Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 158 of 295
Found at i:49697506 original size:40 final size:39
Alignment explanation
Indices: 49697408--49697630 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
49697398 TCCTCGTTCA
* * * ** * *
49697408 AATGCCTTCGAGACATAGCCCGGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
49697447 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
49697486 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
49697526 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
49697566 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
49697607 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
49697631 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.25
40 108 0.70
41 8 0.05
42 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:49697564 original size:80 final size:79
Alignment explanation
Indices: 49697406--49697630 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
49697396 GCTCCTCGTT
* * * ** * *
49697406 CAAATGCCTTCGAGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
49697471 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
49697485 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
49697550 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
49697565 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
49697628 GGA
63 GGA
49697631 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 40 0.33
80 77 0.63
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:49697630 original size:120 final size:119
Alignment explanation
Indices: 49697408--49697630 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 119
49697398 TCCTCGTTCA
* * *
49697408 AATGCCTTCGAGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGAGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
49697473 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * * *
49697527 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGAGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
49697591 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
49697631 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGAGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:49705003 original size:40 final size:39
Alignment explanation
Indices: 49704905--49705127 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
49704895 TCCTCGTTCA
* * ** * *
49704905 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
49704944 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
49704983 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
49705023 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
49705063 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
49705104 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
49705128 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 108 0.69
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:49705061 original size:80 final size:79
Alignment explanation
Indices: 49704903--49705127 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
49704893 GCTCCTCGTT
* * ** * *
49704903 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
49704968 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
49704982 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
49705047 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
49705062 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
49705125 GGA
63 GGA
49705128 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 41 0.33
80 77 0.62
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:49705127 original size:120 final size:119
Alignment explanation
Indices: 49704905--49705127 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 119
49704895 TCCTCGTTCA
* * *
49704905 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
49704970 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
49705024 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
49705088 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
49705128 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 38 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:49715355 original size:42 final size:42
Alignment explanation
Indices: 49715250--49715414 Score: 163
Period size: 43 Copynumber: 3.9 Consensus size: 42
49715240 ATATGTGTTA
* *
49715250 TCGTGTAAGACCACGTCTAGGATGTGGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGTCTGGGATGTTGGCATCGTA-TT-TGATT
49715293 TACGTGTAAGACCACGTCTGGGATGTTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGGGATGTTGGCATCGTATTTGATT
***
49715336 TCGTGTAAGACCTTATCTGGGATAG-TGGCATCGATATTTGATT
1 TCGTGTAAGACCACGTCTGGGAT-GTTGGCATCG-TATTTGATT
* * * * * * *
49715379 ACATGTAAAACCATGTCTGAGACGTTGGCATTGTAT
1 TCGTGTAAGACCACGTCTGGGATGTTGGCATCGTAT
49715415 GACCTTTCCG
Statistics
Matches: 104, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
42 31 0.30
43 40 0.38
44 32 0.31
45 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGATGTTGGCATCGTATTTGATT
Found at i:49717092 original size:26 final size:26
Alignment explanation
Indices: 49717061--49717113 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
49717051 AAAATTTGAG
* *
49717061 AAAGAAAAGAAATGGATAAAAGAGAA
1 AAAGAAAAGAAAGGGAGAAAAGAGAA
*
49717087 AAAGAAAATAAAGGGAGAAAAGAGAA
1 AAAGAAAAGAAAGGGAGAAAAGAGAA
49717113 A
1 A
49717114 GAAACGCACG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.70, C:0.00, G:0.25, T:0.06
Consensus pattern (26 bp):
AAAGAAAAGAAAGGGAGAAAAGAGAA
Found at i:49717097 original size:18 final size:20
Alignment explanation
Indices: 49717076--49717113 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
49717066 AAAGAAATGG
49717076 ATAAA-AGAGAAAA-AGAAA
1 ATAAAGAGAGAAAAGAGAAA
*
49717094 ATAAAGGGAGAAAAGAGAAA
1 ATAAAGAGAGAAAAGAGAAA
49717114 GAAACGCACG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 7 0.41
20 5 0.29
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.05
Consensus pattern (20 bp):
ATAAAGAGAGAAAAGAGAAA
Found at i:49717263 original size:89 final size:89
Alignment explanation
Indices: 49717112--49717291 Score: 324
Period size: 89 Copynumber: 2.0 Consensus size: 89
49717102 AGAAAAGAGA
*
49717112 AAGAAACGCACGGCCAAGGGTTTCGAATTTTTTAAACTTTAACCGGTTAGTCAATTTAGTCCATT
1 AAGAAACGCACGGCCAAGGGTTTCAAATTTTTTAAACTTTAACCGGTTAGTCAATTTAGTCCATT
* *
49717177 TTCTTGTAATTTCTACGTTTTTGG
66 TGCTTGTAATTTATACGTTTTTGG
*
49717201 AAGAAACGCACGGCCAAGGGTTTCAAATTTTTTAAACTTTAATCGGTTAGTCAATTTAGTCCATT
1 AAGAAACGCACGGCCAAGGGTTTCAAATTTTTTAAACTTTAACCGGTTAGTCAATTTAGTCCATT
49717266 TGCTTGTAATTTATACGTTTTTGG
66 TGCTTGTAATTTATACGTTTTTGG
49717290 AA
1 AA
49717292 TCCCAGTACT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (89 bp):
AAGAAACGCACGGCCAAGGGTTTCAAATTTTTTAAACTTTAACCGGTTAGTCAATTTAGTCCATT
TGCTTGTAATTTATACGTTTTTGG
Found at i:49723611 original size:39 final size:39
Alignment explanation
Indices: 49723407--49723629 Score: 189
Period size: 40 Copynumber: 5.6 Consensus size: 39
49723397 TTGAATGCTG
* * * * * *
49723407 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
49723447 TCCGGACTAAGAT-CCGAAGGCTTTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGC-ATTGTGCGAGTTACTAAA
* * *
49723486 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
49723527 TCCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
49723567 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
49723606 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
49723630 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 39 0.25
40 103 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:49723649 original size:79 final size:80
Alignment explanation
Indices: 49723487--49723664 Score: 189
Period size: 79 Copynumber: 2.2 Consensus size: 80
49723477 AGATACAAAT
* * * * *
49723487 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCTGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
49723552 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * * *
49723567 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
49723631 GAACGAGGAGCTATA
66 GAACGAGGAGCTAAA
*
49723646 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
49723665 TACGTGATTT
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 48 0.60
80 18 0.22
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAAA
Found at i:49726358 original size:5 final size:5
Alignment explanation
Indices: 49726343--49726374 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
49726333 AAGATGGAAC
49726343 AAAATG AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAA-G AAAAG AAAAG AAAAG AAAAG AAAAG A
49726375 TGACATCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:49736398 original size:49 final size:49
Alignment explanation
Indices: 49736246--49736513 Score: 190
Period size: 49 Copynumber: 5.6 Consensus size: 49
49736236 GGGATAAAAT
* * ** * *
49736246 GCTGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGC--ACATCAAA
1 GCTGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCATACATCGAG
49736294 G-TCGATGCCATGTCCCAGACAGGT-TTGACACTGACTTTCATACATCGAG
1 GCT-GATGCCATGTCCCAGACAGGTCTT-ACACTGACTTTCATACATCGAG
* *
49736343 GCTGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTT-AT-CTATCG-G
1 GCTGATGCCATGTCCCAGACAGGTCTTACACTGACT-TTCATAC-ATCGAG
* * * **
49736391 TGTTGATGCCATGTCCTAGACAGGTCTTACACTTACACTCA-ACA---A-
1 -GCTGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATACATCGAG
*
49736436 GCTGATGCCATGTCCCAGACAAGTCTTACACT-AGCTTGT-ATATC-TCGAG
1 GCTGATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATA-CATCGAG
* * *
49736485 GCTGATG-CATGCCCCAGGCATGTCTTACA
1 GCTGATGCCATGTCCCAGACAGGTCTTACA
49736514 TTAGCTCTCG
Statistics
Matches: 177, Mismatches: 23, Indels: 40
0.74 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 31 0.18
45 2 0.01
46 3 0.02
47 13 0.07
48 42 0.24
49 80 0.45
50 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (49 bp):
GCTGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATACATCGAG
Found at i:49739442 original size:38 final size:38
Alignment explanation
Indices: 49739391--49739464 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
49739381 CCTGAAGTAA
49739391 CATAACTTATTGAGATTTATTTGTTATCACCATTTTTT
1 CATAACTTATTGAGATTTATTTGTTATCACCATTTTTT
*
49739429 CATAACTTATTGAGATTTGTTTGTTATCACCATTTT
1 CATAACTTATTGAGATTTATTTGTTATCACCATTTT
49739465 CAAGTACTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.51
Consensus pattern (38 bp):
CATAACTTATTGAGATTTATTTGTTATCACCATTTTTT
Found at i:49741844 original size:16 final size:16
Alignment explanation
Indices: 49741823--49741865 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
49741813 GTAGATCGGT
* **
49741823 AAAAGCCGAAATGTTG
1 AAAAGCCAAAATGCCG
49741839 AAAAGCCAAAATGCCG
1 AAAAGCCAAAATGCCG
49741855 AAAAGCCAAAA
1 AAAAGCCAAAA
49741866 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (16 bp):
AAAAGCCAAAATGCCG
Found at i:49742164 original size:29 final size:28
Alignment explanation
Indices: 49742077--49742164 Score: 140
Period size: 29 Copynumber: 3.1 Consensus size: 28
49742067 GTAAGCATGA
49742077 ATATAATGTGATTTGGGCCTAATGGGCC
1 ATATAATGTGATTTGGGCCTAATGGGCC
* *
49742105 ACATAAATGTGATTTGGGCCTAAAGGGCC
1 ATAT-AATGTGATTTGGGCCTAATGGGCC
49742134 ATATAATTGTGATTTGGGCCTAATGGGCC
1 ATATAA-TGTGATTTGGGCCTAATGGGCC
49742163 AT
1 AT
49742165 GTGAATATAA
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
28 5 0.09
29 49 0.91
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (28 bp):
ATATAATGTGATTTGGGCCTAATGGGCC
Found at i:49745583 original size:22 final size:22
Alignment explanation
Indices: 49745557--49745599 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
49745547 ATAAACTCCT
* *
49745557 TTACATTCAATTAATAAATGTA
1 TTACATCCAATCAATAAATGTA
49745579 TTACATCCAATCAATAAATGT
1 TTACATCCAATCAATAAATGT
49745600 GAATTAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (22 bp):
TTACATCCAATCAATAAATGTA
Found at i:49746175 original size:19 final size:20
Alignment explanation
Indices: 49746151--49746189 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
49746141 AACTAATTTA
*
49746151 TAGTTG-TTTATAGCCATTG
1 TAGTTGATTTAAAGCCATTG
49746170 TAGTTGATTTAAAGCCATTG
1 TAGTTGATTTAAAGCCATTG
49746190 GGAAACATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.44
Consensus pattern (20 bp):
TAGTTGATTTAAAGCCATTG
Found at i:49749019 original size:27 final size:27
Alignment explanation
Indices: 49748985--49749159 Score: 183
Period size: 27 Copynumber: 6.5 Consensus size: 27
49748975 AAATTGTACA
49748985 GCAC-AAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
49749011 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * **
49749038 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
*
49749065 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
* *
49749093 GCACTAAGTGTGCGATTTGATTACG-T
1 GCACTAAGTGTGCGATTTGACTATGTT
* * * *
49749119 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTT
*
49749146 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
49749160 GACTCAATAT
Statistics
Matches: 125, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
26 26 0.21
27 76 0.61
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:49749126 original size:81 final size:80
Alignment explanation
Indices: 49748985--49749138 Score: 229
Period size: 82 Copynumber: 1.9 Consensus size: 80
49748975 AAATTGTACA
* *
49748985 GCACAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTG
1 GCACAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTG
49749050 CGAATTGACCATGCG
66 CGAATTGACCATGCG
** *
49749065 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGCACTAAGTG
1 GCAC-AAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
*
49749129 TGCGAGTTGA
64 TGCGAATTGA
49749139 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 4 0.06
81 30 0.45
82 32 0.48
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (80 bp):
GCACAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:49749150 original size:81 final size:81
Alignment explanation
Indices: 49748981--49749159 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 81
49748971 GGATAAATTG
* *
49748981 TACAGCAC-AAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
49749045 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
49749061 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGCACTA
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTA
* **
49749125 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
49749142 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49749160 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
80 6 0.07
81 45 0.54
82 32 0.39
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49749588 original size:27 final size:27
Alignment explanation
Indices: 49749558--49749735 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49749548 ATATTGAGTC
* * * *
49749558 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
49749585 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49749612 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
49749640 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
49749667 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
49749694 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49749721 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49749736 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:49749697 original size:82 final size:81
Alignment explanation
Indices: 49749579--49749734 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49749569 TGCTATATAA
* *
49749579 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
49749644 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
49749661 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
49749725 CACTTAGTGC
65 CACTTAGTGC
49749735 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:49752613 original size:19 final size:20
Alignment explanation
Indices: 49752575--49752613 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
49752565 TAATGTTTCC
*
49752575 CAATGGCTTTAAATCAACTA
1 CAATGGCTATAAATCAACTA
49752595 CAATGGCTATAAA-CAACTA
1 CAATGGCTATAAATCAACTA
49752614 TAAATTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.26
Consensus pattern (20 bp):
CAATGGCTATAAATCAACTA
Found at i:49753189 original size:22 final size:22
Alignment explanation
Indices: 49753164--49753206 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
49753154 AACTTAATTC
* *
49753164 ACATTTATTGATTGGATGTAAT
1 ACATTTATTAATTGAATGTAAT
49753186 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
49753207 AGGAGTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.14, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:49756626 original size:57 final size:57
Alignment explanation
Indices: 49756565--49756683 Score: 141
Period size: 58 Copynumber: 2.1 Consensus size: 57
49756555 CACATACCTG
* *
49756565 TATATGCCCCACTAGACCC-AATTATATTCACATGGCCCATTAGGCCCAAATCACAAT
1 TATATGCCCCACTAGACCCAAATCACATTCACATGGCCCATTAGGCCCAAATCAC-AT
* ** * * **
49756622 TATATGGCCCTTTAGGCCCAAATCACATTTATGTGGCCCATTAGGCCCAAATCACAT
1 TATATGCCCCACTAGACCCAAATCACATTCACATGGCCCATTAGGCCCAAATCACAT
49756679 TATAT
1 TATAT
49756684 TCATGCTTAC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 22 0.42
58 30 0.58
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (57 bp):
TATATGCCCCACTAGACCCAAATCACATTCACATGGCCCATTAGGCCCAAATCACAT
Found at i:49756629 original size:29 final size:29
Alignment explanation
Indices: 49756596--49756683 Score: 142
Period size: 29 Copynumber: 3.1 Consensus size: 29
49756586 TTATATTCAC
49756596 ATGGCCCATTAGGCCCAAATCACAATTAT
1 ATGGCCCATTAGGCCCAAATCACAATTAT
* *
49756625 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACAATTAT
*
49756654 GTGGCCCATTAGGCCCAAATCAC-ATTAT
1 ATGGCCCATTAGGCCCAAATCACAATTAT
49756682 AT
1 AT
49756684 TCATGCTTAC
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 5 0.09
29 48 0.91
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACAATTAT
Found at i:49756916 original size:16 final size:16
Alignment explanation
Indices: 49756895--49756937 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
49756885 GTAGCCAAAC
**
49756895 TTTTGGCTTTTCGGCA
1 TTTTGGCTTTTCAACA
49756911 TTTTGGCTTTTCAACA
1 TTTTGGCTTTTCAACA
*
49756927 TTTCGGCTTTT
1 TTTTGGCTTTT
49756938 ACCGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.09, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTTGGCTTTTCAACA
Found at i:49759339 original size:38 final size:38
Alignment explanation
Indices: 49759292--49759365 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
49759282 CAAGTACTTG
49759292 AAAATGGTGATAACAAACAAATCTCAATAAGTTATGAA
1 AAAATGGTGATAACAAACAAATCTCAATAAGTTATGAA
*
49759330 AAAATGGTGATAACAAATAAATCTCAATAAGTTATG
1 AAAATGGTGATAACAAACAAATCTCAATAAGTTATG
49759366 TTACTTCAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.51, C:0.09, G:0.14, T:0.26
Consensus pattern (38 bp):
AAAATGGTGATAACAAACAAATCTCAATAAGTTATGAA
Found at i:49762389 original size:49 final size:49
Alignment explanation
Indices: 49762144--49762499 Score: 187
Period size: 49 Copynumber: 7.5 Consensus size: 49
49762134 TATGTATGCT
* * * *
49762144 AGTGTAAGACATGCCTGGGACAT-GCATCGAA-CAC-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-AACCTCGATGTATGAAAGCC
* * ** * * * * *
49762190 AGTTTAAGACATGTCTGGGACAT-GCATCGGCATTGA-G-ACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATGTATGAAAGCC
* * * * * *
49762236 AATGTAAGACATGCCTGGGGCAT-GCATCAGCCTCGA-GATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATG-TATGA-AAGCC
* * ** **
49762284 AGTGTAAGACTTGTCTGGGACATGGCATC-AGCT---TGT-TGAGTGTA
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATGTATGAAAGCC
*
49762328 AGTGTAAGACCTGTCTAGGACATGGCATCAACAC-CGATAG-AT-AAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAAC-CTCGAT-GTATGAA-AGCC
* * *
49762377 AGTGTAAGACCTGTCTGGGACACGGCATCAGCCTCGATGTATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATGTATGAAAGCC
* * * **
49762426 AGTGTCAA-ACCTGTCTGGGACATGGCATCGACTTTGATG--TGCTAGCC
1 AGTGT-AAGACCTGTCTGGGACATGGCATCAACCTCGATGTATGAAAGCC
49762473 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
49762500 GTCAGCATTT
Statistics
Matches: 240, Mismatches: 47, Indels: 44
0.73 0.14 0.13
Matches are distributed among these distances:
44 29 0.12
45 3 0.01
46 67 0.28
47 15 0.06
48 45 0.19
49 77 0.32
50 4 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATGTATGAAAGCC
Found at i:49762392 original size:93 final size:93
Alignment explanation
Indices: 49762284--49762505 Score: 234
Period size: 98 Copynumber: 2.3 Consensus size: 93
49762274 TATACAAGCT
* **
49762284 AGTGTAAGACTTGTCTGGGACATGGCATCAGCT-TGT-TGAGTGTAAGTGT-AAGACCTGTCTAG
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCTATGTATGAAAGTAAGTGTCAA-ACCTGTCTAG
49762346 GACATGGCATCAACACCGATAGATAAGAGCC
65 GACATGGCATCAACACCGAT-G-TAAGAGCC
* *
49762377 AGTGTAAGACCTGTCTGGGACACGGCATCAGCCTCGATGTATGAAAGTCAGTGTCAAACCTGTCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAG-CT--ATGTATGAAAGTAAGTGTCAAACCTGTCT
* * *** ***
49762442 GGGACATGGCATCGACTTTGATGTGCTAGCC
63 AGGACATGGCATCAACACCGATGTAAGAGCC
*
49762473 AGTGTAAGACCATGTCTGGGACATGGCGTCAGC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCAGC
49762506 ATTTTATCCC
Statistics
Matches: 107, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
93 29 0.27
94 2 0.02
96 17 0.16
97 22 0.21
98 35 0.33
99 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCTATGTATGAAAGTAAGTGTCAAACCTGTCTAGG
ACATGGCATCAACACCGATGTAAGAGCC
Found at i:49762496 original size:48 final size:48
Alignment explanation
Indices: 49762181--49762505 Score: 210
Period size: 49 Copynumber: 6.9 Consensus size: 48
49762171 CGAACACATT
* * * * * *
49762181 ATGAGAGCCAGTTTAAGACATGTCTGGGACAT-GCATCGGCATTGA-G
1 ATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATG
* * * * * * *
49762227 ACGAGAGCTAATGTAAGACATGCCTGGGGCAT-GCATCAGCCTCGA-G
1 ATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATG
* * * * *
49762273 ATATACAAGCTAGTGTAAGACTTGTCTGGGACATGGCATCAG-CTTGTTG
1 AT-GA-AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATG
* * *
49762322 AGTG-TA---AGTGTAAGACCTGTCTAGGACATGGCATCAACAC-CGATAG
1 A-TGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGC-CTCGAT-G
*
49762368 AT-AAGAGCCAGTGTAAGACCTGTCTGGGACACGGCATCAGCCTCGATG
1 ATGAA-AGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATG
* * *
49762416 TATGAAAGTCAGTGTCAA-ACCTGTCTGGGACATGGCATC-GACTTTGATG
1 -ATGAAAGCCAGTGT-AAGACCTGTCTGGGACATGGCATCAG-CCTCGATG
** *
49762465 -TGCTAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCAGC
1 ATGAAAGCCAGTGTAAGACC-TGTCTGGGACATGGCATCAGC
49762506 ATTTTATCCC
Statistics
Matches: 221, Mismatches: 37, Indels: 40
0.74 0.12 0.13
Matches are distributed among these distances:
44 28 0.13
45 3 0.01
46 44 0.20
47 15 0.07
48 47 0.21
49 79 0.36
50 5 0.02
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
ATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATG
Found at i:49778050 original size:26 final size:26
Alignment explanation
Indices: 49778021--49778098 Score: 63
Period size: 26 Copynumber: 3.0 Consensus size: 26
49778011 CGAGATGACC
49778021 CATGTAAGACCATGTCTGGGACATGG
1 CATGTAAGACCATGTCTGGGACATGG
* ** * **
49778047 CATG--GGCACCATCAC-GAGAACATCC
1 CATGTAAG-ACCATGTCTG-GGACATGG
49778072 CATGTAAGACCATGTCTGGGACATGG
1 CATGTAAGACCATGTCTGGGACATGG
49778098 C
1 C
49778099 TTTGGCATGT
Statistics
Matches: 35, Mismatches: 12, Indels: 10
0.61 0.21 0.18
Matches are distributed among these distances:
24 2 0.06
25 15 0.43
26 16 0.46
27 2 0.06
ACGTcount: A:0.28, C:0.26, G:0.27, T:0.19
Consensus pattern (26 bp):
CATGTAAGACCATGTCTGGGACATGG
Found at i:49778095 original size:51 final size:51
Alignment explanation
Indices: 49777968--49778098 Score: 203
Period size: 50 Copynumber: 2.6 Consensus size: 51
49777958 GATCATGAGG
* * **
49777968 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAGATGA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGACACGAGAACA
49778019 -CCCATGTAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACGAGAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-CACGAGAACA
49778069 TCCCATGTAAGACCATGTCTGGGACATGGC
1 TCCCATGTAAGACCATGTCTGGGACATGGC
49778099 TTTGGCATGT
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
49 1 0.01
50 44 0.59
51 29 0.39
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.18
Consensus pattern (51 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGACACGAGAACA
Found at i:49786580 original size:17 final size:17
Alignment explanation
Indices: 49786554--49786589 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
49786544 TCAATCACAC
*
49786554 AAAAATGAAAAAAAAAG
1 AAAAAAGAAAAAAAAAG
*
49786571 AAAAAAGAAAAAAGAAG
1 AAAAAAGAAAAAAAAAG
49786588 AA
1 AA
49786590 TAAGATAGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (17 bp):
AAAAAAGAAAAAAAAAG
Found at i:49796905 original size:21 final size:21
Alignment explanation
Indices: 49796867--49796906 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
49796857 ATTACTCCAA
*
49796867 GGAAGCCGATTGATTCATCTC
1 GGAAGCCGATTCATTCATCTC
49796888 GGAAGCCGGATTCA-TCATC
1 GGAAGCC-GATTCATTCATC
49796907 AAGACTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (21 bp):
GGAAGCCGATTCATTCATCTC
Found at i:49806047 original size:47 final size:46
Alignment explanation
Indices: 49805895--49806068 Score: 153
Period size: 47 Copynumber: 3.7 Consensus size: 46
49805885 TGTAACCCGC
* * ** *
49805895 CCATAAGTGAACTC-GAACTCAACTCAATGAGCTC-GGGTGTTCGCAT
1 CCATAAGTGAACTCAG-ACTCAACTCAACGAGTTCAGCAT-TTCACAT
*
49805941 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC--A-G-C-ATTTCACAT
* * *
49805991 -C-TTA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTTCACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAG-CATTTCACAT
49806035 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC
49806069 GGATGTTCAA
Statistics
Matches: 103, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
43 3 0.03
44 6 0.06
45 2 0.02
46 32 0.31
47 51 0.50
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGCATTTCACAT
Found at i:49814719 original size:39 final size:39
Alignment explanation
Indices: 49814666--49814793 Score: 175
Period size: 39 Copynumber: 3.3 Consensus size: 39
49814656 TATGAGATTG
* *
49814666 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCCGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * *
49814705 AAAATATTCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
49814744 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
49814783 AAAATATCCGG
1 AAAATATCCGG
49814794 GTTAAAGACC
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:49814807 original size:78 final size:76
Alignment explanation
Indices: 49814665--49814819 Score: 186
Period size: 78 Copynumber: 2.0 Consensus size: 76
49814655 GTATGAGATT
* * * *
49814665 GAAAATATCCAGACATGAGGTCCGCAGGCTATATGCCGGAAAAATATTCGGACATGAGATCCGCA
1 GAAAATATCCAGACATGAGGTCCGCAGGCTACATGCCGGAAAAATATCCGGACATAAGACCCGCA
49814730 GGCTATATGCTA
66 GGCT-TATGCTA
* * * * **
49814742 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGACCCG
1 GAAA-ATATCCAGACATGAGGTCCGCAGGCTACATGCCGGAAAAATATCCGGACAT-AAGACCCG
49814806 CAGGCTTATGCTA
64 CAGGCTTATGCTA
49814819 G
1 G
49814820 TAATGTATTC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
77 13 0.20
78 53 0.80
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (76 bp):
GAAAATATCCAGACATGAGGTCCGCAGGCTACATGCCGGAAAAATATCCGGACATAAGACCCGCA
GGCTTATGCTA
Found at i:49822622 original size:39 final size:39
Alignment explanation
Indices: 49822569--49822696 Score: 184
Period size: 39 Copynumber: 3.3 Consensus size: 39
49822559 TATGAGATTG
**
49822569 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCTGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
49822608 AAAATATCTGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCTGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
49822647 AATATATCTGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCTGGACATGAGGTCCGCAGGCTATATGCTGGA
49822686 AAAATATCTGG
1 AAAATATCTGG
49822697 GTTAAAGACC
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (39 bp):
AAAATATCTGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:49825962 original size:15 final size:16
Alignment explanation
Indices: 49825942--49825974 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
49825932 AAATAATTTA
*
49825942 TTTCTCTTA-TTTTCT
1 TTTCTCTCACTTTTCT
49825957 TTTCTCTCACTTTTCT
1 TTTCTCTCACTTTTCT
49825973 TT
1 TT
49825975 CCTACCAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTCTCTCACTTTTCT
Found at i:49826412 original size:21 final size:20
Alignment explanation
Indices: 49826386--49826428 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
49826376 TTAAATTAGA
49826386 ATAAAA-ATGATAAGTTTTTTT
1 ATAAAATAT-ATAA-TTTTTTT
*
49826407 ATAAAATATTTAATTTTTTT
1 ATAAAATATATAATTTTTTT
49826427 AT
1 AT
49826429 TTTTTATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 9 0.45
21 9 0.45
22 2 0.10
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (20 bp):
ATAAAATATATAATTTTTTT
Found at i:49826564 original size:8 final size:8
Alignment explanation
Indices: 49826551--49826580 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
49826541 AAAAAATATT
49826551 TTTTATAA
1 TTTTATAA
49826559 TTTTATAA
1 TTTTATAA
49826567 TTTTTATAA
1 -TTTTATAA
49826576 TTTTA
1 TTTTA
49826581 ATACAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTTATAA
Found at i:49826571 original size:9 final size:9
Alignment explanation
Indices: 49826550--49826579 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
49826540 TAAAAAATAT
49826550 TTTTTATAA
1 TTTTTATAA
49826559 -TTTTATAA
1 TTTTTATAA
49826567 TTTTTATAA
1 TTTTTATAA
49826576 TTTT
1 TTTT
49826580 AATACAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (9 bp):
TTTTTATAA
Found at i:49826720 original size:29 final size:31
Alignment explanation
Indices: 49826660--49826731 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 31
49826650 CTTATGTTTA
*
49826660 TATAATTTTTTAAATAATGTTTACAACTTTT
1 TATAATTTTTTAAATAATGTTTACAAATTTT
* *
49826691 TATAA-TTTTT-AATAATTTTTAAAATATTTT
1 TATAATTTTTTAAATAATGTTTACAA-ATTTT
*
49826721 TAT-GTTTTTTA
1 TATAATTTTTTA
49826732 TGCTTTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
29 12 0.35
30 17 0.50
31 5 0.15
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (31 bp):
TATAATTTTTTAAATAATGTTTACAAATTTT
Found at i:49826772 original size:28 final size:28
Alignment explanation
Indices: 49826716--49826772 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
49826706 TTTTTAAAAT
* *
49826716 ATTTTTATGTTTTTTATGCTTTTTTTCA
1 ATTTTTATGTTTTTTATGATTTTTCTCA
49826744 ATTTTTAT-TTTTTTAAT-ATTTTTACTCA
1 ATTTTTATGTTTTTT-ATGATTTTT-CTCA
49826772 A
1 A
49826773 AATAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 11 0.44
28 14 0.56
ACGTcount: A:0.21, C:0.07, G:0.04, T:0.68
Consensus pattern (28 bp):
ATTTTTATGTTTTTTATGATTTTTCTCA
Found at i:49826974 original size:22 final size:21
Alignment explanation
Indices: 49826947--49826987 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
49826937 ACTTAATAGG
*
49826947 TTTTTTATTTATTTATAAGCTT
1 TTTTTTATATATTT-TAAGCTT
49826969 TTTTTTATATATTTTAAGC
1 TTTTTTATATATTTTAAGC
49826988 CTAACAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (21 bp):
TTTTTTATATATTTTAAGCTT
Found at i:49827100 original size:15 final size:16
Alignment explanation
Indices: 49827079--49827118 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
49827069 AATCCCTTCA
49827079 AAAATTATA-AAAAAT
1 AAAATTATATAAAAAT
*
49827094 TAAATTA-ATAAAAAT
1 AAAATTATATAAAAAT
49827109 AAAATTATAT
1 AAAATTATAT
49827119 TTTAGCTCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 1 0.05
15 18 0.86
16 2 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATTATATAAAAAT
Found at i:49831205 original size:44 final size:45
Alignment explanation
Indices: 49831118--49831208 Score: 175
Period size: 44 Copynumber: 2.0 Consensus size: 45
49831108 GCTAATACTC
49831118 AATTTAATAATCTGGAGTTGGCCTTTTTCTAGGTTGAAGAAGGGG
1 AATTTAATAATCTGGAGTTGGCCTTTTTCTAGGTTGAAGAAGGGG
49831163 AATTTAATAATCTGGAGTTGGCC-TTTTCTAGGTTGAAGAAGGGG
1 AATTTAATAATCTGGAGTTGGCCTTTTTCTAGGTTGAAGAAGGGG
49831207 AA
1 AA
49831209 GATGGAGAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 23 0.50
45 23 0.50
ACGTcount: A:0.29, C:0.09, G:0.29, T:0.34
Consensus pattern (45 bp):
AATTTAATAATCTGGAGTTGGCCTTTTTCTAGGTTGAAGAAGGGG
Found at i:49831300 original size:24 final size:24
Alignment explanation
Indices: 49831255--49831307 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
49831245 TTTAAAATAA
*
49831255 ATTTAATTTAATATAATTATTTTT
1 ATTTAATTTAATATAATAATTTTT
49831279 ATTTAATATTAATATAA-AATTTTT
1 ATTTAAT-TTAATATAATAATTTTT
49831303 ATTTA
1 ATTTA
49831308 TTTTTTACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 18 0.67
25 9 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
ATTTAATTTAATATAATAATTTTT
Found at i:49835053 original size:29 final size:29
Alignment explanation
Indices: 49835011--49835069 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
49835001 TTCCCATTTG
49835011 TTTCTCTTGAAAATAGACTCATTCAGGAT
1 TTTCTCTTGAAAATAGACTCATTCAGGAT
49835040 TTTCTCTTGAAAATAGACTCATTCAGGAT
1 TTTCTCTTGAAAATAGACTCATTCAGGAT
49835069 T
1 T
49835070 CTAAACATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (29 bp):
TTTCTCTTGAAAATAGACTCATTCAGGAT
Found at i:49837501 original size:31 final size:31
Alignment explanation
Indices: 49837466--49837533 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
49837456 TTAACAACCC
**
49837466 AGTGACTTAAAT-AAAAACTTTTGAATAATTT
1 AGTGACTTAAATGAAAAA-TTTCAAATAATTT
*
49837497 AGTGACTTAAATGAAAAATTTCAAATAGTTT
1 AGTGACTTAAATGAAAAATTTCAAATAATTT
49837528 AGTGAC
1 AGTGAC
49837534 CAACTTGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 28 0.85
32 5 0.15
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.35
Consensus pattern (31 bp):
AGTGACTTAAATGAAAAATTTCAAATAATTT
Found at i:49841420 original size:5 final size:5
Alignment explanation
Indices: 49841396--49841439 Score: 63
Period size: 5 Copynumber: 8.8 Consensus size: 5
49841386 GATGTGTAAA
*
49841396 ATAAT A-AAT ATAATT ATAAT ATAAT ATAAT ATAAT ATGAT ATAA
1 ATAAT ATAAT ATAA-T ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
49841440 GCAAATAATG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 4 0.11
5 26 0.74
6 5 0.14
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:49842338 original size:109 final size:109
Alignment explanation
Indices: 49842147--49842346 Score: 357
Period size: 109 Copynumber: 1.8 Consensus size: 109
49842137 GGATTTATTT
49842147 TTATCTATGATAATTATATTTTATTGATATAAAACAATTGCAATTCCATTTAATTTGATCATAAA
1 TTATCTATGATAATTATATTTTATTGATATAAAACAATTGCAATTCCATTTAATTTGATCATAAA
*
49842212 TACTTTTTGGATGTCTTATAATATATATTTGTACGTCAACTTTA
66 TACTTTTTAGATGTCTTATAATATATATTTGTACGTCAACTTTA
* *
49842256 TTATCTAT-ATTAATTATATTTTATTGATATAAAACAATTGCAGTTTCATTTAATTTGATCATAA
1 TTATCTATGA-TAATTATATTTTATTGATATAAAACAATTGCAATTCCATTTAATTTGATCATAA
49842320 ATACTTTTTAGATGTCTTATAATATAT
65 ATACTTTTTAGATGTCTTATAATATAT
49842347 GTTCTTTGCT
Statistics
Matches: 87, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
108 1 0.01
109 86 0.99
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.48
Consensus pattern (109 bp):
TTATCTATGATAATTATATTTTATTGATATAAAACAATTGCAATTCCATTTAATTTGATCATAAA
TACTTTTTAGATGTCTTATAATATATATTTGTACGTCAACTTTA
Found at i:49856242 original size:21 final size:20
Alignment explanation
Indices: 49856214--49856252 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
49856204 CAAAACTTGT
49856214 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
49856234 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
49856253 CAAAATACGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:49859550 original size:34 final size:34
Alignment explanation
Indices: 49859503--49859573 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
49859493 TTAGGCCCTC
*
49859503 TTTCAGCAGCAGTAACAGTCTGGGCCTGAGCCCA
1 TTTCAGCAGCAGTAACAGTCTGGGCCTCAGCCCA
* * * *
49859537 TTTCAGTATCAGTAGCAGTTTGGGCCTCAGCCCA
1 TTTCAGCAGCAGTAACAGTCTGGGCCTCAGCCCA
49859571 TTT
1 TTT
49859574 TAGAATAGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (34 bp):
TTTCAGCAGCAGTAACAGTCTGGGCCTCAGCCCA
Found at i:49863534 original size:39 final size:39
Alignment explanation
Indices: 49863490--49863754 Score: 467
Period size: 39 Copynumber: 6.8 Consensus size: 39
49863480 TATCAGGACA
*
49863490 AAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
49863529 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
49863568 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
49863607 AAGCCTGTGGGACTTTAGTCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
49863646 AAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
49863685 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
49863724 AAGCCTGCGGGACTTTAGCCCGGATACATTT
1 AAGCCTGCGGGACTTTAGCCCGGATACATTT
49863755 TCAGTGTCTT
Statistics
Matches: 215, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 215 1.00
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:49874445 original size:21 final size:21
Alignment explanation
Indices: 49874421--49874489 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
49874411 CTATGCGACC
49874421 TAGCTACATCATAATGTCTCG
1 TAGCTACATCATAATGTCTCG
* * *
49874442 TAGCT-C-TC-TAGTGCACATCACC
1 TAGCTACATCATAATG----TCTCG
49874464 TAGCTACATCATAATGTCTCG
1 TAGCTACATCATAATGTCTCG
49874485 TAGCT
1 TAGCT
49874490 CTCTTGTACA
Statistics
Matches: 35, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
18 4 0.11
19 2 0.06
20 1 0.03
21 13 0.37
22 8 0.23
23 1 0.03
24 2 0.06
25 4 0.11
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (21 bp):
TAGCTACATCATAATGTCTCG
Found at i:49874479 original size:43 final size:43
Alignment explanation
Indices: 49874418--49874502 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
49874408 CACCTATGCG
*
49874418 ACCTAGCTACATCATAATGTCTCGTAGCTCTCTAGTGCACATC
1 ACCTAGCTACATCATAATGTCTCGTAGCTCTCTAGTACACATC
*
49874461 ACCTAGCTACATCATAATGTCTCGTAGCTCTCTTGTACACAT
1 ACCTAGCTACATCATAATGTCTCGTAGCTCTCTAGTACACAT
49874503 GATGTGCACT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (43 bp):
ACCTAGCTACATCATAATGTCTCGTAGCTCTCTAGTACACATC
Found at i:49875040 original size:30 final size:30
Alignment explanation
Indices: 49875006--49875066 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
49874996 TCCTTACCTC
49875006 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
49875036 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
49875066 A
1 A
49875067 GGCTAGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:49886172 original size:21 final size:20
Alignment explanation
Indices: 49886144--49886182 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
49886134 CAAAACTTGT
49886144 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
49886164 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
49886183 CAAAATGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:49900792 original size:29 final size:28
Alignment explanation
Indices: 49900740--49900811 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
49900730 CTTATGGTCT
*
49900740 ACTAGGCCCAATCTCATTCATATGGCCC
1 ACTAGGCCCAATCACATTCATATGGCCC
*
49900768 ATTAGGCCCAAATCACA-TCTATATGGCCC
1 ACTAGGCCC-AATCACATTC-ATATGGCCC
*
49900797 ACTAGGCCTAATCAC
1 ACTAGGCCCAATCAC
49900812 TTTTACAGTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 16 0.42
29 22 0.58
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (28 bp):
ACTAGGCCCAATCACATTCATATGGCCC
Found at i:49905308 original size:50 final size:49
Alignment explanation
Indices: 49905249--49905526 Score: 301
Period size: 50 Copynumber: 5.6 Consensus size: 49
49905239 CATCAAAGTC
* *
49905249 GATGCCATGTCCTAGACATGGTCTTACATTGACTCTCACGTATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCAC-TATCGAGGCT
* * *
49905299 GATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATTGAAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCAC-TATCGAGGCT
* * * *
49905349 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATCTATCGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCA-CTATCGAGGCT
* * * * *
49905399 GATGCCATGTCCCAGACGTGGTCTTACACTGACACACACATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCAC-TATCGAGGCT
* * * * *
49905449 AATGCCATGTCCCTGACATGGTCTTACACAGGCTCTCA-TAAT-GTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACT-ATCGAGGCT
*
49905497 GACGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
49905527 ATCACACATA
Statistics
Matches: 190, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
48 31 0.16
49 3 0.02
50 155 0.82
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACTATCGAGGCT
Found at i:49905422 original size:100 final size:101
Alignment explanation
Indices: 49905244--49905527 Score: 348
Period size: 100 Copynumber: 2.9 Consensus size: 101
49905234 TCATACATCA
* * *
49905244 AAGTCGATGCCATGTCCTAGACATGGTCTTACATTGACTCTCA-CGTATCGAGGCTGATGCCATG
1 AAGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATC-TATCGATGCTGATGCCATG
* * *
49905308 TCCCAGACATGGTCTTACACTAG-CTCTCACATATTG
65 TCCCAGACATGGTCTTACACTAGACACACACATATCG
* *
49905344 AAGTTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATCTATCGATGCCGATGCCATGT
1 AAGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATCTATCGATGCTGATGCCATGT
* *
49905409 CCCAGACGTGGTCTTACACT-GACACACACATGTCG
66 CCCAGACATGGTCTTACACTAGACACACACATATCG
* * * * * *
49905444 AGGCCAATGCCATGTCCCT-GACATGGTCTTACACAGGCTCTCAT-AAT-G-TGGCTGACGCCAT
1 AAGTCGATGCCATGT-CCTAGACATGGTCTTACACTGGCTCTCATCTATCGAT-GCTGATGCCAT
49905505 GTCCCAGACATGGTCTTACACTA
64 GTCCCAGACATGGTCTTACACTA
49905528 TCACACATAT
Statistics
Matches: 160, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
97 1 0.01
98 31 0.19
99 3 0.02
100 121 0.76
101 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (101 bp):
AAGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATCTATCGATGCTGATGCCATGT
CCCAGACATGGTCTTACACTAGACACACACATATCG
Found at i:49918252 original size:40 final size:40
Alignment explanation
Indices: 49918206--49918408 Score: 234
Period size: 40 Copynumber: 5.1 Consensus size: 40
49918196 CGGAATTTAA
* *
49918206 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACGAATGCCTTCGGGACTTAGC
*
49918246 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* * *
49918286 CCGGACATAATAACTCGCACGAATGCCTTCGGGAATTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* * *
49918326 TCGGGTATAATAACTCGCAC-AATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACGAA-TGCCTTCGGGACTTAGC
* * * *
49918365 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGT
1 CCGGATA-TAGTAACTCGCACGAATGCCTTCGGGACTTAGC
49918405 CCGG
1 CCGG
49918409 TTATCATCCG
Statistics
Matches: 141, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 31 0.22
40 109 0.77
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
Found at i:49924641 original size:27 final size:27
Alignment explanation
Indices: 49924601--49924767 Score: 176
Period size: 27 Copynumber: 6.2 Consensus size: 27
49924591 AGGAAGCGTC
*
49924601 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
49924628 CTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
49924655 CTGGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
49924682 CTGATGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAAATATCTGA-T
* *
49924709 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
49924737 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
49924763 CTGGT
1 CTGGT
49924768 AGCCATGCTG
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.06
27 94 0.80
28 15 0.13
29 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:49924683 original size:54 final size:54
Alignment explanation
Indices: 49924601--49924767 Score: 246
Period size: 54 Copynumber: 3.1 Consensus size: 54
49924591 AGGAAGCGTC
* * * *
49924601 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
49924655 CTGGTGGCTCTGCCACGATTATCTGATCTGATGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
49924709 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
49924763 CTGGT
1 CTGGT
49924768 AGCCATGCTG
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 85 0.83
55 17 0.17
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:49924757 original size:81 final size:81
Alignment explanation
Indices: 49924605--49924765 Score: 220
Period size: 81 Copynumber: 2.0 Consensus size: 81
49924595 AGCGTCCTGG
* *
49924605 TGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATTTGTTCTGGTGGCTCTGCCA
1 TGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCTGCCA
49924670 CGATTATCTGATCTGA
66 CGATTATCTGATCTGA
* *
49924686 TGGCTCTGCCACATATATCT-ATTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACTCTG
1 TGGCTATGCCACAAATATCTGA-TCTGGTGGCTCTGCCAC-ATATATCTGT-TCTGGTGACTCTG
* *
49924749 TCAC-ATTATCTGTTCTG
63 CCACGATTATCTGATCTG
49924766 GTAGCCATGC
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
80 1 0.01
81 53 0.75
82 17 0.24
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (81 bp):
TGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCTGCCA
CGATTATCTGATCTGA
Found at i:49926131 original size:69 final size:70
Alignment explanation
Indices: 49925999--49926131 Score: 196
Period size: 69 Copynumber: 1.9 Consensus size: 70
49925989 TAGTTTATTA
* * * * *
49925999 CTAATTAATTTGCTGCTGTAATGCTGCAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGCAAATTATTGGCTGTCCAAATTAGAACAAAATCATGGTA
49926064 CTTAG
66 CTTAG
* *
49926069 CTAATTAATATGCTGTTGTAATACT-TAAATTATTGGCTGTCCAAATTAGAACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGCAAATTATTGGCTGTCCAAATTAGAACAAAATCATGGT
49926132 GTTATGTGCT
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
69 34 0.61
70 22 0.39
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGCAAATTATTGGCTGTCCAAATTAGAACAAAATCATGGTA
CTTAG
Found at i:49926942 original size:39 final size:39
Alignment explanation
Indices: 49926890--49927278 Score: 343
Period size: 39 Copynumber: 9.9 Consensus size: 39
49926880 ATTTGATGTA
49926890 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
*
49926929 TATCCAGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
* *
49926968 TATCAGGACTTAAGGTCCGCAAGCTTCTTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
* ** * * * *
49927007 TATCCGGGCTTAAAGACCCGTAGGCTAT-ATGCTGGAATTA
1 TATCCGGACTT-AAGGTCCGCAAGCT-TCGTGCTGGAATTG
* * * *
49927047 TATCCGGGCTTAAAGACC-CACAGACTTTGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCA-AG-CTTCGTGCTGGAATTG
* * *
49927087 TATTCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
* * *
49927126 TATCCGGGCTTAAAGACC-CACATGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCA-A-GCTTCGTGCTGGAATTG
* * * * * *
49927166 TATCTGGGCATAAAGACTCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTC-CGCAAGCTTCGTGCTGGAATTG
* * * * * * * * * *
49927206 TTTCCAGAATTAAGATCTGTAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
* * *
49927245 TATTCGGACTTAAGGTCCGCAGGCTTCGTACTGG
1 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGG
49927279 TACTATATCC
Statistics
Matches: 285, Mismatches: 55, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
38 3 0.01
39 162 0.57
40 114 0.40
41 4 0.01
42 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
Found at i:49927051 original size:40 final size:40
Alignment explanation
Indices: 49926906--49927206 Score: 295
Period size: 40 Copynumber: 7.6 Consensus size: 40
49926896 GACTTAAGGT
* * * * **
49926906 CCGCAAGCTTCGTGCTGGAATTGTATCCAGACTT-AAGGT
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * * **
49926945 CCGCAAGCTTCGTGCTGGAATTGTATCAGGACTT-AAGGT
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
*
49926984 CCGCAAGCTTCT-TGCTGGAATTGTATCCGGGCTTAAAGAC
1 CCGCAGGCTT-TGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * *
49927024 CCGTAGGCTATATGCTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * * **
49927064 CCACAGACTTTGTGCTGGAATTGTATTCGGACTT-AAGGT
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
49927103 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * * *
49927143 CCACATGCTTCGTGCTGGAATTGTATCTGGGCATAAAGAC
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* *
49927183 TCGCAGGCTTCGTGCTGGAATTGT
1 CCGCAGGCTTTGTGCTGGAATTGT
49927207 TTCCAGAATT
Statistics
Matches: 223, Mismatches: 35, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
39 101 0.45
40 122 0.55
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
Found at i:49927111 original size:79 final size:77
Alignment explanation
Indices: 49926911--49927314 Score: 310
Period size: 79 Copynumber: 5.1 Consensus size: 77
49926901 AAGGTCCGCA
* * * * *
49926911 AGCTTCGTGCTGGAATTGTATCCAGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCAGGA
1 AGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT-GTGCTGGAATTGTATCCGGG
* *
49926976 CTTAAGGTCCGCA-
65 CTTAAAGACC-CAC
* ** * * *
49926989 AGCTTCT-TGCTGGAATTGTATCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATTATATCCG
1 AGCTT-TGTGCTGGAATTGTATCCGGACTT-AAGGTCCGCAGGCT-TGTGCTGGAATTGTATCCG
49927053 GGCTTAAAGACCCAC
63 GGCTTAAAGACCCAC
*
49927068 AGACTTTGTGCTGGAATTGTATTCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCCGG
1 AG-CTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGC-TTGTGCTGGAATTGTATCCGG
49927133 GCTTAAAGACCCAC
64 GCTTAAAGACCCAC
* * * * * * * *
49927147 ATGCTTCGTGCTGGAATTGTATCTGGGCATAAAGACTCGCAGGCTTCGTGCTGGAATTGTTTCCA
1 A-GCTTTGTGCTGGAATTGTATCCGGACTTAAGGTC-CGCAGGCTT-GTGCTGGAATTGTATCCG
** * ***
49927212 GAATT-AAGATCTGT
63 GGCTTAAAGACCCAC
* * * * * * * * * *
49927226 AGGCTTCGTGCTGGTACTATATTCGGACTTAAGGTCCGCAGGCTTCGTACTGGTACTATATCCGA
1 A-GCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT-GTGCTGGAATTGTATCCGG
* *
49927291 GCTTAAAGTCCCAT
64 GCTTAAAGACCCAC
49927305 AGGCTTTGTG
1 A-GCTTTGTG
49927315 TTGGTGATTG
Statistics
Matches: 256, Mismatches: 59, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
78 51 0.20
79 153 0.60
80 52 0.20
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (77 bp):
AGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTGTGCTGGAATTGTATCCGGGC
TTAAAGACCCAC
Found at i:49927237 original size:158 final size:157
Alignment explanation
Indices: 49926912--49927303 Score: 437
Period size: 158 Copynumber: 2.5 Consensus size: 157
49926902 AGGTCCGCAA
* * * * *
49926912 GCTTCGTGCTGGAATTGTATCCAGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCAGGAC
1 GCTTCGTGCTGGAATTGTATTCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGC
* * * *
49926977 TTAAGGTCCGCAAGCTTCTTGCTGGAATTGTATCCGGGCTTAAAGACCCGTAGGCTATATGCTGG
66 TTAAAGTCC-CAAGCTTCGTGCTGGAATTGTATCCGGGCATAAAGACCCGCAGGCTATATGCTGG
* **
49927042 AATTATATCCGGGCTTAAAGACCCACAG
130 AATTATATCCAGAATTAAAGACCCACAG
* * *
49927070 ACTTTGTGCTGGAATTGTATTCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCCGGGC
1 GCTTCGTGCTGGAATTGTATTCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGC
* * * *
49927135 TTAAAGACCCACATGCTTCGTGCTGGAATTGTATCTGGGCATAAAGACTCGCAGGCT-TCGTGCT
66 TTAAAGTCCCA-A-GCTTCGTGCTGGAATTGTATCCGGGCATAAAGACCCGCAGGCTAT-ATGCT
* * * ***
49927199 GGAATTGTTTCCAGAATT-AAGATCTGTAG
128 GGAATTATATCCAGAATTAAAGACCCACAG
* * * * * * * *
49927228 GCTTCGTGCTGGTACTATATTCGGACTTAAGGTCCGCAGGCTTCGTACTGGTACTATATCCGAGC
1 GCTTCGTGCTGGAATTGTATTCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGC
49927293 TTAAAGTCCCA
66 TTAAAGTCCCA
49927304 TAGGCTTTGT
Statistics
Matches: 194, Mismatches: 37, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
157 2 0.01
158 137 0.71
159 55 0.28
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (157 bp):
GCTTCGTGCTGGAATTGTATTCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGC
TTAAAGTCCCAAGCTTCGTGCTGGAATTGTATCCGGGCATAAAGACCCGCAGGCTATATGCTGGA
ATTATATCCAGAATTAAAGACCCACAG
Found at i:49927257 original size:119 final size:117
Alignment explanation
Indices: 49926912--49927239 Score: 379
Period size: 119 Copynumber: 2.8 Consensus size: 117
49926902 AGGTCCGCAA
* * * * * *
49926912 GCTTCGTGCTGGAATTGTATCCAGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCAGGAC
1 GCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCGCAGGCTTCGTGCTGGAATTGTTTCA-GAC
* * **
49926977 TTAAGGTCCGCAAGCTTCTTGCTGGAATTGTATCCGGGCTTAAAGACCCGTAG
65 TTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAG
* * * * * *
49927030 GCTAT-ATGCTGGAATTATATCCGGGCTTAAAGACCCACAGACTTTGTGCTGGAATTGTATTCGG
1 GCT-TCGTGCTGGAATTGTATCCGGGCTTAAAGA-CCGCAGGCTTCGTGCTGGAATTGT-TTCAG
* *
49927094 ACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAT
63 ACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAG
* *
49927149 GCTTCGTGCTGGAATTGTATCTGGGCATAAAGACTCGCAGGCTTCGTGCTGGAATTGTTTCCAGA
1 GCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC-CGCAGGCTTCGTGCTGGAATTGTTT-CAGA
* * * *
49927214 ATTAAGATCTGTAGGCTTCGTGCTGG
64 CTTAAGGTCCGCAGGCTTCGTGCTGG
49927240 TACTATATTC
Statistics
Matches: 173, Mismatches: 31, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
118 29 0.17
119 142 0.82
120 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (117 bp):
GCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCGCAGGCTTCGTGCTGGAATTGTTTCAGACT
TAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAG
Found at i:49935433 original size:47 final size:47
Alignment explanation
Indices: 49935381--49935925 Score: 883
Period size: 47 Copynumber: 11.6 Consensus size: 47
49935371 GATAATTGTG
* *
49935381 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49935428 ATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49935475 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49935522 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49935569 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49935616 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49935663 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49935710 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49935759 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49935806 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
49935853 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49935900 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
49935926 TCCCGAAGGG
Statistics
Matches: 465, Mismatches: 31, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 420 0.90
49 45 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:49937956 original size:42 final size:42
Alignment explanation
Indices: 49937876--49937956 Score: 94
Period size: 42 Copynumber: 1.9 Consensus size: 42
49937866 GTGCAGGTTT
* *
49937876 CACACGGCCAAGACACACGCCTGTGTTCTAGGCTATGTGGCA
1 CACACGGCCAAGACACACGCCTGTGTTCTAGCCCATGTGGCA
* *
49937918 CACACGGCCGAGACACATG-CTCGTGTCTCT-GCCCATGTG
1 CACACGGCCAAGACACACGCCT-GTGT-TCTAGCCCATGTG
49937957 TCCAATTCTG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
41 2 0.06
42 28 0.85
43 3 0.09
ACGTcount: A:0.21, C:0.33, G:0.26, T:0.20
Consensus pattern (42 bp):
CACACGGCCAAGACACACGCCTGTGTTCTAGCCCATGTGGCA
Found at i:49939660 original size:20 final size:20
Alignment explanation
Indices: 49939631--49939675 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
49939621 AGCACATGTA
* *
49939631 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
49939651 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
49939671 TTCAT
1 TTCAT
49939676 TTTAGTCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:49944376 original size:40 final size:40
Alignment explanation
Indices: 49944276--49944377 Score: 98
Period size: 40 Copynumber: 2.5 Consensus size: 40
49944266 TCTTAGTATT
* * * * *
49944276 GCACACTTAGTGCCACATAAAGTCGAAGCTATTCCAATTC
1 GCACACTAAGTGCCAAATATAGCCGAAGCTATTCCAATAC
**** *
49944316 GCACACTAAGTGTTGTATATAGCCGAAGCTATTTCGAA-AC
1 GCACACTAAGTGCCAAATATAGCCGAAGCTA-TTCCAATAC
49944356 GCACACTAAGTGCCAAATATAG
1 GCACACTAAGTGCCAAATATAG
49944378 TAGATTTTTC
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
40 43 0.90
41 5 0.10
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (40 bp):
GCACACTAAGTGCCAAATATAGCCGAAGCTATTCCAATAC
Found at i:49949210 original size:47 final size:47
Alignment explanation
Indices: 49949141--49949457 Score: 202
Period size: 46 Copynumber: 6.7 Consensus size: 47
49949131 ATGTCGACGT
* *
49949141 CATGTCCTAGACATTGTCTTACACTGGCTCATATCTCAAGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGCCGATGC
* * * * * *
49949188 CATGTCCCAGACATGGTCTTACACTGACT-ATCGTCATTGAGGCTGACGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCAT-ATC--TCAAGCCGATGC
* * ** *
49949237 CATGTCCCAGGCATGGTCTTACACTAGTTCTCACATATCT-GTGTCGATGC
1 CATGTCCCAGACATGGTCTTACACT-G-GCT--CATATCTCAAGCCGATGC
* * * *
49949287 CATGTCCCGGACATGGTCTTACACTGACACAT-T-TCGTAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AAGCCGATGC
* * * * ** * * *
49949332 CATGTCCTAGACAT-GTCTTGCACTGCCTTACGTCTTGAGGCTGATG-
1 CATGTCCCAGACATGGTCTTACACTGGCTCATATC-TCAAGCCGATGC
* * * *
49949378 CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCAATGT
1 CATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAA-GCCGATGC
49949425 CATGTCCCAGACATGGTCTTACACTGGCTCATA
1 CATGTCCCAGACATGGTCTTACACTGGCTCATA
49949458 ATAACCCATA
Statistics
Matches: 206, Mismatches: 46, Indels: 35
0.72 0.16 0.12
Matches are distributed among these distances:
44 13 0.06
45 16 0.08
46 49 0.24
47 43 0.21
48 15 0.07
49 34 0.17
50 29 0.14
51 3 0.01
53 2 0.01
54 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGCCGATGC
Found at i:49951128 original size:37 final size:37
Alignment explanation
Indices: 49951058--49951154 Score: 106
Period size: 37 Copynumber: 2.6 Consensus size: 37
49951048 TACGTGCAAG
* * *
49951058 ACCATAGCTGGGCTATGGCATCGTAATGACATGTAAA
1 ACCATGGCTGGGCTATGGCATTGTAATCACATGTAAA
* * * *
49951095 ACCATGGCTGGGCTATGGCATTGTGATCCCATGTTAG
1 ACCATGGCTGGGCTATGGCATTGTAATCACATGTAAA
*
49951132 ACCATGTCTGGGAC-ATGGCATTG
1 ACCATGGCTGGG-CTATGGCATTG
49951155 GCATCAATAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
37 50 0.98
38 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (37 bp):
ACCATGGCTGGGCTATGGCATTGTAATCACATGTAAA
Found at i:49951344 original size:48 final size:48
Alignment explanation
Indices: 49951116--49951342 Score: 346
Period size: 48 Copynumber: 4.7 Consensus size: 48
49951106 GCTATGGCAT
* *
49951116 TGTGATCCCATGTTAGACCATGTCTGGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
*
49951164 TGTGATCCCATGTAAGACCATGTCTGGGACATAGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
*
49951212 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * *
49951260 TATGATCCCACGTAAGACCATGTCTGGGATATGGCGTTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** * *
49951308 TGTGATTTCATGTACGACCATGTTTGGGACATGGC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGC
49951343 GTCGATATGG
Statistics
Matches: 162, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 162 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:49952970 original size:40 final size:40
Alignment explanation
Indices: 49952906--49953379 Score: 779
Period size: 40 Copynumber: 11.8 Consensus size: 40
49952896 TTATTGCAGC
* *
49952906 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATATGTCAACT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA-T
*
49952947 T-GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAAT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
* * *
49952986 TCGCACAAACGCCGTCGGGTCTTAGCCCGGATATATCAGT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
* *
49953026 TCGCACAAATGCCTTTGGGTCTTATCCCGGATATATCAAT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
*
49953066 TCGCACAAATGCCTTCGGGTCTTATCCCGGATATATCAAT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
*
49953106 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAC
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
* *
49953146 TCGCACAAATGCCTTCAGGTCTTAGCCCGAATATATCAAT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
*
49953186 TCGCACAAATGCCTTCAGGTCTTAGCCCGGATATATCAAT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
* *
49953226 TCGCACAAATGCCTTTGGGTCTTATCCCGGATATATCAAT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
*
49953266 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
*
49953306 TCGCACAAATGCCTTCGGGTCTTAGCCTGGATATATCAAT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
49953346 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
49953380 CATTCAAATG
Statistics
Matches: 404, Mismatches: 28, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.00
40 401 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAT
Found at i:49959224 original size:40 final size:40
Alignment explanation
Indices: 49959179--49959643 Score: 752
Period size: 40 Copynumber: 11.6 Consensus size: 40
49959169 CAAGCTCAAT
* * * * *
49959179 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
49959219 TGCCTTCGGGTCTTAGCCCAGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
49959259 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
49959299 TGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
49959339 TGCCTCCGGGTCTTATCCCGGATATATCAATTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
49959379 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
49959419 TGCCTTCGGGTCCTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
49959459 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
49959499 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
49959539 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
49959579 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
49959619 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
49959644 CATTCAAATG
Statistics
Matches: 396, Mismatches: 27, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.01
40 393 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:49963074 original size:55 final size:53
Alignment explanation
Indices: 49962884--49963138 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
49962874 ACGCGGGTAC
* * * * *
49962884 CTTACCATTGCCATGTCTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* *
49962933 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
49962986 CTGACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * * *
49963041 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
*
49963094 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
49963139 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 20, Indels: 20
0.81 0.09 0.09
Matches are distributed among these distances:
49 36 0.21
52 2 0.01
53 47 0.27
54 14 0.08
55 72 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:49963075 original size:108 final size:110
Alignment explanation
Indices: 49962931--49963131 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
49962921 ATCCTTTTGA
* *
49962931 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTGACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTGACCAA
49962994 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
49963039 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTGACCAAT
49963104 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
49963132 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTGACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:49972589 original size:45 final size:45
Alignment explanation
Indices: 49972417--49972589 Score: 271
Period size: 45 Copynumber: 3.9 Consensus size: 45
49972407 CCGAATTCAT
* *
49972417 TCACCGGCATT-TCA-CCTGCTAGGCTC-GAGGCCAGAATAATATC
1 TCACCGGCATTAT-AGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
49972460 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
49972505 TCATCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
49972550 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
49972590 GTACTGTACA
Statistics
Matches: 120, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
43 12 0.10
44 13 0.11
45 95 0.79
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:49980979 original size:79 final size:81
Alignment explanation
Indices: 49980843--49981027 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
49980833 TTGAATGATG
* *
49980843 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
49980907 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
49980922 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
49980984 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
49981002 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49981028 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:49981041 original size:40 final size:40
Alignment explanation
Indices: 49980844--49981027 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
49980834 TGAATGATGT
* * * *
49980844 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
49980884 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
49980924 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
49980962 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
49981003 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
49981028 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:49981049 original size:79 final size:79
Alignment explanation
Indices: 49980896--49981060 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
49980886 GGACTAAGAT
* * **
49980896 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
49980961 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
49980975 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
49981038 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
49981054 CCGAAGG
1 CCGAAGG
49981061 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:49984239 original size:40 final size:40
Alignment explanation
Indices: 49984181--49984276 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
49984171 ACCTATCTCA
* *
49984181 AATCGCACACTAATTGCCATATATTA-TCGAAAATATGTCG
1 AATCGCACACTAAGTGCCATATA-TAGCCGAAAATATGTCG
**
49984221 AATCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCG
1 AATCGCACACTAAGTGCCATATATAGCCGAAAATATGTCG
*
49984261 TATCGCACACTAAGTG
1 AATCGCACACTAAGTG
49984277 TCACAAATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
39 2 0.04
40 48 0.96
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (40 bp):
AATCGCACACTAAGTGCCATATATAGCCGAAAATATGTCG
Found at i:49984382 original size:20 final size:20
Alignment explanation
Indices: 49984357--49984398 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
49984347 TTAAAGTATA
49984357 ATTATTACAATGCTTAATAC
1 ATTATTACAATGCTTAATAC
49984377 ATTATTACAATGCTTAATAC
1 ATTATTACAATGCTTAATAC
49984397 AT
1 AT
49984399 ACGAACTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.05, T:0.40
Consensus pattern (20 bp):
ATTATTACAATGCTTAATAC
Found at i:50003364 original size:46 final size:46
Alignment explanation
Indices: 50003195--50003369 Score: 244
Period size: 46 Copynumber: 3.8 Consensus size: 46
50003185 TGTAACCCGC
* * * *
50003195 CCATAAGCGAACTCAGACTCAACTCAAAGAACTCAGG-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
* *
50003241 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
50003287 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
50003333 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
50003370 TGCCCAAATA
Statistics
Matches: 116, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 115 0.99
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:50007387 original size:17 final size:17
Alignment explanation
Indices: 50007365--50007401 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
50007355 TTCAACATAT
50007365 AAATAAAGATAAAAA-TA
1 AAATAAA-ATAAAAAGTA
50007382 AAATAAAATAAAAAGTA
1 AAATAAAATAAAAAGTA
50007399 AAA
1 AAA
50007402 ATAATAGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (17 bp):
AAATAAAATAAAAAGTA
Found at i:50007402 original size:7 final size:6
Alignment explanation
Indices: 50007365--50007405 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
50007355 TTCAACATAT
*
50007365 AAATAA AGATAA AAAT-A AAAT-A AAATAA AAAGTAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA-TAA AAATAA
50007406 TAGGTGTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 10 0.32
6 15 0.48
7 6 0.19
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:50011649 original size:40 final size:40
Alignment explanation
Indices: 50011594--50011861 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
50011584 AGCATTTGAA
50011594 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
50011634 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
50011674 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
50011714 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
50011754 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
50011794 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
50011834 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
50011862 AGGTGTTTGC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:50017848 original size:40 final size:40
Alignment explanation
Indices: 50017793--50018060 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
50017783 AGCATTTGAA
50017793 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
50017833 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
50017873 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
50017913 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
50017953 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
50017993 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
50018033 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
50018061 AGGTGTTTGC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:50023614 original size:40 final size:40
Alignment explanation
Indices: 50023517--50023741 Score: 240
Period size: 40 Copynumber: 5.7 Consensus size: 40
50023507 TTGAATGCTG
* * * * *
50023517 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* ** * *
50023557 TCTGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50023597 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
50023637 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50023677 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50023716 TCCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
50023742 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 35 0.22
40 117 0.73
41 8 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50023720 original size:39 final size:40
Alignment explanation
Indices: 50023570--50023739 Score: 243
Period size: 40 Copynumber: 4.3 Consensus size: 40
50023560 GGACTAAGAT
* * *
50023570 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
*
50023610 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
50023650 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
50023690 CCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
50023729 CCGAAGGCATT
1 CCGAAGGCATT
50023740 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 35 0.29
40 85 0.71
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:50023759 original size:79 final size:80
Alignment explanation
Indices: 50023592--50023774 Score: 235
Period size: 79 Copynumber: 2.3 Consensus size: 80
50023582 GTGCGAGATA
* *
50023592 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
50023657 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
50023672 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
*
50023736 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
50023751 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
50023775 TACGTGATTT
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.53
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:50031602 original size:39 final size:40
Alignment explanation
Indices: 50031399--50031621 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
50031389 TTGAATGCTG
* * * * * *
50031399 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
50031439 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
50031479 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
50031519 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
50031559 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
50031598 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
50031622 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 36 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:50031641 original size:79 final size:80
Alignment explanation
Indices: 50031474--50031656 Score: 235
Period size: 79 Copynumber: 2.3 Consensus size: 80
50031464 GTGCGAGATA
* *
50031474 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
50031539 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
50031554 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
*
50031618 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
50031633 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
50031657 TACGTGATTT
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.53
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:50038113 original size:26 final size:25
Alignment explanation
Indices: 50038079--50038127 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
50038069 ATTATATAAC
* *
50038079 AATTCAAATGCTTATCAATTAATCA
1 AATTCAAATGATTAGCAATTAATCA
*
50038104 AATTACAAATTATTAGCAATTAAT
1 AATT-CAAATGATTAGCAATTAAT
50038128 ATAAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.47, C:0.12, G:0.04, T:0.37
Consensus pattern (25 bp):
AATTCAAATGATTAGCAATTAATCA
Found at i:50040833 original size:39 final size:40
Alignment explanation
Indices: 50040733--50040917 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
50040723 TCGAATGATG
* * * *
50040733 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
50040772 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
50040813 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
50040852 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
50040891 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50040918 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:50040939 original size:79 final size:79
Alignment explanation
Indices: 50040786--50040940 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
50040776 AGACTAAGAT
* **
50040786 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
50040851 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
50040865 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
50040928 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
50040941 ATTTCGAAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:50053825 original size:33 final size:33
Alignment explanation
Indices: 50053780--50053847 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
50053770 AGGACACTCC
50053780 CAGATCTAATATTTTGTGGACCCACATCAAAAA
1 CAGATCTAATATTTTGTGGACCCACATCAAAAA
* *
50053813 CAGATCTGATATTTTGTGGACCCACGTCAAAAA
1 CAGATCTAATATTTTGTGGACCCACATCAAAAA
50053846 CA
1 CA
50053848 TACTCCTGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (33 bp):
CAGATCTAATATTTTGTGGACCCACATCAAAAA
Found at i:50055954 original size:20 final size:20
Alignment explanation
Indices: 50055929--50055968 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50055919 CGGTCGTGTG
50055929 GGGGTCAACAAGCCCATGTA
1 GGGGTCAACAAGCCCATGTA
* *
50055949 GGGGTCAACACGCCCGTGTA
1 GGGGTCAACAAGCCCATGTA
50055969 AGAGGAGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.25, C:0.28, G:0.33, T:0.15
Consensus pattern (20 bp):
GGGGTCAACAAGCCCATGTA
Found at i:50056030 original size:21 final size:21
Alignment explanation
Indices: 50055973--50056024 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
50055963 CGTGTAAGAG
50055973 GAGGCACACGGTCGTGTGGCT
1 GAGGCACACGGTCGTGTGGCT
50055994 GAGGCACACGGTCGTGTGGCT
1 GAGGCACACGGTCGTGTGGCT
50056015 GAGGCACACG
1 GAGGCACACG
50056025 CCCGTGGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.17, C:0.25, G:0.42, T:0.15
Consensus pattern (21 bp):
GAGGCACACGGTCGTGTGGCT
Found at i:50060627 original size:16 final size:17
Alignment explanation
Indices: 50060600--50060634 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
50060590 TAGAATTAGG
*
50060600 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
50060617 TTGAG-AAATTAATTAA
1 TTGAGAAAATTAATTAA
50060633 TT
1 TT
50060635 TTATTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:50062338 original size:20 final size:20
Alignment explanation
Indices: 50062313--50062481 Score: 73
Period size: 20 Copynumber: 8.7 Consensus size: 20
50062303 AAGTGGTATC
50062313 CATTAGAAATTTTAATATTG
1 CATTAGAAATTTTAATATTG
* ** *
50062333 CATTAGAAATATTGGTA-TC
1 CATTAGAAATTTTAATATTG
* ***
50062352 CATTAAAAATTTTGGCATTG
1 CATTAGAAATTTTAATATTG
* * *
50062372 CATTAAAAATATTGATATTG
1 CATTAGAAATTTTAATATTG
* * * *
50062392 CTTTAGAGATTTTGATATTA
1 CATTAGAAATTTTAATATTG
* *
50062412 CGA-TAAAAATTTTAGTATT-
1 C-ATTAGAAATTTTAATATTG
*
50062431 AATTA-AAATTTTAAT-TTCG
1 CATTAGAAATTTTAATATT-G
* * *
50062450 TATTAGAAATATTAA-ATATC
1 CATTAGAAATTTTAATAT-TG
50062470 CATTA-AAATTTT
1 CATTAGAAATTTT
50062482 TGCAAGTTTA
Statistics
Matches: 113, Mismatches: 28, Indels: 17
0.72 0.18 0.11
Matches are distributed among these distances:
17 2 0.02
18 10 0.09
19 27 0.24
20 73 0.65
21 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (20 bp):
CATTAGAAATTTTAATATTG
Found at i:50062361 original size:19 final size:19
Alignment explanation
Indices: 50062277--50062385 Score: 67
Period size: 20 Copynumber: 5.6 Consensus size: 19
50062267 CAAGATGCTC
* **
50062277 TTAAAAATTTTGGTATCTG
1 TTAAAAATATTGGTATCCA
*
50062296 TTAGAAAA-AGTGGTATCCA
1 TTA-AAAATATTGGTATCCA
* * ** *
50062315 TTAGAAATTTTAATATTGCA
1 TTAAAAATATTGGTA-TCCA
*
50062335 TTAGAAATATTGGTATCCA
1 TTAAAAATATTGGTATCCA
* * *
50062354 TTAAAAATTTTGGCATTGCA
1 TTAAAAATATTGGTA-TCCA
50062374 TTAAAAATATTG
1 TTAAAAATATTG
50062386 ATATTGCTTT
Statistics
Matches: 67, Mismatches: 19, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
18 3 0.04
19 31 0.46
20 33 0.49
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (19 bp):
TTAAAAATATTGGTATCCA
Found at i:50062372 original size:39 final size:39
Alignment explanation
Indices: 50062277--50062385 Score: 132
Period size: 39 Copynumber: 2.8 Consensus size: 39
50062267 CAAGATGCTC
* *
50062277 TTAAAAATTTTGGTATCTG--TTAGAAAAAGTGGTATCCA
1 TTAAAAATTTTGGTAT-TGCATTAGAAATATTGGTATCCA
* **
50062315 TTAGAAATTTTAATATTGCATTAGAAATATTGGTATCCA
1 TTAAAAATTTTGGTATTGCATTAGAAATATTGGTATCCA
* *
50062354 TTAAAAATTTTGGCATTGCATTAAAAATATTG
1 TTAAAAATTTTGGTATTGCATTAGAAATATTG
50062386 ATATTGCTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
37 2 0.03
38 13 0.22
39 44 0.75
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (39 bp):
TTAAAAATTTTGGTATTGCATTAGAAATATTGGTATCCA
Found at i:50066939 original size:21 final size:21
Alignment explanation
Indices: 50066910--50066965 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
50066900 CGAACACGAC
* * *
50066910 AACAAAAGCTCATAGGAGCTG
1 AACAGAAGCTCAAAGAAGCTG
50066931 AACAGAAGCTCAAAGAAGCTG
1 AACAGAAGCTCAAAGAAGCTG
*
50066952 AGCAGAAGCTCAAA
1 AACAGAAGCTCAAA
50066966 AGAGTTTATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.46, C:0.20, G:0.23, T:0.11
Consensus pattern (21 bp):
AACAGAAGCTCAAAGAAGCTG
Found at i:50067536 original size:16 final size:18
Alignment explanation
Indices: 50067515--50067547 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
50067505 ATTAATCATT
50067515 TTTATC-AAATA-AATAA
1 TTTATCTAAATATAATAA
50067531 TTTATCTAAATATAATA
1 TTTATCTAAATATAATA
50067548 GGCCCTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTATCTAAATATAATAA
Found at i:50068904 original size:9 final size:9
Alignment explanation
Indices: 50068890--50068957 Score: 102
Period size: 9 Copynumber: 7.6 Consensus size: 9
50068880 ATAAGTATAA
50068890 AATTAACCG
1 AATTAACCG
50068899 AATTAACCG
1 AATTAACCG
*
50068908 AATTAATCG
1 AATTAACCG
50068917 AATTAACCG
1 AATTAACCG
50068926 AATT-ACCAG
1 AATTAACC-G
*
50068935 AATTAACCA
1 AATTAACCG
50068944 AATTAACCG
1 AATTAACCG
50068953 AATTA
1 AATTA
50068958 TTTGTATAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
8 3 0.06
9 47 0.89
10 3 0.06
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:50069058 original size:13 final size:13
Alignment explanation
Indices: 50069042--50069066 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50069032 AATTTTTATG
50069042 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
50069055 ATTGGGTTGGGT
1 ATTGGGTTGGGT
50069067 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:50069193 original size:18 final size:18
Alignment explanation
Indices: 50069170--50069204 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
50069160 TTTTATTAAT
*
50069170 TTTTTTTGGTTAACCGAA
1 TTTTTTCGGTTAACCGAA
50069188 TTTTTTCGGTTAACCGA
1 TTTTTTCGGTTAACCGA
50069205 TCGGTTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.14, G:0.17, T:0.49
Consensus pattern (18 bp):
TTTTTTCGGTTAACCGAA
Found at i:50070444 original size:8 final size:8
Alignment explanation
Indices: 50070410--50070451 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
50070400 GTGTGATATT
50070410 TTAAA-TA
1 TTAAATTA
* *
50070417 TTATATAA
1 TTAAATTA
50070425 TTAAATTA
1 TTAAATTA
50070433 -TAAATTA
1 TTAAATTA
50070440 TTAAATTA
1 TTAAATTA
50070448 TTAA
1 TTAA
50070452 TTTTAAACTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
7 11 0.38
8 18 0.62
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
TTAAATTA
Found at i:50070465 original size:14 final size:15
Alignment explanation
Indices: 50070410--50070467 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
50070400 GTGTGATATT
*
50070410 TTAAA-TATTATATAA
1 TTAAATTATTA-ATTA
*
50070425 TTAAATTATAAATTA
1 TTAAATTATTAATTA
50070440 TTAAATTATTAATT-
1 TTAAATTATTAATTA
50070454 TTAAACTT-TTAATT
1 TTAAA-TTATTAATT
50070468 GTGAAAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
14 11 0.29
15 23 0.61
16 4 0.11
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAAATTATTAATTA
Found at i:50075271 original size:22 final size:23
Alignment explanation
Indices: 50075246--50075304 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
50075236 TGATTAAGAT
*
50075246 AATAAAAAAATAAAATA-TGAAA
1 AATAAAAAAATAAAATATTCAAA
50075268 AATAAAATAAA-AAAATATTCAAA
1 AATAAAA-AAATAAAATATTCAAA
**
50075291 AATGCAAAAATAAA
1 AATAAAAAAATAAA
50075305 TTTAAGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 16 0.52
23 15 0.48
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (23 bp):
AATAAAAAAATAAAATATTCAAA
Done.