Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 157 of 295
Found at i:49420575 original size:55 final size:55
Alignment explanation
Indices: 49420476--49420586 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 55
49420466 CAAGCCTGCC
* * *
49420476 AAAACAACACGGGCGTGCAACACGCCCGTGTGGAAGACCCGTGGTTGAACTTATT
1 AAAACAACACGGGCGTGCAACACGCCCGTGTCGAACACCCGTGGTTGAACCTATT
* ** * * *
49420531 AAAACAGCACGGGCGTGTGACACGCCCGTGTCTAACACCTGTGGTTTAACCTATT
1 AAAACAACACGGGCGTGCAACACGCCCGTGTCGAACACCCGTGGTTGAACCTATT
49420586 A
1 A
49420587 GATTGACACG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (55 bp):
AAAACAACACGGGCGTGCAACACGCCCGTGTCGAACACCCGTGGTTGAACCTATT
Found at i:49425733 original size:52 final size:51
Alignment explanation
Indices: 49425624--49425797 Score: 192
Period size: 52 Copynumber: 3.4 Consensus size: 51
49425614 TGGATACTCG
* ** * * *
49425624 GTGGCCTACACATAGTACCACCCTTGT-AGTCAAAGCTACCTTATTCACAAA
1 GTGGCCTTCACATAGTACCACAATTGTGA-CCAAAGCTACTTTCTTCACAAA
* * *
49425675 GCGGCCTTCATATAGAACCACAATTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACAATTGTGACCAAAGCTA-CTTTCTTCACAAA
* * * *
49425727 GTGGCCTACACATAGTACCACACTTGTGACC-AAGCTA-TATCTTCTCAAA
1 GTGGCCTTCACATAGTACCACAATTGTGACCAAAGCTACTTTCTTCACAAA
49425776 GTGGCCTTCACATAGTACCACA
1 GTGGCCTTCACATAGTACCACA
49425798 CCTGAGTCAC
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
49 31 0.30
51 35 0.34
52 38 0.37
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACAATTGTGACCAAAGCTACTTTCTTCACAAA
Found at i:49431921 original size:42 final size:42
Alignment explanation
Indices: 49431824--49431929 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 42
49431814 TTAGGGTTAC
* * *
49431824 CGAGGCTATGTGTAAGACCATATCTGGGATATGGCATCATTA
1 CGAGACTATGTGTAAGACCATATCTAGGATATGGCATCAATA
** * *
49431866 TTAGACTACGTGTAAAACCATATCTAGGATATGGCATCAATA
1 CGAGACTATGTGTAAGACCATATCTAGGATATGGCATCAATA
* *
49431908 CGAGATTTTGTGTAAGACCATA
1 CGAGACTATGTGTAAGACCATA
49431930 GCTGGGTTAT
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (42 bp):
CGAGACTATGTGTAAGACCATATCTAGGATATGGCATCAATA
Found at i:49436121 original size:45 final size:45
Alignment explanation
Indices: 49436062--49436152 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
49436052 CCAAAACATG
*
49436062 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTTAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
* * *
49436107 TGTCATATATATCATGAACTCAGACCACAACTCGATGAGTTCAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
49436152 T
1 T
49436153 CCCATAGTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.26
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:49438597 original size:44 final size:44
Alignment explanation
Indices: 49438547--49438647 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 44
49438537 AAGAACTCGT
* * * *
49438547 ACACTTAGTGCCAAAATGATT-AGCCTAAGTTATAACGATATCGC
1 ACACTTAGTGCCAAAA-CATTAAACCGAAGTTATAACAATATCGC
** **
49438591 ACACTTAGTGCCATCACATTAAACCGAAGTTATCTCAATATCGC
1 ACACTTAGTGCCAAAACATTAAACCGAAGTTATAACAATATCGC
49438635 ACACTTAGTGCCA
1 ACACTTAGTGCCA
49438648 GATATAGCCG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 3 0.06
44 45 0.94
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.27
Consensus pattern (44 bp):
ACACTTAGTGCCAAAACATTAAACCGAAGTTATAACAATATCGC
Found at i:49448761 original size:18 final size:19
Alignment explanation
Indices: 49448728--49448763 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
49448718 TATTATAATC
49448728 TATATGATAATAATATTTA
1 TATATGATAATAATATTTA
*
49448747 TATATG-TATTAATATTT
1 TATATGATAATAATATTT
49448764 TTAGTAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (19 bp):
TATATGATAATAATATTTA
Found at i:49468353 original size:16 final size:16
Alignment explanation
Indices: 49468334--49468370 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
49468324 GTTGAAATAC
49468334 CGAAAAGTCAAAAAGT
1 CGAAAAGTCAAAAAGT
*
49468350 CGAAAAGTCAAAAATT
1 CGAAAAGTCAAAAAGT
49468366 CGAAA
1 CGAAA
49468371 TGCTGAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.57, C:0.14, G:0.16, T:0.14
Consensus pattern (16 bp):
CGAAAAGTCAAAAAGT
Found at i:49468652 original size:29 final size:29
Alignment explanation
Indices: 49468602--49468716 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
49468592 GCATGAAAAT
* * *
49468602 AATATGATTTGGGCATAATGGGCCATATG
1 AATATGAATTGGGCCTAGTGGGCCATATG
* *
49468631 AATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAGTGGGCCATATG
* *
49468660 AATATGAATTGGGTC-AGATGGGCCATTTG
1 AATATGAATTGGGCCTAG-TGGGCCATATG
*
49468689 AATAAG-ATTGGGCCTAGTGGGCCATATG
1 AATATGAATTGGGCCTAGTGGGCCATATG
49468717 CATGTATGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
28 19 0.26
29 53 0.74
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (29 bp):
AATATGAATTGGGCCTAGTGGGCCATATG
Found at i:49473138 original size:29 final size:28
Alignment explanation
Indices: 49473106--49473190 Score: 82
Period size: 29 Copynumber: 3.0 Consensus size: 28
49473096 TGGGATATAT
49473106 GAATGTGAATTGGGCCTAGTGGGCCATAA
1 GAAT-TGAATTGGGCCTAGTGGGCCATAA
* **
49473135 GAATATGAACTGGGCC-AGATGGGCCATTT
1 GAAT-TGAATTGGGCCTAG-TGGGCCATAA
** *
49473164 GAATAAAATTAGGCCTAGTGGGCCATA
1 GAATTGAATTGGGCCTAGTGGGCCATA
49473191 TGCATGTATG
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
28 17 0.38
29 28 0.62
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.24
Consensus pattern (28 bp):
GAATTGAATTGGGCCTAGTGGGCCATAA
Found at i:49477595 original size:37 final size:37
Alignment explanation
Indices: 49477554--49477628 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
49477544 GCACACTCAA
*
49477554 AGGTTTGAACACGTGACCTAAAGATACACTAATACAC
1 AGGTTCGAACACGTGACCTAAAGATACACTAATACAC
49477591 AGGTTCGAACACGTGACCTAAAGATACACTAATACAC
1 AGGTTCGAACACGTGACCTAAAGATACACTAATACAC
49477628 A
1 A
49477629 ACTAACCACC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.23, G:0.16, T:0.20
Consensus pattern (37 bp):
AGGTTCGAACACGTGACCTAAAGATACACTAATACAC
Found at i:49479340 original size:27 final size:26
Alignment explanation
Indices: 49479285--49479347 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
49479275 TAAGTAATTA
*
49479285 ATATAAAATATTTGTAAAATTGGTGAT
1 ATATAAAATATTTGTAAAATT-GTAAT
*
49479312 ATATAAAATATTTTTAAAAATT-TAA-
1 ATATAAAATATTTGT-AAAATTGTAAT
49479337 ATATAATAATA
1 ATATAA-AATA
49479348 AATAAGATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 6 0.19
26 6 0.19
27 14 0.44
28 6 0.19
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.41
Consensus pattern (26 bp):
ATATAAAATATTTGTAAAATTGTAAT
Found at i:49479381 original size:31 final size:31
Alignment explanation
Indices: 49479324--49479465 Score: 108
Period size: 31 Copynumber: 4.5 Consensus size: 31
49479314 ATAAAATATT
* *
49479324 TTTAAA-AATTTAAATATAATAATAAATAAGA
1 TTTAAATAATTT-AATATAATGATAAATAATA
* *
49479355 TTTAAATAATTTAATATAATGGTAAATGATA
1 TTTAAATAATTTAATATAATGATAAATAATA
* * * *
49479386 TTTAAGTCATTTAACATAACGATATGTAA-AATA
1 TTTAAATAATTTAATATAATGATA---AATAATA
* * *
49479419 TTTAAATAATTTAATATAATAATATATAAAA
1 TTTAAATAATTTAATATAATGATAAATAATA
* *
49479450 TATAATTTAATTTAAT
1 TTTAA-ATAATTTAAT
49479466 TTTTTATACA
Statistics
Matches: 86, Mismatches: 19, Indels: 11
0.74 0.16 0.09
Matches are distributed among these distances:
30 1 0.01
31 47 0.55
32 14 0.16
33 22 0.26
34 2 0.02
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (31 bp):
TTTAAATAATTTAATATAATGATAAATAATA
Found at i:49479421 original size:33 final size:33
Alignment explanation
Indices: 49479383--49479452 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
49479373 ATGGTAAATG
* * * *
49479383 ATATTTAAGTCATTTAACATAACGATATGTAAA
1 ATATTTAAATAATTTAACATAACAATATATAAA
* *
49479416 ATATTTAAATAATTTAATATAATAATATATAAA
1 ATATTTAAATAATTTAACATAACAATATATAAA
49479449 ATAT
1 ATAT
49479453 AATTTAATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.40
Consensus pattern (33 bp):
ATATTTAAATAATTTAACATAACAATATATAAA
Found at i:49479925 original size:19 final size:21
Alignment explanation
Indices: 49479903--49479953 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
49479893 AGAATTTTAC
49479903 TTATTTTTA-ATTAA-ATATT
1 TTATTTTTATATTAATATATT
49479922 TTA-TTTTATATTAATTATATT
1 TTATTTTTATATTAA-TATATT
49479943 TTA-TTTTATAT
1 TTATTTTTATAT
49479954 CTAAGTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.17
19 8 0.28
21 16 0.55
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TTATTTTTATATTAATATATT
Found at i:49480994 original size:3 final size:3
Alignment explanation
Indices: 49480986--49481019 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
49480976 TTAACTTCAA
* *
49480986 AAT AAT AAT AAT AAT AAC AAA AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
49481020 TAAAAACCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:49481025 original size:18 final size:17
Alignment explanation
Indices: 49480984--49481025 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
49480974 TTTTAACTTC
*
49480984 AAAATAATAATAATAAT
1 AAAAAAATAATAATAAT
49481001 AACAAAAATAATAATAAT
1 AA-AAAAATAATAATAAT
*
49481019 ATAAAAA
1 AAAAAAA
49481026 CCCAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAAAATAATAATAAT
Found at i:49481144 original size:19 final size:19
Alignment explanation
Indices: 49481097--49481144 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
49481087 TGAAAGAATT
49481097 TATATTTTTTAAAATTTTCA
1 TATA-TTTTTAAAATTTTCA
* *
49481117 TATAATTTTAAATATTTTTA
1 TATATTTTTAAA-ATTTTCA
49481137 -ATATTTTT
1 TATATTTTT
49481145 GCCCGTGTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
TATATTTTTAAAATTTTCA
Found at i:49481576 original size:14 final size:14
Alignment explanation
Indices: 49481534--49481576 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 14
49481524 CACTTTCTTG
*
49481534 AAAA-TATTTCAAA
1 AAAACTATTTAAAA
49481547 AAAACTATTTTAAAAA
1 AAAACTA-TTT-AAAA
49481563 AAAACTATTTAAAA
1 AAAACTATTTAAAA
49481577 TGAAACAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 4 0.15
14 6 0.23
15 6 0.23
16 10 0.38
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (14 bp):
AAAACTATTTAAAA
Found at i:49481582 original size:15 final size:16
Alignment explanation
Indices: 49481544--49481576 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
49481534 AAAATATTTC
49481544 AAAAAAACTATTTTAA
1 AAAAAAACTATTTTAA
49481560 AAAAAAACTA-TTTAA
1 AAAAAAACTATTTTAA
49481575 AA
1 AA
49481577 TGAAACAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAAAACTATTTTAA
Found at i:49483027 original size:12 final size:12
Alignment explanation
Indices: 49483010--49483045 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
49483000 CAACCCAAGG
49483010 GGAAGGGGAAGA
1 GGAAGGGGAAGA
49483022 GGAAGGGGAAGA
1 GGAAGGGGAAGA
* *
49483034 GAAAAGGGAAGA
1 GGAAGGGGAAGA
49483046 AAATTTAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GGAAGGGGAAGA
Found at i:49484929 original size:19 final size:19
Alignment explanation
Indices: 49484905--49484944 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
49484895 TGTGTCATCA
*
49484905 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
49484924 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
49484943 TA
1 TA
49484945 CACATTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:49486641 original size:35 final size:34
Alignment explanation
Indices: 49486582--49486664 Score: 105
Period size: 35 Copynumber: 2.4 Consensus size: 34
49486572 TATTTGTTTT
* *
49486582 TATTATATAATTAATGATATTTAAA-TATAATTTA
1 TATTATATAATTAATGATAATTAAATTATAA-TGA
*
49486616 TATTATATGAATTTATGATAATTAAATTATAATGA
1 TATTATAT-AATTAATGATAATTAAATTATAATGA
*
49486651 TATTATATTATTAA
1 TATTATATAATTAA
49486665 ATAAATCAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
34 12 0.29
35 25 0.60
36 5 0.12
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (34 bp):
TATTATATAATTAATGATAATTAAATTATAATGA
Found at i:49486650 original size:25 final size:23
Alignment explanation
Indices: 49486582--49486666 Score: 61
Period size: 24 Copynumber: 3.7 Consensus size: 23
49486572 TATTTGTTTT
* *
49486582 TATTATATAATT-AATGATAT-T
1 TATTATATAATTAAATTATATGA
* *
49486603 TA-AATATAATTTATATTATATGA
1 TATTATATAA-TTAAATTATATGA
49486626 -ATTTATGATAATTAAATTATAATGA
1 TA-TTAT-ATAATTAAATTAT-ATGA
*
49486651 TATTATATTATTAAAT
1 TATTATATAATTAAAT
49486667 AAATCAAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
20 6 0.12
21 4 0.08
22 7 0.14
24 19 0.39
25 12 0.24
26 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (23 bp):
TATTATATAATTAAATTATATGA
Found at i:49488115 original size:45 final size:45
Alignment explanation
Indices: 49488049--49488147 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 45
49488039 CTTTTACCAT
* *
49488049 TACTGTTACCGATTAGACACTTTGTGTGTTGAATACTGTTACCGC
1 TACTGTTACAGATCAGACACTTTGTGTGTTGAATACTGTTACCGC
* * *
49488094 TACTGTTACAGATCCAG-CACTTTGTGTGTTGAATATTGTTACTGT
1 TACTGTTACAGAT-CAGACACTTTGTGTGTTGAATACTGTTACCGC
49488139 TACTGTTAC
1 TACTGTTAC
49488148 TGCTACTGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 46 0.96
46 2 0.04
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40
Consensus pattern (45 bp):
TACTGTTACAGATCAGACACTTTGTGTGTTGAATACTGTTACCGC
Found at i:49488141 original size:6 final size:6
Alignment explanation
Indices: 49488130--49488170 Score: 64
Period size: 6 Copynumber: 6.7 Consensus size: 6
49488120 TGTTGAATAT
*
49488130 TGTTAC TGTTAC TGTTAC TGCTAC TGTTAC TGATTAC TGTT
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TG-TTAC TGTT
49488171 TAGGTACTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (6 bp):
TGTTAC
Found at i:49489604 original size:28 final size:29
Alignment explanation
Indices: 49489573--49489687 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 29
49489563 TACATACATG
* *
49489573 CATATGGCCCACTGGGCCCA-ATCTTATT
1 CATATGGCCCACTAGGCCCAGATCATATT
* * *
49489601 CATATGGCCCATTTGGCCCAGTTCATATT
1 CATATGGCCCACTAGGCCCAGATCATATT
* * * *
49489630 CTTATGGCCCACTAGGCCTA-ATTCACATA
1 CATATGGCCCACTAGGCCCAGA-TCATATT
* * *
49489659 CATATGGCCTATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAGATCATATT
49489688 ATACTCATGC
Statistics
Matches: 67, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
28 18 0.27
29 48 0.72
30 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAGATCATATT
Found at i:49489677 original size:58 final size:57
Alignment explanation
Indices: 49489575--49489687 Score: 136
Period size: 58 Copynumber: 2.0 Consensus size: 57
49489565 CATACATGCA
* ** * * **
49489575 TATGGCCCACTGGGCCCAATCTTATTCATATGGCCCATTTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATACATATGGCCCATTAGGCCCAAATCATATTCT
* *
49489632 TATGGCCCACTAGGCCTAATTCACATACATATGGCCTATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCACATACATATGGCCCATTAGGCCCAAATCATATT
49489688 ATACTCATGC
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
57 17 0.37
58 29 0.63
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATACATATGGCCCATTAGGCCCAAATCATATTCT
Found at i:49489793 original size:19 final size:18
Alignment explanation
Indices: 49489760--49489796 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
49489750 TGGGCCCAAC
49489760 AGCCCATCAGGCCCATTT
1 AGCCCATCAGGCCCATTT
*
49489778 AGCCCATTCCGGCCCATTT
1 AGCCCA-TCAGGCCCATTT
49489797 GGCCAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (18 bp):
AGCCCATCAGGCCCATTT
Found at i:49489805 original size:19 final size:19
Alignment explanation
Indices: 49489769--49489805 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
49489759 CAGCCCATCA
*
49489769 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
49489788 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
49489806 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:49489943 original size:16 final size:16
Alignment explanation
Indices: 49489907--49489960 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
49489897 CCAACTTTTA
* *
49489907 GCTTTTTGACAATTCG
1 GCTTTTCGACATTTCG
* * * *
49489923 ACTTTTCGGCTTTTTG
1 GCTTTTCGACATTTCG
49489939 GCTTTTCGACATTTCG
1 GCTTTTCGACATTTCG
49489955 GCTTTT
1 GCTTTT
49489961 GCTGATTCAT
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.11, C:0.20, G:0.19, T:0.50
Consensus pattern (16 bp):
GCTTTTCGACATTTCG
Found at i:49493225 original size:118 final size:117
Alignment explanation
Indices: 49493005--49493219 Score: 263
Period size: 119 Copynumber: 1.8 Consensus size: 117
49492995 AATTTCTTAT
* * * * *
49493005 AAAAACCCGAATAATTTTCTATAAAATCCCAAGTTTTTCTCTTTTACTGGGGAAAAATAAAATTA
1 AAAAACCCAAATAATTCTCTATAAAATCCCAAGTTTTTCTCTTTTACTGAGAAAAAATAAAACTA
*
49493070 ATTCTAAAAAGGGAAAAAATAAAGAAAATAAAGAAAAATAGTTTTTCCTATAAA
66 ATTCTAAAAAGGAAAAAAATAAAGAAAAT--AGAAAAATAGTTTTTCCTATAAA
* * *
49493124 AAAAACCCAAATAGTTCTCTATAAAATCCGATGTTTTT-TCCTTTTACT-AGAAAAAATAAAACT
1 AAAAACCCAAATAATTCTCTATAAAATCCCAAGTTTTTCT-CTTTTACTGAGAAAAAATAAAACT
* *
49493187 AATTTTAAAAGAGGAAATAATAATAAAGGAAAT
65 AATTCTAAAA-AGGAAA-AA-AATAAAGAAAAT
49493220 TAAAAAGATA
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
118 22 0.27
119 46 0.57
120 2 0.02
121 11 0.14
ACGTcount: A:0.49, C:0.11, G:0.10, T:0.30
Consensus pattern (117 bp):
AAAAACCCAAATAATTCTCTATAAAATCCCAAGTTTTTCTCTTTTACTGAGAAAAAATAAAACTA
ATTCTAAAAAGGAAAAAAATAAAGAAAATAGAAAAATAGTTTTTCCTATAAA
Found at i:49497732 original size:31 final size:28
Alignment explanation
Indices: 49497697--49497765 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
49497687 TATAAAAATA
*
49497697 TCATTAAATTATTATTTTTATTTTATTTTAG
1 TCATTAAATTATTA-ATTT-TTTTA-TTTAG
49497728 TCATTAAATTATTAATTTTTTTATTTAG
1 TCATTAAATTATTAATTTTTTTATTTAG
49497756 TCATTAAATT
1 TCATTAAATT
49497766 TTTTGAAATC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
28 15 0.41
29 5 0.14
30 3 0.08
31 14 0.38
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (28 bp):
TCATTAAATTATTAATTTTTTTATTTAG
Found at i:49502453 original size:44 final size:42
Alignment explanation
Indices: 49502378--49502540 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 42
49502368 CTAATATGTG
* *
49502378 TTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGA
1 TTTT-GTGTAAGACCATGTCTGGGACATTGGCATCGTA-TT-TGA
* *
49502422 TTTATGTGTAAGACCATGTCTAGGATATTGGCATCGTATTTGA
1 TTT-TGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
* * * *
49502465 TTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCAATATTCGA
1 TTTTGTGTAAGACCATGTCTGGGACATTGGCATC-GTATTTGA
*** * *
49502508 TTACATGTAAGACCACGTCTGGGACTTTGGCAT
1 TTTTGTGTAAGACCATGTCTGGGACATTGGCAT
49502541 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 27 0.27
43 38 0.38
44 32 0.32
45 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (42 bp):
TTTTGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
Found at i:49502484 original size:42 final size:43
Alignment explanation
Indices: 49502378--49502498 Score: 140
Period size: 44 Copynumber: 2.8 Consensus size: 43
49502368 CTAATATGTG
*
49502378 TTTTCGTGTAAGACCAC-GTCTGGGACGTTGGCATCGACTTATGA
1 TTTT-GTGTAAGACC-CTGTCTGGGACATTGGCATCGACTTATGA
* * *
49502422 TTTATGTGTAAGACCATGTCTAGGATATTGGCATCGTA-TT-TGA
1 TTT-TGTGTAAGACCCTGTCTGGGACATTGGCATCG-ACTTATGA
*
49502465 TTTTGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 TTTTGTGTAAGACCCTGTCTGGGACATTGGCATC
49502499 AATATTCGAT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
42 27 0.41
43 6 0.09
44 31 0.47
45 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.35
Consensus pattern (43 bp):
TTTTGTGTAAGACCCTGTCTGGGACATTGGCATCGACTTATGA
Found at i:49502528 original size:43 final size:42
Alignment explanation
Indices: 49502383--49502532 Score: 128
Period size: 42 Copynumber: 3.5 Consensus size: 42
49502373 ATGTGTTTTC
*
49502383 GTGTAAGACCACGTCTGGGAC-GTTGGCATCGACT-TATGATTTAT
1 GTGTAAGACCACGTCTGGGACAG-TGGCATC-AATAT-TGA-TTAT
* * * * * *
49502427 GTGTAAGACCATGTCTAGGATATTGGCATC-GTATTTGATTTT
1 GTGTAAGACCACGTCTGGGACAGTGGCATCAATA-TTGATTAT
*
49502469 GTGTAAGACC-CTGTCTGGGACAGTGGCATCAATATTCGATTAC
1 GTGTAAGACCAC-GTCTGGGACAGTGGCATCAATATT-GATTAT
*
49502512 ATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCACGTCTGGGAC
49502533 TTTGGCATTG
Statistics
Matches: 85, Mismatches: 14, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
42 31 0.36
43 27 0.32
44 27 0.32
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACAGTGGCATCAATATTGATTAT
Found at i:49508227 original size:42 final size:43
Alignment explanation
Indices: 49508131--49508326 Score: 279
Period size: 43 Copynumber: 4.6 Consensus size: 43
49508121 TTTATTTGAA
*
49508131 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCAC
* *
49508174 AAATGCTGCTAAAGATCA-GTACCTTTAGCGGCGC-TTTCCCAC
1 AAACGCCGCTAAAGATCATG-ACCTTTAGCGGCGCTTTTCCCAC
*
49508216 CAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
49508259 AAACGCCACTAAAGATCATGACCTTTAGCAGCTCTTTTCTCAA
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCAC
*
49508302 AAACGCCGCTAAAAATCATGACCTT
1 AAACGCCGCTAAAGATCATGACCTT
49508327 GAAAAAAATT
Statistics
Matches: 136, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
42 38 0.28
43 98 0.72
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:49508236 original size:85 final size:86
Alignment explanation
Indices: 49508129--49508326 Score: 283
Period size: 85 Copynumber: 2.3 Consensus size: 86
49508119 CATTTATTTG
* * **
49508129 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAATGCTGCTAAAGATCA-G
1 AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGATCATG
*
49508193 TACCTTTAGCGGCGC-TTTCCC
66 -ACCTTTAGCAGCGCTTTTCCC
**
49508214 ACCAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGATCATG
1 AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGATCATG
* *
49508279 ACCTTTAGCAGCTCTTTTCTC
66 ACCTTTAGCAGCGCTTTTCCC
*
49508300 AAAAACGCCGCTAAAAATCATGACCTT
1 AAAAACGCCGCTAAAGATCATGACCTT
49508327 GAAAAAAATT
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
85 69 0.70
86 30 0.30
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (86 bp):
AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGATCATG
ACCTTTAGCAGCGCTTTTCCC
Found at i:49509798 original size:15 final size:16
Alignment explanation
Indices: 49509772--49509802 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
49509762 TCTCTCTTGC
49509772 TTTTAGATCATATATA
1 TTTTAGATCATATATA
49509788 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
49509803 AGACAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:49512242 original size:43 final size:43
Alignment explanation
Indices: 49512158--49512424 Score: 340
Period size: 43 Copynumber: 6.2 Consensus size: 43
49512148 CTATATGTAG
*
49512158 CGCCGCTAAAGACCAGGACTTTTAGCGACGCTTATATAAAAAA
1 CGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAA
* *
49512201 CGCCGC-AAAGACTAGGACTTATAGCGGCGCTTATATAAAAAA
1 CGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAA
* * * *
49512243 CGCCTCTAAAGACCAGGACTTTTAGTGGCGCTTTTCTAAAAAA
1 CGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAA
* *
49512286 CGCTGCTAAAGACCAGGACTTTTAGTGGCGCTTATAT-AAAAA
1 CGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAA
* * * * *
49512328 CGCCGCTAAAGACCAGGACTTATAGTGGCGTTTTTTTCAACAAAA
1 CGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTATAT-AA-AAAA
* * *
49512373 CGCCGCTAAAGACCAGGACTTTTAGCGGCACTTTTTTAAAAAA
1 CGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAA
*
49512416 GGCCGCTAA
1 CGCCGCTAA
49512425 TTTGCCCAGT
Statistics
Matches: 197, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
42 75 0.38
43 82 0.42
44 3 0.02
45 37 0.19
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (43 bp):
CGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTATATAAAAAA
Found at i:49512262 original size:85 final size:86
Alignment explanation
Indices: 49512158--49512424 Score: 358
Period size: 85 Copynumber: 3.1 Consensus size: 86
49512148 CTATATGTAG
* * * * *
49512158 CGCCGCTAAAGACCAGGACTTTTAGCGACGCTTATATAAAAAACGCCGC-AAAGACTAGGACTTA
1 CGCCGCTAAAGACCAGGACTTTTAGTGGCGCTTTTATAAAAAACGCCGCTAAAGACCAGGACTTT
49512222 TAGCGGCGCTTATATAAAAAA
66 TAGCGGCGCTTATATAAAAAA
* * *
49512243 CGCCTCTAAAGACCAGGACTTTTAGTGGCGCTTTTCTAAAAAACGCTGCTAAAGACCAGGACTTT
1 CGCCGCTAAAGACCAGGACTTTTAGTGGCGCTTTTATAAAAAACGCCGCTAAAGACCAGGACTTT
*
49512308 TAGTGGCGCTTATAT-AAAAA
66 TAGCGGCGCTTATATAAAAAA
* * *
49512328 CGCCGCTAAAGACCAGGACTTATAGTGGCGTTTTTTTCAACAAAACGCCGCTAAAGACCAGGACT
1 CGCCGCTAAAGACCAGGACTTTTAGTGGCGCTTTTAT-AA-AAAACGCCGCTAAAGACCAGGACT
* * *
49512393 TTTAGCGGCACTTTTTTAAAAAA
64 TTTAGCGGCGCTTATATAAAAAA
*
49512416 GGCCGCTAA
1 CGCCGCTAA
49512425 TTTGCCCAGT
Statistics
Matches: 159, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
85 81 0.51
86 29 0.18
87 36 0.23
88 13 0.08
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (86 bp):
CGCCGCTAAAGACCAGGACTTTTAGTGGCGCTTTTATAAAAAACGCCGCTAAAGACCAGGACTTT
TAGCGGCGCTTATATAAAAAA
Found at i:49518342 original size:39 final size:38
Alignment explanation
Indices: 49518310--49518461 Score: 197
Period size: 39 Copynumber: 4.1 Consensus size: 38
49518300 TATGTAGGTT
49518310 GTTATGT-ACGTTATGT-G-AGTTATGTAAATTATGTAA
1 GTTATGTGA-GTTATGTAGTAGTTATGTAAATTATGTAA
*
49518346 GTTATGTGAGTTATGTAAGTTGTTATGTAAATTATGTAA
1 GTTATGTGAGTTATGT-AGTAGTTATGTAAATTATGTAA
*
49518385 GTTATGTGAGTTATGTAAGTTGTTATGTAAATTATGTAA
1 GTTATGTGAGTTATGT-AGTAGTTATGTAAATTATGTAA
* * *
49518424 GTTATATGAGTTATGTA--AGTTATGTAATTTATTTAA
1 GTTATGTGAGTTATGTAGTAGTTATGTAAATTATGTAA
49518460 GT
1 GT
49518462 AATGATCAAT
Statistics
Matches: 107, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
36 32 0.30
37 1 0.01
38 2 0.02
39 72 0.67
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.47
Consensus pattern (38 bp):
GTTATGTGAGTTATGTAGTAGTTATGTAAATTATGTAA
Found at i:49518371 original size:57 final size:56
Alignment explanation
Indices: 49518295--49518461 Score: 185
Period size: 57 Copynumber: 2.9 Consensus size: 56
49518285 ATGTATTAGT
* *
49518295 TAAGTTATGTAGGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTA-GTTATGTAAGTTATGTAAATTATGTAAGTTATG
* * * *
49518352 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTTGTTATG
1 TAAGTTATGTAAGTTGTTATGT-AGTTATGTAAGTTATGTAAATTATGTAA---GTTATG
* * * *
49518412 TAAATTATGTAAGTT-ATATG-AGTTATGTAAGTTATGTAATTTATTTAAGT
1 TAAGTTATGTAAGTTGTTATGTAGTTATGTAAGTTATGTAAATTATGTAAGT
49518462 AATGATCAAT
Statistics
Matches: 93, Mismatches: 13, Indels: 11
0.79 0.11 0.09
Matches are distributed among these distances:
54 2 0.02
57 67 0.72
58 1 0.01
59 4 0.04
60 19 0.20
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.47
Consensus pattern (56 bp):
TAAGTTATGTAAGTTGTTATGTAGTTATGTAAGTTATGTAAATTATGTAAGTTATG
Found at i:49518450 original size:9 final size:9
Alignment explanation
Indices: 49518310--49518461 Score: 151
Period size: 9 Copynumber: 16.2 Consensus size: 9
49518300 TATGTAGGTT
*
49518310 GTTATGTAC
1 GTTATGTAA
*
49518319 GTTATGTGA
1 GTTATGTAA
49518328 GTTATGTAA
1 GTTATGTAA
*
49518337 ATTATGTAA
1 GTTATGTAA
*
49518346 GTTATGTGA
1 GTTATGTAA
49518355 GTTATGTAA
1 GTTATGTAA
49518364 GTTGTTATGTAA
1 ---GTTATGTAA
*
49518376 ATTATGTAA
1 GTTATGTAA
*
49518385 GTTATGTGA
1 GTTATGTAA
49518394 GTTATGTAA
1 GTTATGTAA
49518403 GTTGTTATGTAA
1 ---GTTATGTAA
*
49518415 ATTATGTAA
1 GTTATGTAA
* *
49518424 GTTATATGA
1 GTTATGTAA
49518433 GTTATGTAA
1 GTTATGTAA
49518442 GTTATGTAA
1 GTTATGTAA
* *
49518451 TTTATTTAA
1 GTTATGTAA
49518460 GT
1 GT
49518462 AATGATCAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
9 99 0.85
12 18 0.15
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.47
Consensus pattern (9 bp):
GTTATGTAA
Found at i:49518450 original size:48 final size:48
Alignment explanation
Indices: 49518295--49518450 Score: 179
Period size: 48 Copynumber: 3.2 Consensus size: 48
49518285 ATGTATTAGT
* * * *
49518295 TAAGTTATGTAGGTTGTTATGTACGTTATGTGAGTTATGTAAATTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAGTTATG
* * * * *
49518343 TAAGTTATGTGAGTTATGTAAGT-TGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGT-TATGTAAGTTATGTAAGTTATGTAAGTTATG
* * * *
49518391 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAGTTATG
49518439 TAAGTTATGTAA
1 TAAGTTATGTAA
49518451 TTTATTTAAG
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
47 4 0.05
48 80 0.91
49 4 0.05
ACGTcount: A:0.31, C:0.01, G:0.23, T:0.46
Consensus pattern (48 bp):
TAAGTTATGTAAGTTGTTATGTAAGTTATGTAAGTTATGTAAGTTATG
Found at i:49519046 original size:23 final size:23
Alignment explanation
Indices: 49519020--49519069 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
49519010 GTTCAAGTTT
49519020 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
49519043 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
49519066 ATTT
1 ATTT
49519070 GATTAATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:49521629 original size:19 final size:20
Alignment explanation
Indices: 49521590--49521641 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
49521580 TTTCGATTTT
*
49521590 GATTCGGGGAAATATTTAGG
1 GATTCGGGGAAATAGTTAGG
49521610 GATTCGGGGAAA-AGTTAGG
1 GATTCGGGGAAATAGTTAGG
*
49521629 GATTTGGGGAAAT
1 GATTCGGGGAAAT
49521642 TTGGGTGGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.31, C:0.04, G:0.38, T:0.27
Consensus pattern (20 bp):
GATTCGGGGAAATAGTTAGG
Found at i:49522756 original size:14 final size:15
Alignment explanation
Indices: 49522724--49522760 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
49522714 GAAATTTATT
49522724 TTTAGGGTTTACAAA
1 TTTAGGGTTTACAAA
*
49522739 TTTAGGGTTTA-TAA
1 TTTAGGGTTTACAAA
49522753 TTTAGGGT
1 TTTAGGGT
49522761 ATAAGGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.27, C:0.03, G:0.24, T:0.46
Consensus pattern (15 bp):
TTTAGGGTTTACAAA
Found at i:49522809 original size:37 final size:36
Alignment explanation
Indices: 49522723--49522811 Score: 88
Period size: 37 Copynumber: 2.4 Consensus size: 36
49522713 TGAAATTTAT
* *
49522723 TTTTAGGGTTTACAAATTTAGGGTTTATAATTTAGGG
1 TTTTAGGGTTTA-AAATTTAGGGTTTAGAATTTAGAG
* * * ** *
49522760 TATAAGGTTTTAAAGATTTAGTTTTTAGAGTTTAGAG
1 TTTTAGGGTTTAAA-ATTTAGGGTTTAGAATTTAGAG
49522797 TTTTAGGGTTTAAAA
1 TTTTAGGGTTTAAAA
49522812 GGTTTATAGG
Statistics
Matches: 40, Mismatches: 11, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
36 3 0.08
37 37 0.93
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.46
Consensus pattern (36 bp):
TTTTAGGGTTTAAAATTTAGGGTTTAGAATTTAGAG
Found at i:49522964 original size:29 final size:29
Alignment explanation
Indices: 49522931--49522988 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
49522921 TTAGAGTTTA
*
49522931 GATCATGGGTTATGATTTAGGGGTTAGGC
1 GATCATGGGTTATGATTTAAGGGTTAGGC
49522960 GATCATGGGTTATGATTTAAGGGTTAGGC
1 GATCATGGGTTATGATTTAAGGGTTAGGC
49522989 TTGTAACACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.07, G:0.36, T:0.34
Consensus pattern (29 bp):
GATCATGGGTTATGATTTAAGGGTTAGGC
Found at i:49523945 original size:27 final size:27
Alignment explanation
Indices: 49523908--49524046 Score: 160
Period size: 27 Copynumber: 5.1 Consensus size: 27
49523898 AGCATGGCTG
** *
49523908 CCAGA-ACAGATAATGTAACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
49523934 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
49523962 CCAGA-ACAGAAATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
49523989 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
*
49524016 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
49524043 CCAG
1 CCAG
49524047 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
26 6 0.06
27 80 0.78
28 16 0.16
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:49523999 original size:54 final size:54
Alignment explanation
Indices: 49523908--49524046 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
49523898 AGCATGGCTG
** *
49523908 CCAGAACAGATAA-TGTAACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* *
49523962 CCAGAACAGA-AATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
* *
49524016 CCAGATCAGATAATTGTGGCATAGCCACCAG
1 CCAGAACAGATAATTGTGGCAGAGCCACCAG
49524047 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 2 0.03
54 54 0.72
55 19 0.25
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATTGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:49528385 original size:40 final size:40
Alignment explanation
Indices: 49528330--49528471 Score: 241
Period size: 40 Copynumber: 3.5 Consensus size: 40
49528320 ATGATAACCA
* *
49528330 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
*
49528370 GGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
49528410 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
49528450 GGCTAAGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
49528472 AGCTATATCC
Statistics
Matches: 97, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 96 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:49532437 original size:27 final size:26
Alignment explanation
Indices: 49532402--49532513 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
49532392 AGCATGGCTG
* *
49532402 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
49532428 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
49532456 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
49532483 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
49532510 CCAG
1 CCAG
49532514 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:49532494 original size:54 final size:54
Alignment explanation
Indices: 49532402--49532513 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
49532392 AGCATGGCTG
* *
49532402 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
49532456 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
49532510 CCAG
1 CCAG
49532514 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:49535172 original size:41 final size:41
Alignment explanation
Indices: 49534977--49535173 Score: 297
Period size: 41 Copynumber: 4.8 Consensus size: 41
49534967 GGACCTAAAG
* *
49534977 CGCCACTATAT-CTCAGTTTTTTGCGGCGTTTTTCATGAAAA
1 CGCCACTAT-TGCTCAGTTTTTAGCGGCGTTTTGCATGAAAA
*
49535018 CGCCACTATTACTCAGTTTTTAGCGGCGTTTTGCATGAAAA
1 CGCCACTATTGCTCAGTTTTTAGCGGCGTTTTGCATGAAAA
49535059 CGCCACTATTGCTCAGTTTTTAGCGGCGTTTTGCATGAAAA
1 CGCCACTATTGCTCAGTTTTTAGCGGCGTTTTGCATGAAAA
* * ** *
49535100 CGCCGCTGTTGCTCAGTTTTTAATGGCGTTTTGCACGAAAA
1 CGCCACTATTGCTCAGTTTTTAGCGGCGTTTTGCATGAAAA
*
49535141 TGCCACTATTGCTCAGTTTTTAGCGGCGTTTTG
1 CGCCACTATTGCTCAGTTTTTAGCGGCGTTTTG
49535174 TTTCAAACGC
Statistics
Matches: 142, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
40 1 0.01
41 141 0.99
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (41 bp):
CGCCACTATTGCTCAGTTTTTAGCGGCGTTTTGCATGAAAA
Found at i:49536685 original size:19 final size:17
Alignment explanation
Indices: 49536653--49536692 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
49536643 TATTATTTAA
49536653 TTTTAAATTTTTTTCAT
1 TTTTAAATTTTTTTCAT
*
49536670 TTTTAACATATTTTTTTAT
1 TTTTAA-AT-TTTTTTCAT
49536689 TTTT
1 TTTT
49536693 TTCTTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 2 0.10
19 12 0.60
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTAAATTTTTTTCAT
Found at i:49536824 original size:22 final size:22
Alignment explanation
Indices: 49536799--49536840 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
49536789 ATATTAAATA
* *
49536799 TTTAAATTTTTTATTTTTTATT
1 TTTAAAATTTTTAATTTTTATT
49536821 TTTAAAATTTTTAATTTTTA
1 TTTAAAATTTTTAATTTTTA
49536841 AATTTTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTAAAATTTTTAATTTTTATT
Found at i:49536831 original size:15 final size:15
Alignment explanation
Indices: 49536792--49536847 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 15
49536782 ATATTAAATA
*
49536792 TTAAATATTTAAATTT
1 TTAAAT-TTTTAATTT
* *
49536808 TT-TATTTTTTATTT
1 TTAAATTTTTAATTT
49536822 TTAAAATTTTTAATTT
1 TT-AAATTTTTAATTT
49536838 TTAAATTTTT
1 TTAAATTTTT
49536848 TTGAAGATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 9 0.27
15 10 0.30
16 14 0.42
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTAAATTTTTAATTT
Found at i:49536846 original size:29 final size:30
Alignment explanation
Indices: 49536819--49536873 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
49536809 TTATTTTTTA
49536819 TTTTT-AA-AATTTT-TAATTTTTAAA-TT
1 TTTTTGAAGAATTTTATAATTTTTAAATTT
*
49536845 TTTTTGAAGATTTTTATAATTTTTAAATT
1 TTTTTGAAGAATTTTATAATTTTTAAATT
49536874 AACATATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.21
27 2 0.08
28 5 0.21
29 11 0.46
30 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (30 bp):
TTTTTGAAGAATTTTATAATTTTTAAATTT
Found at i:49536847 original size:8 final size:8
Alignment explanation
Indices: 49536792--49536873 Score: 62
Period size: 7 Copynumber: 9.9 Consensus size: 8
49536782 ATATTAAATA
*
49536792 TTAAATAT
1 TTAAATTT
49536800 TTAAATTT
1 TTAAATTT
*
49536808 TT-TATTT
1 TTAAATTT
*
49536815 TT-TATTT
1 TTAAATTT
49536822 TTAAAATTT
1 TT-AAATTT
49536831 TT-AATTT
1 TTAAATTT
49536838 TTAAATTTTT
1 TTAAA--TTT
49536848 TTGAAGATTT
1 TT-AA-ATTT
49536858 TTATAATTT
1 TTA-AATTT
49536867 TTAAATT
1 TTAAATT
49536874 AACATATAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 16
0.77 0.04 0.20
Matches are distributed among these distances:
7 20 0.32
8 15 0.24
9 14 0.22
10 11 0.17
11 2 0.03
12 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (8 bp):
TTAAATTT
Found at i:49537634 original size:21 final size:21
Alignment explanation
Indices: 49537620--49537666 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
49537610 CCTAACACTT
49537620 AACCCCTAACCCCTAAGCCTTA
1 AACCCC-AACCCCTAAGCCTTA
* * *
49537642 AACCCCAACCCTTAAACCATA
1 AACCCCAACCCCTAAGCCTTA
49537663 AACC
1 AACC
49537667 ATAATCCCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.38, C:0.45, G:0.02, T:0.15
Consensus pattern (21 bp):
AACCCCAACCCCTAAGCCTTA
Found at i:49537644 original size:56 final size:56
Alignment explanation
Indices: 49537539--49537644 Score: 122
Period size: 56 Copynumber: 1.9 Consensus size: 56
49537529 CATTAATTAA
* ** * * *
49537539 TCTAAGCCTTAAACTCCTAACCCCTACCCCCTAAACCCTAAATCATAAACATAATC
1 TCTAAACCTTAAAAACCTAACACCTAACCCCTAAACCCTAAACCATAAACATAATC
* * * *
49537595 TCTAAACCTTAAAAACCTAACACTTAACCCCTAACCCCTAAGCCTTAAAC
1 TCTAAACCTTAAAAACCTAACACCTAACCCCTAAACCCTAAACCATAAAC
49537645 CCCAACCCTT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
56 40 1.00
ACGTcount: A:0.39, C:0.37, G:0.02, T:0.23
Consensus pattern (56 bp):
TCTAAACCTTAAAAACCTAACACCTAACCCCTAAACCCTAAACCATAAACATAATC
Found at i:49537687 original size:14 final size:14
Alignment explanation
Indices: 49537619--49537684 Score: 51
Period size: 14 Copynumber: 4.7 Consensus size: 14
49537609 ACCTAACACT
* *
49537619 TAACCCCTAACCCC
1 TAACCCATAAACCC
* *
49537633 TAAGCCTTAAACCC
1 TAACCCATAAACCC
* * *
49537647 CAACCCTTAAACCA
1 TAACCCATAAACCC
* *
49537661 TAAACCATAATCCC
1 TAACCCATAAACCC
49537675 TAACCCATAA
1 TAACCCATAA
49537685 TCCATAAACC
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 40 1.00
ACGTcount: A:0.39, C:0.41, G:0.02, T:0.18
Consensus pattern (14 bp):
TAACCCATAAACCC
Found at i:49537855 original size:7 final size:7
Alignment explanation
Indices: 49537843--49537941 Score: 85
Period size: 7 Copynumber: 13.9 Consensus size: 7
49537833 ATTAATTAAT
49537843 CTAAACC
1 CTAAACC
49537850 CTAAACTC
1 CTAAAC-C
* *
49537858 ATAATCC
1 CTAAACC
49537865 CTAAACC
1 CTAAACC
49537872 CTAAACC
1 CTAAACC
* *
49537879 ATAAATC
1 CTAAACC
*
49537886 CTAAAAC
1 CTAAACC
*
49537893 ATAAACC
1 CTAAACC
*
49537900 CTGAACC
1 CTAAACC
49537907 CTAAACC
1 CTAAACC
49537914 ACT-AACC
1 -CTAAACC
49537921 CTTAAACC
1 C-TAAACC
49537929 CT-AACAC
1 CTAAAC-C
49537936 CTAAAC
1 CTAAAC
49537942 GTAAAACCCC
Statistics
Matches: 73, Mismatches: 13, Indels: 11
0.75 0.13 0.11
Matches are distributed among these distances:
6 4 0.05
7 54 0.74
8 15 0.21
ACGTcount: A:0.44, C:0.36, G:0.01, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:49537993 original size:15 final size:15
Alignment explanation
Indices: 49537969--49538002 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
49537959 AAACCACCTT
*
49537969 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
49537983 TAAACCCATAATCCA
1 TAAACCCATAATCCA
49537998 TAAAC
1 TAAAC
49538003 ATTAAAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:49538358 original size:40 final size:41
Alignment explanation
Indices: 49538314--49538391 Score: 99
Period size: 40 Copynumber: 1.9 Consensus size: 41
49538304 AAAAAAAGTC
*
49538314 GCTAAAGATCG-AGCAT-TAGCGGCGTTT-TTCAAAAAGCGCT
1 GCTAAAGAT-GTA-CATATAGCGGCGTTTCTTAAAAAAGCGCT
*
49538354 GCTAAAGGTGTACATATAGCGGCGTTTCTTAAAAAAGC
1 GCTAAAGATGTACATATAGCGGCGTTTCTTAAAAAAGC
49538392 ACCCCTAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
39 4 0.12
40 20 0.61
41 9 0.27
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (41 bp):
GCTAAAGATGTACATATAGCGGCGTTTCTTAAAAAAGCGCT
Found at i:49538588 original size:40 final size:40
Alignment explanation
Indices: 49538490--49538612 Score: 135
Period size: 40 Copynumber: 3.1 Consensus size: 40
49538480 CAGCGTTTTT
* * * * *
49538490 TAAAGGTGTACATATAGCGACGTTTTTCAAAAAGCGCCGT
1 TAAAAGTGTACTTATAGCGGCGTTTTTTAAAAAGCGCCGC
49538530 TAAAAGTGTACTTATAGCGGCGTTTTTTAAAAAGCGCCGC
1 TAAAAGTGTACTTATAGCGGCGTTTTTTAAAAAGCGCCGC
* * *
49538570 TAATACT-TGATCTT-TAGCGGC-ATTTTTAAAAAGCGCCGC
1 TAAAAGTGT-A-CTTATAGCGGCGTTTTTTAAAAAGCGCCGC
49538609 TAAA
1 TAAA
49538613 GCCACTAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
39 21 0.29
40 48 0.67
41 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (40 bp):
TAAAAGTGTACTTATAGCGGCGTTTTTTAAAAAGCGCCGC
Found at i:49538769 original size:40 final size:40
Alignment explanation
Indices: 49538692--49538775 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
49538682 GTACATATAG
* *
49538692 CGGCGTTTTTAAAAAAGTGCCGCTAATACTTGATCTTTAA
1 CGGCATTTTTAAAAAAGTGCCGCTAATACTTCATCTTTAA
* * *
49538732 CGGCATTTTTTAAAAAGTGCCGCTAATGC-TCATTCTTTAG
1 CGGCATTTTTAAAAAAGTGCCGCTAATACTTCA-TCTTTAA
49538772 CGGC
1 CGGC
49538776 GCTTTTCATT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
39 2 0.05
40 36 0.95
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (40 bp):
CGGCATTTTTAAAAAAGTGCCGCTAATACTTCATCTTTAA
Found at i:49541211 original size:55 final size:54
Alignment explanation
Indices: 49541103--49541310 Score: 224
Period size: 55 Copynumber: 3.8 Consensus size: 54
49541093 ATTAGGGTTT
* * *
49541103 AAGGATACCATGTAAGACCATGCCAAGGCATGTCAATTGGTAACGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGC
* * * *
49541158 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC
* * ** * *
49541213 AAAGG-TCCCATGTAAGACCGTGCCAAGGTATGGCATTGGTGAGTTC-ATAAGTC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* *
49541266 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
49541311 TCAAAAGGAT
Statistics
Matches: 125, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
52 4 0.03
53 42 0.34
54 8 0.06
55 67 0.54
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:49541309 original size:108 final size:110
Alignment explanation
Indices: 49541110--49541310 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
49541100 TTTAAGGATA
* *
49541110 CCATGTAAGACCATGCCAAGGCATGTCAATTGGTAACGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAACGTTTCTAAGGCAAGGAAACCATGTAAGA
*
49541175 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * * *
49541220 CCATGTAAGACCGTGCCAAGGTATGGC-ATTGGTGA-G-TTCATAAGTCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAACGTTTC-TAAGGCAAGGAAACCATGTAAG
*
49541282 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
49541311 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAACGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:49541452 original size:23 final size:24
Alignment explanation
Indices: 49541426--49541473 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
49541416 AAGGTAAGGT
*
49541426 AAGGTAAGACGAGTT-ATACTAAA
1 AAGGTAAGACAAGTTCATACTAAA
*
49541449 AAGGTAAGACAAGTTCATGCTAAA
1 AAGGTAAGACAAGTTCATACTAAA
49541473 A
1 A
49541474 GAGCAAAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATACTAAA
Found at i:49541570 original size:16 final size:16
Alignment explanation
Indices: 49541549--49541579 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49541539 ATAAATTTGA
49541549 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
49541565 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
49541580 AAGTGAAGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:49550673 original size:13 final size:13
Alignment explanation
Indices: 49550657--49550699 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
49550647 GAGAGATTTT
49550657 AGGGATTTGGCAG
1 AGGGATTTGGCAG
*
49550670 AGGGAATTGG-AG
1 AGGGATTTGGCAG
49550682 AGGGGATTTCGGCAG
1 A-GGGATTT-GGCAG
49550697 AGG
1 AGG
49550700 AGTATTAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 3 0.12
13 15 0.60
14 4 0.16
15 3 0.12
ACGTcount: A:0.26, C:0.07, G:0.49, T:0.19
Consensus pattern (13 bp):
AGGGATTTGGCAG
Found at i:49551905 original size:25 final size:25
Alignment explanation
Indices: 49551876--49551923 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
49551866 TTATAATATG
** *
49551876 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
49551901 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
49551924 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:49552082 original size:25 final size:25
Alignment explanation
Indices: 49552054--49552148 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
49552044 GAGGAAGTGC
*
49552054 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
49552079 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * * *
49552104 AAAAGGGCTTTACCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
49552129 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
49552149 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:49552161 original size:24 final size:23
Alignment explanation
Indices: 49552053--49552175 Score: 102
Period size: 25 Copynumber: 5.0 Consensus size: 23
49552043 GGAGGAAGTG
* *
49552053 CAAAAGGGCTATGCCCCAGTTTAC
1 CAAAAGGGCTTTGCCCCAG-TTAT
*
49552077 CGAAAAGGGCTTTGCCCCAGTTTAC
1 C-AAAAGGGCTTTGCCCCAG-TTAT
* *
49552102 CGAAAAGGGCTTTACCCCAATTTAT
1 C-AAAAGGGCTTTGCCCC-AGTTAT
49552127 CAAAAAGGGCTTTGCCCCAGTTAT
1 C-AAAAGGGCTTTGCCCCAGTTAT
* **
49552151 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAG-GGCTTTGCC-CCAGTTAT
49552176 ATGATAAAGT
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.06
24 13 0.15
25 66 0.78
26 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.24
Consensus pattern (23 bp):
CAAAAGGGCTTTGCCCCAGTTAT
Found at i:49552405 original size:31 final size:31
Alignment explanation
Indices: 49552370--49552479 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
49552360 CGTTTGCAGT
49552370 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
49552401 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * * *
49552432 AAAGGCTTCGGCCCAGTGACATGGATAACGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
49552463 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
49552480 ATCTGCTGAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:49555541 original size:40 final size:40
Alignment explanation
Indices: 49555488--49555566 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
49555478 CTTAGAGCCA
* * *
49555488 CATAAAGCTGAAGCTAT-TCGAATTTGCACACTAAGTGCTG
1 CATAAAGCCGAAGCTATCTCGAA-ATGCACACTAAATGCTG
*
49555528 CATATAGCCGAAGCTATCTCGAAATGCACACTAAATGCT
1 CATAAAGCCGAAGCTATCTCGAAATGCACACTAAATGCT
49555567 AAATATAGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 29 0.85
41 5 0.15
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (40 bp):
CATAAAGCCGAAGCTATCTCGAAATGCACACTAAATGCTG
Found at i:49555573 original size:40 final size:40
Alignment explanation
Indices: 49555497--49555574 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
49555487 ACATAAAGCT
* * **
49555497 GAAGCTATTCGAATTTGCACACTAAGTGCTGCATATAGCC
1 GAAGCTATTCGAATATGCACACTAAATGCTAAATATAGCC
49555537 GAAGCTATCTCGAA-ATGCACACTAAATGCTAAATATAG
1 GAAGCTAT-TCGAATATGCACACTAAATGCTAAATATAG
49555575 TAGATTTGTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 28 0.85
41 5 0.15
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (40 bp):
GAAGCTATTCGAATATGCACACTAAATGCTAAATATAGCC
Found at i:49558922 original size:40 final size:40
Alignment explanation
Indices: 49558867--49559087 Score: 320
Period size: 40 Copynumber: 5.5 Consensus size: 40
49558857 TATTCGGATG
49558867 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACT
*
49558907 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACT
* *
49558947 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACT
** *
49558987 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCT-AGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TAAGTTACT
** * *
49559027 ATATCCGGGCTAAAACCCGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACT
*
49559067 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
49559088 ATACTTGGGT
Statistics
Matches: 166, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 150 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACT
Found at i:49562921 original size:172 final size:172
Alignment explanation
Indices: 49562718--49563047 Score: 606
Period size: 172 Copynumber: 1.9 Consensus size: 172
49562708 GTACAAGTCA
*
49562718 GTATACCCCCTAATTGGCACACGGCCTAGCACACGGGCTTGTGACTTAGCCGTGTTGCATAAGTC
1 GTATACCCCCTAATTGGCACACGGCCTAGCACACGGGCTTGTGACTTAGCCGTATTGCATAAGTC
* *
49562783 AGTATACCTTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCTACTT
66 AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCCACTT
49562848 CGAAGGGTACACGGGCTAGACAAACGGGAGTGTCGTTGAAGG
131 CGAAGGGTACACGGGCTAGACAAACGGGAGTGTCGTTGAAGG
*
49562890 GTATACCCCCTAATTGGCACACGGCCTAGCACACGGGCTTGTGACTTAGTCGTATTGCATAAGTC
1 GTATACCCCCTAATTGGCACACGGCCTAGCACACGGGCTTGTGACTTAGCCGTATTGCATAAGTC
*
49562955 AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGGCTTGGCACACGGACGTGTGTGGCCACTT
66 AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCCACTT
*
49563020 CGAAGGGTACACGGGCTAGACACACGGG
131 CGAAGGGTACACGGGCTAGACAAACGGG
49563048 TGTATCATCG
Statistics
Matches: 152, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
172 152 1.00
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (172 bp):
GTATACCCCCTAATTGGCACACGGCCTAGCACACGGGCTTGTGACTTAGCCGTATTGCATAAGTC
AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCCACTT
CGAAGGGTACACGGGCTAGACAAACGGGAGTGTCGTTGAAGG
Found at i:49572943 original size:40 final size:40
Alignment explanation
Indices: 49572884--49573151 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
49572874 GAGCATTGGA
*
49572884 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
49572924 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
49572964 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
49573004 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
49573044 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
49573084 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
49573124 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
49573152 ATGTGTTTGC
Statistics
Matches: 219, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 219 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:49577002 original size:55 final size:54
Alignment explanation
Indices: 49576907--49577056 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
49576897 CTACTTTGTT
* ** * *
49576907 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
49576961 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
49577016 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
49577057 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:49577019 original size:27 final size:27
Alignment explanation
Indices: 49576879--49577056 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
49576869 TAAATTGTAC
49576879 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
49576906 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
49576932 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
49576960 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
49576988 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
49577015 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
49577042 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49577057 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:49577020 original size:82 final size:81
Alignment explanation
Indices: 49576880--49577035 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
49576870 AAATTGTACA
* * * *
49576880 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
49576945 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
49576961 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
49577024 TGTGCGAGTTGA
63 TGTGCGAATTGA
49577036 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:49584918 original size:27 final size:27
Alignment explanation
Indices: 49584880--49584948 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
49584870 TTCTCTTTGT
*
49584880 TGCACTAAGTGTGCGAAATGAATATGA
1 TGCACTAAGTGTGCGAAATGAACATGA
* * *
49584907 TGCACTAAGTGTGCGAATTGACCATGC
1 TGCACTAAGTGTGCGAAATGAACATGA
*
49584934 GGCACTAAGTGTGCG
1 TGCACTAAGTGTGCG
49584949 GGTTTGACTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (27 bp):
TGCACTAAGTGTGCGAAATGAACATGA
Found at i:49584966 original size:28 final size:28
Alignment explanation
Indices: 49584881--49584976 Score: 90
Period size: 27 Copynumber: 3.5 Consensus size: 28
49584871 TCTCTTTGTT
* **
49584881 GCACTAAGTGTGC-GAAATGAATATG-A
1 GCACTAAGTGTGCGGAATTGACCATGCA
*
49584907 TGCACTAAGTGTGC-GAATTGACCATGCG
1 -GCACTAAGTGTGCGGAATTGACCATGCA
** * *
49584935 GCACTAAGTGTGCGGGTTTGACTATGTA
1 GCACTAAGTGTGCGGAATTGACCATGCA
49584963 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49584977 ATTGATTACG
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 35 0.60
28 23 0.40
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (28 bp):
GCACTAAGTGTGCGGAATTGACCATGCA
Found at i:49585019 original size:80 final size:81
Alignment explanation
Indices: 49584881--49585029 Score: 176
Period size: 80 Copynumber: 1.9 Consensus size: 81
49584871 TCTCTTTGTT
* * * *
49584881 GCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGT
1 GCACTAAGTGTGCGAAATGAATACGATGCACTAAATGTGCGAATTGACCATACAGCACTAAGTGT
49584946 GCGGGTTTGACTATGTA
66 -CGGGTTTGACTATGTA
* * * ** * *
49584963 GCACTAAGTGTGCG-ATTGATTACG-TGCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGT
1 GCACTAAGTGTGCGAAATGAATACGATGCACTAAATGTGCGAATTGACCATACAGCACTAAGTGT
49585026 CGGG
66 CGGG
49585030 CTCAATAATT
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
79 4 0.07
80 31 0.55
81 7 0.12
82 14 0.25
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAAATGAATACGATGCACTAAATGTGCGAATTGACCATACAGCACTAAGTGT
CGGGTTTGACTATGTA
Found at i:49588433 original size:23 final size:23
Alignment explanation
Indices: 49588346--49588433 Score: 88
Period size: 23 Copynumber: 3.8 Consensus size: 23
49588336 GATATATTAG
* *
49588346 CTCGTAAGAGCTTACTGTTCTCAC
1 CTCGTCAGAGCTTACTGTT-TCAA
* * * *
49588370 CTC-TTATGAGATTACTGGTTCAT
1 CTCGTCA-GAGCTTACTGTTTCAA
*
49588393 CTCGTCAAAGCTTACTGTTTCAA
1 CTCGTCAGAGCTTACTGTTTCAA
49588416 CTCGTCAGAGCTTACTGT
1 CTCGTCAGAGCTTACTGT
49588434 GCATCAGCTC
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
23 37 0.71
24 15 0.29
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (23 bp):
CTCGTCAGAGCTTACTGTTTCAA
Found at i:49589768 original size:43 final size:41
Alignment explanation
Indices: 49589721--49589806 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 41
49589711 TGATATTTGA
49589721 ATATGAATGCATAAATGTACGAATTGTAGGTTAAATGATGTGT
1 ATATGAATGCATAAATGTACGAATTGTAGGTT-AA-GATGTGT
*
49589764 ATATGAATGCATAAATGTATGAATTGTAGGTTAAGATGTGT
1 ATATGAATGCATAAATGTACGAATTGTAGGTTAAGATGTGT
49589805 AT
1 AT
49589807 TGATCGATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
41 9 0.21
42 2 0.05
43 31 0.74
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.36
Consensus pattern (41 bp):
ATATGAATGCATAAATGTACGAATTGTAGGTTAAGATGTGT
Found at i:49593539 original size:41 final size:43
Alignment explanation
Indices: 49593443--49593567 Score: 132
Period size: 43 Copynumber: 2.9 Consensus size: 43
49593433 AACGTCCTGG
* * *
49593443 ACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAG
1 ACATGGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAA
* *
49593486 ACAGGGTCTTACACGAAATCAAAT-T-GATGTCGA-TGTCCCAA
1 ACATGGTCTTACACGAAATCAAATATCGATG-CCACTGTCCCAA
* *
49593527 ACATGGTATTACACGTAAATCATAA-ATCGATGCCAATGTCC
1 ACATGGTCTTACACG-AAATCA-AATATCGATGCCACTGTCC
49593568 TCGATGTGGT
Statistics
Matches: 68, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
41 24 0.35
42 9 0.13
43 26 0.38
44 9 0.13
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (43 bp):
ACATGGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAA
Found at i:49594332 original size:19 final size:18
Alignment explanation
Indices: 49594300--49594338 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
49594290 ACTAAGCAAG
49594300 ATTACAAAAACGAA-AAA
1 ATTACAAAAACGAACAAA
49594317 ATTATCAAAAATCGAACAAA
1 ATTA-CAAAAA-CGAACAAA
49594337 AT
1 AT
49594339 ACATACCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 6 0.32
19 4 0.21
20 5 0.26
ACGTcount: A:0.64, C:0.13, G:0.05, T:0.18
Consensus pattern (18 bp):
ATTACAAAAACGAACAAA
Found at i:49607224 original size:32 final size:31
Alignment explanation
Indices: 49607154--49607241 Score: 95
Period size: 32 Copynumber: 2.8 Consensus size: 31
49607144 ATTGTCAATG
*
49607154 ATTTCAATATCCAACAAGCTTAAAACATAATA
1 ATTTCAATATCCAACAA-ATTAAAACATAATA
* * * *
49607186 AATTCAATATCTAACAAATTCAAGACATGATA
1 ATTTCAATATCCAACAAATT-AAAACATAATA
* *
49607218 ATTTCAAAATCCAACAAACTAAAA
1 ATTTCAATATCCAACAAATTAAAA
49607242 TTTCAATATC
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
31 5 0.11
32 40 0.89
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.26
Consensus pattern (31 bp):
ATTTCAATATCCAACAAATTAAAACATAATA
Found at i:49608843 original size:79 final size:80
Alignment explanation
Indices: 49608744--49608926 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 80
49608734 TACTCGTTCA
* * *
49608744 AATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
49608807 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* * **
49608824 AATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCACAAATGTCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
49608888 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
49608903 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
49608927 CATCATTCGA
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 26 0.30
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:49608872 original size:39 final size:40
Alignment explanation
Indices: 49608770--49608873 Score: 156
Period size: 39 Copynumber: 2.6 Consensus size: 40
49608760 AGCCCGGTTA
* *
49608770 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGAAT
* *
49608810 TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCAGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGAAT
*
49608849 TAGTAACTCGCACAAATGTCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
49608874 ATCTTAGTCC
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 33 0.57
40 25 0.43
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGAAT
Found at i:49608926 original size:40 final size:40
Alignment explanation
Indices: 49608723--49608926 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
49608713 CGGAATTTAA
** * *
49608723 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49608763 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49608803 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
49608842 CCAGA-ATTAGTAACTCGCACAAATGTCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
49608882 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
49608922 CCGGA
1 CCGGA
49608927 CATCATTCGA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 91 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:49611805 original size:41 final size:40
Alignment explanation
Indices: 49611678--49611822 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
49611668 CTCGCACAAG
* * * * * *
49611678 GCCTTCGGGTCTTAACCCGAATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
49611718 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
49611758 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
49611799 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
49611823 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:49619690 original size:39 final size:40
Alignment explanation
Indices: 49619645--49619812 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
49619635 CGGGGTTTAG
* * *
49619645 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
49619684 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
49619724 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
49619764 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
49619805 CCGGATAT
1 CCGGATAT
49619813 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:49619795 original size:41 final size:40
Alignment explanation
Indices: 49619668--49619812 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
49619658 CTCGCACAAG
* * * * *
49619668 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
49619708 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
49619748 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
49619789 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
49619813 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:49623058 original size:46 final size:46
Alignment explanation
Indices: 49622960--49623081 Score: 149
Period size: 46 Copynumber: 2.6 Consensus size: 46
49622950 TGATTTGAGG
*
49622960 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAGACGTAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTAA
* * *
49623006 GCTAGTGTTAGACATGTCTTGGACATGCATCGG-CTACGAGATG-ATA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCT-CGAGACGTA-A
* *
49623052 GTTAGTGTAAGACCATGTCTGGGACATGCA
1 GCTAGTGTAAGA-CATGTCTAGGACATGCA
49623082 CCGGTACCTT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
45 3 0.05
46 47 0.71
47 16 0.24
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTAA
Found at i:49624228 original size:21 final size:22
Alignment explanation
Indices: 49624189--49624229 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
49624179 TTGGAATGCT
*
49624189 CACATGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
49624211 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
49624230 GTGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:49633810 original size:46 final size:46
Alignment explanation
Indices: 49633757--49633977 Score: 182
Period size: 46 Copynumber: 4.7 Consensus size: 46
49633747 ATTCTTGTGT
*
49633757 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATGATGA
* * * *
49633803 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATTGG-CA-TTGAGATGA
1 GAGCTAGTGTAA-AACATGTCTGGGACAT-GCATCGGCCACAT--GATGA
* * * * * *
49633851 GGGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGACGTA
1 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATGATG-A
* * *
49633898 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGA
1 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCAC-ATGATGA
* *
49633943 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCT-AGTGTAA-AACATGTCTGGGACAT-GCATC
49633978 AACTTGAGAT
Statistics
Matches: 141, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
45 1 0.01
46 67 0.48
47 47 0.33
48 26 0.18
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATGATGA
Found at i:49633977 original size:94 final size:94
Alignment explanation
Indices: 49633759--49634028 Score: 266
Period size: 94 Copynumber: 2.9 Consensus size: 94
49633749 TCTTGTGTGA
* ** * *
49633759 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACCATGTC
* * *
49633824 TAGGACATGGCATTGGCATTGAGATGAGG
66 TAGGACATGGCATCGGCATCGAGATGAAG
* *
49633853 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGACGTA-AGCCAGTGTAAGA-CATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACG-AGAGCCAGTGTAAGACCATGT
*
49633916 CTGGGACAT-GCATCGGC-TACGAGATGATAG
65 CTAGGACATGGCATCGGCAT-CGAGATGA-AG
* ** *** * *
49633946 TC-AGTGTAAGACCATGTCTGGGACATGGCATC-AACTTGAGA-TATGAGCCAGTGTAAGACCGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAAGACGA-GAGCCAGTGTAAGACCAT
49634008 GTCTAGGACATGGCATCGGCA
63 GTCTAGGACATGGCATCGGCA
49634029 CCTTACCCTA
Statistics
Matches: 146, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
91 2 0.01
92 23 0.16
93 46 0.32
94 66 0.45
95 9 0.06
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACCATGTC
TAGGACATGGCATCGGCATCGAGATGAAG
Found at i:49633987 original size:47 final size:48
Alignment explanation
Indices: 49633762--49634027 Score: 223
Period size: 47 Copynumber: 5.7 Consensus size: 48
49633752 TGTGTGAGCT
* * * * *
49633762 AGTGTAA-AACATGTCTGGGACAT-GCATCGGC-C-ACATTATGAGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATGAT-A-AGCC
* * ** *
49633808 AGTGTAAGACCATGTCTAGGACATGGCATTGGCATTGAGATGA-GGGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGC-TCGAGATGATAAGCC
* *
49633856 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCAAGACG-TAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CTCGAGATGATAAGCC
* *
49633902 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCT-CGAGATGATAAGCC
* ** * *
49633948 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGAT-ATGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATGATAAGCC
*
49633995 AGTGTAAGACCGTGTCTAGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
49634028 ACCTTACCCT
Statistics
Matches: 181, Mismatches: 27, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.01
46 68 0.38
47 81 0.45
48 26 0.14
51 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATGATAAGCC
Found at i:49634011 original size:140 final size:141
Alignment explanation
Indices: 49633762--49634027 Score: 362
Period size: 140 Copynumber: 1.9 Consensus size: 141
49633752 TGTGTGAGCT
*
49633762 AGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTAG
1 AGTGTAAAACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGTCTAG
*** * *
49633827 GACATGGCATTGGCATTGAGATGAGGGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCA
66 GACATGGCATCAACATTGAGATGAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCA
49633891 AGACGTAAGCC
131 AGACGTAAGCC
* * *
49633902 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAG-TCAGTGTAAGACCATGTCT
1 AGTGTAAAACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCT-AGTGTAAGACCATGTCT
* *
49633965 GGGACATGGCATCAAC-TTGAGAT-ATGAGCCAGTGTAAGACCGTGTCTAGGACATGGCATCGGC
64 AGGACATGGCATCAACATTGAGATGA-GAGCCAGTGTAAGA-CATGTCTAGGACATGGCATCGGC
49634028 ACCTTACCCT
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.18
140 80 0.73
141 9 0.08
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (141 bp):
AGTGTAAAACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGTCTAG
GACATGGCATCAACATTGAGATGAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCA
AGACGTAAGCC
Found at i:49637766 original size:27 final size:26
Alignment explanation
Indices: 49637736--49638021 Score: 297
Period size: 27 Copynumber: 10.7 Consensus size: 26
49637726 CTCGATTAGC
49637736 AAAATTACCAAAATACTCCTGGTTTGT
1 AAAATTACCAAAATAC-CCTGGTTTGT
*
49637763 AAAATTACCAAAATACCTCTGGTTTAT
1 AAAATTACCAAAATACC-CTGGTTTGT
*
49637790 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGT
* *
49637817 -GAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGT
* * **
49637843 GAAATTACTAAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCT-GGTTTGT
**
49637870 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCC-TGGTTTGT
* *
49637897 AAAATTACCAAAATAGCCTTGATTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGT
* ** **
49637924 GAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCT-GGTTTGT
**
49637951 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCC-TGGTTTGT
49637978 AAAATTACC-AAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCC-TGGTTTGT
49638004 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
49638022 CTGTAGGGTA
Statistics
Matches: 217, Mismatches: 33, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
26 55 0.25
27 156 0.72
28 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGGTTTGT
Found at i:49637930 original size:81 final size:81
Alignment explanation
Indices: 49637735--49638021 Score: 373
Period size: 80 Copynumber: 3.6 Consensus size: 81
49637725 CCTCGATTAG
* * ** *
49637735 CAAAATTACCAAAATACTCCTGGTTTGTAAAATTACCAAAATA-CCTCTGGTTTATAAAATTACC
1 CAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTC-GACTTGTAAAATTACC
* *
49637799 AAAATACCCCTAGTTT-
65 AAAATACCCTTGGTTTA
*** * *
49637815 GTGAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCCTCGACTTGTAAAATTACCA
1 CAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCA
49637880 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
* * * **
49637896 CAAAATTACCAAAATAGCCTTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTACCA
1 CAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCA
49637961 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
* *
49637977 CAAAATTACC-AAATACCCTTGGTTTGTAAAATTACCAAAATACCC
1 CAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
49638022 CTGTAGGGTA
Statistics
Matches: 182, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
80 93 0.51
81 89 0.49
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
CAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCA
AAATACCCTTGGTTTA
Found at i:49638036 original size:27 final size:27
Alignment explanation
Indices: 49638006--49638202 Score: 223
Period size: 27 Copynumber: 7.3 Consensus size: 27
49637996 TGGTTTGTAA
49638006 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
**
49638033 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
49638060 AGTTACCAAAATACCCTTGTTGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
** * *
49638087 AAACATCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
49638114 AATTATCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
49638141 AAATACCAAAATACCCCTGTATGCTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
49638168 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
49638195 AATTACCA
1 AATTACCA
49638203 TTTTGCCCCT
Statistics
Matches: 138, Mismatches: 32, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:49638039 original size:107 final size:106
Alignment explanation
Indices: 49637722--49638048 Score: 378
Period size: 107 Copynumber: 3.0 Consensus size: 106
49637712 ATTACCGTTT
*
49637722 TACCCTCGATTAGCAAAATTACCAAAATACTCC-TGGTTTGTAAAATTACCAAAATA-CCTCTGG
1 TACCCTCGATT-GTAAAATTACCAAAATAC-CCTTGGTTTGTAAAATTACCAAAATACCCT-TGG
**
49637785 TTTATAAAATTACCAAAATACCCCTAGT-TTGTGAATTACCAAAA
63 TTTATAAAATTACCAAAATACCCCT-GTATTGTGAATTACTGAAA
* * * **
49637829 TACCC-CTGATTTGTGAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAATACCCTTGGT
1 TACCCTC-GA-TTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGT
* * *
49637893 TTACAAAATTACCAAAATAGCCTTG-ATTTGTGAAATTACTGAAA
64 TTATAAAATTACCAAAATACCCCTGTA-TTGTG-AATTACTGAAA
**
49637937 TACCCTCGACTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACC-AAATACCCTTGGTT
1 TACCCTCGA-TTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTT
* **
49638001 TGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAA
65 TATAAAATTACCAAAATACCCCTGTATTGT-GAATTACTGAAA
49638044 TACCC
1 TACCC
49638049 CTGTAGGGTA
Statistics
Matches: 185, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
106 4 0.02
107 124 0.67
108 56 0.30
109 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (106 bp):
TACCCTCGATTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTT
ATAAAATTACCAAAATACCCCTGTATTGTGAATTACTGAAA
Found at i:49661324 original size:27 final size:26
Alignment explanation
Indices: 49661293--49661386 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 26
49661283 TACACCTTAG
*
49661293 CTCGCCCAAACAACTGGTGAACCTCAA
1 CTCG-CCAAACAACTGGCGAACCTCAA
* *
49661320 CTCGCTAAACAAACTGGCGAACCTCAG
1 CTCGCCAAAC-AACTGGCGAACCTCAA
49661347 CTCGCCAAACACACTGGCGAA-C-CAA
1 CTCGCCAAACA-ACTGGCGAACCTCAA
*
49661372 CTCGCTAAACCAACT
1 CTCGCCAAA-CAACT
49661387 ATCAAACCCA
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
25 13 0.22
26 9 0.16
27 36 0.62
ACGTcount: A:0.34, C:0.37, G:0.15, T:0.14
Consensus pattern (26 bp):
CTCGCCAAACAACTGGCGAACCTCAA
Found at i:49662740 original size:35 final size:35
Alignment explanation
Indices: 49662641--49662740 Score: 112
Period size: 35 Copynumber: 2.9 Consensus size: 35
49662631 TAACATAGTG
* *** *
49662641 GCATGCTTAACATTG-GAATCAAAATCAGATTTATG
1 GCATGCTTAACA-TGCGAATCATAATCAGAACAATA
* **
49662676 GCATGCTTAACATGCGAATTATAGGCAGAACAATA
1 GCATGCTTAACATGCGAATCATAATCAGAACAATA
49662711 GCATGCTTAACATGCGAATCATAATCAGAA
1 GCATGCTTAACATGCGAATCATAATCAGAA
49662741 TATTCAAAAT
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
34 2 0.04
35 51 0.96
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (35 bp):
GCATGCTTAACATGCGAATCATAATCAGAACAATA
Found at i:49664968 original size:288 final size:288
Alignment explanation
Indices: 49664452--49665027 Score: 1107
Period size: 288 Copynumber: 2.0 Consensus size: 288
49664442 CCTACCACAG
49664452 TTGTCCCATTTCCAGTCCGCAACGATAGACTCTTATCTTTAAAATCTTTCATCTCATCGAACCCC
1 TTGTCCCATTTCCAGTCCGCAACGATAGACTCTTATCTTTAAAATCTTTCATCTCATCGAACCCC
49664517 TATAGAGAAACACATACATAATTAGTGGCTCCCGAATCAATGGCCTAATGGTCTATTGAATCCTT
66 TATAGAGAAACACATACATAATTAGTGGCTCCCGAATCAATGGCCTAATGGTCTATTGAATCCTT
*
49664582 CACTAAACAAGCTTCTATCATTAAAAGTTTTATATATCTGCCTTTGGTGGTCAAGTATTCTTTCC
131 CACTAAACAAGCTTCTATCATTAAAAGTTTCATATATCTGCCTTTGGTGGTCAAGTATTCTTTCC
49664647 ATTCTTTACTATTTGCCTTGAAATGCCCTTTCTTACTGCAAAAGAGACATTTAGACCTAGATAAG
196 ATTCTTTACTATTTGCCTTGAAATGCCCTTTCTTACTGCAAAAGAGACATTTAGACCTAGATAAG
49664712 TCTTTAGGCTTTCTAGCTCTCTTCCTTT
261 TCTTTAGGCTTTCTAGCTCTCTTCCTTT
49664740 TTGTCCCATTTCCAGTCCGCAACGATAGACTCTTATCTTTAAAATCTTTCATCTCATCGAACCCC
1 TTGTCCCATTTCCAGTCCGCAACGATAGACTCTTATCTTTAAAATCTTTCATCTCATCGAACCCC
*
49664805 TATAGAGAAACGCATACATAATTAGTGGCTCCCGAATCAATGGCCTAATGGTCTATTGAATCCTT
66 TATAGAGAAACACATACATAATTAGTGGCTCCCGAATCAATGGCCTAATGGTCTATTGAATCCTT
49664870 CACTAAACAAGCTTCTATCATTAAAAGTTTCATATATCTGCCTTTGGTGGTCAAGTATTCTTTCC
131 CACTAAACAAGCTTCTATCATTAAAAGTTTCATATATCTGCCTTTGGTGGTCAAGTATTCTTTCC
* *
49664935 ATTCTTTACTGTTTGCCTTGAAATGCCCTTTCTTACTGCAAAAGAGACATTTAGACTTAGATAAG
196 ATTCTTTACTATTTGCCTTGAAATGCCCTTTCTTACTGCAAAAGAGACATTTAGACCTAGATAAG
*
49665000 TCTTTAGGCTTTCTAGCTGTCTTCCTTT
261 TCTTTAGGCTTTCTAGCTCTCTTCCTTT
49665028 CCACTTATGG
Statistics
Matches: 283, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
288 283 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36
Consensus pattern (288 bp):
TTGTCCCATTTCCAGTCCGCAACGATAGACTCTTATCTTTAAAATCTTTCATCTCATCGAACCCC
TATAGAGAAACACATACATAATTAGTGGCTCCCGAATCAATGGCCTAATGGTCTATTGAATCCTT
CACTAAACAAGCTTCTATCATTAAAAGTTTCATATATCTGCCTTTGGTGGTCAAGTATTCTTTCC
ATTCTTTACTATTTGCCTTGAAATGCCCTTTCTTACTGCAAAAGAGACATTTAGACCTAGATAAG
TCTTTAGGCTTTCTAGCTCTCTTCCTTT
Found at i:49665208 original size:30 final size:30
Alignment explanation
Indices: 49665172--49665233 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
49665162 GATCGTAACT
*
49665172 CATTCATGAGTTGTGTTGCAGCCCGGAAGC
1 CATTCATGAGTTGTGTTGCAGCCCAGAAGC
49665202 CATTCATGAGTTGTGTTGCAGCCCAGAAGC
1 CATTCATGAGTTGTGTTGCAGCCCAGAAGC
49665232 CA
1 CA
49665234 GCAAAGTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (30 bp):
CATTCATGAGTTGTGTTGCAGCCCAGAAGC
Found at i:49676319 original size:26 final size:24
Alignment explanation
Indices: 49676274--49676322 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
49676264 TTTAATCATT
* *
49676274 TTTATTTTCTTTCTTGTTTATTTA
1 TTTATTTTCTCTCTTATTTATTTA
49676298 TTTATTTTCTCTCAATTATTTATTT
1 TTTATTTTCTCTC--TTATTTATTT
49676323 TATGGTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
26 9 0.43
ACGTcount: A:0.16, C:0.10, G:0.02, T:0.71
Consensus pattern (24 bp):
TTTATTTTCTCTCTTATTTATTTA
Found at i:49677667 original size:47 final size:46
Alignment explanation
Indices: 49677606--49677727 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 46
49677596 GCATTGGCAC
49677606 TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAG-ATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
49677653 TAAGACAATGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAA-GATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
49677700 TAAAATAAGGATATCATGTAAGACCATG
1 TAAGACAA-GATACCATGTAAGACCATG
49677728 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
47 69 0.99
48 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (46 bp):
TAAGACAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:49677770 original size:54 final size:54
Alignment explanation
Indices: 49677706--49677889 Score: 246
Period size: 55 Copynumber: 3.4 Consensus size: 54
49677696 TTGGTAAAAT
* *
49677706 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * * *
49677760 AAGGAAATCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* *
49677815 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
*
49677868 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
49677890 TAAAGAAATG
Statistics
Matches: 113, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
52 4 0.04
53 22 0.19
54 41 0.36
55 42 0.37
56 4 0.04
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:49680142 original size:49 final size:49
Alignment explanation
Indices: 49680072--49680628 Score: 958
Period size: 49 Copynumber: 11.6 Consensus size: 49
49680062 CCCTTCGGGA
*
49680072 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49680119 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49680168 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49680217 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49680264 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49680311 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49680362 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49680411 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49680458 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49680507 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49680556 CTTATCAC--ATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49680603 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
49680629 CACAATTATC
Statistics
Matches: 490, Mismatches: 10, Indels: 20
0.94 0.02 0.04
Matches are distributed among these distances:
47 200 0.41
48 1 0.00
49 242 0.49
51 47 0.10
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49680335 original size:145 final size:144
Alignment explanation
Indices: 49680072--49680628 Score: 969
Period size: 145 Copynumber: 3.9 Consensus size: 144
49680062 CCCTTCGGGA
* *
49680072 CTTATCAC-ATTTATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
49680136 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
* *
49680201 ACATTGGCCATTCGGC
129 ACATCGGCCATTAGGC
49680217 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
49680281 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATC
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATC
49680346 ACATCGGCCATTAGGC
129 ACATCGGCCATTAGGC
*
49680362 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
49680427 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
49680492 CATCGGCCATTAGGC
130 CATCGGCCATTAGGC
*
49680507 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
49680572 ACTTTCACATTCATCACACCGGCCATTAGGCCTTATCACATATATATACA--TTCACAT
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
49680629 CACAATTATC
Statistics
Matches: 402, Mismatches: 6, Indels: 10
0.96 0.01 0.02
Matches are distributed among these distances:
143 54 0.13
145 255 0.63
147 93 0.23
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (144 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGC
Found at i:49680664 original size:96 final size:95
Alignment explanation
Indices: 49680072--49680628 Score: 899
Period size: 96 Copynumber: 5.8 Consensus size: 95
49680062 CCCTTCGGGA
* *
49680072 CTTATCACATTTATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
49680137 ACTTTCACATTCATCACATCGGCCATTAGGC
66 AC-TTCACATTCATCACATCGGCCATTAGGC
* *
49680168 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
49680231 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACAC-TTCACATTCATCACATCGGCCATTAGGC
49680264 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAT
49680329 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACAC-TTCACATTCATCACATCGGCCATTAGGC
*
49680362 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
49680425 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACAC-TTCACATTCATCACATCGGCCATTAGGC
49680458 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
49680523 ACACTTTCACATTCATCACATCGGCCATTCGGC
64 ACAC-TTCACATTCATCACATCGGCCATTAGGC
*
49680556 CTTATCACATATATACACTTTCACATTCATCACACCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
49680621 A-TTCACAT
66 ACTTCACAT
49680629 CACAATTATC
Statistics
Matches: 441, Mismatches: 10, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
94 52 0.12
96 207 0.47
98 136 0.31
100 46 0.10
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTCACATTCATCACATCGGCCATTAGGC
Found at i:49695773 original size:27 final size:27
Alignment explanation
Indices: 49695731--49695786 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
49695721 TTTATTTTCT
* *
49695731 CACTAAATTTGTTAAGCCTAAAAGTTC
1 CACTAAATCTGGTAAGCCTAAAAGTTC
49695758 CACTAAATCTGGTAAGCCTAAAAGTTC
1 CACTAAATCTGGTAAGCCTAAAAGTTC
49695785 CA
1 CA
49695787 TTAGTTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (27 bp):
CACTAAATCTGGTAAGCCTAAAAGTTC
Done.