Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 15 of 295
Found at i:4697927 original size:12 final size:12
Alignment explanation
Indices: 4697910--4697938 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
4697900 TGGCCTCTCC
4697910 TTTTTCTTTTCT
1 TTTTTCTTTTCT
4697922 TTTTTCTTTTCT
1 TTTTTCTTTTCT
4697934 TTTTT
1 TTTTT
4697939 TATTTTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTCTTTTCT
Found at i:4697966 original size:7 final size:7
Alignment explanation
Indices: 4697916--4697959 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
4697906 CTCCTTTTTC
4697916 TTTTCTT
1 TTTTCTT
4697923 TTTTCTT
1 TTTTCTT
*
4697930 TTCT-TT
1 TTTTCTT
*
4697936 TTTTATT
1 TTTTCTT
*
4697943 TTTTCAT
1 TTTTCTT
4697950 TTTTCTT
1 TTTTCTT
4697957 TTT
1 TTT
4697960 GTTTTTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
6 5 0.16
7 26 0.84
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTCTT
Found at i:4698404 original size:10 final size:10
Alignment explanation
Indices: 4698380--4698457 Score: 52
Period size: 10 Copynumber: 7.5 Consensus size: 10
4698370 CCAGTAGAGG
4698380 TTTTT-CTTT
1 TTTTTGCTTT
* *
4698389 TATTTGGTTT
1 TTTTTGCTTT
4698399 TTTTTGCTTT
1 TTTTTGCTTT
4698409 TTATTT-CTCGTT
1 TT-TTTGCT--TT
* *
4698421 TTTTTACCTT
1 TTTTTGCTTT
4698431 TTTTTGTCTTT
1 TTTTTG-CTTT
*
4698442 TTTTGTCCTTT
1 TTTT-TGCTTT
4698453 TTTTT
1 TTTTT
4698458 TTGCCTCCAC
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
9 4 0.07
10 23 0.43
11 21 0.39
12 6 0.11
ACGTcount: A:0.04, C:0.12, G:0.08, T:0.77
Consensus pattern (10 bp):
TTTTTGCTTT
Found at i:4698443 original size:21 final size:20
Alignment explanation
Indices: 4698396--4698456 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
4698386 TTTTATTTGG
*
4698396 TTTTTTTTGCTTTTTATTTCTC
1 TTTTTTTT-CCTTTT-TTTCTC
* *
4698418 GTTTTTTTACCTTTTTTTGTC
1 -TTTTTTTTCCTTTTTTTCTC
4698439 TTTTTTTGTCCTTTTTTT
1 TTTTTTT-TCCTTTTTTT
4698457 TTTGCCTCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 7 0.21
21 14 0.42
22 5 0.15
23 7 0.21
ACGTcount: A:0.03, C:0.13, G:0.07, T:0.77
Consensus pattern (20 bp):
TTTTTTTTCCTTTTTTTCTC
Found at i:4699842 original size:62 final size:62
Alignment explanation
Indices: 4699740--4699864 Score: 196
Period size: 62 Copynumber: 2.0 Consensus size: 62
4699730 CTAAACTCGA
* *
4699740 CGTACTTTTGGATTTTAGGAAATTTACTGTATGCAATGAAACGTAGTGTTGATGCATGAATG
1 CGTACTTTTGGATTTTAGGAAATTTACTGCATGCAATGAAACGTAATGTTGATGCATGAATG
* * * *
4699802 CGTATTTTTGGATTTTAGGAAATTTATTGCATGCGATGAAATGTAATGTTGATGCATGAATG
1 CGTACTTTTGGATTTTAGGAAATTTACTGCATGCAATGAAACGTAATGTTGATGCATGAATG
4699864 C
1 C
4699865 AAAAAAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (62 bp):
CGTACTTTTGGATTTTAGGAAATTTACTGCATGCAATGAAACGTAATGTTGATGCATGAATG
Found at i:4702346 original size:37 final size:37
Alignment explanation
Indices: 4702275--4702346 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
4702265 AAATATATAT
* *
4702275 ATATAAAATATTTACAATAATGATGTAAATAAACAAC
1 ATATAAAATATTTACAATAATCATATAAATAAACAAC
4702312 ATATAAAATATTTGA-AATAA-CATATAAATGAAACA
1 ATATAAAATATTT-ACAATAATCATATAAAT-AAACA
4702347 TTTAAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.23
37 23 0.74
38 1 0.03
ACGTcount: A:0.58, C:0.07, G:0.06, T:0.29
Consensus pattern (37 bp):
ATATAAAATATTTACAATAATCATATAAATAAACAAC
Found at i:4712808 original size:8 final size:8
Alignment explanation
Indices: 4712795--4712819 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
4712785 CGATTCTCAT
4712795 TCCTTCCC
1 TCCTTCCC
4712803 TCCTTCCC
1 TCCTTCCC
4712811 TCCTTCCC
1 TCCTTCCC
4712819 T
1 T
4712820 TCCCTCTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (8 bp):
TCCTTCCC
Found at i:4716331 original size:23 final size:23
Alignment explanation
Indices: 4716284--4716328 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
4716274 TTCTTTTATC
4716284 TTTTCACTATTCAATTTCCTTTG
1 TTTTCACTATTCAATTTCCTTTG
*
4716307 TTTTCA-TATTCGATTT-CTTTG
1 TTTTCACTATTCAATTTCCTTTG
4716328 T
1 T
4716329 GTTAGATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.29
22 9 0.43
23 6 0.29
ACGTcount: A:0.16, C:0.18, G:0.07, T:0.60
Consensus pattern (23 bp):
TTTTCACTATTCAATTTCCTTTG
Found at i:4716873 original size:19 final size:19
Alignment explanation
Indices: 4716831--4716873 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
4716821 TCCATTTATT
*
4716831 TTTAATTCATTTTATTCTA
1 TTTAATTCATTTTATACTA
*
4716850 GTTAATT-ATTTTTATACTA
1 TTTAATTCA-TTTTATACTA
4716869 TTTAA
1 TTTAA
4716874 GATTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTAATTCATTTTATACTA
Found at i:4721354 original size:24 final size:23
Alignment explanation
Indices: 4721318--4721380 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
4721308 ATAATATTTG
*
4721318 AAATTTACAATTTTGGAT-TAATCT
1 AAATTTACAA-TTTGGATAGAAT-T
**
4721342 AAATTTATTATTTGGATAGAATT
1 AAATTTACAATTTGGATAGAATT
4721365 AAATTTA-AATTTGGAT
1 AAATTTACAATTTGGAT
4721381 TTTAATCAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
22 8 0.24
23 15 0.44
24 11 0.32
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.46
Consensus pattern (23 bp):
AAATTTACAATTTGGATAGAATT
Found at i:4723934 original size:38 final size:39
Alignment explanation
Indices: 4723850--4723984 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
4723840 ACCAATATGG
*
4723850 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
4723889 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
4723927 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
4723968 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
4723985 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:4726691 original size:104 final size:103
Alignment explanation
Indices: 4726511--4726730 Score: 361
Period size: 104 Copynumber: 2.1 Consensus size: 103
4726501 ATATAAAAGA
** * *
4726511 GGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTTTGA
1 GGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGA
4726576 AATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGG
66 AATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCGAGG
* *
4726615 GGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCTTTG
1 GGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCTTTG
4726679 AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGAGG
65 AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGAGG
4726718 GGTTGCTAAGTGC
1 GGTTGCTAAGTGC
4726731 GATATCCATT
Statistics
Matches: 109, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
103 21 0.19
104 87 0.80
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.32
Consensus pattern (103 bp):
GGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGA
AATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCGAGG
Found at i:4726782 original size:70 final size:72
Alignment explanation
Indices: 4726650--4726800 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
4726640 TCATTGGTGG
* *
4726650 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
4726714 GAGGGGT
66 GAGGGGT
***
4726721 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
4726785 GAGGGGT
66 GAGGGGT
4726792 TGCTAAGTG
1 TGCTAAGTG
4726801 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 24 0.32
71 50 0.68
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:4733821 original size:5 final size:5
Alignment explanation
Indices: 4733805--4733838 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
4733795 TTTATATATA
4733805 ATAAT AATAAT ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATA
4733839 CTTAATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:4742837 original size:28 final size:28
Alignment explanation
Indices: 4742797--4742852 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
4742787 AAAATATAGG
4742797 GACTAGAAAAGAAGAAATTTTCTTCATT
1 GACTAGAAAAGAAGAAATTTTCTTCATT
4742825 GACTAGAAAAGAAGAAATTTTCTTCATT
1 GACTAGAAAAGAAGAAATTTTCTTCATT
4742853 CTGGCAGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (28 bp):
GACTAGAAAAGAAGAAATTTTCTTCATT
Found at i:4749394 original size:5 final size:5
Alignment explanation
Indices: 4749384--4749415 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
4749374 AGGTTATCAA
4749384 GCTAG GCTAG GCTAG GCTAG GCTAG GCTAG GC
1 GCTAG GCTAG GCTAG GCTAG GCTAG GCTAG GC
4749416 ATAAAAGTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.22, G:0.41, T:0.19
Consensus pattern (5 bp):
GCTAG
Found at i:4752106 original size:42 final size:42
Alignment explanation
Indices: 4752058--4752142 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
4752048 CATGAGTACC
4752058 TAAATTGCAAGCTTTTTATGTTAAGAGCCTGAAATAAAAACA
1 TAAATTGCAAGCTTTTTATGTTAAGAGCCTGAAATAAAAACA
4752100 TAAATTGCAAGCTTTTTATGTTAAGAGCCTGAAATAAAAACA
1 TAAATTGCAAGCTTTTTATGTTAAGAGCCTGAAATAAAAACA
4752142 T
1 T
4752143 TTAATAGTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (42 bp):
TAAATTGCAAGCTTTTTATGTTAAGAGCCTGAAATAAAAACA
Found at i:4758878 original size:188 final size:188
Alignment explanation
Indices: 4758556--4758905 Score: 477
Period size: 188 Copynumber: 1.9 Consensus size: 188
4758546 AAATGAAGAA
* * * ** *
4758556 GGTTTAAGGAACGCCCACAAACTACATTTAAGTTAGAAATTTAGTAACTCGGGCTTAAGCACCAA
1 GGTTCAAGGAACGCCCACAAACTACATTTAAGTTAGAAATTTAGCAACCCAAGCGTAAGCACCAA
** * * *
4758621 TGCATGCAGGAAGCATCTCAAAGTAAAGAAAAAAGCTAGAAGTCTGAACAGCATACAGAGGCAAT
66 TGCAAACAAGAAGCATCTCAAAGTAAAGAAAAAAGCTACAAGTCAGAACAGCATACAGAGGCAAT
*
4758686 TAACCTAATTTATGCAAAAGTACCACATGAAGATAGAAATACCAGTGTTGCTATCTTG
131 TAACCTAATTTATGCAAAAATACCACATGAAGATAGAAATACCAGTGTTGCTATCTTG
* * * * **
4758744 GGTTCAAGGAACTCCCACAAACTACATTTCAGTTATAAATTTAGCAACCCAAGCGTAAGTACCGG
1 GGTTCAAGGAACGCCCACAAACTACATTTAAGTTAGAAATTTAGCAACCCAAGCGTAAGCACCAA
* * * *
4758809 TGCAAACAAGCAGCATCTCAAAGTAAGGCAAAAAGCTACAAGTCCAG-GCAGCATACAGAGGCAA
66 TGCAAACAAGAAGCATCTCAAAGTAAAGAAAAAAGCTACAAGT-CAGAACAGCATACAGAGGCAA
*
4758873 TTAACCTAATTTATGCAAAAATCCCACATGAAG
130 TTAACCTAATTTATGCAAAAATACCACATGAAG
4758906 GCAGGAAATG
Statistics
Matches: 138, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
188 136 0.99
189 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (188 bp):
GGTTCAAGGAACGCCCACAAACTACATTTAAGTTAGAAATTTAGCAACCCAAGCGTAAGCACCAA
TGCAAACAAGAAGCATCTCAAAGTAAAGAAAAAAGCTACAAGTCAGAACAGCATACAGAGGCAAT
TAACCTAATTTATGCAAAAATACCACATGAAGATAGAAATACCAGTGTTGCTATCTTG
Found at i:4768000 original size:6 final size:7
Alignment explanation
Indices: 4767980--4768004 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
4767970 TTTTGATACT
4767980 AATAAAA
1 AATAAAA
4767987 AATAAAA
1 AATAAAA
4767994 AATAAAA
1 AATAAAA
4768001 AATA
1 AATA
4768005 CCATAGTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
AATAAAA
Found at i:4775197 original size:14 final size:14
Alignment explanation
Indices: 4775171--4775207 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
4775161 CTAAAAAATA
4775171 CTATAAA-CATTTT
1 CTATAAATCATTTT
*
4775184 TTATAAATCATTTT
1 CTATAAATCATTTT
4775198 CTATAAATCA
1 CTATAAATCA
4775208 AATACACCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 6 0.29
14 15 0.71
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.46
Consensus pattern (14 bp):
CTATAAATCATTTT
Found at i:4777339 original size:30 final size:28
Alignment explanation
Indices: 4777290--4777346 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 28
4777280 GACATGTGAT
4777290 AAAAATTTAAAAATACAAATAAAAATAA
1 AAAAATTTAAAAATACAAATAAAAATAA
* *
4777318 AAAATATTTAAAATTTACAAATATAAATA
1 AAAA-ATTTAAAA-ATACAAATAAAAATA
4777347 TATAATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.16
29 8 0.32
30 13 0.52
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (28 bp):
AAAAATTTAAAAATACAAATAAAAATAA
Found at i:4777705 original size:23 final size:24
Alignment explanation
Indices: 4777670--4777714 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
4777660 AGTTTATTTT
4777670 TCATAAATAAATTCTA-TTTTTCG
1 TCATAAATAAATTCTAGTTTTTCG
* * *
4777693 TCATAACTTAATTTTAGTTTTT
1 TCATAAATAAATTCTAGTTTTT
4777715 TACCCATAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 13 0.72
24 5 0.28
ACGTcount: A:0.31, C:0.11, G:0.04, T:0.53
Consensus pattern (24 bp):
TCATAAATAAATTCTAGTTTTTCG
Found at i:4779997 original size:3 final size:3
Alignment explanation
Indices: 4779989--4780023 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
4779979 TCTTATTGCC
*
4779989 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
4780024 ATATAGTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:4780006 original size:12 final size:12
Alignment explanation
Indices: 4779970--4780022 Score: 63
Period size: 12 Copynumber: 4.4 Consensus size: 12
4779960 ATTTTCACTG
*
4779970 TTATTGTTA-TC
1 TTATTGTTATTA
*
4779981 TTATTGCCTATTA
1 TTATTG-TTATTA
4779994 TTATTGTTATTA
1 TTATTGTTATTA
*
4780006 TTATTATTATTA
1 TTATTGTTATTA
4780018 TTATT
1 TTATT
4780023 AATATAGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
11 6 0.17
12 23 0.64
13 7 0.19
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.64
Consensus pattern (12 bp):
TTATTGTTATTA
Found at i:4782581 original size:3 final size:3
Alignment explanation
Indices: 4782573--4782617 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
4782563 ACTTGTAATA
4782573 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4782618 GCACGTGTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:4782816 original size:10 final size:10
Alignment explanation
Indices: 4782798--4782828 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
4782788 ATCTTACTAA
*
4782798 TATAATATTT
1 TATATTATTT
4782808 TATATTATTT
1 TATATTATTT
4782818 TATATTATTT
1 TATATTATTT
4782828 T
1 T
4782829 GTATAGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TATATTATTT
Found at i:4786731 original size:24 final size:22
Alignment explanation
Indices: 4786704--4786761 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
4786694 AATTTTAATA
*
4786704 TTTATTTATATGGTTTTAATCCTT
1 TTTATTTATAT--TTTTAATCATT
*
4786728 TTTAATTATTATTTTTAATCATT
1 TTTATTTA-TATTTTTAATCATT
4786751 TTTATATTATA
1 TTTAT-TTATA
4786762 AATATATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 16 0.55
24 10 0.34
25 3 0.10
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (22 bp):
TTTATTTATATTTTTAATCATT
Found at i:4796542 original size:25 final size:25
Alignment explanation
Indices: 4796513--4796561 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
4796503 TTAAGACTCC
*
4796513 CGAGAATGATGTTGCTCGACTCTAA
1 CGAGAATGATATTGCTCGACTCTAA
4796538 CGAGAATGATATTGCTCGACTCTA
1 CGAGAATGATATTGCTCGACTCTA
4796562 TCAAGCGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (25 bp):
CGAGAATGATATTGCTCGACTCTAA
Found at i:4802895 original size:21 final size:22
Alignment explanation
Indices: 4802866--4802912 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
4802856 CAGAAGGAGT
*
4802866 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
4802888 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
4802909 GAGT
1 GAGT
4802913 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:4805074 original size:63 final size:63
Alignment explanation
Indices: 4804975--4805223 Score: 444
Period size: 63 Copynumber: 4.0 Consensus size: 63
4804965 GCAAACAGCA
* * * *
4804975 AATACAGAACCTTCTCGTTTATTTGATGACCTCTTACTGTGCAGATGGTTCCTTTCTCTCTTT
1 AATACAGAACCTTCTGGTTTGTTTGATGACCTCTTACTGTGCATATGGTTCCTTTCTCTCATT
4805038 AATACAGAACCTTCTGGTTTGTTTGATGACCTCTTACTGTGCATATGGTTCCTTTCTCTCATT
1 AATACAGAACCTTCTGGTTTGTTTGATGACCTCTTACTGTGCATATGGTTCCTTTCTCTCATT
4805101 AATACAGAACCTTCTGGTTTGTTTGATGACCTCTTACTGTGCATATGGTTCCTTTCTCTCATT
1 AATACAGAACCTTCTGGTTTGTTTGATGACCTCTTACTGTGCATATGGTTCCTTTCTCTCATT
* *
4805164 AATACAGAACCTTCTGGTTTGTTTGATGACCTCTTACTGTGCATAAGGTTCCTTTGTCTC
1 AATACAGAACCTTCTGGTTTGTTTGATGACCTCTTACTGTGCATATGGTTCCTTTCTCTC
4805224 TTTCTATTAT
Statistics
Matches: 180, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 180 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.42
Consensus pattern (63 bp):
AATACAGAACCTTCTGGTTTGTTTGATGACCTCTTACTGTGCATATGGTTCCTTTCTCTCATT
Found at i:4816440 original size:16 final size:16
Alignment explanation
Indices: 4816415--4816445 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4816405 AAAAATATAT
4816415 ATTTTCAATTTTTAAA
1 ATTTTCAATTTTTAAA
*
4816431 ATTTTTAATTTTTAA
1 ATTTTCAATTTTTAA
4816446 GAACCAAGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTTCAATTTTTAAA
Found at i:4827708 original size:17 final size:17
Alignment explanation
Indices: 4827686--4827721 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
4827676 GAAACAGTGA
4827686 AAGGCGAAAACTAGAAG
1 AAGGCGAAAACTAGAAG
4827703 AAGGCGAAAACTAGAAG
1 AAGGCGAAAACTAGAAG
4827720 AA
1 AA
4827722 AATACTCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.56, C:0.11, G:0.28, T:0.06
Consensus pattern (17 bp):
AAGGCGAAAACTAGAAG
Found at i:4833869 original size:18 final size:18
Alignment explanation
Indices: 4833846--4833887 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
4833836 TATTTTGTTA
4833846 AAAATTA-AATATATAATT
1 AAAATTACAATA-ATAATT
*
4833864 AAAATTACAATAATATTT
1 AAAATTACAATAATAATT
4833882 AAAATT
1 AAAATT
4833888 TAAAAAGCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTACAATAATAATT
Found at i:4834929 original size:14 final size:13
Alignment explanation
Indices: 4834914--4834974 Score: 65
Period size: 13 Copynumber: 4.8 Consensus size: 13
4834904 ATACACATCA
4834914 AAATATAAAAATC
1 AAATATAAAAATC
* * *
4834927 AAACATACAAATA
1 AAATATAAAAATC
4834940 AAATATAAAAAATC
1 AAATAT-AAAAATC
4834954 --ATATAAAAAT-
1 AAATATAAAAATC
4834964 AAATATAAAAA
1 AAATATAAAAA
4834975 ATAAAATCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
11 6 0.15
12 13 0.33
13 15 0.38
14 5 0.13
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATATAAAAATC
Found at i:4835230 original size:25 final size:25
Alignment explanation
Indices: 4835198--4835246 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
4835188 GCTGAACTTT
*
4835198 TTACAACTCAATGATGATTCAATAC
1 TTACAACTCAATGATGATCCAATAC
* *
4835223 TTACAACTCAGTGGTGATCCAATA
1 TTACAACTCAATGATGATCCAATA
4835247 TATTTTAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (25 bp):
TTACAACTCAATGATGATCCAATAC
Found at i:4835322 original size:15 final size:15
Alignment explanation
Indices: 4835302--4835332 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4835292 TCAGATACAA
4835302 ATATATTTATATAAT
1 ATATATTTATATAAT
*
4835317 ATATATTTATGTAAT
1 ATATATTTATATAAT
4835332 A
1 A
4835333 ATTCGAGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (15 bp):
ATATATTTATATAAT
Found at i:4836786 original size:60 final size:62
Alignment explanation
Indices: 4836702--4836834 Score: 200
Period size: 60 Copynumber: 2.2 Consensus size: 62
4836692 ATACTAAACT
* * *
4836702 AAACAC-AACAATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA-C
1 AAACACAAAAAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTATA
*
4836762 AAACACAAAAAATTT-TAACATAATCCTAATTTACTAATAAATTAATTTTAAAATAATTATA
1 AAACACAAAAAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTATA
*
4836823 AAAAACAAAAAA
1 AAACACAAAAAA
4836835 AATTACATTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
60 48 0.73
61 18 0.27
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.32
Consensus pattern (62 bp):
AAACACAAAAAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTATA
Found at i:4839839 original size:279 final size:279
Alignment explanation
Indices: 4839339--4839893 Score: 1074
Period size: 279 Copynumber: 2.0 Consensus size: 279
4839329 ATTTGGATTT
4839339 CAACTTTTTCTCATAAATAATTCTAGAAGAAATAAATTTTCAAAAACTTTTAAATTATTTTTACT
1 CAACTTTTTCTCATAAATAATTCTAGAAGAAATAAATTTTCAAAAACTTTTAAATTATTTTTACT
*
4839404 ACTTTAAATATGAAAATTTATTTTATATCATAAATGTTGAAACCTTTTTTTGAAAACGGGAATCG
66 ACTTTAAATATGAAAATTTATTTTATATCATAAATGTTGAAACCCTTTTTTGAAAACGGGAATCG
4839469 ACTTTTGAAAACGAAAGTTGAGAGTCGCCACCAAACCCTTTTTTGAGGTGCAATTGGGCCACCTT
131 ACTTTTGAAAACGAAAGTTGAGAGTCGCCACCAAACCCTTTTTTGAGGTGCAATTGGGCCACCTT
*
4839534 ATAAAACATTTTGGTCCACAAATTTTAAGAAAATCGGTTTGGGAGTCGGTTACGTACGAGGAAGG
196 ATAAAACATTTTGGTCCACAAATTTTAAGAAAACCGGTTTGGGAGTCGGTTACGTACGAGGAAGG
*
4839599 ATTAGCACCTTCGACATGC
261 ATTAGCACCCTCGACATGC
4839618 CAACTTTTTCTCATAAATAATTCTAGAAGAAATAAATTTTCAAAAACTTTTAAATTATTTTTACT
1 CAACTTTTTCTCATAAATAATTCTAGAAGAAATAAATTTTCAAAAACTTTTAAATTATTTTTACT
4839683 ACTTTAAATATGAAAATTTATTTTATATCATAAATGTTGAAACCCTTTTTTGAAAACGGGAATCG
66 ACTTTAAATATGAAAATTTATTTTATATCATAAATGTTGAAACCCTTTTTTGAAAACGGGAATCG
*
4839748 ACTTTTGAAAACGAAAGTTGAGAGTCGCCACCAATCCCTTTTTTGAGGTGCAATTGGGCCACCTT
131 ACTTTTGAAAACGAAAGTTGAGAGTCGCCACCAAACCCTTTTTTGAGGTGCAATTGGGCCACCTT
4839813 ATAAAACATTTTGGTCCACAAATTTTAAGAAAACCGGTTTGGGAGTCGGTTACGTACGAGGAAGG
196 ATAAAACATTTTGGTCCACAAATTTTAAGAAAACCGGTTTGGGAGTCGGTTACGTACGAGGAAGG
4839878 ATTAGCACCCTCGACA
261 ATTAGCACCCTCGACA
4839894 CGCCCAAAAT
Statistics
Matches: 272, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
279 272 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
Consensus pattern (279 bp):
CAACTTTTTCTCATAAATAATTCTAGAAGAAATAAATTTTCAAAAACTTTTAAATTATTTTTACT
ACTTTAAATATGAAAATTTATTTTATATCATAAATGTTGAAACCCTTTTTTGAAAACGGGAATCG
ACTTTTGAAAACGAAAGTTGAGAGTCGCCACCAAACCCTTTTTTGAGGTGCAATTGGGCCACCTT
ATAAAACATTTTGGTCCACAAATTTTAAGAAAACCGGTTTGGGAGTCGGTTACGTACGAGGAAGG
ATTAGCACCCTCGACATGC
Found at i:4840687 original size:22 final size:23
Alignment explanation
Indices: 4840649--4840693 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
4840639 ATACAAGTAG
*
4840649 AATAATATGGAATCAA-TAATAA
1 AATAATATGGAAACAATTAATAA
4840671 AATATATAT-GAAACAATTAATAA
1 AATA-ATATGGAAACAATTAATAA
4840694 CGTTGTGCGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (23 bp):
AATAATATGGAAACAATTAATAA
Found at i:4840867 original size:3 final size:3
Alignment explanation
Indices: 4840859--4840964 Score: 53
Period size: 3 Copynumber: 36.7 Consensus size: 3
4840849 ACGAACTATT
* *
4840859 ATA ATA ATA A-A AT- ATA ATGA ATA ATA TTA GTA ATA A-A ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
4840902 TTA ACTA TTA ACA GTA A-A GT- ATA ATA A-A ATA GTA ATA ATA AAA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
4840945 ATA ATA ATA CTA AAA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
4840965 TAATTTTATG
Statistics
Matches: 74, Mismatches: 21, Indels: 16
0.67 0.19 0.14
Matches are distributed among these distances:
2 10 0.14
3 59 0.80
4 5 0.07
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:4840947 original size:15 final size:15
Alignment explanation
Indices: 4840922--4840964 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
4840912 ACAGTAAAGT
*
4840922 ATAAT-AAAATAGTA
1 ATAATAAAAATAATA
4840936 ATAATAAAAATAATA
1 ATAATAAAAATAATA
*
4840951 ATACTAAAAATAAT
1 ATAATAAAAATAAT
4840965 TAATTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (15 bp):
ATAATAAAAATAATA
Found at i:4842398 original size:44 final size:43
Alignment explanation
Indices: 4842348--4842537 Score: 174
Period size: 44 Copynumber: 4.3 Consensus size: 43
4842338 ATCTGCTCCA
*
4842348 CTATTGCTTACGGAGATAAGATCTGTAATTTTCAGCTTGTTACC
1 CTATTGCTTAGGGAGATAAGATCTGTAATTTTC-GCTTGTTACC
* * * * *
4842392 TTATTGCTTAGGGAGTTAA-AGCCTGCAATCTTCAGCTTGTTACC
1 CTATTGCTTAGGGAGATAAGA-TCTGTAATTTTC-GCTTGTTACC
* * * **
4842436 CTATTGCTTAGGGAGTTAAAGCCTACTG---TTTTCGATT-TGCCC
1 CTATTGCTTAGGGAGAT-AAG-AT-CTGTAATTTTCGCTTGTTACC
4842478 CATTATTGCTTAGGGAGATAAGATCTGTAATTTTCGCTTGTTACC
1 C--TATTGCTTAGGGAGATAAGATCTGTAATTTTCGCTTGTTACC
4842523 CTATTGCTTAGGGAG
1 CTATTGCTTAGGGAG
4842538 TTAAAGCCTG
Statistics
Matches: 117, Mismatches: 18, Indels: 23
0.74 0.11 0.15
Matches are distributed among these distances:
41 3 0.03
42 5 0.04
43 21 0.18
44 79 0.68
45 6 0.05
47 3 0.03
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (43 bp):
CTATTGCTTAGGGAGATAAGATCTGTAATTTTCGCTTGTTACC
Found at i:4843175 original size:17 final size:18
Alignment explanation
Indices: 4843142--4843200 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
4843132 ATTTAAAAAA
4843142 AAATTATATAAATATA-TT
1 AAATTA-ATAAATATATTT
4843160 AAATATAATAAA-ATATTT
1 AAAT-TAATAAATATATTT
*
4843178 AAATTAATTAATGATATTAT
1 AAATTAATAAAT-ATATT-T
4843198 AAA
1 AAA
4843201 AATTGAGGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
17 9 0.26
18 15 0.43
19 7 0.20
20 4 0.11
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
AAATTAATAAATATATTT
Found at i:4843421 original size:31 final size:31
Alignment explanation
Indices: 4843386--4843446 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
4843376 AATTAATTAG
*
4843386 ATCAACAATTTTATTTA-AAATCAATCACTAT
1 ATCAACAATTTTA-ATAGAAATCAATCACTAT
* *
4843417 ATCAATAATTTTAATAGGAATCAATCACTA
1 ATCAACAATTTTAATAGAAATCAATCACTA
4843447 AAAATTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (31 bp):
ATCAACAATTTTAATAGAAATCAATCACTAT
Found at i:4844315 original size:22 final size:22
Alignment explanation
Indices: 4844290--4844333 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4844280 TAGTCTTATA
4844290 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
4844312 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
4844334 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:4844378 original size:15 final size:16
Alignment explanation
Indices: 4844357--4844392 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
4844347 AATTTTATTT
4844357 TAATAATAAATTTAAA
1 TAATAATAAATTTAAA
*
4844373 -AATAATAATTTTAAA
1 TAATAATAAATTTAAA
4844388 TAATA
1 TAATA
4844393 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAATAATAAATTTAAA
Found at i:4844445 original size:15 final size:15
Alignment explanation
Indices: 4844425--4844480 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
4844415 ATTCAATATT
4844425 AATATTTTAATAATA
1 AATATTTTAATAATA
*
4844440 AATATTTATTATAATTATA
1 AATA--T-TT-TAATAATA
*
4844459 AATATATTAATAATA
1 AATATTTTAATAATA
4844474 AAT-TTTT
1 AATATTTT
4844481 TGTAGTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
14 3 0.09
15 14 0.42
16 1 0.03
17 2 0.06
18 2 0.06
19 11 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:4844454 original size:19 final size:19
Alignment explanation
Indices: 4844427--4844463 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4844417 TCAATATTAA
*
4844427 TATTTTAATAATAAATATT
1 TATTATAATAATAAATATT
*
4844446 TATTATAATTATAAATAT
1 TATTATAATAATAAATAT
4844464 ATTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATAATAATAAATATT
Found at i:4848939 original size:15 final size:15
Alignment explanation
Indices: 4848919--4848968 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
4848909 AGAACATGTT
*
4848919 AACGTAAGTGACTAA
1 AACGTAAGTGATTAA
*
4848934 AACGTAA-T-ATTCA
1 AACGTAAGTGATTAA
4848947 AACGTAAGTGATTAA
1 AACGTAAGTGATTAA
*
4848962 AATGTAA
1 AACGTAA
4848969 TATGAGGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 10 0.34
14 2 0.07
15 17 0.59
ACGTcount: A:0.48, C:0.10, G:0.16, T:0.26
Consensus pattern (15 bp):
AACGTAAGTGATTAA
Found at i:4850139 original size:23 final size:21
Alignment explanation
Indices: 4850109--4850156 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
4850099 TTATAAAATT
4850109 AAATT-AAATTATGAAAACTATA
1 AAATTAAAATTAT-AAAACTA-A
*
4850131 AAATATAAAATTCTAAAACTAA
1 AAAT-TAAAATTATAAAACTAA
4850153 AAAT
1 AAAT
4850157 GATTTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 9 0.39
23 8 0.35
24 6 0.26
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.29
Consensus pattern (21 bp):
AAATTAAAATTATAAAACTAA
Found at i:4851003 original size:7 final size:7
Alignment explanation
Indices: 4850991--4851024 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
4850981 CTTGAGTGCT
4850991 CAAAATA
1 CAAAATA
4850998 CAAAATA
1 CAAAATA
4851005 CAAAATA
1 CAAAATA
4851012 CAAAATA
1 CAAAATA
4851019 CAAAAT
1 CAAAAT
4851025 CAATATATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.71, C:0.15, G:0.00, T:0.15
Consensus pattern (7 bp):
CAAAATA
Found at i:4858581 original size:17 final size:18
Alignment explanation
Indices: 4858559--4858592 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4858549 TATAGTATAG
4858559 ATAATT-AAATATGATAT
1 ATAATTAAAATATGATAT
4858576 ATAATTAAAATATGATA
1 ATAATTAAAATATGATA
4858593 CAAAGAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
ATAATTAAAATATGATAT
Found at i:4860880 original size:31 final size:29
Alignment explanation
Indices: 4860829--4860891 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 29
4860819 ACTTAAAAGG
*
4860829 AAAAATTTAATAACCTAATAAATTGAATA
1 AAAAATTTAATAACCTAATAAATTAAATA
*
4860858 AAAAATTATGAATAA-CTCAATAATTTAAATA
1 AAAAATT-T-AATAACCT-AATAAATTAAATA
4860889 AAA
1 AAA
4860892 TTTTTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 7 0.24
30 3 0.10
31 19 0.66
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.30
Consensus pattern (29 bp):
AAAAATTTAATAACCTAATAAATTAAATA
Found at i:4863772 original size:15 final size:15
Alignment explanation
Indices: 4863752--4863799 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
4863742 TTTATGGAAA
4863752 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
4863767 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
4863781 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
4863797 ATC
1 ATC
4863800 GAGATATTGG
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 5 0.20
15 15 0.60
16 5 0.20
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.25
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:4871688 original size:38 final size:38
Alignment explanation
Indices: 4871622--4871694 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
4871612 ACCAGAATGG
*
4871622 CACCCAGTGCCTCATCGGATAGTTCGAAGCAAAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGCAAAGTTGA
* * *
4871660 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAAAGT
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGCAAAGT
4871695 GGTGCCTAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
38 27 0.90
39 3 0.10
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGCAAAGTTGA
Found at i:4872563 original size:10 final size:10
Alignment explanation
Indices: 4872548--4872572 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4872538 TTATCACATA
4872548 AAAATTTTAT
1 AAAATTTTAT
4872558 AAAATTTTAT
1 AAAATTTTAT
4872568 AAAAT
1 AAAAT
4872573 AATTATGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
AAAATTTTAT
Found at i:4872977 original size:15 final size:16
Alignment explanation
Indices: 4872959--4872991 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
4872949 ATTACAATTG
4872959 TACAAATATA-ATTTT
1 TACAAATATATATTTT
*
4872974 TACACATATATATTTT
1 TACAAATATATATTTT
4872990 TA
1 TA
4872992 TTGCCATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (16 bp):
TACAAATATATATTTT
Found at i:4874449 original size:31 final size:30
Alignment explanation
Indices: 4874414--4874479 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
4874404 CTTCCTGCAT
4874414 TAAAATCCAACC-AAATACAACAAATATAGCA
1 TAAAATCCAACCAAAATAC--CAAATATAGCA
* * *
4874445 TAAAATGCAGCCAAAATACCAAATTTAGCA
1 TAAAATCCAACCAAAATACCAAATATAGCA
4874475 TAAAA
1 TAAAA
4874480 AAATACAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 15 0.48
31 10 0.32
32 6 0.19
ACGTcount: A:0.56, C:0.20, G:0.06, T:0.18
Consensus pattern (30 bp):
TAAAATCCAACCAAAATACCAAATATAGCA
Found at i:4874782 original size:24 final size:21
Alignment explanation
Indices: 4874715--4874776 Score: 106
Period size: 21 Copynumber: 3.0 Consensus size: 21
4874705 TTCCTATGCT
4874715 CTGCCTCCCTCGCTGCTGCCG
1 CTGCCTCCCTCGCTGCTGCCG
*
4874736 TTGCCTCCCTCGCTGCTGCCG
1 CTGCCTCCCTCGCTGCTGCCG
*
4874757 CTGCCTCCCTCTCTGCTGCC
1 CTGCCTCCCTCGCTGCTGCC
4874777 TCCGCTCTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.00, C:0.52, G:0.21, T:0.27
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCTGCCG
Found at i:4875213 original size:13 final size:14
Alignment explanation
Indices: 4875188--4875216 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4875178 TGATGAATTG
4875188 AATTAAACAATTAT
1 AATTAAACAATTAT
4875202 AATTAAAC-ATTAT
1 AATTAAACAATTAT
4875215 AA
1 AA
4875217 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:4875421 original size:16 final size:17
Alignment explanation
Indices: 4875384--4875422 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
4875374 AAAATATTAT
*
4875384 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
4875401 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
4875417 TTAATA
1 TTAATA
4875423 AAATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:4880435 original size:9 final size:9
Alignment explanation
Indices: 4880421--4880610 Score: 107
Period size: 9 Copynumber: 20.6 Consensus size: 9
4880411 TATTTAAGTA
4880421 TTATGTAAG
1 TTATGTAAG
4880430 TTATGTAAG
1 TTATGTAAG
*
4880439 TTATGATATG
1 TTATG-TAAG
* * *
4880449 ATATAT-AT
1 TTATGTAAG
*
4880457 TTATGTAAA
1 TTATGTAAG
* *
4880466 TTATAT-AT
1 TTATGTAAG
*
4880474 TTATCTAAG
1 TTATGTAAG
*
4880483 TTATATAAG
1 TTATGTAAG
4880492 TTATGTAAG
1 TTATGTAAG
*
4880501 TTATGTAAA
1 TTATGTAAG
*
4880510 TTATGATATAAAA
1 TTATG---T-AAG
*
4880523 TATATTTAAG
1 T-TATGTAAG
4880533 TATTATGTAAG
1 --TTATGTAAG
4880544 TTATGTAAG
1 TTATGTAAG
* *
4880553 TTATAT-AT
1 TTATGTAAG
*
4880561 TTATCTAAG
1 TTATGTAAG
*
4880570 TTATATAAG
1 TTATGTAAG
*
4880579 TTATGTATG
1 TTATGTAAG
*
4880588 TTTTGTAAG
1 TTATGTAAG
* *
4880597 TTATATAAA
1 TTATGTAAG
4880606 TTATG
1 TTATG
4880611 ACATCAAATA
Statistics
Matches: 139, Mismatches: 31, Indels: 22
0.72 0.16 0.11
Matches are distributed among these distances:
8 16 0.12
9 98 0.71
10 8 0.06
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:4880503 original size:71 final size:69
Alignment explanation
Indices: 4880421--4880587 Score: 203
Period size: 71 Copynumber: 2.4 Consensus size: 69
4880411 TATTTAAGTA
* * *
4880421 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTT
1 TTATGTAAGTTATGTAAGTTATGATATGAAATATATTTAAGT--ATTATATAAGTTATCTAAGTT
4880485 ATATAAG
64 ATAT-AG
* * * *
4880492 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTATGATATGAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
*
4880557 ATAT
66 ATAG
* *
4880561 TTATCTAAGTTATATAAGTTATG-TATG
1 TTATGTAAGTTATGTAAGTTATGATATG
4880588 TTTTGTAAGT
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
68 3 0.04
69 27 0.33
70 15 0.18
71 38 0.46
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (69 bp):
TTATGTAAGTTATGTAAGTTATGATATGAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
ATAG
Found at i:4880569 original size:26 final size:27
Alignment explanation
Indices: 4880421--4880609 Score: 123
Period size: 26 Copynumber: 6.8 Consensus size: 27
4880411 TATTTAAGTA
*
4880421 TTATGTAAGTTATGTAAGTTATGATATG
1 TTATGTAAGTTATATAAGTTAT-ATATG
* * * * *
4880449 ATATAT-ATTTATGTAAATTATATAT-
1 TTATGTAAGTTATATAAGTTATATATG
* * *
4880474 TTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATATATG
* * * *
4880501 TTATGTAAATTATGATATAAAATATATTTAAGTA
1 TTATGT-AAGT-T-ATAT-AAGT-TATAT-A-TG
*
4880535 TTATGTAAGTTATGTAAGTTATATAT-
1 TTATGTAAGTTATATAAGTTATATATG
* *
4880561 TTATCTAAGTTATATAAGTTATGTATG
1 TTATGTAAGTTATATAAGTTATATATG
* *
4880588 TTTTGTAAGTTATATAAATTAT
1 TTATGTAAGTTATATAAGTTAT
4880610 GACATCAAAT
Statistics
Matches: 124, Mismatches: 27, Indels: 21
0.72 0.16 0.12
Matches are distributed among these distances:
25 4 0.03
26 41 0.33
27 38 0.31
28 8 0.06
29 5 0.04
30 7 0.06
31 6 0.05
32 5 0.04
33 4 0.03
34 6 0.05
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (27 bp):
TTATGTAAGTTATATAAGTTATATATG
Found at i:4880597 original size:114 final size:114
Alignment explanation
Indices: 4880397--4880610 Score: 297
Period size: 114 Copynumber: 1.9 Consensus size: 114
4880387 ACTAGTTATG
* * * *
4880397 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
*
4880462 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
4880511 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * * *
4880574 ATAAGTTATGTATGTTTTGTAAGTTATATAAATTATG
65 ATAAATTATATAT-TTATCTAAGTTATATAAATTATG
4880611 ACATCAAATA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
112 4 0.05
113 19 0.22
114 64 0.74
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:4880636 original size:48 final size:49
Alignment explanation
Indices: 4880492--4880637 Score: 135
Period size: 52 Copynumber: 3.0 Consensus size: 49
4880482 GTTATATAAG
* *
4880492 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAA
1 TTATGTAAGTTATATAAATTATGACAT-AAATATATTTAAGTATTATGT-A
* * *
4880543 GTTATGTAAGTTATAT-ATTTAT--C-TAAGT-TATATAAGTTATGTATGT-
1 -TTATGTAAGTTATATAAATTATGACATAAATATATTTAAG-TAT-TATGTA
*
4880589 TT-TGTAAGTTATATAAATTATGACATCAAATATATTTATGTATTATGTA
1 TTATGTAAGTTATATAAATTATGACAT-AAATATATTTAAGTATTATGTA
4880638 AGTTTTTTAT
Statistics
Matches: 76, Mismatches: 9, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
44 12 0.16
45 7 0.09
46 7 0.09
47 7 0.09
48 12 0.16
49 6 0.08
50 6 0.08
51 5 0.07
52 14 0.18
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.47
Consensus pattern (49 bp):
TTATGTAAGTTATATAAATTATGACATAAATATATTTAAGTATTATGTA
Found at i:4880649 original size:87 final size:87
Alignment explanation
Indices: 4880457--4880641 Score: 225
Period size: 87 Copynumber: 2.1 Consensus size: 87
4880447 TGATATATAT
*
4880457 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
* ** *
4880522 ATATATTTAAGTATTATGTAAG
66 ATACATCAAAATATTATGTAAG
* * *
4880544 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTATGTTTTGTAAGTTAT-ATA-AAT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAA-
*
4880607 TATGACATCAAATATATTTATGT-A-
65 AAT-ACATCAAA-ATA-TTATGTAAG
4880631 TTATGTAAGTT
1 TTATGTAAGTT
4880642 TTTTATTTCA
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
85 2 0.02
86 5 0.06
87 69 0.81
88 3 0.04
89 6 0.07
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATACATCAAAATATTATGTAAG
Found at i:4880735 original size:15 final size:15
Alignment explanation
Indices: 4880715--4880770 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
4880705 AAGTAGCGGG
4880715 ATTAAATAATATTTA
1 ATTAAATAATATTTA
4880730 ATTAAATAATATTT-
1 ATTAAATAATATTTA
4880744 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
4880759 ATTAAGTAATAT
1 ATTAAATAATAT
4880771 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:4882229 original size:14 final size:13
Alignment explanation
Indices: 4882210--4882239 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
4882200 CAATATAATT
4882210 TTACTTCATATATA
1 TTACTTCATATA-A
4882224 TTACTTCATATAA
1 TTACTTCATATAA
4882237 TTA
1 TTA
4882240 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:4883966 original size:15 final size:16
Alignment explanation
Indices: 4883946--4883975 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4883936 AAAGGTTATA
4883946 CACTG-AAAACTCATG
1 CACTGAAAAACTCATG
4883961 CACTGAAAAACTCAT
1 CACTGAAAAACTCAT
4883976 TCATAACTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20
Consensus pattern (16 bp):
CACTGAAAAACTCATG
Found at i:4886376 original size:73 final size:73
Alignment explanation
Indices: 4886280--4886429 Score: 194
Period size: 73 Copynumber: 2.1 Consensus size: 73
4886270 ATCCCATTAA
* * * * *
4886280 CCCTTAAACTCCTAAACCCTAAACCATTAACCCTTAATCCCTAAAATTTAAACACTAAACCTTAA
1 CCCTTAAACTCCCAAACCCTAAACCATAAACCCGTAATCCATAAAATTTAAACACTAAACCCTAA
4886345 ACAATATC
66 ACAATATC
* * **
4886353 CCCTT-AACTCCCAAACCCATAAACCCTAAACCCGTAATCCATAAACTTTGTACACTAAACCCTA
1 CCCTTAAACTCCCAAACCC-TAAACCATAAACCCGTAATCCATAAAATTTAAACACTAAACCCTA
*
4886417 AACTATATC
65 AACAATATC
4886426 CCCT
1 CCCT
4886430 CAACCCCTTA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
72 12 0.18
73 54 0.82
ACGTcount: A:0.39, C:0.35, G:0.01, T:0.25
Consensus pattern (73 bp):
CCCTTAAACTCCCAAACCCTAAACCATAAACCCGTAATCCATAAAATTTAAACACTAAACCCTAA
ACAATATC
Found at i:4886510 original size:22 final size:22
Alignment explanation
Indices: 4886485--4886539 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
4886475 AAATATTAAC
* * *
4886485 CCCTAAATCCCTAAACCTTCAG
1 CCCTAAATCCATAAACCATAAG
*
4886507 CCCTTAAA-CCATAAACCATAAT
1 CCC-TAAATCCATAAACCATAAG
4886529 CCCTAAATCCA
1 CCCTAAATCCA
4886540 CAATCAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 4 0.15
22 19 0.70
23 4 0.15
ACGTcount: A:0.38, C:0.38, G:0.02, T:0.22
Consensus pattern (22 bp):
CCCTAAATCCATAAACCATAAG
Found at i:4886688 original size:18 final size:18
Alignment explanation
Indices: 4886661--4886726 Score: 73
Period size: 18 Copynumber: 3.8 Consensus size: 18
4886651 ATTAACTTGT
* *
4886661 CATAATCCATAAATCATG
1 CATAAACCATAAACCATG
4886679 CATAAACCATAAACCAT-
1 CATAAACCATAAACCATG
* *
4886696 -ATATACCCTAAACCATG
1 CATAAACCATAAACCATG
*
4886713 CATAAACCTTAAAC
1 CATAAACCATAAAC
4886727 TATAATAATG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
16 14 0.35
18 26 0.65
ACGTcount: A:0.47, C:0.27, G:0.03, T:0.23
Consensus pattern (18 bp):
CATAAACCATAAACCATG
Found at i:4887695 original size:18 final size:18
Alignment explanation
Indices: 4887672--4887711 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
4887662 TTAAGGTGAT
4887672 AGAATAAAATGTTAATTG
1 AGAATAAAATGTTAATTG
4887690 AGAATAAAATGTTAATTG
1 AGAATAAAATGTTAATTG
4887708 AGAA
1 AGAA
4887712 AAATCAGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.30
Consensus pattern (18 bp):
AGAATAAAATGTTAATTG
Found at i:4890926 original size:52 final size:48
Alignment explanation
Indices: 4890907--4891109 Score: 256
Period size: 46 Copynumber: 4.3 Consensus size: 48
4890897 TGACAAGTGG
* *
4890907 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
4890953 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
4891005 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** * *
4891051 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTAATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
4891097 AAAGTGATAAGTG
1 AAAGTGATAAGTG
4891110 GCTACACTTA
Statistics
Matches: 143, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
46 99 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:4890961 original size:98 final size:98
Alignment explanation
Indices: 4890841--4891109 Score: 448
Period size: 98 Copynumber: 2.7 Consensus size: 98
4890831 TTTGAGTACT
*
4890841 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
4890906 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
4890939 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
4891004 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* * *
4891037 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTAATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
4891102 GATAAGTG
65 GAAAAGTG
4891110 GCTACACTTA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 148 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:4891117 original size:37 final size:37
Alignment explanation
Indices: 4891073--4891218 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
4891063 GATAGCTTTA
* *
4891073 GCTACACTTATCTAATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
4891110 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
4891147 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
4891184 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
4891219 ATCATACGTA
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 88 0.85
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:4902565 original size:25 final size:25
Alignment explanation
Indices: 4902537--4902584 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
4902527 GAAATAAAAG
*
4902537 GGGTTGCTATGTGCTGATTCCCCAA
1 GGGTTGCTAAGTGCTGATTCCCCAA
4902562 GGGTTGCTAAGTGCTGATTCCCC
1 GGGTTGCTAAGTGCTGATTCCCC
4902585 GATTAAGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.15, C:0.25, G:0.29, T:0.31
Consensus pattern (25 bp):
GGGTTGCTAAGTGCTGATTCCCCAA
Found at i:4902606 original size:99 final size:102
Alignment explanation
Indices: 4902360--4902617 Score: 387
Period size: 103 Copynumber: 2.5 Consensus size: 102
4902350 GTACATAAAG
** * *
4902360 GGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCTTTG
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTCTG
* *
4902425 AAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCGA
66 AAA-GTGAAAAGGGGTTGCTATGTGCTGATTCCCCCAA
* *
4902463 GGGTTGCTAAGTGATGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTCTG
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTCTG
4902528 AAA-T-AAAAGGGGTTGCTATGTGCTGATT-CCCCAA
66 AAAGTGAAAAGGGGTTGCTATGTGCTGATTCCCCCAA
* * *
4902562 GGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
4902618 AACAACGGTT
Statistics
Matches: 142, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
99 56 0.39
100 23 0.16
101 1 0.01
103 62 0.44
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (102 bp):
GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTCTG
AAAGTGAAAAGGGGTTGCTATGTGCTGATTCCCCCAA
Found at i:4908500 original size:25 final size:28
Alignment explanation
Indices: 4908448--4908502 Score: 80
Period size: 25 Copynumber: 2.1 Consensus size: 28
4908438 TTCAATATTT
*
4908448 TTGTATGAAAATTGATATGATAGGAAAA
1 TTGTATGAAAATTGATATGATAGAAAAA
4908476 TTGTATGAAAA-T-AT-TGATAGAAAAA
1 TTGTATGAAAATTGATATGATAGAAAAA
4908501 TT
1 TT
4908503 TTACCGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 12 0.46
26 2 0.08
27 1 0.04
28 11 0.42
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (28 bp):
TTGTATGAAAATTGATATGATAGAAAAA
Found at i:4911391 original size:14 final size:14
Alignment explanation
Indices: 4911369--4911420 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
4911359 GTGTCCTTCA
*
4911369 TTTAGGGTTTATAG
1 TTTAAGGTTTATAG
*
4911383 TTTAAGGTTTCA-AA
1 TTTAAGGTTT-ATAG
*
4911397 TTTAAGGTCTATAG
1 TTTAAGGTTTATAG
*
4911411 TTTATGGTTT
1 TTTAAGGTTT
4911421 TAGGGGTTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
13 1 0.03
14 28 0.93
15 1 0.03
ACGTcount: A:0.25, C:0.04, G:0.21, T:0.50
Consensus pattern (14 bp):
TTTAAGGTTTATAG
Found at i:4911931 original size:40 final size:41
Alignment explanation
Indices: 4911833--4911931 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 41
4911823 AATAGTTTAG
* *
4911833 ATCTTTAGCGGCGTTTTTCCAAAAAGCGTCGCTGAAACTCAT
1 ATCTATAGCGGCG-TTTTCCAAAAAGCGCCGCTGAAACTCAT
* * *
4911875 ATCTATTGCAGCGTTTTCTAAAAAGCGCCGCT-AATACTCA-
1 ATCTATAGCGGCGTTTTCCAAAAAGCGCCGCTGAA-ACTCAT
*
4911915 ATCTATAGCGGTGTTTT
1 ATCTATAGCGGCGTTTT
4911932 TGCACAAGCG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 16 0.33
41 22 0.46
42 10 0.21
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (41 bp):
ATCTATAGCGGCGTTTTCCAAAAAGCGCCGCTGAAACTCAT
Found at i:4912074 original size:41 final size:40
Alignment explanation
Indices: 4911994--4912103 Score: 107
Period size: 41 Copynumber: 2.7 Consensus size: 40
4911984 TTTAATTTTT
* **
4911994 TAGCGGCGTTTCTATAAAAACGCCGCTATAGGCCGACCTA
1 TAGCGGCGTTTCTATAAAAACGCCGCTATACGCAAACCTA
* *
4912034 TAGCGGCGCTTTCTA-AAAAATGCCGCTAATACTCAAACCTA
1 TAGCGGCG-TTTCTATAAAAACGCCGCT-ATACGCAAACCTA
* * *
4912075 TAGCTGCGTTTTTGAT-AAAGCGCCGCTAT
1 TAGCGGCGTTTCT-ATAAAAACGCCGCTAT
4912104 TGCCACTGAA
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
40 25 0.44
41 32 0.56
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (40 bp):
TAGCGGCGTTTCTATAAAAACGCCGCTATACGCAAACCTA
Found at i:4912185 original size:154 final size:154
Alignment explanation
Indices: 4911889--4912255 Score: 468
Period size: 154 Copynumber: 2.4 Consensus size: 154
4911879 ATTGCAGCGT
* * * *
4911889 TTTCTAAAAAGCGCCGCTAATACTCAATCTATAGCGGTGTTTTTGCACAAGCGCCGCTATTGCCA
1 TTTCTAAAAAACGCCGCTAATACTCAACCTATAGCGGCGTTTTTGCAAAAGCGCCGCTATTGCCA
* * ** *
4911954 GTGAAGCTCAAAATAAACGACGCTGTTCGATTTAATTTTTTAGCGGCGTTTCTATAAAAACGCCG
66 CTGAAGCTCAAAATAAACGACGCCGTTCGACCTAATCTTTTAGCGGCGTTTCTATAAAAACGCCG
*
4912019 CTATAGGCCGACCTATAGCGGCGC
131 CTATAGGCCGACCTATAGCGGCAC
* *
4912043 TTTCTAAAAAATGCCGCTAATACTCAAACCTATAGCTGCGTTTTTG-ATAAAGCGCCGCTATTGC
1 TTTCTAAAAAACGCCGCTAATACTC-AACCTATAGCGGCGTTTTTGCA-AAAGCGCCGCTATTGC
* * * *
4912107 CACTGAAGCTCACAATAAATGACGCCGTTCG-CCTAATCTTTTAGTGGCGTTTTTATAAAAACGC
64 CACTGAAGCTCAAAATAAACGACGCCGTTCGACCTAATCTTTTAGCGGCGTTTCTATAAAAACGC
* *
4912171 CGCTATATGTCGACCTATAGCGGCAC
129 CGCTATAGGCCGACCTATAGCGGCAC
* * * * ** * *
4912197 TTCCTTAAAAACGCCGCTAATTCTCGATATATAGCGGCGTTTTTTCAAAAACGCCGCTA
1 TTTCTAAAAAACGCCGCTAATACTCAACCTATAGCGGCGTTTTTGCAAAAGCGCCGCTA
4912256 ATACTCAATT
Statistics
Matches: 182, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
153 26 0.14
154 97 0.53
155 59 0.32
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (154 bp):
TTTCTAAAAAACGCCGCTAATACTCAACCTATAGCGGCGTTTTTGCAAAAGCGCCGCTATTGCCA
CTGAAGCTCAAAATAAACGACGCCGTTCGACCTAATCTTTTAGCGGCGTTTCTATAAAAACGCCG
CTATAGGCCGACCTATAGCGGCAC
Found at i:4912230 original size:40 final size:40
Alignment explanation
Indices: 4912162--4912258 Score: 108
Period size: 40 Copynumber: 2.4 Consensus size: 40
4912152 GGCGTTTTTA
* *
4912162 TAAAAACGCCGCT-ATATGTCGACCTATAGCGGCACTTCCT
1 TAAAAACGCCGCTAATATCTCGACATATAGCGGC-CTTCCT
* * **
4912202 TAAAAACGCCGCTAAT-TCTCGATATATAGCGGCGTTTTT
1 TAAAAACGCCGCTAATATCTCGACATATAGCGGCCTTCCT
4912241 TCAAAAACGCCGCTAATA
1 T-AAAAACGCCGCTAATA
4912259 CTCAATTTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
39 4 0.08
40 42 0.88
41 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (40 bp):
TAAAAACGCCGCTAATATCTCGACATATAGCGGCCTTCCT
Found at i:4915595 original size:16 final size:16
Alignment explanation
Indices: 4915574--4915606 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4915564 GAAATATGAC
4915574 AATTAAATCG-ATAAAA
1 AATT-AATCGTATAAAA
4915590 AATTAATCGTATAAAA
1 AATTAATCGTATAAAA
4915606 A
1 A
4915607 TATAATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (16 bp):
AATTAATCGTATAAAA
Found at i:4919192 original size:21 final size:21
Alignment explanation
Indices: 4919168--4919232 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 21
4919158 ATAGAAGAGA
4919168 ATCATGATGGATACATCTAAC
1 ATCATGATGGATACATCTAAC
* *
4919189 ATCA--ATGAGATAGAAC-AGA-
1 ATCATGATG-GATACATCTA-AC
4919208 ATCATGATGGATACATCTAAC
1 ATCATGATGGATACATCTAAC
4919229 ATCA
1 ATCA
4919233 ATAAAGGTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
19 8 0.24
20 14 0.41
21 12 0.35
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (21 bp):
ATCATGATGGATACATCTAAC
Found at i:4919199 original size:40 final size:40
Alignment explanation
Indices: 4919155--4919234 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
4919145 AAAATGGAGC
*
4919155 GAGATAGAAGAGAATCATGATGGATACATCTAACATCAAT
1 GAGATAGAACAGAATCATGATGGATACATCTAACATCAAT
4919195 GAGATAGAACAGAATCATGATGGATACATCTAACATCAAT
1 GAGATAGAACAGAATCATGATGGATACATCTAACATCAAT
4919235 AAAGGTGATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.45, C:0.14, G:0.19, T:0.23
Consensus pattern (40 bp):
GAGATAGAACAGAATCATGATGGATACATCTAACATCAAT
Found at i:4920003 original size:13 final size:12
Alignment explanation
Indices: 4919985--4920027 Score: 52
Period size: 13 Copynumber: 3.6 Consensus size: 12
4919975 AAATTTTAAT
4919985 TTTTTTATATATA
1 TTTTTTATAT-TA
4919998 TTTTTTATATT-
1 TTTTTTATATTA
* *
4920009 TTTTTAAAATTA
1 TTTTTTATATTA
4920021 TTTTTTA
1 TTTTTTA
4920028 AAAATATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 9 0.35
12 7 0.27
13 10 0.38
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTTTATATTA
Found at i:4920009 original size:23 final size:22
Alignment explanation
Indices: 4919978--4920028 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
4919968 AAAATTAAAA
*
4919978 TTTTAATTTTTTT-ATATATATT
1 TTTTAATTTTTTTAAAAT-TATT
4920000 TTTTATATTTTTTTAAAATTATT
1 TTTTA-ATTTTTTTAAAATTATT
4920023 TTTTAA
1 TTTTAA
4920029 AAATATAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 6 0.23
23 17 0.65
24 3 0.12
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTAATTTTTTTAAAATTATT
Found at i:4924963 original size:15 final size:15
Alignment explanation
Indices: 4924934--4924962 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4924924 TCGCCCCCCC
4924934 CCCCACACCCCAAAA
1 CCCCACACCCCAAAA
4924949 CCCCAC-CCCCAAAA
1 CCCCACACCCCAAAA
4924963 ATAAAAAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.62, G:0.00, T:0.00
Consensus pattern (15 bp):
CCCCACACCCCAAAA
Found at i:4930486 original size:12 final size:12
Alignment explanation
Indices: 4930471--4930500 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
4930461 ATTGCTAGAA
4930471 AAAAAAAAAAAC
1 AAAAAAAAAAAC
*
4930483 AAAAACAAAAAC
1 AAAAAAAAAAAC
4930495 AAAAAA
1 AAAAAA
4930501 CATTTCGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:4932701 original size:19 final size:19
Alignment explanation
Indices: 4932677--4932715 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
4932667 ACTAAACAAT
4932677 TCATGATTCCATGCTTCAA
1 TCATGATTCCATGCTTCAA
*
4932696 TCATGATTCTATGCTTCAA
1 TCATGATTCCATGCTTCAA
4932715 T
1 T
4932716 TCACCATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (19 bp):
TCATGATTCCATGCTTCAA
Found at i:4937575 original size:22 final size:23
Alignment explanation
Indices: 4937550--4937595 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
4937540 CAACCAAATC
4937550 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
4937572 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
4937595 A
1 A
4937596 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:4937601 original size:23 final size:23
Alignment explanation
Indices: 4937557--4937601 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
4937547 ATCAATTCAA
*
4937557 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
4937580 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
4937602 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:4944211 original size:19 final size:19
Alignment explanation
Indices: 4944187--4944240 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 19
4944177 ACACACACAA
*
4944187 AGTAAGCTTTCAAAAGCTT
1 AGTAAGCATTCAAAAGCTT
4944206 AGTAAGCCATTCAAAAGCTT
1 AGTAAG-CATTCAAAAGCTT
4944226 AGTAAGCCATTCAAA
1 AGTAAG-CATTCAAA
4944241 GTAAATAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 6 0.18
20 27 0.82
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (19 bp):
AGTAAGCATTCAAAAGCTT
Found at i:4944220 original size:20 final size:20
Alignment explanation
Indices: 4944195--4944240 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
4944185 AAAGTAAGCT
4944195 TTCAAAAGCTTAGTAAGCCA
1 TTCAAAAGCTTAGTAAGCCA
4944215 TTCAAAAGCTTAGTAAGCCA
1 TTCAAAAGCTTAGTAAGCCA
4944235 TTCAAA
1 TTCAAA
4944241 GTAAATAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (20 bp):
TTCAAAAGCTTAGTAAGCCA
Found at i:4944501 original size:43 final size:43
Alignment explanation
Indices: 4944453--4944609 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
4944443 AGCTCGTACA
* *
4944453 ATGCCAACGTCCCATACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
* * * *
4944496 ATGCC-ACTGTCCCAAACAG-GGCCTTACCCGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAATATCG
* * *
4944538 ATGCCAACGTCCTAGACGTGGTCTCACACGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCG
*
4944582 ATGTCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
4944610 TGAAAAAACA
Statistics
Matches: 92, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 24 0.26
43 37 0.40
44 30 0.33
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:4948240 original size:92 final size:92
Alignment explanation
Indices: 4948079--4948252 Score: 267
Period size: 92 Copynumber: 1.9 Consensus size: 92
4948069 AATATTAACT
* *
4948079 AAAGATGACATTTTGTACATTGAAATAGCTACAAAGTAATCATTAACCATACCATGATTAACCCA
1 AAAGATGACATTTTGTACATTAAAATAGCTACAAAGTAATCATTAACCATACCATAATTAACCCA
* *
4948144 AACAATAAAGATTTCACCTTTGCATAA
66 AACAACAAAGACTTCACCTTTGCATAA
* * * * *
4948171 AAAGATGTCATTTTGTACATTAAAATAGCTATAAAGTAATCATTAGCCATACTATAATTAACCCT
1 AAAGATGACATTTTGTACATTAAAATAGCTACAAAGTAATCATTAACCATACCATAATTAACCCA
4948236 AACAACAAAGACTTCAC
66 AACAACAAAGACTTCAC
4948253 ATTCACCTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (92 bp):
AAAGATGACATTTTGTACATTAAAATAGCTACAAAGTAATCATTAACCATACCATAATTAACCCA
AACAACAAAGACTTCACCTTTGCATAA
Found at i:4952873 original size:21 final size:21
Alignment explanation
Indices: 4952841--4952881 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
4952831 AGGCTCGAGG
4952841 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
4952862 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
4952882 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:4972230 original size:17 final size:17
Alignment explanation
Indices: 4972208--4972256 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
4972198 GACTAATCCC
*
4972208 TATACATCACTTAGGTA
1 TATACATTACTTAGGTA
*
4972225 TATACATTACCTAGGTA
1 TATACATTACTTAGGTA
*
4972242 TGTACATTACTTAGG
1 TATACATTACTTAGG
4972257 CACATGCCAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (17 bp):
TATACATTACTTAGGTA
Found at i:4973043 original size:41 final size:41
Alignment explanation
Indices: 4972936--4973046 Score: 106
Period size: 37 Copynumber: 2.8 Consensus size: 41
4972926 TCGGATAGTT
* *
4972936 CGAAGCAATAGT-TGACACCCAGTGTCTCATCG-GCCAAGC
1 CGAAGTAATAGTATGACACCCAGTGTCTCATCGAACCAAGC
** ** * * *
4972975 CGAAGT-A-AG-ATGGTACCCAGTACCTCATCGAATCTATC
1 CGAAGTAATAGTATGACACCCAGTGTCTCATCGAACCAAGC
4973013 CGAAGTAATAGTATGACACCCAGTGTCTCATCGA
1 CGAAGTAATAGTATGACACCCAGTGTCTCATCGA
4973047 CTCAAGGTCG
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
37 18 0.33
38 10 0.19
39 6 0.11
40 2 0.04
41 18 0.33
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.22
Consensus pattern (41 bp):
CGAAGTAATAGTATGACACCCAGTGTCTCATCGAACCAAGC
Found at i:4975785 original size:24 final size:24
Alignment explanation
Indices: 4975767--4975856 Score: 162
Period size: 24 Copynumber: 3.8 Consensus size: 24
4975757 TGAATTTTCG
4975767 AGAGAAAATCCAAAAGAATATCCC
1 AGAGAAAATCCAAAAGAATATCCC
4975791 AGAGAAAATCCAAAAGAATATCCC
1 AGAGAAAATCCAAAAGAATATCCC
*
4975815 AGAGAAAGTCCAAAAGAATATCCC
1 AGAGAAAATCCAAAAGAATATCCC
*
4975839 AGAGAAAATCCACAAGAA
1 AGAGAAAATCCAAAAGAA
4975857 GAATATCACT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.54, C:0.20, G:0.14, T:0.11
Consensus pattern (24 bp):
AGAGAAAATCCAAAAGAATATCCC
Found at i:4975789 original size:12 final size:12
Alignment explanation
Indices: 4975769--4975856 Score: 77
Period size: 12 Copynumber: 7.3 Consensus size: 12
4975759 AATTTTCGAG
4975769 AGAAAATCCAAA
1 AGAAAATCCAAA
* * *
4975781 AGAATATCCCAG
1 AGAAAATCCAAA
4975793 AGAAAATCCAAA
1 AGAAAATCCAAA
* * *
4975805 AGAATATCCCAG
1 AGAAAATCCAAA
*
4975817 AGAAAGTCCAAA
1 AGAAAATCCAAA
* * *
4975829 AGAATATCCCAG
1 AGAAAATCCAAA
*
4975841 AGAAAATCCACA
1 AGAAAATCCAAA
4975853 AGAA
1 AGAA
4975857 GAATATCACT
Statistics
Matches: 55, Mismatches: 21, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
12 55 1.00
ACGTcount: A:0.55, C:0.20, G:0.14, T:0.11
Consensus pattern (12 bp):
AGAAAATCCAAA
Found at i:4976169 original size:13 final size:13
Alignment explanation
Indices: 4976151--4976178 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
4976141 GATAAAAGAG
4976151 CATATAGAATACC
1 CATATAGAATACC
4976164 CATATAGAATACC
1 CATATAGAATACC
4976177 CA
1 CA
4976179 GAAGAGATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.25, G:0.07, T:0.21
Consensus pattern (13 bp):
CATATAGAATACC
Found at i:4977158 original size:22 final size:22
Alignment explanation
Indices: 4977113--4977158 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
4977103 TATGCACTAT
*
4977113 TAAACAGAGAGCACAAATGCGC
1 TAAACAGAGAGCACAAACGCGC
* * *
4977135 TAAACGGAGAGCACTAACGTGC
1 TAAACAGAGAGCACAAACGCGC
4977157 TA
1 TA
4977159 GTGATCAGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.22, G:0.24, T:0.13
Consensus pattern (22 bp):
TAAACAGAGAGCACAAACGCGC
Found at i:4977199 original size:25 final size:25
Alignment explanation
Indices: 4977171--4977267 Score: 133
Period size: 25 Copynumber: 3.9 Consensus size: 25
4977161 GATCAGAGAG
* *
4977171 CGTGCTAATATTCAGAGAGCACTGA
1 CGTGCTAATAATCAGAGAGCACCGA
4977196 CGTGCTAA-ATATCAGAGAGCACCGA
1 CGTGCTAATA-ATCAGAGAGCACCGA
* *
4977221 TGTGCTAATAATCAGAGAGCACCAA
1 CGTGCTAATAATCAGAGAGCACCGA
*
4977246 TGTGCTAATAATCAGAGAGCAC
1 CGTGCTAATAATCAGAGAGCAC
4977268 GCTAAACTCC
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
24 1 0.02
25 64 0.97
26 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (25 bp):
CGTGCTAATAATCAGAGAGCACCGA
Found at i:4978507 original size:17 final size:17
Alignment explanation
Indices: 4978485--4978535 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
4978475 GACTAATCCC
*
4978485 TATACATCACTTAGGTA
1 TATACATTACTTAGGTA
*
4978502 TATACATTACCTAGGTA
1 TATACATTACTTAGGTA
*
4978519 TGTACATTACTTAGGTA
1 TATACATTACTTAGGTA
4978536 CATGCCACAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (17 bp):
TATACATTACTTAGGTA
Found at i:4979320 original size:41 final size:41
Alignment explanation
Indices: 4979213--4979323 Score: 106
Period size: 37 Copynumber: 2.8 Consensus size: 41
4979203 TCGGATAGTT
* *
4979213 CGAAGCAATAGT-TGACACCCAGTGTCTCATCG-GCCAAGC
1 CGAAGTAATAGTATGACACCCAGTGTCTCATCGAACCAAGC
** ** * * *
4979252 CGAAGT-A-AG-ATGGTACCCAGTACCTCATCGAATCTATC
1 CGAAGTAATAGTATGACACCCAGTGTCTCATCGAACCAAGC
4979290 CGAAGTAATAGTATGACACCCAGTGTCTCATCGA
1 CGAAGTAATAGTATGACACCCAGTGTCTCATCGA
4979324 CTCAAGGTCG
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
37 18 0.33
38 10 0.19
39 6 0.11
40 2 0.04
41 18 0.33
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.22
Consensus pattern (41 bp):
CGAAGTAATAGTATGACACCCAGTGTCTCATCGAACCAAGC
Found at i:4980943 original size:21 final size:21
Alignment explanation
Indices: 4980918--4980961 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
4980908 ATTGGGCTGT
* *
4980918 TACACTCCACCTGTTTTGGAG
1 TACACTCCACCTGCTGTGGAG
4980939 TACACTCCACCTGCTGTGGAG
1 TACACTCCACCTGCTGTGGAG
4980960 TA
1 TA
4980962 TTGCTCATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (21 bp):
TACACTCCACCTGCTGTGGAG
Found at i:4989051 original size:6 final size:6
Alignment explanation
Indices: 4989029--4989062 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
4989019 GATTAATACT
* *
4989029 AAATCA AATTTA AAATCA AAATCA AAATCA AAAT
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAAT
4989063 TGATTTTACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.24
Consensus pattern (6 bp):
AAATCA
Found at i:4991432 original size:103 final size:103
Alignment explanation
Indices: 4991253--4991462 Score: 393
Period size: 103 Copynumber: 2.0 Consensus size: 103
4991243 GAGGCATATC
*
4991253 TTTGACATAGCTATGTATTTTTCTAAGTTAACCTAGTATACGTAACCTGCCTCTGTGTTTGATTG
1 TTTGAAATAGCTATGTATTTTTCTAAGTTAACCTAGTATACGTAACCTGCCTCTGTGTTTGATTG
4991318 TCTCTGACTCCAATATGTTGCGTATAAACCCGTTTGAG
66 TCTCTGACTCCAATATGTTGCGTATAAACCCGTTTGAG
*
4991356 TTTGAAATAGCTATGTATTTTTCTAATTTAACCTAGTATACGTAACCTGCCTCTGTGTTTGATTG
1 TTTGAAATAGCTATGTATTTTTCTAAGTTAACCTAGTATACGTAACCTGCCTCTGTGTTTGATTG
*
4991421 TCTCTGACTCCAATATGTTGCGTATAAACTCGTTTGAG
66 TCTCTGACTCCAATATGTTGCGTATAAACCCGTTTGAG
4991459 TTTG
1 TTTG
4991463 TTTATCACTT
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 104 1.00
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.41
Consensus pattern (103 bp):
TTTGAAATAGCTATGTATTTTTCTAAGTTAACCTAGTATACGTAACCTGCCTCTGTGTTTGATTG
TCTCTGACTCCAATATGTTGCGTATAAACCCGTTTGAG
Found at i:4992638 original size:22 final size:22
Alignment explanation
Indices: 4992613--4992656 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
4992603 ATTTTTTAAA
*
4992613 ATTTTTTAGAATAATAAATTAT
1 ATTTATTAGAATAATAAATTAT
* * *
4992635 ATTTATTATATTAATAATTTAT
1 ATTTATTAGAATAATAAATTAT
4992657 TATATGACTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
ATTTATTAGAATAATAAATTAT
Found at i:4997590 original size:22 final size:22
Alignment explanation
Indices: 4997535--4997600 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
4997525 TTGATCAAGG
* *
4997535 AAGTCTTGAGACAATCTAACTT
1 AAGTCTCGAGACAATGTAACTT
*
4997557 AAGTCTCAAGACAATGTAACTT
1 AAGTCTCGAGACAATGTAACTT
** * *
4997579 TTGTTTCGAGACAATGTCACTT
1 AAGTCTCGAGACAATGTAACTT
4997601 CGAAGCTAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (22 bp):
AAGTCTCGAGACAATGTAACTT
Found at i:4998409 original size:11 final size:11
Alignment explanation
Indices: 4998362--4998409 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
4998352 GTTTTTTCAC
4998362 TATTTTGCTAT
1 TATTTTGCTAT
* *
4998373 CATTTTACTAT
1 TATTTTGCTAT
* *
4998384 TATGTTGCTAC
1 TATTTTGCTAT
*
4998395 TATTTTGCTGT
1 TATTTTGCTAT
4998406 TATT
1 TATT
4998410 ATTTGGATAT
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.19, C:0.12, G:0.10, T:0.58
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:4999385 original size:28 final size:28
Alignment explanation
Indices: 4999345--4999400 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
4999335 GAAAATGAAA
4999345 TGAAAAATGTGGCTATAAGGTGCATAAT
1 TGAAAAATGTGGCTATAAGGTGCATAAT
4999373 TGAAAAATGTGGCTATAAGGTGCATAAT
1 TGAAAAATGTGGCTATAAGGTGCATAAT
4999401 CTAAATAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (28 bp):
TGAAAAATGTGGCTATAAGGTGCATAAT
Found at i:4999574 original size:22 final size:21
Alignment explanation
Indices: 4999521--4999576 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
4999511 TGAAGTTACG
* *
4999521 AAAATAAAATGTATGATACAT
1 AAAAGAAAATGTTTGATACAT
*
4999542 AAAAGAGAATGTTTGTATACAT
1 AAAAGAAAATGTTTG-ATACAT
* *
4999564 ATATGAAAATGTT
1 AAAAGAAAATGTT
4999577 AAGAAACTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 12 0.43
22 16 0.57
ACGTcount: A:0.50, C:0.04, G:0.14, T:0.32
Consensus pattern (21 bp):
AAAAGAAAATGTTTGATACAT
Found at i:5001568 original size:26 final size:24
Alignment explanation
Indices: 5001534--5001582 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
5001524 TAAATAAAAA
* *
5001534 ATTTTAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAA-CAAATAC
5001560 ATTTAAAAACATAAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
5001583 TTAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAC
Found at i:5001701 original size:23 final size:23
Alignment explanation
Indices: 5001675--5001721 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
5001665 ATTAAAATTG
*
5001675 AAAAT-AAAATATAAATATGATTT
1 AAAATAAAAATAAAAATAT-ATTT
5001698 AAAATAAAAATAAAAATATATTT
1 AAAATAAAAATAAAAATATATTT
5001721 A
1 A
5001722 GTATATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
AAAATAAAAATAAAAATATATTT
Found at i:5014956 original size:20 final size:19
Alignment explanation
Indices: 5014941--5015000 Score: 77
Period size: 19 Copynumber: 3.1 Consensus size: 19
5014931 AGAAAAAAAC
5014941 TATAAAAATCATAAAAATA
1 TATAAAAATCATAAAAATA
* *
5014960 TATTAAAAAAT-ATAAAATTT
1 TA-T-AAAAATCATAAAAATA
5014980 TATAAAAATCATAAAAATA
1 TATAAAAATCATAAAAATA
5014999 TA
1 TA
5015001 AAATGCATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 6 0.18
19 12 0.35
20 10 0.29
21 6 0.18
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
TATAAAAATCATAAAAATA
Done.