAATATCGTC
Found at i:45923329 original size:45 final size:45
Alignment explanation
Indices: 45923265--45923351 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
45923255 TATGCAATCT
45923265 AAACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 AAACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
* * *
45923310 AAACTCATTGAGTTTTGGTCTGAGTTCGTGATATATGTGACA
1 AAACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGACA
45923352 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.37
Consensus pattern (45 bp):
AAACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
Found at i:45939720 original size:40 final size:40
Alignment explanation
Indices: 45939654--45939929 Score: 455
Period size: 40 Copynumber: 6.9 Consensus size: 40
45939644 ATAACCGCAA
* * * *
45939654 GCACAATTGCCTT-GGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
45939693 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
45939733 GCATAATTGCCTTCGGGTCTTAGCCCGAATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45939773 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45939813 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45939853 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45939893 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
45939930 ATGCTCATGC
Statistics
Matches: 220, Mismatches: 16, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 11 0.05
40 209 0.95
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45946958 original size:40 final size:40
Alignment explanation
Indices: 45946907--45947182 Score: 464
Period size: 40 Copynumber: 6.9 Consensus size: 40
45946897 ATAACCGCAA
* * * *
45946907 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
45946947 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
45946987 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45947027 GCACAAATGCCTT-GGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45947066 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45947106 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45947146 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
45947183 ATGCTCATGC
Statistics
Matches: 221, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 38 0.17
40 183 0.83
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45947089 original size:119 final size:120
Alignment explanation
Indices: 45946907--45947182 Score: 464
Period size: 119 Copynumber: 2.3 Consensus size: 120
45946897 ATAACCGCAA
* * * * *
45946907 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
45946972 CGGATATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45947027 GCACAAATGCCTT-GGGTTTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
45947091 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45947146 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
45947183 ATGCTCATGC
Statistics
Matches: 145, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
119 111 0.77
120 34 0.23
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45961565 original size:24 final size:24
Alignment explanation
Indices: 45961538--45961584 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
45961528 CTAGATTTCC
**
45961538 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
45961562 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
45961585 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:45963789 original size:45 final size:45
Alignment explanation
Indices: 45963723--45963942 Score: 295
Period size: 45 Copynumber: 5.0 Consensus size: 45
45963713 ATATCATACA
* *
45963723 ATACTATTTGGGCCTTTGAGCCTAGCATGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* ** * *
45963768 ACACTATTCGAACCTTTGAGCCTAGCAGGCTATAATGCTGGTCAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* * *
45963813 ATACTATTCGGGCCTTTGAGCCTAGCAGGGTGTAATACCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
45963858 ATACTATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
45963903 --ACTATTCGGG-CTTTGAGCCTAGCAGGCGA-AATGCCAGTGA
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
45963943 ATGAATTCGG
Statistics
Matches: 153, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
41 10 0.07
42 17 0.11
43 10 0.07
45 116 0.76
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:45970418 original size:47 final size:47
Alignment explanation
Indices: 45970362--45970459 Score: 187
Period size: 47 Copynumber: 2.1 Consensus size: 47
45970352 TAAGTTGGAT
*
45970362 TTAAGCTTGTTAAATTTGTTCTTAATAATTTCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
45970409 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
45970456 TTAA
1 TTAA
45970460 AGAAAATTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (47 bp):
TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
Found at i:45971303 original size:45 final size:45
Alignment explanation
Indices: 45971238--45971445 Score: 337
Period size: 45 Copynumber: 4.6 Consensus size: 45
45971228 TATCGTACAG
45971238 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
*
45971283 CACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
*
45971328 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTTGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
* ***
45971373 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCAATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
* *
45971418 TACTATTCGGG-CTTCGAGCCTAGTAGGC
1 TACTATTCGGGCCTTTGAGCCTAGCAGGC
45971446 GAAATGCCAG
Statistics
Matches: 155, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
44 16 0.10
45 139 0.90
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
Found at i:45974911 original size:12 final size:13
Alignment explanation
Indices: 45974887--45974915 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
45974877 GGGCTATAAC
45974887 TATTGCATTTATT
1 TATTGCATTTATT
45974900 TATTGC-TTTATT
1 TATTGCATTTATT
45974912 TATT
1 TATT
45974916 CATGATGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:45982043 original size:22 final size:22
Alignment explanation
Indices: 45982017--45982061 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
45982007 ATTATGTGTA
45982017 TTAATTCATAGTATAA-TTAATT
1 TTAATTCATA-TATAATTTAATT
* *
45982039 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
45982061 T
1 T
45982062 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:45986302 original size:5 final size:5
Alignment explanation
Indices: 45986292--45986325 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
45986282 TTTCTTTGAG
45986292 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
45986326 TAGTATAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:45988010 original size:28 final size:28
Alignment explanation
Indices: 45987974--45988068 Score: 102
Period size: 28 Copynumber: 3.4 Consensus size: 28
45987964 ATATTGTGAT
* *
45987974 AGAGTCACCAGATACAGATAATTGTGGT
1 AGAGCCACCAGATACAGATAATTGTGGC
* * * *
45988002 AGGGCCACCAGAAATAGATATTTGTGGC
1 AGAGCCACCAGATACAGATAATTGTGGC
* * *
45988030 AGAGGCACTAGAT-CAGATATTTGTGGC
1 AGAGCCACCAGATACAGATAATTGTGGC
45988057 AGAGCCACCAGA
1 AGAGCCACCAGA
45988069 ACGCTTCATT
Statistics
Matches: 54, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
27 23 0.43
28 31 0.57
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (28 bp):
AGAGCCACCAGATACAGATAATTGTGGC
Found at i:45988047 original size:55 final size:55
Alignment explanation
Indices: 45987959--45988069 Score: 143
Period size: 55 Copynumber: 2.0 Consensus size: 55
45987949 TGGCTGCAAT
* * * *
45987959 AATAGATATTGTGATAGAGTCACCAGATACAGATAATTGTGGTAGGGCCACCAGA
1 AATAGATATTGTGACAGAGGCACCAGATACAGATAATTGTGGCAGAGCCACCAGA
* * *
45988014 AATAGATATTTGTGGCAGAGGCACTAGAT-CAGATATTTGTGGCAGAGCCACCAGA
1 AATAGATA-TTGTGACAGAGGCACCAGATACAGATAATTGTGGCAGAGCCACCAGA
45988069 A
1 A
45988070 CGCTTCATTC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
55 32 0.67
56 16 0.33
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.23
Consensus pattern (55 bp):
AATAGATATTGTGACAGAGGCACCAGATACAGATAATTGTGGCAGAGCCACCAGA
Found at i:45989172 original size:17 final size:17
Alignment explanation
Indices: 45989150--45989182 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
45989140 TCGGCTATGG
45989150 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
45989167 AGAAAAGAAAAGATGA
1 AGAAAAGAAAAGATGA
45989183 GAAGGGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:45995691 original size:490 final size:490
Alignment explanation
Indices: 45994771--45995754 Score: 1801
Period size: 490 Copynumber: 2.0 Consensus size: 490
45994761 CTAGGCGCAA
45994771 AAGTGTAAATATGCAAAAGTTTAGGGGCAAAATTGTAATTTTTCCAAAGTATGAGTTAAGGACTG
1 AAGTGTAAATATGCAAAAGTTTAGGGGCAAAATTGTAATTTTTCCAAAGTATGAGTTAAGGACTG
* *
45994836 TTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCGAAAAATGAGATTTG
66 TTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCGAAAAACGAGATCTG
*
45994901 AACCTAGAATAAGAGAAAAATCAAAAATTAGGAAAGTTGGTAAAATGATCGTTTTAGTATCGAGG
131 AACCTAGAATAAGAGAAAAATCAAAAATTAGGAAAGTTGGTAAAATGACCGTTTTAGTATCGAGG
45994966 TAAGTTCACATGTATAATAAGAATTAATTTATGCATGTTTCAATGTAAAATTGATATATTTATTA
196 TAAGTTCACATGTATAATAAGAATTAATTTATGCATGTTTCAATGTAAAATTGATATATTTATTA
*
45995031 TGATTTCTGAGTTGTTGAAAGTATGTAAGTTGGTATGCTAATAATACAGCAATAATGTTGTAATT
261 TGATTTCTGAGTTGTTGAAAGTATGTAAGTTGGTATGATAATAATACAGCAATAATGTTGTAATT
45995096 TATATTTGAAAGTTAAATTTAGTGATTAATTGAATTATGTTAAATTAAATGATTATGGTGCCAAG
326 TATATTTGAAAGTTAAATTTAGTGATTAATTGAATTATGTTAAATTAAATGATTATGGTGCCAAG
*
45995161 TTTATGAATTGATTTAAAAATATGTCTATGGTACATGAAGTGAATTTAATTATCTTACATAAATG
391 TTTATGAATTGATTTAAAAATATGTCTATGGTACATGAAGTGAATTTAATTATCATACATAAATG
45995226 TGATTTCTATGATTATGGATATTATGGGAAATTAT
456 TGATTTCTATGATTATGGATATTATGGGAAATTAT
*
45995261 AAGTGTAAATATGCAAAAGTTTAGGGGCAAAATTGTAATTTTTCCAAAGTTTGAGTTAAGGACTG
1 AAGTGTAAATATGCAAAAGTTTAGGGGCAAAATTGTAATTTTTCCAAAGTATGAGTTAAGGACTG
45995326 TTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCGAAAAACGAGATCTG
66 TTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCGAAAAACGAGATCTG
* * *
45995391 AACCTAGAATGAGAGAAAAATCAAAAATTGGGAAAGTTGGTAAAATGGCCGTTTTAGTATCGAGG
131 AACCTAGAATAAGAGAAAAATCAAAAATTAGGAAAGTTGGTAAAATGACCGTTTTAGTATCGAGG
* * *
45995456 TAAGTTCATATGTATAATAAGCATTAATTTATGCATGTTTCAATGTGAAATTGATATATTTATTA
196 TAAGTTCACATGTATAATAAGAATTAATTTATGCATGTTTCAATGTAAAATTGATATATTTATTA
*
45995521 TGATTTTTGA-TATGTTGAAAGTATGTAAGTTGGTATGATAATAATACAGCAATAATGTTGTAAT
261 TGATTTCTGAGT-TGTTGAAAGTATGTAAGTTGGTATGATAATAATACAGCAATAATGTTGTAAT
45995585 TTATATTTGAAAGTTAAATTTAGTGAATTAATTGAATTATGTTAAATTAAATGATTATGGTGCCA
325 TTATATTTGAAAGTTAAATTTAGTG-ATTAATTGAATTATGTTAAATTAAATGATTATGGTGCCA
*
45995650 AGTTTATGAATTGATTTAAAAATATGTCTA-GGTACATGAAGTGCATTTAATTATCATACATAAA
389 AGTTTATGAATTGATTTAAAAATATGTCTATGGTACATGAAGTGAATTTAATTATCATACATAAA
*
45995714 TGTGATTTCTATGATTATGGATATTATGGGAAATTGT
454 TGTGATTTCTATGATTATGGATATTATGGGAAATTAT
45995751 AAGT
1 AAGT
45995755 TCATATGATT
Statistics
Matches: 477, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
489 1 0.00
490 407 0.85
491 69 0.14
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.37
Consensus pattern (490 bp):
AAGTGTAAATATGCAAAAGTTTAGGGGCAAAATTGTAATTTTTCCAAAGTATGAGTTAAGGACTG
TTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCGAAAAACGAGATCTG
AACCTAGAATAAGAGAAAAATCAAAAATTAGGAAAGTTGGTAAAATGACCGTTTTAGTATCGAGG
TAAGTTCACATGTATAATAAGAATTAATTTATGCATGTTTCAATGTAAAATTGATATATTTATTA
TGATTTCTGAGTTGTTGAAAGTATGTAAGTTGGTATGATAATAATACAGCAATAATGTTGTAATT
TATATTTGAAAGTTAAATTTAGTGATTAATTGAATTATGTTAAATTAAATGATTATGGTGCCAAG
TTTATGAATTGATTTAAAAATATGTCTATGGTACATGAAGTGAATTTAATTATCATACATAAATG
TGATTTCTATGATTATGGATATTATGGGAAATTAT
Found at i:45999904 original size:28 final size:28
Alignment explanation
Indices: 45999849--45999962 Score: 153
Period size: 28 Copynumber: 4.2 Consensus size: 28
45999839 AGCATGGCTG
* * *
45999849 CCAGA-ACAGATA-TTGTGACAAAGTCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* *
45999875 CCAGATACAGATAATTGTGGCAGGGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
*
45999903 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
45999931 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
45999958 CCAGA
1 CCAGA
45999963 ACGCTTCCCC
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.06
27 33 0.42
28 40 0.51
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGGCAGAGCCA
Found at i:45999935 original size:22 final size:24
Alignment explanation
Indices: 45999881--45999960 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 24
45999871 GTCACCAGAT
* *
45999881 ACAGATAATTGTGGCAGGGCCACC
1 ACAGATATTTGTGGCAGAGCCACC
45999905 AGAAACAGATATTTGTGGCAGAGCCACC
1 ----ACAGATATTTGTGGCAGAGCCACC
45999933 AGATCAGATATTTGTGGCAGAGCCACC
1 --A-CAGATATTTGTGGCAGAGCCACC
45999960 A
1 A
45999961 GAACGCTTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
25 1 0.02
26 2 0.04
27 23 0.48
28 22 0.46
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.19
Consensus pattern (24 bp):
ACAGATATTTGTGGCAGAGCCACC
Found at i:45999941 original size:55 final size:55
Alignment explanation
Indices: 45999849--45999963 Score: 162
Period size: 55 Copynumber: 2.1 Consensus size: 55
45999839 AGCATGGCTG
* *
45999849 CCAG-AACAGATATTGTGACAAAGTCACCAGATACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATATTGTGACAAAGCCACCAGATACAGATAATTGTGGCAGAGCCA
* * *
45999903 CCAGAAACAGATATTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATA-TTGTGACAAAGCCACCAGATACAGATAATTGTGGCAGAGCCA
45999958 CCAGAA
1 CCAGAA
45999964 CGCTTCCCCC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 4 0.07
55 33 0.61
56 17 0.31
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (55 bp):
CCAGAAACAGATATTGTGACAAAGCCACCAGATACAGATAATTGTGGCAGAGCCA
Found at i:46001067 original size:17 final size:17
Alignment explanation
Indices: 46001045--46001077 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
46001035 TCGGCTATGG
46001045 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
46001062 AGAAAAGAAAAGATGA
1 AGAAAAGAAAAGATGA
46001078 GAAGGGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:46011237 original size:27 final size:27
Alignment explanation
Indices: 46011193--46011303 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
46011183 TGGCTGCCAA
* *
46011193 AACAGATA-TTGTGACAGAGTCACCAG
1 AACAGATATTTGTGGCAGAGCCACCAG
*
46011219 ATACAAATA-TTGTGGCAGAGCCACCAG
1 A-ACAGATATTTGTGGCAGAGCCACCAG
*
46011246 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATATTTGTGGCAGAGCCACCAG
46011273 AAACAGATATTTGTGGCATG-GCCACCAG
1 -AACAGATATTTGTGGCA-GAGCCACCAG
46011301 AAC
1 AAC
46011304 GCTTCCACCA
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 43 0.57
28 25 0.33
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (27 bp):
AACAGATATTTGTGGCAGAGCCACCAG
Found at i:46017872 original size:68 final size:64
Alignment explanation
Indices: 46017731--46017878 Score: 154
Period size: 68 Copynumber: 2.2 Consensus size: 64
46017721 TGGAACAATG
* * * * * *
46017731 CATGCAACCTAGCTACATATATCCCGTAGCTCTCTTGTATACATGGTGTACACATAGTATCACC
1 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTACACATGATGTACACATAGCACCACA
* *
46017795 CATGCGACCTAGCTACATCATAATGCCTTGTAGCTCTCTTGTACACATGATGTGCAC-TCAGCAC
1 CATGCGACCTAGCTACAT-AT-AT-CC-CGTAGCTCTCTTGTACACATGATGTACACAT-AGCAC
*
46017859 CATA
61 CACA
*
46017863 CATGTGACCTAGCTAC
1 CATGCGACCTAGCTAC
46017879 GTTCCATCTA
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
64 17 0.25
65 2 0.03
66 2 0.03
67 3 0.04
68 45 0.65
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (64 bp):
CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTACACATGATGTACACATAGCACCACA
Found at i:46018577 original size:30 final size:30
Alignment explanation
Indices: 46018543--46018603 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
46018533 TCATTAACGC
*
46018543 AAACTTTGGAAAAATTACAGTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * * *
46018573 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
46018603 A
1 A
46018604 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:46026934 original size:20 final size:20
Alignment explanation
Indices: 46026890--46026928 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
46026880 AGAGACTAAA
* *
46026890 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
46026910 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTCTAAAATTT
46026929 TGTGAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:46050047 original size:51 final size:51
Alignment explanation
Indices: 46049972--46050073 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
46049962 AACCTACTGT
*
46049972 CTGTTAAAAATTTACCTATTGAATTCACTGAATTTATGGCAGAAGTTTCAA
1 CTGTTAAAAATTTACCTATTGAATTCACTGAATTTATGACAGAAGTTTCAA
*
46050023 CTGTTAAAAATTTACCTATTGAATTCACTGAATTTGTGACAGAAGTTTCAA
1 CTGTTAAAAATTTACCTATTGAATTCACTGAATTTATGACAGAAGTTTCAA
46050074 ACCTCCTAGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (51 bp):
CTGTTAAAAATTTACCTATTGAATTCACTGAATTTATGACAGAAGTTTCAA
Found at i:46050335 original size:72 final size:72
Alignment explanation
Indices: 46050218--46050362 Score: 256
Period size: 72 Copynumber: 2.0 Consensus size: 72
46050208 TTAACCCAAT
46050218 ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAAC-GATGAATTGCT
1 ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAACAG-TGAATTGCT
46050282 TCATGTTG
65 TCATGTTG
*
46050290 ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTGAGAACAGTGAATTGCTT
1 ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAACAGTGAATTGCTT
*
46050355 CGTGTTG
66 CATGTTG
46050362 A
1 A
46050363 ATCTGATAAA
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
72 69 0.99
73 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.32
Consensus pattern (72 bp):
ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAACAGTGAATTGCTT
CATGTTG
Found at i:46054796 original size:57 final size:58
Alignment explanation
Indices: 46054650--46054799 Score: 160
Period size: 57 Copynumber: 2.6 Consensus size: 58
46054640 TATTGACCTT
* * * * * *
46054650 GTTATAGAAAAGATTTAGCCTGGACGGGTAATCCTGATATAATACCTCTCGAGCATAC
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATAGAACACCTCTCGAGCATAC
* * * * * * *
46054708 TTTATGATTAAGG-TTTAGCCTAGACTAGTAATCCTAATCGAGCCCCTCT-GAGCATAC
1 GTTAT-ATAAAGGATTTAGCCTGGACTGGTAATCCTAATAGAACACCTCTCGAGCATAC
46054765 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
46054800 GTTATACGAT
Statistics
Matches: 73, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
56 6 0.08
57 32 0.44
58 31 0.42
59 4 0.05
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (58 bp):
GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATAGAACACCTCTCGAGCATAC
Found at i:46061849 original size:53 final size:53
Alignment explanation
Indices: 46061776--46061883 Score: 198
Period size: 53 Copynumber: 2.0 Consensus size: 53
46061766 CTTGTTAAAT
*
46061776 TTGCTCTTAATATTTTTGGACAAGGTACTTAGTTAAGCTTGTTAAATTTGCTC
1 TTGCTCTTAATATTTCTGGACAAGGTACTTAGTTAAGCTTGTTAAATTTGCTC
*
46061829 TTGCTCTTAATATTTCTGGACAAGTTACTTAGTTAAGCTTGTTAAATTTGCTC
1 TTGCTCTTAATATTTCTGGACAAGGTACTTAGTTAAGCTTGTTAAATTTGCTC
46061882 TT
1 TT
46061884 AATATTTCCG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.46
Consensus pattern (53 bp):
TTGCTCTTAATATTTCTGGACAAGGTACTTAGTTAAGCTTGTTAAATTTGCTC
Found at i:46061880 original size:47 final size:47
Alignment explanation
Indices: 46061763--46061911 Score: 208
Period size: 47 Copynumber: 3.0 Consensus size: 47
46061753 GTTGAATTTA
* *
46061763 AAGCTTGTTAAATTTGCTCTTAATATTTTTGGACAAGGTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
46061810 AAGCTTGTTAAATTTGCTCTTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
1 AAGCTTGTTAAA-----T-TTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
* *
46061863 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
46061910 AA
1 AA
46061912 AGACAATTTT
Statistics
Matches: 92, Mismatches: 4, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
47 46 0.50
48 1 0.01
52 1 0.01
53 44 0.48
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
Found at i:46062779 original size:45 final size:45
Alignment explanation
Indices: 46062715--46062889 Score: 200
Period size: 45 Copynumber: 4.0 Consensus size: 45
46062705 TATCGTACAG
* * * *
46062715 TACTATTCAGGCTTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCTGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
46062760 TACTATTCTGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
1 TACTATTCTGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* *
46062805 TACTGTT-TGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGA-A
1 TACTATTCT-GGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* * *
46062849 -A-TGATGTC-GGGCTTCGAGCCTAGCAGGCGA-AATGCCAGTGA
1 TACT-AT-TCTGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
46062890 ATGAATTCGA
Statistics
Matches: 117, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
42 12 0.10
43 22 0.19
44 3 0.03
45 80 0.68
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCTGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
Found at i:46063447 original size:16 final size:18
Alignment explanation
Indices: 46063416--46063448 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
46063406 AACTCGTCAC
46063416 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
46063434 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
46063449 AGCTTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:46065796 original size:25 final size:25
Alignment explanation
Indices: 46065740--46065847 Score: 175
Period size: 25 Copynumber: 4.4 Consensus size: 25
46065730 CTGGAGGCCT
46065740 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
46065764 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
46065789 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
*
46065814 AGCCCTTTTAATAAACTAGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
46065839 AGCCCTTTT
1 AGCCCTTTT
46065848 TGCACTTCCT
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 7 0.09
24 13 0.16
25 59 0.75
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:46065918 original size:20 final size:20
Alignment explanation
Indices: 46065895--46065941 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
46065885 TTATGACTAC
46065895 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
46065914 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
46065935 ATCATGT
1 ATCATGT
46065942 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:46066005 original size:25 final size:25
Alignment explanation
Indices: 46065977--46066024 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
46065967 ATAATTAAAC
* *
46065977 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAATAGTCATTTTTA
46066002 CCTAGGGGTAAAATAGTCATTTT
1 CCTAGGGGTAAAATAGTCATTTT
46066025 CATAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (25 bp):
CCTAGGGGTAAAATAGTCATTTTTA
Found at i:46073253 original size:19 final size:19
Alignment explanation
Indices: 46073231--46073269 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
46073221 ATAATGTCGG
46073231 TGAGATACTATTCGGGCCT
1 TGAGATACTATTCGGGCCT
46073250 TGAGATACTATTCGGGCCT
1 TGAGATACTATTCGGGCCT
46073269 T
1 T
46073270 CGAGCCTAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33
Consensus pattern (19 bp):
TGAGATACTATTCGGGCCT
Found at i:46075157 original size:21 final size:21
Alignment explanation
Indices: 46075131--46075180 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
46075121 TCTAGCAAGG
*
46075131 GCGTGTCCTAAAGTCACACGG
1 GCGTGTCCTAAAGTCACACGA
* *
46075152 GTGTGTCTTAAAGTCACACGA
1 GCGTGTCCTAAAGTCACACGA
46075173 GCGTGTCC
1 GCGTGTCC
46075181 CTTAGACTAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (21 bp):
GCGTGTCCTAAAGTCACACGA
Found at i:46075651 original size:22 final size:22
Alignment explanation
Indices: 46075626--46075668 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
46075616 TATATTATGT
*
46075626 ATATT-AATATGTTTGGAATTGA
1 ATATTGAATATGTCT-GAATTGA
46075648 ATATTGAATATGTCTGAATTG
1 ATATTGAATATGTCTGAATTG
46075669 TATAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (22 bp):
ATATTGAATATGTCTGAATTGA
Found at i:46076001 original size:25 final size:24
Alignment explanation
Indices: 46075965--46076016 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
46075955 CTCAAACACA
*
46075965 GCTCTTTATGAGCGTCTTGATATAG
1 GCTCTTTATGAGCGTCCTGATAT-G
*
46075990 GCTCTTCT-TGAGCTTCCTGATATG
1 GCTCTT-TATGAGCGTCCTGATATG
46076014 GCT
1 GCT
46076017 TGCTTGAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 4 0.17
25 19 0.79
26 1 0.04
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.40
Consensus pattern (24 bp):
GCTCTTTATGAGCGTCCTGATATG
Found at i:46081643 original size:46 final size:46
Alignment explanation
Indices: 46081574--46081705 Score: 178
Period size: 46 Copynumber: 2.9 Consensus size: 46
46081564 ATAATCTCAC
*
46081574 CCATAATGAACTTGGAACGCAACTCAACGAGCTT-GGGTG-TTCGCAT
1 CCATAATGAACTTGGAACGCAACTCAACGAG-TTCGGATGCTT-GCAT
* * *
46081620 CCATAATGAACTCGAAACACAACTCAACGAGTTCGGATGCTTGCAT
1 CCATAATGAACTTGGAACGCAACTCAACGAGTTCGGATGCTTGCAT
**
46081666 CCATGGTGAACTTGGAACGCAACTCAACGAGTTCGGATGC
1 CCATAATGAACTTGGAACGCAACTCAACGAGTTCGGATGC
46081706 CTCATAATTC
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
45 2 0.03
46 71 0.95
47 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (46 bp):
CCATAATGAACTTGGAACGCAACTCAACGAGTTCGGATGCTTGCAT
Found at i:46085952 original size:27 final size:27
Alignment explanation
Indices: 46085741--46085951 Score: 291
Period size: 27 Copynumber: 7.8 Consensus size: 27
46085731 CGAAGCTAAC
*
46085741 ATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
46085768 ATAGAATTACTC-TTTTAACCTCGATTT
1 ATAGAATTAC-CATTTTACCCTCGATTT
* *
46085795 ATAGAATTACCGTTTCACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
46085822 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
46085849 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* *
46085876 ACAGAATTACCATTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
46085903 ATAAAATTACCATTTTACCCTC-AGTTT
1 ATAGAATTACCATTTTACCCTCGA-TTT
* * * *
46085930 ACAAAATTATCGTTTTACCCTC
1 ATAGAATTACCATTTTACCCTC
46085952 AATTATGAAA
Statistics
Matches: 169, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
26 2 0.01
27 166 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
ATAGAATTACCATTTTACCCTCGATTT
Found at i:46086031 original size:54 final size:54
Alignment explanation
Indices: 46085954--46086137 Score: 228
Period size: 54 Copynumber: 3.4 Consensus size: 54
46085944 TTACCCTCAA
* **
46085954 TTATGAAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGT
1 TTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGT
* *
46086008 TTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCTCTAGT
1 TTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGT
* * * *
46086062 TTATGAAATTACCGAAATA-CCCTCAATTTGTAAAATTAACAAAATACCCCT-GAT
1 TTATAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAG-T
* * *
46086116 TTACAAAGTTACAAAAATACCC
1 TTATAAAATTACCAAAATACCC
46086138 TTGACTTTCT
Statistics
Matches: 111, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
53 5 0.05
54 104 0.94
55 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.30
Consensus pattern (54 bp):
TTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGT
Found at i:46086117 original size:27 final size:27
Alignment explanation
Indices: 46085959--46086137 Score: 202
Period size: 27 Copynumber: 6.6 Consensus size: 27
46085949 CTCAATTATG
**
46085959 AAATTACTGAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
46085986 AAATTACCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
46086013 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
46086040 AAATTACTAAAATACCTCTAGTTTATG
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
46086067 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AGTTTGTA
* *
46086094 AAATTAACAAAATACCCCT-GATT-TA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
46086119 CAAAGTTACAAAAATACCC
1 -AAA-TTACCAAAATACCC
46086138 TTGACTTTCT
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
25 2 0.02
26 8 0.06
27 114 0.89
28 4 0.03
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:46086188 original size:27 final size:27
Alignment explanation
Indices: 46086149--46086200 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
46086139 TGACTTTCTA
46086149 AAAATTATAGAAACACCATTGGTTTAC
1 AAAATTATAGAAACACCATTGGTTTAC
*
46086176 AAAATTACT-GAAATACCATTGGTTT
1 AAAATTA-TAGAAACACCATTGGTTT
46086201 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (27 bp):
AAAATTATAGAAACACCATTGGTTTAC
Found at i:46087030 original size:20 final size:20
Alignment explanation
Indices: 46086996--46087071 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
46086986 GATATGTAGG
46086996 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
46087013 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
*
46087034 GTATGATATGCAGATGATAT
1 GTATGATATGCACATGATAT
*
46087054 GTATGAAATGCACATGAT
1 GTATGATATGCACATGAT
46087072 GAATTCATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 41 0.79
21 2 0.04
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:46087150 original size:26 final size:26
Alignment explanation
Indices: 46087121--46087218 Score: 112
Period size: 26 Copynumber: 3.8 Consensus size: 26
46087111 GAGGAAGTGC
46087121 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTATTG
* **
46087147 AAAATGGCTTAT-CCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCT-AGTTTATTG
*
46087173 AAAAGAGCTTATGCTCC-AGTTTATTG
1 AAAAGGGCTTATGC-CCTAGTTTATTG
*
46087199 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCTAGTT
46087219 ATTAAAGAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
24 2 0.03
25 11 0.18
26 44 0.73
27 1 0.02
28 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCTAGTTTATTG
Found at i:46087421 original size:42 final size:42
Alignment explanation
Indices: 46087362--46087453 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
46087352 TAGTCTCCCC
*
46087362 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
46087404 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
46087446 ATATGGGC
1 AAATGGGC
46087454 CTGTGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:46087525 original size:30 final size:31
Alignment explanation
Indices: 46087477--46087547 Score: 135
Period size: 30 Copynumber: 2.3 Consensus size: 31
46087467 CGTTTACAAT
46087477 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46087508 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46087538 AAAGGCTTCG
1 AAAGGCTTCG
46087548 TTCCAGTAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 29 0.73
31 11 0.28
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:46090293 original size:43 final size:41
Alignment explanation
Indices: 46090218--46090341 Score: 115
Period size: 43 Copynumber: 3.0 Consensus size: 41
46090208 AGGATTTTGA
* * *
46090218 TATGTGCTCTCGTGTAAGACCACGTCTAGGACATTGGCATAG
1 TATGTGAT-TCGTGTAAGACCATGTCTGGGACATTGGCATAG
* * *
46090260 ATATGTGATTACGTGTAAGACCATGTTTGGGACATCT-GTATCG
1 -TATGTGATT-CGTGTAAGACCATGTCTGGGACAT-TGGCATAG
* * * *
46090303 TATTTGATTCGTGTAAGACCCTATCTGGGACAGTGGCAT
1 TATGTGATTCGTGTAAGACCATGTCTGGGACATTGGCAT
46090342 CGATTTACCG
Statistics
Matches: 66, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
40 1 0.02
41 23 0.35
42 9 0.14
43 32 0.48
44 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (41 bp):
TATGTGATTCGTGTAAGACCATGTCTGGGACATTGGCATAG
Found at i:46091135 original size:17 final size:18
Alignment explanation
Indices: 46091113--46091154 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
46091103 CATGTTTACA
46091113 TGGTTGAGTA-AATGA-TG
1 TGGTTGA-TATAATGATTG
*
46091130 TGGTTGATATATTGATTG
1 TGGTTGATATAATGATTG
46091148 TGGTTGA
1 TGGTTGA
46091155 CATATTCAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 11 0.50
18 9 0.41
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (18 bp):
TGGTTGATATAATGATTG
Found at i:46095580 original size:18 final size:17
Alignment explanation
Indices: 46095555--46095596 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
46095545 TAACATTAGC
* *
46095555 TTCTTTTATTTTTATTT
1 TTCTTTTATGTTTATGT
46095572 TTACTTTTATGTTTATGT
1 TT-CTTTTATGTTTATGT
46095590 TTCTTTT
1 TTCTTTT
46095597 TCTTCTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.76
Consensus pattern (17 bp):
TTCTTTTATGTTTATGT
Found at i:46095596 original size:24 final size:23
Alignment explanation
Indices: 46095558--46095621 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 23
46095548 CATTAGCTTC
*
46095558 TTTTATTTTTATTTTTACTT-TTATG
1 TTTTA-TTTTCTTTTT-CTTCTT-TG
46095583 -TTTATGTTTCTTTTTCTTCTTTG
1 TTTTAT-TTTCTTTTTCTTCTTTG
46095606 TTTCTATTTTCTTTTT
1 TTT-TATTTTCTTTTT
46095622 GATTCTCTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
23 6 0.18
24 25 0.74
25 3 0.09
ACGTcount: A:0.09, C:0.09, G:0.05, T:0.77
Consensus pattern (23 bp):
TTTTATTTTCTTTTTCTTCTTTG
Found at i:46095607 original size:17 final size:16
Alignment explanation
Indices: 46095587--46095632 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 16
46095577 TTTATGTTTA
46095587 TGTTTCTTTTTCTTCTT
1 TGTTTCTTTTTCTT-TT
46095604 TGTTTCTATTTTCTTTT
1 TGTTTCT-TTTTCTTTT
46095621 TGATTCTCTTTT
1 TG-TT-TCTTTT
46095633 ACTGTGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 11 0.42
18 12 0.46
19 3 0.12
ACGTcount: A:0.04, C:0.15, G:0.07, T:0.74
Consensus pattern (16 bp):
TGTTTCTTTTTCTTTT
Found at i:46096396 original size:103 final size:102
Alignment explanation
Indices: 46096256--46096500 Score: 273
Period size: 103 Copynumber: 2.4 Consensus size: 102
46096246 CACAGCTAAG
* * * *
46096256 AACACGGGTATGTGCCTAGGCCGTGTAACTCACTGTTTGTGGCACAA-GACCACACGGATAAGAA
1 AACACGGGTGTGT-CC-AGGCCGTGTAATTCATTGTTTGTGGCACAAGGA-AACACGGATAAGAA
46096320 CACGGG-GATGTGTCCAGGTCGTATGAGTCACACG-GCCAGA
63 CACGGGCG-TGTGTCCAGGTCGTATGAGTCACACGCG-CAGA
* ** *
46096360 AACACGGTGTGTGTCCAGGCCGTGTAATTCATTGTTTGTGGCACAAGGAAACACGGCTTGGGACA
1 AACACGG-GTGTGTCCAGGCCGTGTAATTCATTGTTTGTGGCACAAGGAAACACGGATAAGAACA
* * *
46096425 CGGGCGTGTGTCTAGGTCGTGTGAGTCCCACGCGCAGA
65 CGGGCGTGTGTCCAGGTCGTATGAGTCACACGCGCAGA
*
46096463 AACATGGGCATGTGTCCAGGCCGTGTAACTT-ATTGTTT
1 AACACGGG--TGTGTCCAGGCCGTGTAA-TTCATTGTTT
46096501 ATGCTTCGAA
Statistics
Matches: 122, Mismatches: 12, Indels: 14
0.82 0.08 0.09
Matches are distributed among these distances:
102 1 0.01
103 76 0.62
104 38 0.31
105 7 0.06
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (102 bp):
AACACGGGTGTGTCCAGGCCGTGTAATTCATTGTTTGTGGCACAAGGAAACACGGATAAGAACAC
GGGCGTGTGTCCAGGTCGTATGAGTCACACGCGCAGA
Found at i:46098162 original size:70 final size:66
Alignment explanation
Indices: 46098053--46098184 Score: 185
Period size: 70 Copynumber: 1.9 Consensus size: 66
46098043 ATAAACAATA
* * *
46098053 TAATGGTTTTGCTTTTAACTTAATGGATAAACATTTATCAAAATGATGTAGTTTTGCCTTTTATC
1 TAATGGTTTTGCTTTTAACTTAAAGGATAAACATTTATCAAAACGACGTAGTTTTGCCTTTTATC
46098118 T
66 T
46098119 TAATGGTTTTGACTTTTAACTTTACAAAAGG-TAAACATTTATCAAAACGACGTAGTTTTGCCTT
1 TAATGGTTTTG-CTTTTAAC-TT---AAAGGATAAACATTTATCAAAACGACGTAGTTTTGCCTT
46098183 TT
61 TT
46098185 CTTATTCAGA
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
66 11 0.19
67 8 0.14
68 2 0.03
70 33 0.57
71 4 0.07
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (66 bp):
TAATGGTTTTGCTTTTAACTTAAAGGATAAACATTTATCAAAACGACGTAGTTTTGCCTTTTATC
T
Found at i:46109031 original size:44 final size:44
Alignment explanation
Indices: 46108966--46109050 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
46108956 TTGATATCTC
* *
46108966 AAAGTCCATGGTTGTACCATGGAAATTAAGGAAGAATTGACCGA
1 AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGACCGA
* * *
46109010 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGAC
1 AAAGTCCATGGTT-ATAACATGGAAATTAAGGAAGAATTGAC
46109051 GGTTAAGGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGACCGA
Found at i:46109246 original size:44 final size:47
Alignment explanation
Indices: 46109184--46109302 Score: 199
Period size: 44 Copynumber: 2.6 Consensus size: 47
46109174 GCATTGGCAC
*
46109184 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
46109231 T-A-A-AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
46109275 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
46109303 CCAAGGCATG
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
44 42 0.62
45 2 0.03
46 2 0.03
47 22 0.32
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:46109486 original size:108 final size:108
Alignment explanation
Indices: 46109289--46109502 Score: 295
Period size: 108 Copynumber: 2.0 Consensus size: 108
46109279 ATAAGGATAT
**
46109289 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCTTGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * * * *
46109354 TTGTAAAGACATGGGATTGATGAGTTACTATAAGGAAAAGGTCC
66 ATGTAAAGACATGGCAATGATGAGTT-CAAAAAGGAAAAGGTCC
* * * *
46109398 CATGTAAGGCCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* *
46109462 ATGTCAAGACATGGCAATGGTGAGTTCAAAAAGGAAAAGGT
66 ATGTAAAGACATGGCAATGATGAGTTCAAAAAGGAAAAGGT
46109503 TCCTGAGTAA
Statistics
Matches: 92, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
107 13 0.14
108 44 0.48
109 35 0.38
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTAAAGACATGGCAATGATGAGTTCAAAAAGGAAAAGGTCC
Found at i:46109612 original size:16 final size:17
Alignment explanation
Indices: 46109591--46109623 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
46109581 CTTATTTAAT
46109591 ATTGAGATTGT-AAGTA
1 ATTGAGATTGTCAAGTA
46109607 ATTGAGATTGTCAAGTA
1 ATTGAGATTGTCAAGTA
46109624 CTAAGTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.36
Consensus pattern (17 bp):
ATTGAGATTGTCAAGTA
Found at i:46113011 original size:78 final size:78
Alignment explanation
Indices: 46112921--46113064 Score: 243
Period size: 78 Copynumber: 1.8 Consensus size: 78
46112911 CGGGATTTAT
* * ** *
46112921 CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAACCCAGATATTTTACCAGTACGAAGCCT
1 CCCGGATATAATACCAACACGAAGCCTGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCT
46112986 GCGGGTCTTTAAG
66 GCGGGTCTTTAAG
46112999 CCCGGATATAATACCAACACGAAGCCTGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCT
1 CCCGGATATAATACCAACACGAAGCCTGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCT
46113064 G
66 G
46113065 TCGGATTTAA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 61 1.00
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (78 bp):
CCCGGATATAATACCAACACGAAGCCTGCGGGATTTAACCCAGATATAATACCAGCACGAAGCCT
GCGGGTCTTTAAG
Found at i:46113021 original size:40 final size:38
Alignment explanation
Indices: 46112909--46113084 Score: 237
Period size: 38 Copynumber: 4.6 Consensus size: 38
46112899 GCACTAGGCT
* * *
46112909 TGCGGGATTTATCCCGGATATAATACCAGCATGAAGCC
1 TGCGGGATTTAACCCAGATATAATACCAGCACGAAGCC
** *
46112947 TGCGGGATTTAACCCAGATATTTTACCAGTACGAAGCC
1 TGCGGGATTTAACCCAGATATAATACCAGCACGAAGCC
* * *
46112985 TGCGGGTCTTTAAGCCCGGATATAATACCAACACGAAGCC
1 TGCGGG-ATTTAA-CCCAGATATAATACCAGCACGAAGCC
46113025 TGCGGGATTTAACCCAGATATAATACCAGCACGAAGCC
1 TGCGGGATTTAACCCAGATATAATACCAGCACGAAGCC
46113063 TGTC-GGATTTAACCCAGATATA
1 TG-CGGGATTTAACCCAGATATA
46113085 CATCGAATAT
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
38 82 0.68
39 11 0.09
40 27 0.22
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (38 bp):
TGCGGGATTTAACCCAGATATAATACCAGCACGAAGCC
Found at i:46117676 original size:17 final size:16
Alignment explanation
Indices: 46117650--46117681 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
46117640 CACGAAAAAG
46117650 TAAACTTAGTAAGCTA
1 TAAACTTAGTAAGCTA
46117666 TAAAGCTTAGTAAGCT
1 TAAA-CTTAGTAAGCT
46117682 CTTATAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (16 bp):
TAAACTTAGTAAGCTA
Found at i:46123576 original size:19 final size:20
Alignment explanation
Indices: 46123542--46123582 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
46123532 CTAGACAGGT
* *
46123542 AACTTAGGAAATTTTTAGAA
1 AACTTAGGAAAATTTTACAA
46123562 AACTTA-GAAAATTTTACAA
1 AACTTAGGAAAATTTTACAA
46123581 AA
1 AA
46123583 TATAGGGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32
Consensus pattern (20 bp):
AACTTAGGAAAATTTTACAA
Found at i:46127329 original size:11 final size:10
Alignment explanation
Indices: 46127309--46127338 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
46127299 TAATTTTAGG
46127309 TTTAGTTTTC
1 TTTAGTTTTC
46127319 TTTATGTTTTC
1 TTTA-GTTTTC
46127330 TTTAGTTTT
1 TTTAGTTTT
46127339 TCTCTGTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.73
Consensus pattern (10 bp):
TTTAGTTTTC
Found at i:46130704 original size:12 final size:12
Alignment explanation
Indices: 46130609--46130705 Score: 50
Period size: 12 Copynumber: 8.4 Consensus size: 12
46130599 CATTATTTTA
46130609 ATTTAATATTAA-
1 ATTTAAT-TTAAT
46130621 ATTTAATTTAAT
1 ATTTAATTTAAT
*
46130633 ACTT-ATCTTAAT
1 ATTTAAT-TTAAT
*
46130645 A-GT-ATTT--T
1 ATTTAATTTAAT
46130653 A-TTAATTTAAT
1 ATTTAATTTAAT
* *
46130664 ATTCAA-GTAAT
1 ATTTAATTTAAT
46130675 AATCTTAATATTAA-
1 -AT-TTAAT-TTAAT
46130689 ATTTAATTTAAT
1 ATTTAATTTAAT
46130701 ATTTA
1 ATTTA
46130706 TCTTGAAAAC
Statistics
Matches: 67, Mismatches: 7, Indels: 22
0.70 0.07 0.23
Matches are distributed among these distances:
8 3 0.04
9 4 0.06
10 2 0.03
11 19 0.28
12 31 0.46
13 5 0.07
15 3 0.04
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (12 bp):
ATTTAATTTAAT
Found at i:46138285 original size:40 final size:40
Alignment explanation
Indices: 46138141--46138268 Score: 168
Period size: 40 Copynumber: 3.2 Consensus size: 40
46138131 AGCCTTCAAG
* * * *
46138141 GCATTAGTGGCACTTTTTCAAGAAACGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAA-AAACACCGCTATAGATCGA
* *
46138182 G-ATTTAGCTGCGCTTTTTGAAAAACACTGCTATAGATCGA
1 GCA-TTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
*
46138222 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
46138262 GCATTAG
1 GCATTAG
46138269 TGGTGTTTTT
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
40 60 0.79
41 16 0.21
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
Found at i:46138690 original size:7 final size:7
Alignment explanation
Indices: 46138669--46138869 Score: 82
Period size: 7 Copynumber: 27.4 Consensus size: 7
46138659 TTAATTATCA
*
46138669 TTATAGT
1 TTATGGT
*
46138676 TTAAGGT
1 TTATGGT
46138683 TTATGGT
1 TTATGGT
*
46138690 TTAGGGT
1 TTATGGT
46138697 TTATGGT
1 TTATGGT
**
46138704 TTATTAT
1 TTATGGT
**
46138711 AAATTAATATT
1 ---TT-ATGGT
*
46138722 TTAAGGT
1 TTATGGT
*
46138729 TTATGGA
1 TTATGGT
46138736 TTATGGGT
1 TTAT-GGT
* *
46138744 TTAAGAT
1 TTATGGT
*
46138751 TTAAGGT
1 TTATGGT
*
46138758 TTAGGAGT
1 TTATG-GT
46138766 TTATGGT
1 TTATGGT
46138773 TTATGAGT
1 TTATG-GT
* **
46138781 TAATATT
1 TTATGGT
*
46138788 TTAAGGT
1 TTATGGT
*
46138795 TTATGGA
1 TTATGGT
46138802 TTATGGAT
1 TTATGG-T
*
46138810 TTA-GGAG
1 TTATGG-T
46138817 TTATGGT
1 TTATGGT
46138824 TTATGGT
1 TTATGGT
*
46138831 TTAAAGGT
1 TT-ATGGT
*
46138839 TGA-GGT
1 TTATGGT
*
46138845 TTAAGGTT
1 TTATGG-T
*
46138853 TTAGGGT
1 TTATGGT
46138860 TTATGGT
1 TTATGGT
46138867 TTA
1 TTA
46138870 GAGGTTAAGA
Statistics
Matches: 145, Mismatches: 37, Indels: 24
0.70 0.18 0.12
Matches are distributed among these distances:
6 5 0.03
7 101 0.70
8 34 0.23
10 2 0.01
11 3 0.02
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:46138691 original size:14 final size:14
Alignment explanation
Indices: 46138669--46138869 Score: 72
Period size: 15 Copynumber: 14.2 Consensus size: 14
46138659 TTAATTATCA
*
46138669 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
46138683 TTATGGTTTAGGGT
1 TTATGGTTTAAGGT
46138697 TTATGGTTT-A---
1 TTATGGTTTAAGGT
*** **
46138707 TTATAAATTAATATT
1 TTATGGTTTAA-GGT
* * *
46138722 TTAAGGTTTATGGA
1 TTATGGTTTAAGGT
*
46138736 TTATGGGTTTAAGAT
1 TTAT-GGTTTAAGGT
* *
46138751 TTAAGGTTTAGGAGT
1 TTATGGTTTAAG-GT
*
46138766 TTATGGTTTATGAGT
1 TTATGGTTTAAG-GT
* **
46138781 TAATATTTTAAGGT
1 TTATGGTTTAAGGT
* *
46138795 TTATGGATTATGGAT
1 TTATGGTTTAAGG-T
* *
46138810 TTA-GGAGTTATGGT
1 TTATGG-TTTAAGGT
46138824 TTATGGTTTAAAGGT
1 TTATGGTTT-AAGGT
*
46138839 TGA-GGTTTAAGGTT
1 TTATGGTTTAAGG-T
* *
46138853 TTAGGGTTTATGGT
1 TTATGGTTTAAGGT
46138867 TTA
1 TTA
46138870 GAGGTTAAGA
Statistics
Matches: 136, Mismatches: 38, Indels: 26
0.68 0.19 0.13
Matches are distributed among these distances:
10 6 0.04
11 1 0.01
13 4 0.03
14 61 0.45
15 64 0.47
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:46138783 original size:29 final size:29
Alignment explanation
Indices: 46138722--46138783 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
46138712 AATTAATATT
*
46138722 TTAAGGTTTATGGATTATGGGTTTAAGAT
1 TTAAGGTTTATGGATTATGGGTTTAAGAG
*
46138751 TTAAGGTTTA-GGAGTTTAT-GGTTTATGAG
1 TTAAGGTTTATGGA--TTATGGGTTTAAGAG
46138780 TTAA
1 TTAA
46138784 TATTTTAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 3 0.10
29 22 0.76
30 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (29 bp):
TTAAGGTTTATGGATTATGGGTTTAAGAG
Found at i:46138812 original size:22 final size:22
Alignment explanation
Indices: 46138721--46138865 Score: 79
Period size: 22 Copynumber: 6.6 Consensus size: 22
46138711 AAATTAATAT
*
46138721 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGGATTATGGA
* * *
46138743 TTTAAGATTTAAGGTTTA-GGA
1 TTTAAGGTTTATGGATTATGGA
*
46138764 GTTTATGGTTTAT-GAGTTAAT--A
1 -TTTAAGGTTTATGGA-TT-ATGGA
46138786 TTTTAAGGTTTATGGATTATGGA
1 -TTTAAGGTTTATGGATTATGGA
* *
46138809 TTT-AGGAGTTATGGTTTATGG-
1 TTTAAGG-TTTATGGATTATGGA
* * * *
46138830 TTTAAAGGTTGA-GGTTTAAGGT
1 TTT-AAGGTTTATGGATTATGGA
*
46138852 TTTAGGGTTTATGG
1 TTTAAGGTTTATGG
46138866 TTTAGAGGTT
Statistics
Matches: 94, Mismatches: 17, Indels: 24
0.70 0.13 0.18
Matches are distributed among these distances:
21 25 0.27
22 62 0.66
23 7 0.07
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (22 bp):
TTTAAGGTTTATGGATTATGGA
Found at i:46138896 original size:36 final size:35
Alignment explanation
Indices: 46138816--46138896 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 35
46138806 GGATTTAGGA
*
46138816 GTTAT-GGTTTATGGTTTAAAGGTTGAGGTTTAAG
1 GTTATGGGTTTATGGTTTAAAGGTTAAGGTTTAAG
* *
46138850 GTTTTAGGGTTTATGGTTTAGAGGTTAAGAG-TTAAGG
1 GTTAT-GGGTTTATGGTTTAAAGGTTAAG-GTTTAA-G
46138887 GTTATGGGTT
1 GTTATGGGTT
46138897 AGGGGTTAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
34 4 0.10
36 29 0.74
37 6 0.15
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.43
Consensus pattern (35 bp):
GTTATGGGTTTATGGTTTAAAGGTTAAGGTTTAAG
Found at i:46139106 original size:16 final size:16
Alignment explanation
Indices: 46139053--46139106 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
46139043 ATATTAAATA
*
46139053 ATTTCAAATTTTAAAG
1 ATTTCAAATTTTCAAG
46139069 ATTTCAAATTTTC-A-
1 ATTTCAAATTTTCAAG
46139083 A--T--AATTTTCAAG
1 ATTTCAAATTTTCAAG
46139095 ATTTCAAATTTT
1 ATTTCAAATTTT
46139107 ATCTAATTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 1 0.03
12 2 0.06
14 2 0.06
15 1 0.03
16 18 0.58
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (16 bp):
ATTTCAAATTTTCAAG
Found at i:46143042 original size:9 final size:9
Alignment explanation
Indices: 46143016--46143082 Score: 71
Period size: 9 Copynumber: 7.4 Consensus size: 9
46143006 GTTTAAATTT
*
46143016 CATAACTTA
1 CATAACTCA
*
46143025 CAAAACTCA
1 CATAACTCA
*
46143034 CATACCTCA
1 CATAACTCA
*
46143043 CATAACTTA
1 CATAACTCA
46143052 CATAACTCA
1 CATAACTCA
*
46143061 CATAACTTA
1 CATAACTCA
* *
46143070 GATAACTTA
1 CATAACTCA
46143079 CATA
1 CATA
46143083 TATAATACAT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.45, C:0.27, G:0.01, T:0.27
Consensus pattern (9 bp):
CATAACTCA
Found at i:46143058 original size:27 final size:27
Alignment explanation
Indices: 46143016--46143082 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
46143006 GTTTAAATTT
* *
46143016 CATAACTTACAAAACTCACATACCTCA
1 CATAACTTACATAACTCACATAACTCA
*
46143043 CATAACTTACATAACTCACATAACTTA
1 CATAACTTACATAACTCACATAACTCA
*
46143070 GATAACTTACATA
1 CATAACTTACATA
46143083 TATAATACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.45, C:0.27, G:0.01, T:0.27
Consensus pattern (27 bp):
CATAACTTACATAACTCACATAACTCA
Found at i:46149052 original size:43 final size:43
Alignment explanation
Indices: 46148997--46149261 Score: 277
Period size: 43 Copynumber: 6.2 Consensus size: 43
46148987 AGAACGTGAC
* * * *
46148997 CTTTAGCAGCGTTTTCCAAAAAAGCGCCACTAAATGTCAAGTT
1 CTTTAGCGGCGTTTTCCCAAAAAGCGCCGCTAAAAGTCAAGTT
* *
46149040 CTTTAACGGCGTTTTCCCAAAAAGCGCCGCT-AAAGATCACGTT
1 CTTTAGCGGCGTTTTCCCAAAAAGCGCCGCTAAAAG-TCAAGTT
* * * *
46149083 CTTTAGCGACGTTTGCCCAAAAAGCGTCGCTAAATGTCAAGTT
1 CTTTAGCGGCGTTTTCCCAAAAAGCGCCGCTAAAAGTCAAGTT
* * *
46149126 CTTTAGCGGCGTTTGCCCAAAAAGTGCCGCTAAAGGTCACA-TT
1 CTTTAGCGGCGTTTTCCCAAAAAGCGCCGCTAAAAGTCA-AGTT
** * * *
46149169 CTTTAGCGGTATTTTTCCC-AAATGCGCCGCTAAAAATCACGTT
1 CTTTAGCGG-CGTTTTCCCAAAAAGCGCCGCTAAAAGTCAAGTT
* ** *
46149212 CTTTAGCGGCGTTTT-TCTGAAAGCGCCGCTAAAAGTCATGTT
1 CTTTAGCGGCGTTTTCCCAAAAAGCGCCGCTAAAAGTCAAGTT
46149254 CTTTAGCG
1 CTTTAGCG
46149262 ACTTTTTTTT
Statistics
Matches: 185, Mismatches: 31, Indels: 13
0.81 0.14 0.06
Matches are distributed among these distances:
41 1 0.01
42 35 0.19
43 139 0.75
44 10 0.05
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (43 bp):
CTTTAGCGGCGTTTTCCCAAAAAGCGCCGCTAAAAGTCAAGTT
Found at i:46149073 original size:86 final size:85
Alignment explanation
Indices: 46148973--46149160 Score: 245
Period size: 86 Copynumber: 2.2 Consensus size: 85
46148963 CATTTGAGAT
* *
46148973 AAAATCGCCGCTAAAGA-ACGTGACCTTTAGC-AGCGTTTTCCAAAAAAGCGCCACTAAATGTCA
1 AAAAGCGCCGCTAAAGACACGT--CCTTTAGCGA-CGTTTGCCAAAAAAGCGCCACTAAATGTCA
*
46149036 AGTTCTTTAACGGCGTTTTCCCA
63 AGTTCTTTAACGGCGTTTGCCCA
* * * *
46149059 AAAAGCGCCGCTAAAGATCACGTTCTTTAGCGACGTTTGCCCAAAAAGCGTCGCTAAATGTCAAG
1 AAAAGCGCCGCTAAAGA-CACGTCCTTTAGCGACGTTTGCCAAAAAAGCGCCACTAAATGTCAAG
*
46149124 TTCTTTAGCGGCGTTTGCCCA
65 TTCTTTAACGGCGTTTGCCCA
*
46149145 AAAAGTGCCGCTAAAG
1 AAAAGCGCCGCTAAAG
46149161 GTCACATTCT
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
86 85 0.94
87 1 0.01
88 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (85 bp):
AAAAGCGCCGCTAAAGACACGTCCTTTAGCGACGTTTGCCAAAAAAGCGCCACTAAATGTCAAGT
TCTTTAACGGCGTTTGCCCA
Found at i:46149159 original size:129 final size:128
Alignment explanation
Indices: 46148997--46149261 Score: 318
Period size: 129 Copynumber: 2.1 Consensus size: 128
46148987 AGAACGTGAC
* * * *
46148997 CTTTAGCAGCGTTTTCCAAAAAAGCGCCACTAAATGTCA-AGTTCTTTAACGG-CGTTTTCCCAA
1 CTTTAGCGGCGTTTGCCAAAAAAGCGCCACTAAAGGTCACA-TTCTTTAACGGTAGTTTTCCC-A
* * *
46149060 AAAGCGCCGCTAAAGATCACGTTCTTTAGCGACGTTTGCCCAAAAAGCGTCGCTAAATGTCAAGT
64 AAAGCGCCGCTAAAAATCACGTTCTTTAGCGACGTTT-CCCAAAAAGCGCCGCTAAAAGTCAAGT
46149125 T
128 T
* * * * *
46149126 CTTTAGCGGCGTTTGCCCAAAAAGTGCCGCTAAAGGTCACATTCTTTAGCGGTATTTTTCCCAAA
1 CTTTAGCGGCGTTTGCCAAAAAAGCGCCACTAAAGGTCACATTCTTTAACGGTAGTTTTCCCAAA
* * ** ** *
46149191 TGCGCCGCTAAAAATCACGTTCTTTAGCGGCGTTTTTCTGAAAGCGCCGCTAAAAGTCATGTT
66 AGCGCCGCTAAAAATCACGTTCTTTAGCGACGTTTCCCAAAAAGCGCCGCTAAAAGTCAAGTT
46149254 CTTTAGCG
1 CTTTAGCG
46149262 ACTTTTTTTT
Statistics
Matches: 115, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
128 29 0.25
129 78 0.68
130 8 0.07
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (128 bp):
CTTTAGCGGCGTTTGCCAAAAAAGCGCCACTAAAGGTCACATTCTTTAACGGTAGTTTTCCCAAA
AGCGCCGCTAAAAATCACGTTCTTTAGCGACGTTTCCCAAAAAGCGCCGCTAAAAGTCAAGTT
Found at i:46149764 original size:30 final size:30
Alignment explanation
Indices: 46149729--46149789 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
46149719 AGACATACAA
46149729 AAAACAAACAAACAATTTGTTAATTTTTTC
1 AAAACAAACAAACAATTTGTTAATTTTTTC
46149759 AAAACAAACAAACAATTTGTTAATTTTTTC
1 AAAACAAACAAACAATTTGTTAATTTTTTC
46149789 A
1 A
46149790 TTGCTTCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAACAAACAAACAATTTGTTAATTTTTTC
Found at i:46152881 original size:25 final size:24
Alignment explanation
Indices: 46152812--46152893 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
46152802 TTGGAGACCT
* * *
46152812 AGCCTCTTTTAAT-AACTGGAGAAA
1 AGCC-CTTTTGATAAACTGGGGCAA
46152836 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
* *
46152860 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
46152885 AGCCCTTTT
1 AGCCCTTTT
46152894 AGCACTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
23 7 0.14
24 22 0.43
25 22 0.43
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:46153315 original size:27 final size:27
Alignment explanation
Indices: 46153104--46153311 Score: 317
Period size: 27 Copynumber: 7.7 Consensus size: 27
46153094 ATGGTAGTTT
* * * *
46153104 TACCCCACAAGGGTATCTCGATAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
46153131 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
46153158 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
46153185 TACCCTACAGGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* *
46153212 TACCCTACAAGGGTATTTCGGTAGTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
46153239 TACCCTATAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
46153266 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
**
46153293 TACCCTACAATGGTATTTC
1 TACCCTACAGGGGTATTTC
46153312 AGTATTTTAC
Statistics
Matches: 167, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 167 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATTC
Found at i:46153443 original size:81 final size:81
Alignment explanation
Indices: 46153356--46153535 Score: 270
Period size: 81 Copynumber: 2.2 Consensus size: 81
46153346 CACAAATTAG
* * * * *
46153356 GGGTATTTTGGTAATTTTACAAACCATGGGTATTTTGGTAATTTTATAAGCCAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAAATTTACAAACCAGGGGTATTTTGG
46153421 TAATTTTATAAACCAA
66 TAATTTTATAAACCAA
* * *
46153437 GGGTATTTTAGTAAATTTACAAACCAAGGGTATTTTGGTAAATTTGCAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAAATTTACAAACCAGGGGTATTTTGG
*
46153502 TAATTTTGTAAACCAA
66 TAATTTTATAAACCAA
*
46153518 GGGTATTTCAGTAATTTT
1 GGGTATTTTAGTAATTTT
46153536 TTAAATTGAG
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 88 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAAATTTACAAACCAGGGGTATTTTGG
TAATTTTATAAACCAA
Found at i:46153540 original size:27 final size:27
Alignment explanation
Indices: 46153356--46153540 Score: 226
Period size: 27 Copynumber: 6.9 Consensus size: 27
46153346 CACAAATTAG
* *
46153356 GGGTATTTTGGTAATTTTACAAACCAT
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
46153383 GGGTATTTTGGTAATTTTATAAGCCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
46153410 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
46153437 GGGTATTTTAGTAAATTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* ** * *
46153464 GGGTATTTTGGTAAATTTGCAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
46153491 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
** *
46153518 GGGTATTTCAGTAATTTTTTAAA
1 GGGTATTTTGGTAATTTTATAAA
46153541 TTGAGGGTAA
Statistics
Matches: 139, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:46153576 original size:81 final size:80
Alignment explanation
Indices: 46153410--46153811 Score: 241
Period size: 81 Copynumber: 5.0 Consensus size: 80
46153400 TATAAGCCAG
* * * * * ****
46153410 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAAATTTACAAACCAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTTAGTAATTTTATAAATCGAGGGTAAAACGG
* * *
46153475 TAAATTTGCAAACT-A
65 TAATTTTGTAAATTGA
* *
46153490 GGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTTTAAATTGAGGGTAAAACG
1 -GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT-AGTAATTTTATAAATCGAGGGTAAAACG
46153555 GTAATTTTGTAAATTGA
64 GTAATTTTGTAAATTGA
*** * * * * ** * *
46153572 GGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGG
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGT-ATTTAGTAATTTTATAAATCGAGGGTAAAACGG
* *
46153637 TAATTCTGTAAATCGA
65 TAATTTTGTAAATTGA
**** * * * * ** * * * * *
46153653 GGGTAAAACGATAATTTTATAAATCGAGGGTAAAATGGCAATTCTATAAATCGAGCGTAAAATGG
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGT-ATTTAGTAATTTTATAAATCGAGGGTAAAACGG
* * *
46153718 TAATTCTATAAATCGA
65 TAATTTTGTAAATTGA
*** * * ** * *
46153734 GGGTAAAATGGTAATTTTGTAAATCGAGGGT-TAAACGATAATTCTATAAATCGAGGGTAAAATG
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTA-G-TAATTTTATAAATCGAGGGTAAAACG
46153798 GTAATTTTGTAAAT
64 GTAATTTTGTAAAT
46153812 CAAGGGTTAA
Statistics
Matches: 268, Mismatches: 48, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.00
80 4 0.01
81 260 0.97
82 3 0.01
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTAGTAATTTTATAAATCGAGGGTAAAACGGT
AATTTTGTAAATTGA
Found at i:46153812 original size:27 final size:27
Alignment explanation
Indices: 46153528--46153846 Score: 386
Period size: 27 Copynumber: 11.8 Consensus size: 27
46153518 GGGTATTTCA
* * * *
46153528 GTAATTTTTTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
46153555 GTAATTTTGTAAATTGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
46153582 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
46153609 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
46153636 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
46153663 ATAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
46153690 GCAATTCTATAAATCGAGCGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
46153717 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
46153744 GTAATTTTGTAAATCGAGGGTTAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
46153771 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * *
46153798 GTAATTTTGTAAATCAAGGGTTAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
46153825 ATAATTCTATAAATCGGGGGTA
1 GTAATTCTATAAATCGAGGGTA
46153847 CTTTGATAAT
Statistics
Matches: 252, Mismatches: 40, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 252 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:46153854 original size:27 final size:26
Alignment explanation
Indices: 46153325--46153999 Score: 147
Period size: 27 Copynumber: 25.0 Consensus size: 26
46153315 ATTTTACGAT
* * *
46153325 TCGAGGGTTTTTCGATAATTTCACAAA
1 TCGAGGGTATTT-GATAATTTTATAAA
* * *
46153352 T-TAGGGGTATTTTGGTAATTTTACAAA
1 TCGA-GGGTA-TTTGATAATTTTATAAA
* *
46153379 -CCATGGGTATTTTGGTAATTTTAT-AA
1 TCGA-GGGTA-TTTGATAATTTTATAAA
* * *
46153405 GCCAGGGGTATTTTGGTAATTTTATAAA
1 TCGA-GGGTA-TTTGATAATTTTATAAA
* * * * *
46153433 CCAAGGGTATTTTAGTAAATTTACAAA
1 TCGAGGGTATTTGA-TAATTTTATAAA
* * * * **
46153460 CCAAGGGTATTTTGGTAAATTTGCAAA
1 TCGAGGGTA-TTTGATAATTTTATAAA
* * *
46153487 -CTAGGGGTATTTTGGTAATTTTGTAAA
1 TCGA-GGGTA-TTTGATAATTTTATAAA
* * * *
46153514 CCAAGGGTATTTCAGTAATTTTTTAAA
1 TCGAGGGTATTTGA-TAATTTTATAAA
* *** * *
46153541 TTGAGGGTAAAACGGTAATTTTGTAAA
1 TCGAGGGT-ATTTGATAATTTTATAAA
* ** * *
46153568 TTGAGGGTAAAAT-AGTAATTCTGTAAA
1 TCGAGGGT-ATTTGA-TAATTTTATAAA
** * *
46153595 TCGAGGGTAAAATGGTAATTCTATAAA
1 TCGAGGGT-ATTTGATAATTTTATAAA
*** * * *
46153622 TCGAGGGTAAAACGGTAATTCTGTAAA
1 TCGAGGGT-ATTTGATAATTTTATAAA
***
46153649 TCGAGGGTAAAACGATAATTTTATAAA
1 TCGAGGGT-ATTTGATAATTTTATAAA
** ** *
46153676 TCGAGGGTAAAATGGCAATTCTATAAA
1 TCGAGGGT-ATTTGATAATTTTATAAA
* ** * *
46153703 TCGAGCGTAAAATGGTAATTCTATAAA
1 TCGAGGGT-ATTTGATAATTTTATAAA
** * *
46153730 TCGAGGGTAAAATGGTAATTTTGTAAA
1 TCGAGGGT-ATTTGATAATTTTATAAA
*** *
46153757 TCGAGGGTTAAACGATAATTCTATAAA
1 TCGAGGG-TATTTGATAATTTTATAAA
** * *
46153784 TCGAGGGTAAAATGGTAATTTTGTAAA
1 TCGAGGGT-ATTTGATAATTTTATAAA
* *** *
46153811 TCAAGGGTTAAACGATAATTCTATAAA
1 TCGAGGG-TATTTGATAATTTTATAAA
* * *
46153838 TCGGGGGTACTTTGATAATTTTACAAG
1 TCGAGGGTA-TTTGATAATTTTATAAA
* *
46153865 TCGATGGTATTTCAGTAATTTTAT-AA
1 TCGAGGGTATTTGA-TAATTTTATAAA
* *
46153891 TCGACGGTATTTCGGTAATTTTATAAA
1 TCGAGGGTATTT-GATAATTTTATAAA
* * * * *
46153918 CCGGGGGTACTTTGGTAATTTTACAAG
1 TCGAGGGTA-TTTGATAATTTTATAAA
** * * *
46153945 TTAAAGGTATTTTAGTAATTTTACAAA
1 TCGAGGGTATTTGA-TAATTTTATAAA
*
46153972 TCGAGGGTATTTCGGTAATTTTAGTAAA
1 TCGAGGGTATTT-GATAATTTTA-TAAA
46154000 CTAAAGTATT
Statistics
Matches: 523, Mismatches: 101, Indels: 47
0.78 0.15 0.07
Matches are distributed among these distances:
26 42 0.08
27 460 0.88
28 21 0.04
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (26 bp):
TCGAGGGTATTTGATAATTTTATAAA
Found at i:46153859 original size:54 final size:54
Alignment explanation
Indices: 46153528--46153846 Score: 431
Period size: 54 Copynumber: 5.9 Consensus size: 54
46153518 GGGTATTTCA
* * * * * * * *
46153528 GTAATTTTTTAAATTGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
* * *
46153582 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
*
46153636 GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
* * * * *
46153690 GCAATTCTATAAATCGAGCGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
* *
46153744 GTAATTTTGTAAATCGAGGGTTAAACGATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
* * * *
46153798 GTAATTTTGTAAATCAAGGGTTAAACGATAATTCTATAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
46153847 CTTTGATAAT
Statistics
Matches: 237, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 237 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
Found at i:46153923 original size:80 final size:81
Alignment explanation
Indices: 46153826--46154000 Score: 253
Period size: 80 Copynumber: 2.2 Consensus size: 81
46153816 GGTTAAACGA
* * * * *
46153826 TAATTCTATAAATCGGGGGTACTTTGATAATTTTACAAGTCGATGGTATTTCAGTAATTTTA-TA
1 TAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCAAAGGTATTTCAGTAATTTTACAA
46153890 ATCGACGGTATTTCGG
66 ATCGACGGTATTTCGG
* * *
46153906 TAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAAGTTAAAGGTATTTTAGTAATTTTACAA
1 TAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCAAAGGTATTTCAGTAATTTTACAA
*
46153971 ATCGAGGGTATTTCGG
66 ATCGACGGTATTTCGG
46153987 TAATTTTAGTAAAC
1 TAATTTTA-TAAAC
46154001 TAAAGTATTC
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
80 55 0.65
81 24 0.29
82 5 0.06
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
TAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCAAAGGTATTTCAGTAATTTTACAA
ATCGACGGTATTTCGG
Found at i:46155947 original size:27 final size:27
Alignment explanation
Indices: 46155917--46156094 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
46155907 ATATTGAGCC
* *
46155917 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
46155944 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
46155971 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
46155999 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
46156026 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
46156053 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
46156080 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46156095 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46156029 original size:55 final size:54
Alignment explanation
Indices: 46155917--46156094 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
46155907 ATATTGAGCC
* * * * *
46155917 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
46155971 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
46156026 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
46156080 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46156095 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:46178511 original size:13 final size:13
Alignment explanation
Indices: 46178493--46178517 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46178483 TAATGGTATA
46178493 TTGAATCCATGAC
1 TTGAATCCATGAC
46178506 TTGAATCCATGA
1 TTGAATCCATGA
46178518 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:46179098 original size:27 final size:27
Alignment explanation
Indices: 46179067--46179244 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46179057 TAAATTGTAC
46179067 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
46179094 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46179120 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
46179148 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
46179176 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46179203 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
46179230 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46179245 GACTCAAAAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:46179181 original size:82 final size:81
Alignment explanation
Indices: 46179068--46179223 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46179058 AAATTGTACA
* *
46179068 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
46179132 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
46179149 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
46179214 TGCGAGTTGA
65 TGCGAATTGA
46179224 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46179235 original size:82 final size:81
Alignment explanation
Indices: 46179064--46179244 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
46179054 GATTAAATTG
* *
46179064 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
46179129 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
46179145 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
46179209 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
46179227 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
46179245 GACTCAAAAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:46197778 original size:49 final size:49
Alignment explanation
Indices: 46197693--46197936 Score: 276
Period size: 49 Copynumber: 4.9 Consensus size: 49
46197683 TAGCCAAAGC
* * *
46197693 TATCTGGAACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
46197742 TAT-TCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
46197792 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * * * * *
46197843 TATCGGGTACGCATAGTATCTTGCAATTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
46197892 AATCTGGTACACATAGTAG-CTGCACTTAGTACTACACACGGGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
46197937 TCACAATAGA
Statistics
Matches: 162, Mismatches: 28, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
48 23 0.14
49 56 0.35
50 47 0.29
51 36 0.22
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:46197915 original size:99 final size:99
Alignment explanation
Indices: 46197694--46197936 Score: 294
Period size: 99 Copynumber: 2.5 Consensus size: 99
46197684 AGCCAAAGCT
* * * *
46197694 ATCTGGAACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATTCGGTACACGTAGT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACATAGT
* * *
46197759 AGCCTGCACTTAGTACTACACACGTGACCTAACC
66 AGCCTGCAATTAGTACTACACACGCGACCTAACA
* * * *
46197793 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTA-TCGGGTACGCAT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATTC-GGTACACAT
* * * *
46197857 AGTATCTTGCAATTAGTACTACACATGCGACC-AATA
63 AGTAGCCTGCAATTAGTACTACACACGCGACCTAACA
*
46197893 ATCTGGTACACATAGTAG-CTGCACTTAGTACTACACACGGGACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
46197937 TCACAATAGA
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
98 1 0.01
99 61 0.50
100 23 0.19
101 37 0.30
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACATAGT
AGCCTGCAATTAGTACTACACACGCGACCTAACA
Found at i:46199228 original size:17 final size:18
Alignment explanation
Indices: 46199195--46199227 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
46199185 TTCCTCTCTT
46199195 TTTTTCCACTTTCTTTTC
1 TTTTTCCACTTTCTTTTC
46199213 TTTTT-CACTTT-TTTT
1 TTTTTCCACTTTCTTTT
46199228 TGTTCTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 6 0.40
18 5 0.33
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTTCCACTTTCTTTTC
Found at i:46202888 original size:27 final size:27
Alignment explanation
Indices: 46202858--46203034 Score: 156
Period size: 27 Copynumber: 6.5 Consensus size: 27
46202848 AAATTGTACA
*
46202858 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
46202885 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * * **
46202912 GCACTAGGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
*
46202939 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
* * * *
46202967 GCACTAAGTGTGCGATTTTATTACGTA
1 GCACTAAGTGTGCGATTTGACTATGTT
* * * * *
46202994 GCACTAAGTGTGTGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTT
*
46203021 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
46203035 GGCTCAACAT
Statistics
Matches: 123, Mismatches: 26, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:46202925 original size:54 final size:55
Alignment explanation
Indices: 46202857--46203005 Score: 151
Period size: 55 Copynumber: 2.7 Consensus size: 55
46202847 TAAATTGTAC
*
46202857 AGCACTAAGG-GTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AATGAATATG-
1 AGCACT-AGGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
* * ** ** *
46202910 ATGCACTAGGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAGGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
* * * *
46202966 AGCACTAAGTGTGCGATTTTATTACGTAGCACTAAGTGTG
1 AGCACTAGGTGTGCGATTTGACTATGTAGCACTAAGTGTG
46203006 TGAGTTGATT
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
53 4 0.05
54 34 0.44
55 38 0.49
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAGGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
Found at i:46203025 original size:82 final size:81
Alignment explanation
Indices: 46202854--46203034 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 81
46202844 GATTAAATTG
* * * *
46202854 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAG
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
46202919 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
46202935 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTTATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
46202999 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
46203017 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
46203035 GGCTCAACAT
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 17 0.21
82 63 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Done.