Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 149 of 295
Found at i:46610180 original size:40 final size:40
Alignment explanation
Indices: 46610091--46610336 Score: 337
Period size: 40 Copynumber: 6.3 Consensus size: 40
46610081 CCTTCAGGGT
* *
46610091 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTC-GGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGAC
* *
46610129 TTAGCCTGGTTATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* *
46610169 TTAGCCCGGTTATAGTAACTTGCACAATTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
46610209 TTGGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
46610249 TTAGCCCGGATATAGTAACTCG-ACAAATGCCTT--GGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* *
46610286 -TA-CCCGGATATAGTAACTCGCACAAATGCCTTCGGAAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
46610324 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
46610337 CAATCCGAAT
Statistics
Matches: 187, Mismatches: 13, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
35 18 0.10
36 13 0.07
37 4 0.02
38 8 0.04
39 37 0.20
40 107 0.57
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:46621991 original size:18 final size:19
Alignment explanation
Indices: 46621954--46621992 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
46621944 TAGGATTTGA
* *
46621954 TACTGTATATTTGTTACTG
1 TACTGAATATTTGATACTG
46621973 TACTGAATA-TTGATACTG
1 TACTGAATATTTGATACTG
46621991 TA
1 TA
46621993 ATGGGCCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.46
Consensus pattern (19 bp):
TACTGAATATTTGATACTG
Found at i:46639875 original size:8 final size:8
Alignment explanation
Indices: 46639864--46639892 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
46639854 TTATTTTATT
46639864 TTATTTCA
1 TTATTTCA
46639872 TTATTTCA
1 TTATTTCA
46639880 TTATTTCA
1 TTATTTCA
46639888 TTATT
1 TTATT
46639893 ATTTGTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (8 bp):
TTATTTCA
Found at i:46640106 original size:18 final size:17
Alignment explanation
Indices: 46640080--46640167 Score: 63
Period size: 18 Copynumber: 4.9 Consensus size: 17
46640070 GAGTTATTTC
*
46640080 TTTTCTTTTTCATTTTAT
1 TTTTATTTTT-ATTTTAT
**
46640098 TTTTATTTTTAGTTGAAT
1 TTTTATTTTTA-TTTTAT
*
46640116 CTTTATTTTTATCTTTAT
1 TTTTATTTTTAT-TTTAT
46640134 TTTT-TTTTGT-TTTTAGT
1 TTTTATTTT-TATTTTA-T
46640151 TGCTTTATTTTTATTTT
1 T--TTTATTTTTATTTT
46640168 CTTAGACTTA
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
16 4 0.07
17 9 0.16
18 30 0.55
19 4 0.07
20 8 0.15
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.75
Consensus pattern (17 bp):
TTTTATTTTTATTTTAT
Found at i:46640107 original size:6 final size:6
Alignment explanation
Indices: 46640092--46640167 Score: 57
Period size: 6 Copynumber: 12.5 Consensus size: 6
46640082 TTCTTTTTCA
* ** * *
46640092 TTTTAT TTTTAT TTTTAG TTGAAT CTTTAT TTTTAT CTTTA- TTTT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
*
46640138 TTTTGT TTTTAGT TGCTTTAT TTTTAT TTT
1 TTTTAT TTTTA-T T--TTTAT TTTTAT TTT
46640168 CTTAGACTTA
Statistics
Matches: 54, Mismatches: 11, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
5 7 0.13
6 39 0.72
7 2 0.04
8 2 0.04
9 4 0.07
ACGTcount: A:0.14, C:0.04, G:0.07, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:46640219 original size:5 final size:6
Alignment explanation
Indices: 46640204--46640228 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
46640194 TTGAACTATG
46640204 TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA T
46640229 GGTTGGTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:46642040 original size:19 final size:19
Alignment explanation
Indices: 46641999--46642042 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
46641989 TTTCAGAAGC
**
46641999 CACATGGCCTGGACATTTA
1 CACATGGCCTGGACACATA
* *
46642018 CACATGGTCTGGACACATG
1 CACATGGCCTGGACACATA
46642037 CACATG
1 CACATG
46642043 TGCCAGCTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (19 bp):
CACATGGCCTGGACACATA
Found at i:46645023 original size:22 final size:22
Alignment explanation
Indices: 46644996--46645066 Score: 133
Period size: 22 Copynumber: 3.2 Consensus size: 22
46644986 AAAATGCCCA
46644996 TGTGGAGGGAGGCACACAGCCG
1 TGTGGAGGGAGGCACACAGCCG
46645018 TGTGGAGGGAGGCACACAGCCG
1 TGTGGAGGGAGGCACACAGCCG
*
46645040 TGTGGAGGGAGGCACACAGCCA
1 TGTGGAGGGAGGCACACAGCCG
46645062 TGTGG
1 TGTGG
46645067 CAGAGGCACA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.23, C:0.21, G:0.45, T:0.11
Consensus pattern (22 bp):
TGTGGAGGGAGGCACACAGCCG
Found at i:46646403 original size:16 final size:15
Alignment explanation
Indices: 46646382--46646412 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
46646372 CTTATGTCTT
46646382 ATTATATTATATATTA
1 ATTATATTATA-ATTA
46646398 ATTATATTATAATTA
1 ATTATATTATAATTA
46646413 TGCGTCATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTATAATTA
Found at i:46648017 original size:40 final size:40
Alignment explanation
Indices: 46647945--46648121 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
46647935 ACCGAAGTAT
*
46647945 CTTCGGGAT-TTAG-CCGGATATAACAACGCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* **
46647984 CTTTGGGTCTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
46648024 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * * *
46648064 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
46648104 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
46648122 TTATCATCCG
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 11 0.10
40 103 0.90
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:46655162 original size:40 final size:40
Alignment explanation
Indices: 46655104--46655243 Score: 169
Period size: 40 Copynumber: 3.5 Consensus size: 40
46655094 GCACAAGGCA
* * * * * *
46655104 TTCGGGTCTTAACTCGGATATGGTCACTAGCATAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCC
46655144 TTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCC
* *
46655184 TTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAA-GCC
1 TTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAATGCC
46655224 TTCGGGACTTAG-CCGGATAT
1 TTCGGGACTTAGCCCGGATAT
46655244 CATTGGAGTA
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
39 10 0.11
40 66 0.75
41 12 0.14
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCC
Found at i:46666693 original size:39 final size:40
Alignment explanation
Indices: 46666593--46666777 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
46666583 TTGAATGATG
* * *
46666593 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
46666632 ATCCTGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
46666673 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46666712 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46666751 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46666778 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.30
40 76 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:46666733 original size:79 final size:81
Alignment explanation
Indices: 46666593--46666777 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
46666583 TTGAATGATG
* * *
46666593 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCTGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
46666657 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
46666672 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
46666734 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
46666752 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46666778 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:46666799 original size:79 final size:79
Alignment explanation
Indices: 46666646--46666810 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
46666636 TGACTAAGAT
* * **
46666646 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
46666711 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
46666725 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
46666788 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
46666804 CCGAAGG
1 CCGAAGG
46666811 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:46672726 original size:27 final size:27
Alignment explanation
Indices: 46672696--46672873 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
46672686 ATATTGAGTC
* * * *
46672696 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
46672723 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
46672750 CGCACACTTAGTGCTACATAGTCAATCT
1 CGCACACTTAGTGCTACATAGTCAA-AT
** * *
46672778 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
46672805 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
46672832 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46672859 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46672874 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:46672835 original size:82 final size:81
Alignment explanation
Indices: 46672717--46672872 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
46672707 TGCTATATAA
* * *
46672717 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAATCTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAA-ATCGCA
46672782 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
46672799 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
46672863 CACTTAGTGC
65 CACTTAGTGC
46672873 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46680837 original size:27 final size:27
Alignment explanation
Indices: 46680807--46680984 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
46680797 ATATTGAGTC
* * * *
46680807 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
46680834 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
46680861 CGCACACTTAGTGCTACATAGTCAATCT
1 CGCACACTTAGTGCTACATAGTCAA-AT
** * *
46680889 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
46680916 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
46680943 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46680970 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46680985 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:46680946 original size:82 final size:81
Alignment explanation
Indices: 46680828--46680983 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
46680818 TGCTATATAA
* * *
46680828 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAATCTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAA-ATCGCA
46680893 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
46680910 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
46680974 CACTTAGTGC
65 CACTTAGTGC
46680984 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46686103 original size:79 final size:81
Alignment explanation
Indices: 46685971--46686151 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 81
46685961 ATGATGTCCA
* *
46685971 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
*
46686035 CGAGATACTA-ATTCCG
66 CGAGATACTATA-ACCG
* * * **
46686051 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTGT
* *
46686113 GTGAGTTACTATAACCG
65 GCGAGATACTATAACCG
*
46686130 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
46686152 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 56 0.65
80 29 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
CGAGATACTATAACCG
Found at i:46686165 original size:40 final size:40
Alignment explanation
Indices: 46685971--46686151 Score: 192
Period size: 40 Copynumber: 4.5 Consensus size: 40
46685961 ATGATGTCCA
* * * *
46685971 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCG
* * *
46686011 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCG
46686051 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
* * *
46686090 GGTTAAGTCCCGAAGGCAATTGTGTGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
*
46686130 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
46686152 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
Found at i:46686173 original size:79 final size:79
Alignment explanation
Indices: 46686020--46686184 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
46686010 GGACTAAGAT
* * **
46686020 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
46686085 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
46686099 CCGAAGGCAATTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
46686162 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
46686178 CCGAAGG
1 CCGAAGG
46686185 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:46691151 original size:23 final size:23
Alignment explanation
Indices: 46691120--46691244 Score: 112
Period size: 23 Copynumber: 5.4 Consensus size: 23
46691110 GCTGATGAAT
46691120 AGTAAGCTCTATTGAGTTGAAAC
1 AGTAAGCTCTATTGAGTTGAAAC
* * *
46691143 GGTAAGCTCTATTGAGCTGATAC
1 AGTAAGCTCTATTGAGTTGAAAC
* * *
46691166 AGCAAGCTCT-TTCAAGCTG-AAC
1 AGTAAGCTCTATT-GAGTTGAAAC
*
46691188 AGTAAGCTC-ATACGAGTTGAAAC
1 AGTAAGCTCTAT-TGAGTTGAAAC
* * *
46691211 GGTAAGCTCCAATGAGTTGAAAAC
1 AGTAAGCTCTATTGAGTTG-AAAC
46691235 AGTAAGCTCT
1 AGTAAGCTCT
46691245 TACGAGTTGA
Statistics
Matches: 80, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
22 17 0.21
23 50 0.62
24 13 0.16
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (23 bp):
AGTAAGCTCTATTGAGTTGAAAC
Found at i:46691239 original size:24 final size:24
Alignment explanation
Indices: 46691185--46691276 Score: 84
Period size: 24 Copynumber: 3.8 Consensus size: 24
46691175 TTTCAAGCTG
46691185 AACAGTAAGCT-CATACGAGTTGA
1 AACAGTAAGCTCCATACGAGTTGA
* *
46691208 AACGGTAAGCTCCA-ATGAGTTGAA
1 AACAGTAAGCTCCATACGAGTTG-A
*
46691232 AACAGTAAGCT-CTTACGAGTTGA
1 AACAGTAAGCTCCATACGAGTTGA
*
46691255 TATATCGGTAAGCT-CATACGAG
1 -A-A-CAGTAAGCTCCATACGAG
46691277 CTGGTGAGTC
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
23 19 0.34
24 21 0.38
25 1 0.02
26 15 0.27
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (24 bp):
AACAGTAAGCTCCATACGAGTTGA
Found at i:46694761 original size:47 final size:47
Alignment explanation
Indices: 46694693--46694815 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
46694683 ATCCATAAGT
* *
46694693 GAACTCGGACTCAACTCAACGAGTTCGGATGGCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
46694740 GAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
46694787 GAACTCGGACTCAACTCAGCGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
46694816 ACTCAACCAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:46700400 original size:47 final size:47
Alignment explanation
Indices: 46700337--46700448 Score: 152
Period size: 47 Copynumber: 2.4 Consensus size: 47
46700327 ATCCATAAGT
* * ** *
46700337 GAACTTGGACTCAACTCAATGATTTCGAATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
* *
46700384 GAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
*
46700431 GAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCA
46700449 GAGAGTTCGA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
Found at i:46709427 original size:19 final size:19
Alignment explanation
Indices: 46709403--46709439 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
46709393 GATATTGATA
46709403 TATCTCACATAAATTTCTT
1 TATCTCACATAAATTTCTT
*
46709422 TATCTCATATAAATTTCT
1 TATCTCACATAAATTTCT
46709440 CTTACCCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.00, T:0.49
Consensus pattern (19 bp):
TATCTCACATAAATTTCTT
Found at i:46715961 original size:21 final size:21
Alignment explanation
Indices: 46715935--46715976 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
46715925 TCAAGAAAAA
46715935 CATCTCGATGTCGCAACACAG
1 CATCTCGATGTCGCAACACAG
*
46715956 CATCTCTATGTCGCAACACAG
1 CATCTCGATGTCGCAACACAG
46715977 AAAATAGTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (21 bp):
CATCTCGATGTCGCAACACAG
Found at i:46725317 original size:53 final size:52
Alignment explanation
Indices: 46725136--46725366 Score: 220
Period size: 55 Copynumber: 4.4 Consensus size: 52
46725126 AGGGTTTAAA
* *
46725136 GATACCATGTAAGACCATTCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCTAAGGCAAG
* * * *
46725191 GATACCATGTAAGACCATGTCAAGACGTGACATTGATAAGTTACTATAAGGCAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C--TAAGGC-AAG
* * *
46725247 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCGTAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGCAAG
* * * *
46725299 GATACCATGTAAGGCCATGTCGAGACATGGCAATGGTAAGTT-TCAA---AAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCT-AAGGCAAG
*
46725348 GATACCACGTAAGACCATG
1 GATACCATGTAAGACCATG
46725367 AAAAGTCATG
Statistics
Matches: 147, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
49 20 0.14
51 1 0.01
52 8 0.05
53 41 0.28
54 8 0.05
55 65 0.44
56 4 0.03
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.22
Consensus pattern (52 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGCAAG
Found at i:46725339 original size:108 final size:110
Alignment explanation
Indices: 46725140--46725340 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
46725130 TTTAAAGATA
*
46725140 CCATGTAAGACCATTCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
46725205 CCATGTCAAGACGTGACATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
*
46725250 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCGTAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* * * *
46725312 GCCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGACAATGATAAGTT
46725341 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:46728084 original size:22 final size:22
Alignment explanation
Indices: 46728040--46728086 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
46728030 AACGGGATAA
*
46728040 CACAGAGCCGTAAACAGGACAG
1 CACAGAGCCGTAAACACGACAG
*
46728062 CACATAGCCGTAAACATCG-CAG
1 CACAGAGCCGTAAACA-CGACAG
46728084 CAC
1 CAC
46728087 CGCTGCCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.38, C:0.32, G:0.21, T:0.09
Consensus pattern (22 bp):
CACAGAGCCGTAAACACGACAG
Found at i:46728317 original size:22 final size:23
Alignment explanation
Indices: 46728284--46728342 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
46728274 ATACGTTTGT
46728284 GCACACAA-CCATAAT-TAGGTTG
1 GCACA-AAGCCATAATGTAGGTTG
*
46728306 GCACAGAGCCAT-ATGTAGGTTG
1 GCACAAAGCCATAATGTAGGTTG
*
46728328 GCGCAAAGCCATAAT
1 GCACAAAGCCATAAT
46728343 CAGAATAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 26 0.84
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (23 bp):
GCACAAAGCCATAATGTAGGTTG
Found at i:46728689 original size:41 final size:41
Alignment explanation
Indices: 46728488--46728687 Score: 292
Period size: 41 Copynumber: 4.9 Consensus size: 41
46728478 AAAAGTCACT
* * * *
46728488 GGTGGATCCACAGTCGTCAAGCAACCACGTGATCCTTAGTC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATC
* *
46728529 GGTGGATCCACGATCATCAAGCAACCATGCGATCCTTAATC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATC
* * *
46728570 AGTGGATCCATGATCGTCAAGCAACCATGCGATCCTTAATC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATC
* *
46728611 GATGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATC
*
46728652 GGTGGATCCACGGTCGTCAAGCAACCATGTGATCCT
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCT
46728688 CATTTTCTTC
Statistics
Matches: 143, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 143 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (41 bp):
GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATC
Found at i:46728980 original size:27 final size:27
Alignment explanation
Indices: 46728928--46729351 Score: 327
Period size: 27 Copynumber: 15.7 Consensus size: 27
46728918 TTTCACCATA
* * * *
46728928 CAAGGCTATTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
46728955 CAAGGGTATTTTGGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
46728982 CAATGATATTTCT-GTAATTTCTGA-AAGT
1 CAAGGGTATTT-TGGTAATTT-T-ACAAAT
* * **
46729010 CAATGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
46729037 -GGGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* * *
46729063 CAAGAGTATTTCGGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
46729090 CAGGGGTATTCTGATAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * **
46729117 TAAAGGTATTTCGGTAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** **
46729144 CAAGGGTATTTCAGTAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
46729171 CAAGGGTATTTTGTTAATTTCATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
46729198 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
46729225 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
46729252 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
46729278 CTAGGGGTATTTTGGTAATTTTGCTAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ** *
46729306 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
46729333 CAAGAGTATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
46729352 CCACCCTATA
Statistics
Matches: 327, Mismatches: 60, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
26 20 0.06
27 285 0.87
28 22 0.07
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:46729370 original size:27 final size:27
Alignment explanation
Indices: 46729340--46729397 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
46729330 AACCAAGAGT
*
46729340 ATTTTAGTAATTCCACCCTATAGGGGC
1 ATTTTAGTAATTCCACCCTACAGGGGC
* *
46729367 ATTTTAGTAATTCTACCCTACAGGGGT
1 ATTTTAGTAATTCCACCCTACAGGGGC
46729394 ATTT
1 ATTT
46729398 CGGTAATACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (27 bp):
ATTTTAGTAATTCCACCCTACAGGGGC
Found at i:46729377 original size:81 final size:81
Alignment explanation
Indices: 46729228--46729378 Score: 187
Period size: 81 Copynumber: 1.9 Consensus size: 81
46729218 TACAAACCAG
* * * ** * *
46729228 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGAGTATTTTAGTAATTCCACAAACTAGGGGCATTTTAG
46729293 TAATTTTGCTAATCGA
66 TAATTTTGCTAATCGA
** **
46729309 GGGTATTTTGGTAATTTTGTAAACCAAGAGTATTTTAGTAATTCCACCCTA-TAGGGGCATTTTA
1 GGGTATTTTGGTAATTTTACAAACCAAGAGTATTTTAGTAATTCCA-CAAACTAGGGGCATTTTA
46729373 GTAATT
65 GTAATT
46729379 CTACCCTACA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
81 56 0.97
82 2 0.03
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGAGTATTTTAGTAATTCCACAAACTAGGGGCATTTTAG
TAATTTTGCTAATCGA
Found at i:46729403 original size:27 final size:27
Alignment explanation
Indices: 46729340--46729413 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
46729330 AACCAAGAGT
* * *
46729340 ATTTTAGTAATTCCACCCTATAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
46729367 ATTTTAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* * *
46729394 ATTTCGGTAATACTAGCCTA
1 ATTTCAGTAATTCTACCCTA
46729414 TAGATATGAG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:46730901 original size:17 final size:17
Alignment explanation
Indices: 46730863--46730909 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
46730853 CGTTGGTTTA
* *
46730863 TTAAAA-GTCATTATCT
1 TTAAAACGTTATTACCT
46730879 TGTAAAACGTTATTACCT
1 T-TAAAACGTTATTACCT
*
46730897 TTAAAACTTTATT
1 TTAAAACGTTATT
46730910 TGCTGCGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 1 0.04
17 16 0.62
18 9 0.35
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (17 bp):
TTAAAACGTTATTACCT
Found at i:46731312 original size:28 final size:28
Alignment explanation
Indices: 46731272--46731337 Score: 132
Period size: 28 Copynumber: 2.4 Consensus size: 28
46731262 AGACAGAATT
46731272 CAGAATCAGTCTGGGCCGAAGCCCATTA
1 CAGAATCAGTCTGGGCCGAAGCCCATTA
46731300 CAGAATCAGTCTGGGCCGAAGCCCATTA
1 CAGAATCAGTCTGGGCCGAAGCCCATTA
46731328 CAGAATCAGT
1 CAGAATCAGT
46731338 ATCATATGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.30, C:0.27, G:0.24, T:0.18
Consensus pattern (28 bp):
CAGAATCAGTCTGGGCCGAAGCCCATTA
Found at i:46731983 original size:41 final size:41
Alignment explanation
Indices: 46731924--46732046 Score: 174
Period size: 41 Copynumber: 3.0 Consensus size: 41
46731914 TAAAATCCAC
*
46731924 CGGTGGATCCACGATCGTCAAGCAACCATGCGATTCTTAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATTCTCAAT
* * * * *
46731965 TGGTGGATCCATGGTCGTCAAGCAACCATGCAACTCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATTCTCAAT
* *
46732006 CGGTGGATCCACAATCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATTCTCAAT
46732047 TTCTTTCTCC
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATGCGATTCTCAAT
Found at i:46732337 original size:27 final size:27
Alignment explanation
Indices: 46732307--46732680 Score: 212
Period size: 27 Copynumber: 13.9 Consensus size: 27
46732297 GTAAATCTAA
46732307 AAACTAAGGGTATTTTGGTAATTTTGC
1 AAACTAAGGGTATTTTGGTAATTTTGC
* * *
46732334 AAACCAATGGTATTTCT-ATAATTTTTG-
1 AAACTAAGGGTATTT-TGGTAA-TTTTGC
* * * *
46732361 AAAGTCAAGGATATTTCT-ATAATTTTGT
1 AAACT-AAGGGTATTT-TGGTAATTTTGC
* * * *
46732389 AAATTAGGGGTAATTCT-GTAATTTTCC
1 AAACTAAGGGT-ATTTTGGTAATTTTGC
* *
46732416 AAA-TCAAGGGTATTTCGATAATTTT-C
1 AAACT-AAGGGTATTTTGGTAATTTTGC
* * *
46732442 AAAATTAAGGGTATTCTGGTAATTTTAC
1 -AAACTAAGGGTATTTTGGTAATTTTGC
** * ** *
46732470 AAACCCAGGG-ACTCCGGTAATTTT-A
1 AAACTAAGGGTATTTTGGTAATTTTGC
* ** * *
46732495 AAAGTCGTGGGTATTTCGGTAATTTTAC
1 AAACT-AAGGGTATTTTGGTAATTTTGC
*
46732523 -AAGTCAAGGGTATTTTGGTAA-TTT-C
1 AAACT-AAGGGTATTTTGGTAATTTTGC
* * *
46732548 ATAAATCAGGGGTATTTTGGTAATTTTAC
1 A-AACT-AAGGGTATTTTGGTAATTTTGC
* *
46732577 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACTAAGGGTATTTTGGTAATTTTGC
* *
46732604 AAACCAGGGGTATTTTGGTAATTTTGC
1 AAACTAAGGGTATTTTGGTAATTTTGC
* * *
46732631 TAATTAAGGGTATTTTGGTAATTTTGT
1 AAACTAAGGGTATTTTGGTAATTTTGC
* *
46732658 AAACCAAGGGTATTTTAGTAATT
1 AAACTAAGGGTATTTTGGTAATT
46732681 CTACCCTATA
Statistics
Matches: 277, Mismatches: 53, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
25 4 0.01
26 23 0.08
27 214 0.77
28 34 0.12
29 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
AAACTAAGGGTATTTTGGTAATTTTGC
Found at i:46732437 original size:54 final size:54
Alignment explanation
Indices: 46732365--46732660 Score: 260
Period size: 54 Copynumber: 5.5 Consensus size: 54
46732355 TTTTTGAAAG
* ** * *
46732365 TCAAGGATATTTCTATAATTTTGTAAATTAGGGGTAATTCT-GTAATTTTCCAAA
1 TCAAGGGTATTTCGGTAATTTTATAAATTAGGGGT-ATTCTGGTAATTTTACAAA
* *
46732419 TCAAGGGTATTTCGATAATTTTCA-AAATTAAGGGTATTCTGGTAATTTTACAAA
1 TCAAGGGTATTTCGGTAATTTT-ATAAATTAGGGGTATTCTGGTAATTTTACAAA
* * * * * * *
46732473 CCCAGGG-ACTCCGGTAATTTTA-AAAGTCGTGGGTATT-TCGGTAATTTTACAAG
1 TCAAGGGTATTTCGGTAATTTTATAAATTAG-GGGTATTCT-GGTAATTTTACAAA
* * * *
46732526 TCAAGGGTATTTTGGTAATTTCATAAATCAGGGGTATTTTGGTAATTTTACAAA
1 TCAAGGGTATTTCGGTAATTTTATAAATTAGGGGTATTCTGGTAATTTTACAAA
* * * ** * * *
46732580 CCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCTAA
1 TCAAGGGTATTTCGGTAATTTTATAAATTAGGGGTATTCTGGTAATTTTACAAA
* * *
46732634 TTAAGGGTATTTTGGTAATTTTGTAAA
1 TCAAGGGTATTTCGGTAATTTTATAAA
46732661 CCAAGGGTAT
Statistics
Matches: 201, Mismatches: 34, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
52 6 0.03
53 41 0.20
54 149 0.74
55 5 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
TCAAGGGTATTTCGGTAATTTTATAAATTAGGGGTATTCTGGTAATTTTACAAA
Found at i:46732599 original size:81 final size:81
Alignment explanation
Indices: 46732314--46732680 Score: 275
Period size: 81 Copynumber: 4.5 Consensus size: 81
46732304 TAAAAACTAA
* * * ** *
46732314 GGGTATTTTGGTAATTTTGCAAACCAATGGTATTTCT-ATAATTTTTGAAAGTCAAGGATATTTC
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTT-TGGTAATTTTACAAA-TCAAGGGTATTT-
* ** *
46732378 T-ATAATTTTGTAAATTAG
63 TGGTAATTTCATAAATCAG
* * * * * * *
46732396 GGGTAATTCT-GTAATTTTCCAAATCAAGGGTATTTCGATAATTTT-CAAAATTAAGGGTATTCT
1 GGGT-ATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC-AAATCAAGGGTATTTT
* * *
46732459 GGTAATTTTACAAACCCA-
64 GGTAATTTCATAAA-TCAG
* ** * ** * *
46732477 GGG-ACTCCGGTAATTTTA-AAAGTCGTGGGTATTTCGGTAATTTTACAAGTCAAGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAA-CCAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTG
46732540 GTAATTTCATAAATCAG
65 GTAATTTCATAAATCAG
* *
46732557 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGG
* *
46732622 TAATTTTGC-T-AATTAA
66 TAA-TTT-CATAAATCAG
** *
46732638 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATT
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATT
46732681 CTACCCTATA
Statistics
Matches: 231, Mismatches: 41, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
79 8 0.03
80 56 0.24
81 117 0.51
82 45 0.19
83 5 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGG
TAATTTCATAAATCAG
Found at i:46732662 original size:54 final size:53
Alignment explanation
Indices: 46732312--46732680 Score: 250
Period size: 54 Copynumber: 6.8 Consensus size: 53
46732302 TCTAAAAACT
** ** *
46732312 AAGGGTATTTTGGTAATTTTGCAAACCAATGGTATTTCT-ATAATTTTTGA-AAGTC
1 AAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTT-TGGTAA-TTTT-ACAA-TC
* * * ** * *
46732367 AAGGATATTTCT-ATAATTTTGTAAATTAGGGGTAATTCT-GTAATTTTCCAAATC
1 AAGGGTATTT-TGGTAATTTTATAAACCAGGGGT-ATTTTGGTAATTTTAC-AATC
* * ** * * *
46732421 AAGGGTATTTCGATAATTTTCA-AAATTAAGGGTATTCTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTT-ATAAACCAGGGGTATTTTGGTAATTTTAC-AATC
* * ** * *
46732475 CAGGG-ACTCCGGTAATTTTA-AAAGTC-GTGGGTATTTCGGTAATTTTACAAGTC
1 AAGGGTATTTTGGTAATTTTATAAA-CCAG-GGGTATTTTGGTAATTTTACAA-TC
* * *
46732528 AAGGGTATTTTGGTAATTTCATAAATCAGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTAC-AATC
* * *
46732582 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCTAATT
1 AAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTAC-AATC
* * *
46732636 AAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATT
1 AAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATT
46732681 CTACCCTATA
Statistics
Matches: 257, Mismatches: 43, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
52 6 0.02
53 40 0.16
54 171 0.67
55 36 0.14
56 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (53 bp):
AAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACAATC
Found at i:46732706 original size:81 final size:81
Alignment explanation
Indices: 46732557--46732707 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
46732547 CATAAATCAG
* * * **
46732557 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTCTACAAACCAGGGGCATTTCAG
46732622 TAATTTTGCTAATTAA
66 TAATTTTGCTAATTAA
** ** *
46732638 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTCTACCCTA-TAGGGGCATTTCA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTCTA-CAAACCAGGGGCATTTCA
46732702 GTAATT
65 GTAATT
46732708 CTACCCTACA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 57 0.97
82 2 0.03
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTCTACAAACCAGGGGCATTTCAG
TAATTTTGCTAATTAA
Found at i:46732726 original size:27 final size:27
Alignment explanation
Indices: 46732662--46732726 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
46732652 TTTTGTAAAC
*
46732662 CAAGGGTATTTTAGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* * *
46732689 TAGGGGCATTTCAGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
*
46732716 CAAGCGTATTT
1 CAAGGGTATTT
46732727 AGGTAATACT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTCTACCCTA
Found at i:46732732 original size:27 final size:26
Alignment explanation
Indices: 46732662--46732742 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 26
46732652 TTTTGTAAAC
46732662 CAAGGGTATTTTAGTAATTCTACCCTA
1 CAAGGGTA-TTTAGTAATTCTACCCTA
* * *
46732689 TAGGGGCATTTCAGTAATTCTACCCTA
1 CAAGGGTATTT-AGTAATTCTACCCTA
* * *
46732716 CAAGCGTATTTAGGTAATACTAGCCTA
1 CAAGGGTATTTA-GTAATTCTACCCTA
46732743 TAAATATGAG
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
26 4 0.09
27 39 0.91
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (26 bp):
CAAGGGTATTTAGTAATTCTACCCTA
Found at i:46735439 original size:22 final size:22
Alignment explanation
Indices: 46735411--46735456 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
46735401 ACGCCGTAGT
* *
46735411 CAGGACAACACATAGCCTTAAA
1 CAGGACAACAAATAGCCGTAAA
*
46735433 CAGGACAGCAAATAGCCGTAAA
1 CAGGACAACAAATAGCCGTAAA
46735455 CA
1 CA
46735457 TCGTAACAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.46, C:0.26, G:0.17, T:0.11
Consensus pattern (22 bp):
CAGGACAACAAATAGCCGTAAA
Found at i:46735987 original size:41 final size:41
Alignment explanation
Indices: 46735822--46735987 Score: 242
Period size: 41 Copynumber: 4.0 Consensus size: 41
46735812 CTTAAAAGCC
* *
46735822 ATCGGTGGATCCACGGTCGCCAAGCAACCATGCGATCCTTA
1 ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
* * *
46735863 ATCGGTTGATCCACGGTCATCAAGAAACCATGCGATCCTCA
1 ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
* * *
46735904 ATCAGTGGATCCATGGTCGTCAAGCAACCATGCGATCTTCA
1 ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
* *
46735945 ATCGGTGGATCCACGATCGTCAAGCAACCATACGATCCTCA
1 ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
46735986 AT
1 AT
46735988 TTCTTCCTCC
Statistics
Matches: 109, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 109 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (41 bp):
ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
Found at i:46736277 original size:27 final size:27
Alignment explanation
Indices: 46736247--46736559 Score: 156
Period size: 27 Copynumber: 11.6 Consensus size: 27
46736237 GGTAAATCTA
*
46736247 CAAACCAAGGGTATTTCGGTAATTTTG
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * **
46736274 CAAACCAATGGTATTT-TTTAAAATTTTG
1 CAAATCAAGGGTATTTCGGT--AATTTTG
* *
46736302 -AAAGTCAAGAGTATTTCTGTAATTTTG
1 CAAA-TCAAGGGTATTTCGGTAATTTTG
* * ** *
46736329 TAAATCAGGGGTATTTTTGTAATTTTC
1 CAAATCAAGGGTATTTCGGTAATTTTG
* * *** *
46736356 CAAATTAAAGGTATTTCAAAAATTTTC
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46736383 CAAATC-AGAGGTATTTTGGTAATTTTA
1 CAAATCAAG-GGTATTTCGGTAATTTTG
* * * *
46736410 AAAATCAATGG-ATTTCAGTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46736436 CAAGTCGAA-GGTATTTTGGTAATTTTAG
1 CAAATC-AAGGGTATTTCGGTAATTTT-G
* * ** *
46736464 -AAATCAGGGGTAATTCCTTAATTTTA
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46736490 TAAAT-AAGGGGTATTTTGGTAATTTTG
1 CAAATCAA-GGGTATTTCGGTAATTTTG
* * * *
46736517 TAAACCAAGGGTA-TTCAGTAATTTTT
1 CAAATCAAGGGTATTTCGGTAATTTTG
* *
46736543 TAAACCAAGGGTATTTC
1 CAAATCAAGGGTATTTC
46736560 AATAATTCTA
Statistics
Matches: 219, Mismatches: 52, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
26 46 0.21
27 149 0.68
28 22 0.10
29 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGGTAATTTTG
Found at i:46736370 original size:54 final size:54
Alignment explanation
Indices: 46736233--46736541 Score: 198
Period size: 54 Copynumber: 5.7 Consensus size: 54
46736223 TACAAGGGTG
* * * * * * * *
46736233 TTTTGGTAAATCTACAAACCAAGGGTATTTCGGTAATTTTGCAAACCA-ATGGTA
1 TTTTGGTAATTTTAAAAATCAAAGGTATTTCAGTAATTTTACAAATCAGA-GGTA
* * * * ** *
46736287 TTTT-TTAAAATTTTGAAAGTC-AAGAGTATTTCTGTAATTTTGTAAATCAGGGGTA
1 TTTTGGT--AATTTTAAAAATCAAAG-GTATTTCAGTAATTTTACAAATCAGAGGTA
* ** * ** *
46736342 TTTTTGTAATTTTCCAAATTAAAGGTATTTCAAAAATTTTCCAAATCAGAGGTA
1 TTTTGGTAATTTTAAAAATCAAAGGTATTTCAGTAATTTTACAAATCAGAGGTA
* *
46736396 TTTTGGTAATTTTAAAAATCAATGG-ATTTCAGTAATTTTACAAGTC-GAAGGTA
1 TTTTGGTAATTTTAAAAATCAAAGGTATTTCAGTAATTTTACAAATCAG-AGGTA
* ** * ** * * *
46736449 TTTTGGTAATTTTAGAAATCAGGGGTAATTCCTTAATTTTATAAATAAGGGGTA
1 TTTTGGTAATTTTAAAAATCAAAGGTATTTCAGTAATTTTACAAATCAGAGGTA
** * *
46736503 TTTTGGTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTT
1 TTTTGGTAATTTTAAAAATCAAAGGTATTTCAGTAATTTT
46736542 TTAAACCAAG
Statistics
Matches: 198, Mismatches: 48, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
52 1 0.01
53 55 0.28
54 101 0.51
55 40 0.20
56 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (54 bp):
TTTTGGTAATTTTAAAAATCAAAGGTATTTCAGTAATTTTACAAATCAGAGGTA
Found at i:46736625 original size:27 final size:27
Alignment explanation
Indices: 46736551--46736618 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
46736541 TTTAAACCAA
* *
46736551 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTAGCCTACAG
*
46736578 GGGCATTTCAGTAATTCTAGCCTACAG
1 GGGTATTTCAGTAATTCTAGCCTACAG
46736605 GGGTATTTCAGTAA
1 GGGTATTTCAGTAA
46736619 CACTAGCTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTAGCCTACAG
Found at i:46736630 original size:27 final size:27
Alignment explanation
Indices: 46736571--46736630 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
46736561 ATAATTCTAC
**
46736571 CCTACAGGGGCATTTCAGTAATTCTAG
1 CCTACAGGGGCATTTCAGTAACACTAG
*
46736598 CCTACAGGGGTATTTCAGTAACACTAG
1 CCTACAGGGGCATTTCAGTAACACTAG
*
46736625 CTTACA
1 CCTACA
46736631 TATATGAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (27 bp):
CCTACAGGGGCATTTCAGTAACACTAG
Found at i:46743247 original size:55 final size:53
Alignment explanation
Indices: 46743160--46743328 Score: 196
Period size: 55 Copynumber: 3.1 Consensus size: 53
46743150 ATTAGGGTTT
*
46743160 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGC-ATTGGTAA-GTTTATAAGGC
* * * * *
46743215 AAGGATACCATGTAAGACCGTGTCAAGACATGGCATTGATAAGTTACTGTAAGAC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTT--TATAAGGC
* * * *
46743270 AAAGG-TCCCATGCAAGACCATGTCAAGGCATGACATTGGTAAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTATAAGGC
46743323 AAGGAT
1 AAGGAT
46743329 TACATCTCCG
Statistics
Matches: 95, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
52 4 0.04
53 9 0.09
54 7 0.07
55 71 0.75
56 4 0.04
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTATAAGGC
Found at i:46753016 original size:43 final size:43
Alignment explanation
Indices: 46752963--46753186 Score: 279
Period size: 43 Copynumber: 5.4 Consensus size: 43
46752953 GGTTTAATGT
46752963 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCGGCCAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCGGCCAATTA
* *
46753006 ATTGGCACTAAGTGTACGATACAATTATAGCCTCGGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCGGCCAATTA
* *
46753049 ATTGGCACTAAGTATGTGATACAATTATAGCCTCGG-C---TA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCGGCCAATTA
* *
46753088 A-T-----TAATTGTGCGATACAATTATAGCCTCGGCCAAATA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCGGCCAATTA
* * * *
46753125 ATTAGCACTAAGTGTGCGATACAATTATAGCTTCAGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCCTCGGCCAATTA
*
46753168 ATCGGCACTAAGTGTGCGA
1 ATTGGCACTAAGTGTGCGA
46753187 GTTCGTTGAA
Statistics
Matches: 155, Mismatches: 16, Indels: 20
0.81 0.08 0.10
Matches are distributed among these distances:
33 25 0.16
34 1 0.01
37 3 0.02
38 2 0.01
39 3 0.02
43 121 0.78
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATTATAGCCTCGGCCAATTA
Found at i:46753148 original size:76 final size:76
Alignment explanation
Indices: 46753022--46753169 Score: 233
Period size: 76 Copynumber: 1.9 Consensus size: 76
46753012 ACTAAGTGTA
* * * * *
46753022 CGATACAATTATAGCCTCGGCTAATTAATTGGCACTAAGTATGTGATACAATTATAGCCTCGGCT
1 CGATACAATTATAGCCTCGGCCAAATAATTAGCACTAAGTATGCGATACAATTATAGCCTCAGCT
46753087 AATTAATTGTG
66 AATTAATTGTG
* *
46753098 CGATACAATTATAGCCTCGGCCAAATAATTAGCACTAAGTGTGCGATACAATTATAGCTTCAGCT
1 CGATACAATTATAGCCTCGGCCAAATAATTAGCACTAAGTATGCGATACAATTATAGCCTCAGCT
46753163 AATTAAT
66 AATTAAT
46753170 CGGCACTAAG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (76 bp):
CGATACAATTATAGCCTCGGCCAAATAATTAGCACTAAGTATGCGATACAATTATAGCCTCAGCT
AATTAATTGTG
Found at i:46754067 original size:22 final size:22
Alignment explanation
Indices: 46754042--46754123 Score: 74
Period size: 22 Copynumber: 3.6 Consensus size: 22
46754032 TTATATGGCC
46754042 ATGTGAAAATGGCTTATTCATG
1 ATGTGAAAATGGCTTATTCATG
* * * *
46754064 ATGTTAATATGGCGTATATTTGATT
1 ATGTGAAAATGGC-T-TA-TTCATG
*
46754089 ATGCGAAAATGGCTTATTCATG
1 ATGTGAAAATGGCTTATTCATG
* *
46754111 ATGTTAATATGGC
1 ATGTGAAAATGGC
46754124 GTATATTTAA
Statistics
Matches: 45, Mismatches: 12, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
22 25 0.56
23 3 0.07
24 3 0.07
25 14 0.31
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (22 bp):
ATGTGAAAATGGCTTATTCATG
Found at i:46754102 original size:47 final size:47
Alignment explanation
Indices: 46754046--46754138 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
46754036 ATGGCCATGT
*
46754046 GAAAATGGCTTATTCATGATGTTAATATGGCGTATATTTGATTATGC
1 GAAAATGGCTTATTCATGATGTTAATATGGCGTATATTTAATTATGC
46754093 GAAAATGGCTTATTCATGATGTTAATATGGCGTATATTTAATTATG
1 GAAAATGGCTTATTCATGATGTTAATATGGCGTATATTTAATTATG
46754139 TATTGAGCTC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (47 bp):
GAAAATGGCTTATTCATGATGTTAATATGGCGTATATTTAATTATGC
Found at i:46755521 original size:46 final size:46
Alignment explanation
Indices: 46755469--46755644 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
46755459 TGGTTGAGCA
46755469 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
46755515 TTCGAACTCGTTGAGTTGAGTCCGAGTT--CGTGT-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
46755560 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
46755608 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46755645 GCAGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 3 0.03
45 1 0.01
46 62 0.57
47 26 0.24
48 1 0.01
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:46755625 original size:93 final size:93
Alignment explanation
Indices: 46755466--46755635 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
46755456 GGATGGTTGA
* **
46755466 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
46755531 TGAGTCCGAGTTCGTGTGATGTAACTAG
66 TGAGTCCGAGTTCGTGTGATGTAACTAG
* *
46755559 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
46755624 TGAGTCCGAGTT
66 TGAGTCCGAGTT
46755636 TACTTATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGTGATGTAACTAG
Found at i:46761317 original size:46 final size:46
Alignment explanation
Indices: 46761265--46761440 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
46761255 TGGTTGAGCA
46761265 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
46761311 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
46761356 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
46761404 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46761441 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:46761421 original size:93 final size:93
Alignment explanation
Indices: 46761262--46761431 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
46761252 GGATGGTTGA
* * **
46761262 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAACTCGTTGAGT
46761327 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
46761355 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAACTCGTTGAGT
46761420 TGAGTCCGAGTT
66 TGAGTCCGAGTT
46761432 TACTTATGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46764183 original size:22 final size:23
Alignment explanation
Indices: 46764111--46764218 Score: 96
Period size: 23 Copynumber: 4.7 Consensus size: 23
46764101 GATATATCAG
* *
46764111 CTCGAAAGAGCTTACTGTTTTCAT
1 CTCGATAGAGCTTACTG-TTTCAA
* *
46764135 CTC-ATTAGGGCTTATTGTTTCAA
1 CTCGA-TAGAGCTTACTGTTTCAA
*
46764158 CTCG-TATGAGCTTACTG-TTCAG
1 CTCGATA-GAGCTTACTGTTTCAA
**
46764180 CTCGATAGAGCTTACCATTTCAA
1 CTCGATAGAGCTTACTGTTTCAA
*
46764203 CTCAATAGAGCTTACT
1 CTCGATAGAGCTTACT
46764219 ATTCATCAGC
Statistics
Matches: 67, Mismatches: 12, Indels: 11
0.74 0.13 0.12
Matches are distributed among these distances:
22 18 0.27
23 37 0.55
24 12 0.18
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (23 bp):
CTCGATAGAGCTTACTGTTTCAA
Found at i:46764601 original size:31 final size:31
Alignment explanation
Indices: 46764563--46764656 Score: 161
Period size: 31 Copynumber: 3.0 Consensus size: 31
46764553 TTAAATTCTG
46764563 AATTATACGGGCTTACTAAGCTATAAAGCTT
1 AATTATACGGGCTTACTAAGCTATAAAGCTT
* * *
46764594 AATTATACAGGCTTACCAAGCTATAAAACTT
1 AATTATACGGGCTTACTAAGCTATAAAGCTT
46764625 AATTATACGGGCTTACTAAGCTATAAAGCTT
1 AATTATACGGGCTTACTAAGCTATAAAGCTT
46764656 A
1 A
46764657 CTTTGTTTCT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 57 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (31 bp):
AATTATACGGGCTTACTAAGCTATAAAGCTT
Found at i:46786057 original size:15 final size:15
Alignment explanation
Indices: 46786034--46786068 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
46786024 CACCCAAATC
*
46786034 ACATAACTCCTAATG
1 ACATGACTCCTAATG
46786049 ACATGACTCCTAATG
1 ACATGACTCCTAATG
46786064 ACATG
1 ACATG
46786069 TCATTCGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (15 bp):
ACATGACTCCTAATG
Found at i:46788522 original size:40 final size:39
Alignment explanation
Indices: 46788353--46788562 Score: 307
Period size: 39 Copynumber: 5.3 Consensus size: 39
46788343 GGACTAAGAT
46788353 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
46788392 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
*
46788431 CCGAAGGCATTTGTGCAAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * * *
46788470 CCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* *
46788510 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
46788550 CCGAAGGCATTTG
1 CCGAAGGCATTTG
46788563 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 111 0.71
40 45 0.29
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:46788576 original size:40 final size:39
Alignment explanation
Indices: 46788302--46788568 Score: 196
Period size: 39 Copynumber: 6.8 Consensus size: 39
46788292 TGAATGATGT
* *
46788302 CCGGGCTAAGTCCCGAAGGC-TTGTGCTA--AGTGACAATAT
1 CCGGGCTAAGTCCCGAAGGCATT-TG-TACGAGT-ACTATAA
* * * *
46788341 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTACGAG-TACTATA-A
* *
46788381 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAG-TACTATA-A
* * *
46788420 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAG-TACTATA-A
46788459 CCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAG-TACTATAA
* * *
46788497 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTACG-AGTACTATAA
* *
46788538 CCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAG
46788569 GAGCTATATC
Statistics
Matches: 198, Mismatches: 19, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 129 0.65
40 64 0.32
41 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTACTATAA
Found at i:46811750 original size:25 final size:25
Alignment explanation
Indices: 46811721--46811768 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
46811711 TTATAATATG
* * *
46811721 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
46811746 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
46811769 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:46811852 original size:11 final size:11
Alignment explanation
Indices: 46811816--46811871 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
46811806 CATGGTATGT
46811816 ATGATATGCAC
1 ATGATATGCAC
* *
46811827 ATGACATG--T
1 ATGATATGCAC
46811836 ATGATATGCAC
1 ATGATATGCAC
*
46811847 ATGATATG--T
1 ATGATATGCAC
46811856 ATGATATGCAC
1 ATGATATGCAC
46811867 ATGAT
1 ATGAT
46811872 GTATTTATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:46811871 original size:20 final size:20
Alignment explanation
Indices: 46811805--46811871 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
46811795 ATTTTGATAA
*
46811805 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
46811825 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
46811845 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
46811865 ACATGAT
1 ACATGAT
46811872 GTATTTATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:46812009 original size:24 final size:24
Alignment explanation
Indices: 46811920--46812037 Score: 163
Period size: 23 Copynumber: 5.0 Consensus size: 24
46811910 GAGGAAGTGC
46811920 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
46811944 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
46811967 -AAATGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
46811990 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
46812014 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
46812038 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
23 51 0.59
24 19 0.22
25 16 0.19
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:46812294 original size:31 final size:31
Alignment explanation
Indices: 46812231--46812294 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
46812221 CGTTTACAGT
* *
46812231 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATAAAATATGA
**
46812262 AAAGGCTTCGGCCCAGTGTTATAAAATATGA
1 AAAGGCTTCGGCCCAGTAATATAAAATATGA
46812293 AA
1 AA
46812295 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATAAAATATGA
Found at i:46814481 original size:25 final size:24
Alignment explanation
Indices: 46814447--46814493 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
46814437 TAAAGAAATG
*
46814447 GAAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAAGA-AAAAAAAATGAT
*
46814472 GAAAACAAAAGAAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAAATG
46814494 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.06
Consensus pattern (24 bp):
GAAAAAAAAAGAAAAAAAAATGAT
Found at i:46814984 original size:39 final size:40
Alignment explanation
Indices: 46814873--46815104 Score: 188
Period size: 40 Copynumber: 5.8 Consensus size: 40
46814863 TTGAATGATG
* * * *
46814873 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
*
46814912 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
* * * *
46814953 TCCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * ** *
46814992 TCTGGGTTAAGTTTCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* *
46815031 AACCGGGCTATGTCCCGAAGGCATTTGTACGAGTTACT-AT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * ** *
46815071 AACCGGGCTATGTCTAGAAGGCATTTGAACGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
46815105 AGCTCTATCC
Statistics
Matches: 159, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
39 33 0.21
40 117 0.74
41 9 0.06
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:46821695 original size:25 final size:23
Alignment explanation
Indices: 46821661--46821706 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
46821651 TAAAGAAATG
46821661 GAAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAAGA-AAA-AAAATGAT
*
46821686 GAAAACAAAAGAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAATG
46821707 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (23 bp):
GAAAAAAAAAGAAAAAAAATGAT
Found at i:46822317 original size:40 final size:40
Alignment explanation
Indices: 46822086--46822310 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
46822076 TCGAATGATG
* * * *
46822086 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
46822126 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46822166 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46822205 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46822246 -CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46822286 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46822311 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46822332 original size:119 final size:119
Alignment explanation
Indices: 46822093--46822333 Score: 285
Period size: 119 Copynumber: 2.0 Consensus size: 119
46822083 ATGTCCGGGC
*
46822093 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCAAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCAAAGGCATTTGTGCGAG
** *
46822158 TTACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCTGGGT
66 TTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCTCGGT
* * * * * *
46822212 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCAAAGGCATTTGTGCG
* * *
46822275 AGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATC-CGGT
64 AGTTACTA-AATCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAATCTCGGT
46822331 TAA
1 TAA
46822334 ATTCTAAAGG
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
118 1 0.01
119 71 0.68
120 32 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCAAAGGCATTTGTGCGAG
TTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCTCGGT
Found at i:46833698 original size:26 final size:26
Alignment explanation
Indices: 46833662--46833714 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
46833652 AATAAATTTG
46833662 ATGTAATCCTTGGGATGGATTGGTTA
1 ATGTAATCCTTGGGATGGATTGGTTA
46833688 ATGTAATCCTTGGGATGGATTGGTTA
1 ATGTAATCCTTGGGATGGATTGGTTA
46833714 A
1 A
46833715 CTTCTCATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.08, G:0.30, T:0.38
Consensus pattern (26 bp):
ATGTAATCCTTGGGATGGATTGGTTA
Found at i:46836847 original size:40 final size:40
Alignment explanation
Indices: 46836796--46836992 Score: 304
Period size: 40 Copynumber: 4.9 Consensus size: 40
46836786 ATAACCGCAA
* * * *
46836796 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
46836836 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
46836876 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
46836916 GCACAAATGCCTTCGGGTTTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
46836956 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
46836993 ATGCTCATGC
Statistics
Matches: 141, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:46845086 original size:40 final size:39
Alignment explanation
Indices: 46844996--46845189 Score: 275
Period size: 40 Copynumber: 4.9 Consensus size: 39
46844986 ATAACCGCAA
* *
46844996 GCACAATTGCCTTCGGGTCTTAACCCGG-TATAGCAACTC
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
46845035 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
46845075 GCATAATTGCCTTCGGGTCTTAGCCTGGATATATCAACTC
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
46845115 GCACAATGCCTTC-GGTTTTAGCCCGGATATATCAACTC
1 GCACAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
46845153 GCACAAATGCCTTCGGGTCTTATCCCGGATATATCAA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATCAA
46845190 TGCTCATGCA
Statistics
Matches: 139, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
38 27 0.19
39 42 0.30
40 70 0.50
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:46845168 original size:78 final size:80
Alignment explanation
Indices: 46844996--46845189 Score: 295
Period size: 78 Copynumber: 2.5 Consensus size: 80
46844986 ATAACCGCAA
*
46844996 GCACAATTGCCTTCGGGTCTTAACCCGG-TATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCC
*
46845060 CGGATATATCAACTT
66 CGGATATATCAACTC
* * * *
46845075 GCATAATTGCCTTCGGGTCTTAGCCTGGATATATCAACTCGCAC-AATGCCTTC-GGTTTTAGCC
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCC
46845138 CGGATATATCAACTC
66 CGGATATATCAACTC
* *
46845153 GCACAAATGCCTTCGGGTCTTATCCCGGATATATCAA
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATATCAA
46845190 TGCTCATGCA
Statistics
Matches: 104, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
78 56 0.54
79 34 0.33
80 14 0.13
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (80 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTC
Found at i:46877398 original size:27 final size:27
Alignment explanation
Indices: 46877360--46877412 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
46877350 ATCTGAGTAG
*
46877360 ACATACTTTTATTATTTATTTTGATTT
1 ACATACTTTTATGATTTATTTTGATTT
46877387 ACATACTTTTATGATTTATTTTGATT
1 ACATACTTTTATGATTTATTTTGATT
46877413 AATTTTAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.08, G:0.06, T:0.60
Consensus pattern (27 bp):
ACATACTTTTATGATTTATTTTGATTT
Found at i:46877663 original size:17 final size:16
Alignment explanation
Indices: 46877637--46877668 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
46877627 GGTAAGTTTT
46877637 ATTAATTTAAATTATG
1 ATTAATTTAAATTATG
46877653 ATTATATTTAAATTAT
1 ATTA-ATTTAAATTAT
46877669 AGAGTAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
ATTAATTTAAATTATG
Found at i:46877884 original size:9 final size:9
Alignment explanation
Indices: 46877870--46877922 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
46877860 GGTTTAGGGT
46877870 TTTTTTATA
1 TTTTTTATA
*
46877879 TTTTTTAAA
1 TTTTTTATA
46877888 TTCTTTATATA
1 TT-TTT-TATA
* *
46877899 TTCTTTAGA
1 TTTTTTATA
*
46877908 CTTTTTATA
1 TTTTTTATA
46877917 TTTTTT
1 TTTTTT
46877923 TGAATTGTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
9 24 0.71
10 5 0.15
11 5 0.15
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.70
Consensus pattern (9 bp):
TTTTTTATA
Found at i:46877894 original size:18 final size:18
Alignment explanation
Indices: 46877871--46877928 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
46877861 GTTTAGGGTT
46877871 TTTTTATATTTTTTA-AA
1 TTTTTATATTTTTTAGAA
*
46877888 TTCTTTATATATTCTTTAGAC
1 TT-TTTATAT-TT-TTTAGAA
*
46877909 TTTTTATATTTTTTTGAA
1 TTTTTATATTTTTTAGAA
46877927 TT
1 TT
46877929 GTAAAGTTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 2 0.06
18 14 0.41
19 4 0.12
20 11 0.32
21 3 0.09
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTATATTTTTTAGAA
Found at i:46877898 original size:20 final size:19
Alignment explanation
Indices: 46877869--46877928 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
46877859 AGGTTTAGGG
*
46877869 TTTTTTTATATTTTTTAAA
1 TTTTTATATATTTTTTAAA
* *
46877888 TTCTTTATATATTCTTTAGAC
1 TT-TTTATATATTTTTTA-AA
*
46877909 TTTTTATAT-TTTTTTGAA
1 TTTTTATATATTTTTTAAA
46877927 TT
1 TT
46877929 GTAAAGTTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
18 3 0.09
19 7 0.21
20 20 0.61
21 3 0.09
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTATATATTTTTTAAA
Found at i:46884454 original size:11 final size:11
Alignment explanation
Indices: 46884421--46884454 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
46884411 ATGAATGTAA
46884421 GTTTTGGTGTAG
1 GTTTTGG-GTAG
46884433 GTTTATGGGTAG
1 GTTT-TGGGTAG
46884445 GTTTTGGGTA
1 GTTTTGGGTA
46884455 AGAAATGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.29
12 12 0.57
13 3 0.14
ACGTcount: A:0.12, C:0.00, G:0.41, T:0.47
Consensus pattern (11 bp):
GTTTTGGGTAG
Found at i:46894850 original size:23 final size:23
Alignment explanation
Indices: 46894830--46894879 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
46894820 TGGCCTAAGT
46894830 ATAAAATGTGGAATGTGCTAATG
1 ATAAAATGTGGAATGTGCTAATG
46894853 ATAAAATGTGGAATGTGCTAATG
1 ATAAAATGTGGAATGTGCTAATG
46894876 ATAA
1 ATAA
46894880 CCCCAATACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.42, C:0.04, G:0.24, T:0.30
Consensus pattern (23 bp):
ATAAAATGTGGAATGTGCTAATG
Found at i:46900982 original size:23 final size:23
Alignment explanation
Indices: 46900956--46901002 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
46900946 TAGTGGGCCT
*
46900956 CACATAACCTTGGTAATAAAAAA
1 CACATAACCTTGGCAATAAAAAA
46900979 CACATAACCTTGGCAATAAAAAA
1 CACATAACCTTGGCAATAAAAAA
46901002 C
1 C
46901003 TAACGCTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.51, C:0.21, G:0.09, T:0.19
Consensus pattern (23 bp):
CACATAACCTTGGCAATAAAAAA
Found at i:46910666 original size:41 final size:43
Alignment explanation
Indices: 46910574--46910734 Score: 118
Period size: 43 Copynumber: 3.8 Consensus size: 43
46910564 ACAATGCCAA
* * *
46910574 GTCCCAGAC-GTGGTCTTACATGTAATGAAATATTGATGCCACT
1 GTCCCAGACAG-GGTCTTACACGAAATCAAATATTGATGCCACT
*
46910617 GTCTCAGACAGGGTCTTA-ACGAAATCAAATA-TGATGCCGA-T
1 GTCCCAGACAGGGTCTTACACGAAATCAAATATTGATGCC-ACT
* * * * * *
46910658 GTCCCAGACATGGTCTTACATGTATATCTCAA-ATCGATGCCAAT
1 GTCCCAGACAGGGTCTTACACG-AAATC-AAATATTGATGCCACT
** *
46910702 GTCTTAGA-AGTGGTCTTACACGAAATCACATAT
1 GTCCCAGACAG-GGTCTTACACGAAATCAAATAT
46910735 CGAAAATCCT
Statistics
Matches: 92, Mismatches: 17, Indels: 18
0.72 0.13 0.14
Matches are distributed among these distances:
41 24 0.26
42 14 0.15
43 28 0.30
44 26 0.28
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACACGAAATCAAATATTGATGCCACT
Found at i:46916341 original size:48 final size:48
Alignment explanation
Indices: 46916270--46916366 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
46916260 TGATTGTGCT
* *
46916270 GACCCAGGGTCAATTAATGCATTCATAGTAACATCAAAGATAGAAAAG
1 GACCCAAGGTCAATTAATGCATTCACAGTAACATCAAAGATAGAAAAG
46916318 GACCCAAGGTCAATTAATGCATTCACAGTAACATCAAAGATAGAAAAG
1 GACCCAAGGTCAATTAATGCATTCACAGTAACATCAAAGATAGAAAAG
46916366 G
1 G
46916367 TATCAGCGAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.20
Consensus pattern (48 bp):
GACCCAAGGTCAATTAATGCATTCACAGTAACATCAAAGATAGAAAAG
Found at i:46923458 original size:13 final size:13
Alignment explanation
Indices: 46923440--46923464 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46923430 CTTAACATCC
46923440 TTTTGAAGTAATG
1 TTTTGAAGTAATG
46923453 TTTTGAAGTAAT
1 TTTTGAAGTAAT
46923465 CTTGTCATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TTTTGAAGTAATG
Found at i:46928685 original size:27 final size:26
Alignment explanation
Indices: 46928630--46928740 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
46928620 AGCATGGCTG
* *
46928630 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
46928656 CCAAAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
46928683 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
46928710 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
46928737 CCAG
1 CCAG
46928741 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 14 0.18
27 60 0.79
28 2 0.03
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:46937603 original size:27 final size:27
Alignment explanation
Indices: 46937573--46937750 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46937563 ATATTGAGTC
* * * *
46937573 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
46937600 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46937627 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
46937655 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
46937682 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
46937709 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46937736 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46937751 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:46937712 original size:82 final size:81
Alignment explanation
Indices: 46937594--46937749 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46937584 TGCTATATAA
* *
46937594 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
46937659 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
46937676 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
46937740 CACTTAGTGC
65 CACTTAGTGC
46937750 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46939813 original size:27 final size:26
Alignment explanation
Indices: 46939755--46939865 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
46939745 AGCATGGCTG
*
46939755 CCAGAACAGATAATG-TGACAGAGTCA
1 CCAGAACAGATAATGTTG-CAGAGCCA
* *
46939781 CTAGAATAGATAATCGTTGCAGAGCCA
1 CCAGAACAGATAAT-GTTGCAGAGCCA
*
46939808 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTTGCAGAGCCA
* *
46939835 CCAGATCAGATAAT-TATGGCATAGCCA
1 CCAGAACAGATAATGT-T-GCAGAGCCA
46939862 CCAG
1 CCAG
46939866 GATGCTTCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
25 1 0.01
26 14 0.20
27 52 0.73
28 4 0.06
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTTGCAGAGCCA
Found at i:46939861 original size:54 final size:53
Alignment explanation
Indices: 46939755--46939865 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 53
46939745 AGCATGGCTG
* * * *
46939755 CCAGAACAGATAATGTGACAGAGTCACTAGAATAGATAATCGTTGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAATAGATAATCATGGCAGAGCCA
* * *
46939808 CCAGAACAGATATATGTGGCAGAGCCACCAG-ATCAGATAATTATGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGAAT-AGATAATCATGGCAGAGCCA
46939862 CCAG
1 CCAG
46939866 GATGCTTCCT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 14 0.29
54 35 0.71
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGAATAGATAATCATGGCAGAGCCA
Found at i:46941310 original size:24 final size:24
Alignment explanation
Indices: 46941275--46941327 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
46941265 CCAACACTGT
46941275 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
*
46941299 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
46941323 TCTCC
1 TCTCC
46941328 TGACAGACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCTAAATCC
Found at i:46949901 original size:9 final size:9
Alignment explanation
Indices: 46949877--46949925 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
46949867 TACATTCAAA
46949877 TCTC-ATTC
1 TCTCAATTC
46949885 TC-CTAATTC
1 TCTC-AATTC
46949894 TCTCAATTC
1 TCTCAATTC
46949903 AT-TC-ATTC
1 -TCTCAATTC
46949911 TCTCAATTC
1 TCTCAATTC
46949920 TCTCAA
1 TCTCAA
46949926 CATTTTAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
7 2 0.06
8 8 0.23
9 23 0.66
10 2 0.06
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.45
Consensus pattern (9 bp):
TCTCAATTC
Found at i:46962646 original size:41 final size:40
Alignment explanation
Indices: 46962544--46962690 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
46962534 CTTTTATCAA
** *
46962544 ATCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTC
1 ATCACCGGCATTTAGCCTGCTAGACTTTAAACCCGAACTC
* *** * *
46962584 ATCAACGGCACGAAGCCTGCTAGACTTTAAATCTGAACTC
1 ATCACCGGCATTTAGCCTGCTAGACTTTAAACCCGAACTC
* * * *
46962624 ATTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATA-TC
1 A-TCACCGGCATTTAGCCTGCTAGACTTTAAACCCGA-ACTC
46962665 ATTTCACCGGCATTATAGCCTGCTAG
1 A--TCACCGGCATT-TAGCCTGCTAG
46962691 GCCTGAAGCC
Statistics
Matches: 83, Mismatches: 20, Indels: 5
0.77 0.19 0.05
Matches are distributed among these distances:
40 32 0.39
41 28 0.34
42 13 0.16
43 10 0.12
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (40 bp):
ATCACCGGCATTTAGCCTGCTAGACTTTAAACCCGAACTC
Found at i:46962698 original size:43 final size:42
Alignment explanation
Indices: 46962625--46962705 Score: 135
Period size: 43 Copynumber: 1.9 Consensus size: 42
46962615 TCTGAACTCA
* *
46962625 TTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTTAGCCTGCTAGGCCTGAAGCCCGATATCAT
46962667 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATA
1 TTCACCGGCATT-TAGCCTGCTAGGCCTGAAGCCCGATA
46962706 ATATTATTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
42 12 0.33
43 24 0.67
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (42 bp):
TTCACCGGCATTTAGCCTGCTAGGCCTGAAGCCCGATATCAT
Found at i:46962903 original size:28 final size:28
Alignment explanation
Indices: 46962872--46962943 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
46962862 TTGATATGTT
*
46962872 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
46962900 GCACACTAGGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
46962928 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
46962944 ATTTGATTGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:46966344 original size:28 final size:28
Alignment explanation
Indices: 46966311--46966382 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
46966301 TTGATATTTT
*
46966311 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
46966339 GCACACTAGGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
46966367 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
46966383 ATTTGATTGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:46985386 original size:43 final size:43
Alignment explanation
Indices: 46985280--46985378 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
46985270 CTTAAGGAAC
* * *
46985280 CCCGTTCGGGCTAGATCCTTTCTATATTGAGATAAATGGATCA
1 CCCGTTCGGGCTAGATCCTTTCTAAATTGAGATAAACGAATCA
* * * *
46985323 CCCGTTTGGGCTAGTTCCTTTCTAAATTGAGATCAACGAATTA
1 CCCGTTCGGGCTAGATCCTTTCTAAATTGAGATAAACGAATCA
*
46985366 CCCGTCCGGGCTA
1 CCCGTTCGGGCTA
46985379 AACCCTTTTC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.31
Consensus pattern (43 bp):
CCCGTTCGGGCTAGATCCTTTCTAAATTGAGATAAACGAATCA
Found at i:46998516 original size:13 final size:13
Alignment explanation
Indices: 46998498--46998526 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
46998488 GGTTGTTTAT
46998498 TAAACTAATTAAC
1 TAAACTAATTAAC
46998511 TAAACTAATTAAC
1 TAAACTAATTAAC
46998524 TAA
1 TAA
46998527 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:47001429 original size:11 final size:11
Alignment explanation
Indices: 47001407--47001436 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
47001397 GAAATGAAAA
47001407 AATAATAATAAT
1 AATAA-AATAAT
47001419 AATAAAATAAT
1 AATAAAATAAT
47001430 AATAAAA
1 AATAAAA
47001437 AGATAGGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:47006851 original size:8 final size:8
Alignment explanation
Indices: 47006838--47006868 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
47006828 TTGTTTATTA
47006838 AACTAATT
1 AACTAATT
47006846 AACTAATT
1 AACTAATT
47006854 AACTAATT
1 AACTAATT
47006862 AAACTAA
1 -AACTAA
47006869 AGTGAAGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 16 0.73
9 6 0.27
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (8 bp):
AACTAATT
Found at i:47009718 original size:27 final size:27
Alignment explanation
Indices: 47009688--47009865 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
47009678 ATATTGAGTC
* * * *
47009688 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
47009715 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
47009742 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
47009770 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
47009797 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
47009824 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
47009851 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47009866 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:47009827 original size:82 final size:81
Alignment explanation
Indices: 47009709--47009864 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
47009699 TGCTATATAA
* *
47009709 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
47009774 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
47009791 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
47009855 CACTTAGTGC
65 CACTTAGTGC
47009865 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47016655 original size:53 final size:53
Alignment explanation
Indices: 47016473--47016676 Score: 185
Period size: 53 Copynumber: 3.8 Consensus size: 53
47016463 ATTAAGGTTT
* * * * * * * *
47016473 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTAGTAAGTTTTACAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAA-CTTCATAAGGC
* * * * * * *
47016527 AAGGAAATCATGTAAGACCATGTCAAGACATGGTATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AACTTC-ATAAGGC
* * *
47016582 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAA-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AACTTCATAAGGC
* *
47016635 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAA
47016677 GTTTAAAAAG
Statistics
Matches: 119, Mismatches: 29, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
52 2 0.02
53 42 0.35
54 35 0.29
55 40 0.34
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAACTTCATAAGGC
Found at i:47017118 original size:46 final size:46
Alignment explanation
Indices: 47017061--47017154 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
47017051 GAATACTTGG
47017061 TAATGATTAGCTTATGATATAGCTAAATAAGAAAATGTTTTGGTAT
1 TAATGATTAGCTTATGATATAGCTAAATAAGAAAATGTTTTGGTAT
*
47017107 TAATGATTAGCTTATGATATAGCTAAATAAGAACATGTTTTGGTAT
1 TAATGATTAGCTTATGATATAGCTAAATAAGAAAATGTTTTGGTAT
47017153 TA
1 TA
47017155 TGTATGCCTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.39
Consensus pattern (46 bp):
TAATGATTAGCTTATGATATAGCTAAATAAGAAAATGTTTTGGTAT
Found at i:47022633 original size:27 final size:27
Alignment explanation
Indices: 47022603--47022744 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
47022593 TTTAGTTTAC
*
47022603 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGACTTG
* *
47022630 TAAAATTACTAAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGACTTG
* * ** *
47022657 TTAAATTAC-GAAAATACCCCCGGTTTA
1 TAAAATTACTG-AAATACCCTCGACTTG
* *
47022684 TAAAATTACCGAAATACCGTCGA-TTG
1 TAAAATTACTGAAATACCCTCGACTTG
*
47022710 TAAAATTACTGAAATACCATCGACTTG
1 TAAAATTACTGAAATACCCTCGACTTG
47022737 TAAAATTA
1 TAAAATTA
47022745 TCAAAGTAGC
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 23 0.24
27 71 0.75
28 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGACTTG
Found at i:47022787 original size:80 final size:80
Alignment explanation
Indices: 47022598--47022788 Score: 213
Period size: 80 Copynumber: 2.4 Consensus size: 80
47022588 GAATATTTAG
* * *
47022598 TTTACTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCTTCGACTTGTTAAAT
1 TTTAC-AAAATTACCGAAATACCCTCGA-TTGTAAAATTACTAAAATACCATCGACTTGTAAAAT
**
47022663 TACGAAAATACCCCCGG
64 TACGAAAATACCCCCAA
* * *
47022680 TTTATAAAATTACCGAAATACCGTCGATTGTAAAATTACTGAAATACCATCGACTTGTAAAATTA
1 TTTACAAAATTACCGAAATACCCTCGATTGTAAAATTACTAAAATACCATCGACTTGTAAAATTA
* *
47022745 TC-AAAGTAGCCCCAA
66 -CGAAAATACCCCCAA
* * ***
47022760 TTTACAGAATTGCCGTTTTACCCTCGATT
1 TTTACAAAATTACCGAAATACCCTCGATT
47022789 TACAGAATTA
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 66 0.73
81 21 0.23
82 4 0.04
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (80 bp):
TTTACAAAATTACCGAAATACCCTCGATTGTAAAATTACTAAAATACCATCGACTTGTAAAATTA
CGAAAATACCCCCAA
Found at i:47022789 original size:27 final size:27
Alignment explanation
Indices: 47022759--47023069 Score: 370
Period size: 27 Copynumber: 11.5 Consensus size: 27
47022749 AGTAGCCCCA
* *
47022759 ATTTACAGAATTGCCGTTTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
* * *
47022786 ATTTACAGAATTACCATTTTACCCTCT
1 ATTTATAGAATTACCGTTTTACCCTCG
*
47022813 ATTTATAGAATTACTGTTTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
47022840 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
* *
47022867 ATTTATAGAATTACCATCTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
* * *
47022894 ATTTACAAAATTACAGTTTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
* *
47022921 ATTTATAAAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
* ** *
47022948 ATTTATAGAAATACAATTTTACCCTTG
1 ATTTATAGAATTACCGTTTTACCCTCG
* * * * *
47022975 ATTTACAAAATTATCATTTTACGCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
* *
47023002 ATTTACAGAATTACCGTTTTATCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
* *
47023029 ATTTATAGAATTATCGTTTTACCCTTG
1 ATTTATAGAATTACCGTTTTACCCTCG
* *
47023056 ATTTAAAAAATTAC
1 ATTTATAGAATTAC
47023070 TAAAATACCC
Statistics
Matches: 243, Mismatches: 41, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 243 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
ATTTATAGAATTACCGTTTTACCCTCG
Found at i:47022857 original size:81 final size:81
Alignment explanation
Indices: 47022759--47023070 Score: 421
Period size: 81 Copynumber: 3.9 Consensus size: 81
47022749 AGTAGCCCCA
* * * *
47022759 ATTTACAGAATTGCCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCT-ATTTATAGAA
1 ATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCT-TGATTTACAAAA
47022823 TTACTGTTTTACCCTCG
65 TTACTGTTTTACCCTCG
* * *
47022840 ATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATCTTACCCTCGATTTACAAAAT
1 ATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAAT
*
47022905 TACAGTTTTACCCTCG
66 TACTGTTTTACCCTCG
* * * * *
47022921 ATTTATAAAATTACCATTTTACCCTCGATTTATAGAAATACAATTTTACCCTTGATTTACAAAAT
1 ATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAAT
* *
47022986 TA-TCATTTTACGCTCG
66 TACT-GTTTTACCCTCG
* * * *
47023002 ATTTACAGAATTACCGTTTTATCCTCGATTTATAGAATTATCGTTTTACCCTTGATTTAAAAAAT
1 ATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAAT
47023067 TACT
66 TACT
47023071 AAAATACCCT
Statistics
Matches: 202, Mismatches: 26, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
81 201 1.00
82 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
ATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAAT
TACTGTTTTACCCTCG
Found at i:47023122 original size:81 final size:80
Alignment explanation
Indices: 47023047--47023220 Score: 267
Period size: 81 Copynumber: 2.2 Consensus size: 80
47023037 AATTATCGTT
47023047 TTACCCTTGATTTAAAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGT
1 TTACCCTTGATTTAAAAAATTACTAAAATACCCTTGGTTTACAAAATTACC-AAATACCCCTAGT
47023112 TTGTAAAATTACCAAA
65 TTGTAAAATTACCAAA
* ** * * *
47023128 TTACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAATACCCTTGGTT
1 TTACCCTTGATTTAAAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAATACCCCTAGTT
47023193 TGTAAAATTACCAAA
66 TGTAAAATTACCAAA
* *
47023208 ATACCCCTGATTT
1 TTACCCTTGATTT
47023221 GTGAAATTAT
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 37 0.44
81 47 0.56
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (80 bp):
TTACCCTTGATTTAAAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAATACCCCTAGTT
TGTAAAATTACCAAA
Found at i:47023221 original size:27 final size:27
Alignment explanation
Indices: 47023048--47023229 Score: 231
Period size: 27 Copynumber: 6.8 Consensus size: 27
47023038 ATTATCGTTT
* ** *
47023048 TACCCTTGATTTAAAAAATTACTAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
**
47023075 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
* * *
47023102 TACCCCTAGTTTGTAAAATTACCAAAT
1 TACCCTTGGTTTGTAAAATTACCAAAA
*
47023129 TACCCTTGGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
*
47023156 TACCCTTGGTTTATAAAATTACC-AAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
47023182 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
* * *
47023209 TACCCCTGATTTGTGAAATTA
1 TACCCTTGGTTTGTAAAATTA
47023230 TCGAAAAACC
Statistics
Matches: 136, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 25 0.18
27 111 0.82
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGGTTTGTAAAATTACCAAAA
Found at i:47023253 original size:80 final size:80
Alignment explanation
Indices: 47023048--47023269 Score: 205
Period size: 80 Copynumber: 2.8 Consensus size: 80
47023038 ATTATCGTTT
* ** * *** * * * *
47023048 TACCCTTGATTTAAAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTT
1 TACCCCTGATTTGTAAAATTACGAAAATACCCTCAATTCATAAAATTACC-AAATACCCTTGGTT
*
47023113 TGTAAAATTACCAAAT
65 TGTAAAATTACCAAAA
* * * *** *
47023129 TACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAATACCCTTGGTTT
1 TACCCCTGATTTGTAAAATTACGAAAATACCCTCAATTCATAAAATTACCAAATACCCTTGGTTT
47023194 GTAAAATTACCAAAA
66 GTAAAATTACCAAAA
* * *
47023209 TACCCCTGATTTGTGAAATTATCGAAAA-ACCCTCAATTCGTAAAA-TACTGAAATACCCTTG
1 TACCCCTGATTTGTAAAATTA-CGAAAATACCCTCAATTCATAAAATTAC-CAAATACCCTTG
47023270 TAGGGTAGAA
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 3 0.02
80 68 0.56
81 51 0.42
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
TACCCCTGATTTGTAAAATTACGAAAATACCCTCAATTCATAAAATTACCAAATACCCTTGGTTT
GTAAAATTACCAAAA
Found at i:47023500 original size:27 final size:27
Alignment explanation
Indices: 47023254--47023499 Score: 357
Period size: 27 Copynumber: 9.1 Consensus size: 27
47023244 ATTCGTAAAA
*
47023254 TACTGAAATACCCTTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
47023281 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* * *
47023308 TATTGAAATACCCTTGTAGGGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAT
47023335 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
47023362 TACCGAAATATCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
*
47023389 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
47023416 TACCGAAATACCCATGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
*
47023443 TACTGAAATACCCCTATAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* * * * *
47023470 TACCGAGATACCCTTGTGGGGTAAAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
47023497 TAC
1 TAC
47023500 CATTTTGCCC
Statistics
Matches: 195, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 195 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
TACTGAAATACCCCTGTAGGGTAGAAT
Found at i:47023741 original size:25 final size:25
Alignment explanation
Indices: 47023703--47023772 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
47023693 AGGAAGTGCT
* *
47023703 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
47023728 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
47023753 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
47023773 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:47023785 original size:24 final size:24
Alignment explanation
Indices: 47023702--47023797 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 24
47023692 GAGGAAGTGC
*
47023702 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* * *
47023727 GAAAAGGGCTTTGCCCTAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
47023751 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
47023775 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
47023798 ATATGATAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
23 5 0.09
24 11 0.19
25 41 0.71
26 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Done.