Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 160 of 295
Found at i:50325354 original size:22 final size:22
Alignment explanation
Indices: 50325326--50325371 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
50325316 TATAAGTTAT
50325326 GTAAGTTATGTGAGTTATGTAA
1 GTAAGTTATGTGAGTTATGTAA
50325348 GTAAGTTATGTGAGTTATGTAA
1 GTAAGTTATGTGAGTTATGTAA
50325370 GT
1 GT
50325372 TATGTAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.41
Consensus pattern (22 bp):
GTAAGTTATGTGAGTTATGTAA
Found at i:50325775 original size:29 final size:28
Alignment explanation
Indices: 50325732--50325859 Score: 123
Period size: 29 Copynumber: 4.3 Consensus size: 28
50325722 TCACATGGAA
*
50325732 AAAAAATTATTTTAATTAAATAATATTT
1 AAAAAATTATATTAATTAAATAATATTT
*
50325760 ATAAAAATTATATTAATTTAATAATATTT
1 A-AAAAATTATATTAATTAAATAATATTT
* * *
50325789 AAATAAATTA-ATCTAAATTATATTATTAATT
1 AAA-AAATTATAT-T-AATTA-AATAATATTT
*
50325820 AATCCAAATTATATTAATTAAATAATATTT
1 AA--AAAATTATATTAATTAAATAATATTT
50325850 AAATAAATTA
1 AAA-AAATTA
50325860 ATCCAAATTA
Statistics
Matches: 80, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
28 5 0.06
29 39 0.49
30 13 0.16
31 14 0.17
32 7 0.09
33 2 0.03
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (28 bp):
AAAAAATTATATTAATTAAATAATATTT
Found at i:50325821 original size:22 final size:23
Alignment explanation
Indices: 50325794--50325879 Score: 89
Period size: 22 Copynumber: 4.1 Consensus size: 23
50325784 TATTTAAATA
*
50325794 AATTAATCTAAATTATATT-ATT
1 AATTAATCCAAATTATATTAATT
50325816 AATTAATCCAAATTATATTAATT
1 AATTAATCCAAATTATATTAATT
* *
50325839 AAATAAT----ATT-TA--AATA
1 AATTAATCCAAATTATATTAATT
50325855 AATTAATCCAAATTATATTAATT
1 AATTAATCCAAATTATATTAATT
50325878 AA
1 AA
50325880 AATAAAATTG
Statistics
Matches: 51, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
16 9 0.18
18 2 0.04
19 3 0.06
20 3 0.06
21 2 0.04
22 18 0.35
23 14 0.27
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (23 bp):
AATTAATCCAAATTATATTAATT
Found at i:50325831 original size:61 final size:62
Alignment explanation
Indices: 50325764--50325879 Score: 207
Period size: 61 Copynumber: 1.9 Consensus size: 62
50325754 ATATTTATAA
* *
50325764 AAATTATATTAATTTAATAATATTTAAATAAATTAATCTAAATTATATT-ATTAATTAATCC
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAATTAATCC
50325825 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAA
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAA
50325880 AATAAAATTG
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
61 47 0.90
62 5 0.10
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (62 bp):
AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAATTAATCC
Found at i:50325836 original size:19 final size:19
Alignment explanation
Indices: 50325767--50325879 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
50325757 TTTATAAAAA
50325767 TTATATTAATTTAAT-AATAT
1 TTATATTAA-TTAATCAA-AT
* *
50325787 TTAAATAAATTAATCTAAAT
1 TTATATTAATTAATC-AAAT
50325807 TATATTATTAATTAATCCAAA-
1 T-TA-TATTAATTAAT-CAAAT
50325828 TTATATTAATTAAAT-AATAT
1 TTATATTAATT-AATCAA-AT
* *
50325848 TTAAATAAATTAATCCAAA-
1 TTATATTAATTAAT-CAAAT
50325867 TTATATTAATTAA
1 TTATATTAATTAA
50325880 AATAAAATTG
Statistics
Matches: 75, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
18 2 0.03
19 28 0.37
20 25 0.33
21 7 0.09
22 12 0.16
23 1 0.01
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.45
Consensus pattern (19 bp):
TTATATTAATTAATCAAAT
Found at i:50325845 original size:27 final size:26
Alignment explanation
Indices: 50325787--50325845 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 26
50325777 TTAATAATAT
*
50325787 TTAAATAAATTAATCTAAATTATATTA
1 TTAAAT-AATTAATCCAAATTATATTA
50325814 -T---TAATTAATCCAAATTATATTAA
1 TTAAATAATTAATCCAAATTATATT-A
50325837 TTAAATAAT
1 TTAAATAAT
50325846 ATTTAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 10
0.70 0.03 0.27
Matches are distributed among these distances:
22 18 0.69
23 2 0.08
24 1 0.04
26 1 0.04
27 4 0.15
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (26 bp):
TTAAATAATTAATCCAAATTATATTA
Found at i:50326844 original size:11 final size:11
Alignment explanation
Indices: 50326811--50326844 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
50326801 AAATATTAGA
*
50326811 AAATTATTTTT
1 AAATTATATTT
50326822 AAATTATAATTT
1 AAATTAT-ATTT
50326834 AAATTATATTT
1 AAATTATATTT
50326845 GATGTTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
AAATTATATTT
Found at i:50329247 original size:37 final size:37
Alignment explanation
Indices: 50329197--50329302 Score: 194
Period size: 37 Copynumber: 2.9 Consensus size: 37
50329187 GCTCGAATAG
*
50329197 TCTCCACACGTAGTTATCGGGTCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
50329234 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
50329271 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
50329303 ATATATTTCC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:50329501 original size:48 final size:48
Alignment explanation
Indices: 50329443--50329866 Score: 758
Period size: 48 Copynumber: 8.8 Consensus size: 48
50329433 ATATACACAC
* * *
50329443 ATCTCCTACATATTTCACACTAGCCATTCCGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50329491 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
50329539 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50329587 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
50329635 ATCTCATACATATTTCACTTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
50329683 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
50329731 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
50329779 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50329827 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
50329867 GCACATATAT
Statistics
Matches: 363, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 363 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:50334676 original size:18 final size:18
Alignment explanation
Indices: 50334653--50334689 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
50334643 CCAGATAAGC
50334653 CTCACAACCCTTACGAAT
1 CTCACAACCCTTACGAAT
50334671 CTCACAACCCTTACGAAT
1 CTCACAACCCTTACGAAT
50334689 C
1 C
50334690 CATTTCTCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.41, G:0.05, T:0.22
Consensus pattern (18 bp):
CTCACAACCCTTACGAAT
Found at i:50337666 original size:27 final size:27
Alignment explanation
Indices: 50337625--50337736 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
50337615 AGCATGGCTG
* * *
50337625 CCAGA-ACAAATATTGTGACAAAGTCA
1 CCAGATACAGATATTGTGGCAAAGCCA
*
50337651 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATATTGTGGCAAAGCCA
*
50337678 CCA-AAACAGATATTTGTGGCAAAGCCA
1 CCAGATACAGATA-TTGTGGCAAAGCCA
* * *
50337705 CCAGATA-ACATATTTGTGGTAGAGCCA
1 CCAGATACAGATA-TTGTGGCAAAGCCA
50337732 CCAGA
1 CCAGA
50337737 ACGCTTCTTC
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.18
27 58 0.79
28 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (27 bp):
CCAGATACAGATATTGTGGCAAAGCCA
Found at i:50337722 original size:54 final size:53
Alignment explanation
Indices: 50337629--50337734 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 53
50337619 TGGCTGCCAG
*
50337629 AACAAATATTGTGACAAAGTCACCAGATACAGATATTGTGGCAGAGCCACCAA
1 AACAAATATTGTGACAAAGCCACCAGATACAGATATTGTGGCAGAGCCACCAA
* * * *
50337682 AACAGATATTTGTGGCAAAGCCACCAGATA-ACATATTTGTGGTAGAGCCACCA
1 AACAAATA-TTGTGACAAAGCCACCAGATACAGATA-TTGTGGCAGAGCCACCA
50337735 GAACGCTTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
53 11 0.24
54 35 0.76
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.21
Consensus pattern (53 bp):
AACAAATATTGTGACAAAGCCACCAGATACAGATATTGTGGCAGAGCCACCAA
Found at i:50341468 original size:45 final size:45
Alignment explanation
Indices: 50341412--50341569 Score: 178
Period size: 45 Copynumber: 3.5 Consensus size: 45
50341402 TAAGAAATTC
* *
50341412 GAGCTCGTTGAGTTGGTCCGAGTTCATGATATATGTGAGAAATCT
1 GAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGTGAGACATCT
* * * * *
50341457 GAACTTGTTGAGTTGGTCTAAGTTCGTGGTATATGTGA-AGCATCT
1 GAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGTGAGA-CATCT
* **
50341502 GAGCTCGTTGAGTTGGTCCAAGTTCATTATGGAT-TCGAG-CATCT
1 GAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGT-GAGACATCT
*
50341546 GAGCTCGTTGAGTTGGTCCGAGTT
1 GAGCTCGTTGAGTTGGTCCAAGTT
50341570 AATAATGGAA
Statistics
Matches: 94, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
44 30 0.32
45 64 0.68
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.35
Consensus pattern (45 bp):
GAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGTGAGACATCT
Found at i:50343943 original size:27 final size:26
Alignment explanation
Indices: 50343887--50343943 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
50343877 CAACCTTAAC
* * *
50343887 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
50343913 CCTAGGGGTAAATCTA-TAAATTTTCCA
1 CCTAGGGGTAAATC-AGT-AATTTTCCA
50343940 CCTA
1 CCTA
50343944 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:50345196 original size:5 final size:5
Alignment explanation
Indices: 50345186--50345217 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
50345176 GTAGATGAAG
50345186 AGAAA AGAAA AGAAA AGAAA AGAAGA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAA-A AGAAA A
50345218 AAATGAATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:50345204 original size:15 final size:16
Alignment explanation
Indices: 50345162--50345217 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
50345152 TATGCGGGAA
*
50345162 AAGAAGAAGAG-AAAG
1 AAGAAGAAAAGAAAAG
* * *
50345177 TAGATGAAGAGAAAAG
1 AAGAAGAAAAGAAAAG
50345193 AA-AAGAAAAGAAAAG
1 AAGAAGAAAAGAAAAG
50345208 AAGAAGAAAA
1 AAGAAGAAAA
50345218 AAATGAATCC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 22 0.65
16 12 0.35
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.04
Consensus pattern (16 bp):
AAGAAGAAAAGAAAAG
Found at i:50346863 original size:27 final size:27
Alignment explanation
Indices: 50346841--50346991 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
50346831 TTGGTTTACC
50346841 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
50346868 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
50346895 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50346922 AAATTACCAAAATA-CCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
50346948 AAATTATCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50346975 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
50346992 TCAATTTGTA
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
26 24 0.22
27 83 0.78
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:50346906 original size:54 final size:54
Alignment explanation
Indices: 50346841--50347100 Score: 236
Period size: 53 Copynumber: 4.9 Consensus size: 54
50346831 TTGGTTTACC
* *
50346841 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTATA
*
50346895 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-TAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTATA
* * * * * *
50346948 AAATTATCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCA-ATT-T-
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTATA
* * ** * * *
50346999 ---GTA--AAAATACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCTAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTT-AGTTTAT-A
* * *
50347050 AAATTA-TAGAAATACCCCGGGTTTGTAAAATTATCAAAATACCAC-TAGTTT
1 AAATTACCA-AAATACCCCTGGTTTGTAAAATTACCAAAATACC-CTTAGTTT
50347101 GTGAAAAATT
Statistics
Matches: 167, Mismatches: 27, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
46 30 0.18
47 1 0.01
48 4 0.02
49 1 0.01
52 1 0.01
53 49 0.29
54 46 0.28
55 5 0.03
56 29 0.17
57 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTATA
Found at i:50346973 original size:53 final size:53
Alignment explanation
Indices: 50346841--50347107 Score: 246
Period size: 54 Copynumber: 5.1 Consensus size: 53
50346831 TTGGTTTACC
* * *
50346841 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-TAGTTTGTA
50346895 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTAGTTTGTA
* * * * *
50346948 AAATTATCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTG--
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT-AGTTTGTA
* ** * * *
50347000 ----TA--AAAATACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCTAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-T-AGTTTGT-A
* * *
50347050 AAATTA-TAGAAATACCCCGGGTTTGTAAAATTATCAAAATACCACTAGTTTGTGA
1 AAATTACCA-AAATACCCCTGGTTTGTAAAATTACCAAAATACC-CTAGTTTGT-A
50347105 AAA
1 AAA
50347108 ATTTACAGAA
Statistics
Matches: 174, Mismatches: 27, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
46 29 0.17
47 5 0.03
48 2 0.01
53 48 0.28
54 50 0.29
55 10 0.06
56 29 0.17
57 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (53 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTAGTTTGTA
Found at i:50346999 original size:27 final size:26
Alignment explanation
Indices: 50346841--50347009 Score: 194
Period size: 27 Copynumber: 6.3 Consensus size: 26
50346831 TTGGTTTACC
*
50346841 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTAGTTTGTA
* * *
50346868 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCC-TAGTTTGTA
*
50346895 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTAGTTTGTA
50346922 AAATTACCAAAATACCCTAGTTTGTA
1 AAATTACCAAAATACCCTAGTTTGTA
* * *
50346948 AAATTATCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACC-CTAGTTTGTA
* *
50346975 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCT-AGTTTGTA
*
50347002 AAAATACC
1 AAATTACC
50347010 CCTGATTTAC
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 31 0.25
27 88 0.72
28 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCTAGTTTGTA
Found at i:50347000 original size:80 final size:81
Alignment explanation
Indices: 50346841--50347009 Score: 211
Period size: 80 Copynumber: 2.1 Consensus size: 81
50346831 TTGGTTTACC
* *
50346841 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
**
50346906 ATACCCCTGGTTTGTA
66 ATACCCCTAATTTGTA
* * *
50346922 AAATTACCAAAATA-CCCTAGTTTGTAAAATTA-TCAAAATACCAC-TGGTTTGTGAAATTACCG
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACT-AAAATACC-CTTGGTTTATAAAATTACCA
50346984 AAATA-CCCTCAATTTGTA
64 AAATACCCCT-AATTTGTA
*
50347002 AAAATACC
1 AAATTACC
50347010 CCTGATTTAC
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 5 0.06
80 57 0.74
81 15 0.19
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
ATACCCCTAATTTGTA
Found at i:50347062 original size:29 final size:28
Alignment explanation
Indices: 50347020--50347151 Score: 108
Period size: 29 Copynumber: 4.6 Consensus size: 28
50347010 CCTGATTTAC
* *
50347020 AAAATTACAAAAATACCCTTGACTTTCTA
1 AAAATTATAGAAATACCC-TGACTTTCTA
* ** *
50347049 AAAATTATAGAAATACCCCGGGTTTGT-
1 AAAATTATAGAAATACCCTGACTTTCTA
* *
50347076 AAAATTATCA-AAATACCACT-AGTTTGTGA
1 AAAATTAT-AGAAATACC-CTGACTTTCT-A
*
50347105 AAAATTTACAGAAATACCCTTGACTTTCTA
1 AAAA-TTATAGAAATACCC-TGACTTTCTA
50347135 AAAATTATAGAAATACC
1 AAAATTATAGAAATACC
50347152 ATTGGTTTAG
Statistics
Matches: 83, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
27 21 0.25
28 7 0.08
29 34 0.41
30 16 0.19
31 5 0.06
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (28 bp):
AAAATTATAGAAATACCCTGACTTTCTA
Found at i:50347207 original size:27 final size:27
Alignment explanation
Indices: 50347177--50347373 Score: 216
Period size: 27 Copynumber: 7.3 Consensus size: 27
50347167 TACTAAAATG
** *
50347177 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * * * * *
50347204 CCCT-TATTTATATAATTATCGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
50347230 CCTTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
50347257 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
50347284 CCCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
50347311 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
50347338 CCCTCAATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
50347365 CCCTCGATT
1 CCCTCGATT
50347374 GTGAAATTAC
Statistics
Matches: 146, Mismatches: 23, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
26 19 0.13
27 127 0.87
ACGTcount: A:0.29, C:0.22, G:0.06, T:0.42
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:50347337 original size:81 final size:81
Alignment explanation
Indices: 50347177--50347373 Score: 254
Period size: 81 Copynumber: 2.4 Consensus size: 81
50347167 TACTAAAATG
* * * * * * *
50347177 CCCTCGATTTGTAGAATTACCATTTTACCCT-TATTTATATAATTATCGTTTCACCTTCGATTTA
1 CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTATCATTTCACCCTCGATTTA
* *
50347241 CAAAATTATCGTTTTA
66 CAAAATTACCATTTTA
*
50347257 CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTA-CTATTTTACCCTCGATTT
1 CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTATC-ATTTCACCCTCGATTT
50347321 ACAAAATTACCATTTTA
65 ACAAAATTACCATTTTA
* * *
50347338 CCCTCAATTTACAAAATTACTATTTTACCCTCGATT
1 CCCTCGATTTATAGAATTACTATTTTACCCTCGATT
50347374 GTGAAATTAC
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 30 0.29
81 72 0.71
ACGTcount: A:0.29, C:0.22, G:0.06, T:0.42
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTATCATTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:50347612 original size:27 final size:27
Alignment explanation
Indices: 50347386--50347842 Score: 546
Period size: 27 Copynumber: 17.0 Consensus size: 27
50347376 GAAATTACTA
* *
50347386 AAATACCCCTGTAGGATAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
** * *
50347413 AAATACCCCTAGT-TTGTAAAATTACCA
1 AAATACCCCT-GTAGGGTAGAATTACCG
** *
50347440 AAATACCCCTAGT-TTGTAAAATTACCG
1 AAATACCCCT-GTAGGGTAGAATTACCG
* *
50347467 AAATACCCTTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
50347494 AAATACCCCTGTAGGGTAGAATTACC-
1 AAATACCCCTGTAGGGTAGAATTACCG
*
50347520 AGAATACCCCTGTGGGGTAGAATTACCG
1 A-AATACCCCTGTAGGGTAGAATTACCG
* *
50347548 GAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
50347575 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
50347602 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
** *
50347629 AAATACCTTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
50347656 GAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
50347683 AAATACCCCTGTAGGGTAGAGTTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
50347710 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
50347737 CAATACCCCTGTAGAGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * **
50347764 AAATACGCCTATAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
50347791 AAATACCCCTATAGGGT-GAAATTACCG
1 AAATACCCCTGTAGGGTAG-AATTACCG
* * * *
50347818 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
50347843 ATTTTTCCCC
Statistics
Matches: 376, Mismatches: 48, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
26 18 0.05
27 356 0.95
28 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:50348562 original size:27 final size:26
Alignment explanation
Indices: 50348527--50348583 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 26
50348517 GGTGGCTATG
*
50348527 TCTGTTCTGGTGGCTCTGCCACAATA
1 TCTGTTCTGGTGACTCTGCCACAATA
*
50348553 TCTGTATCTGGTGACTCTGTCACAATA
1 TCTGT-TCTGGTGACTCTGCCACAATA
50348580 TCTG
1 TCTG
50348584 ATAACTGAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGTTCTGGTGACTCTGCCACAATA
Found at i:50348758 original size:6 final size:6
Alignment explanation
Indices: 50348743--50348833 Score: 62
Period size: 6 Copynumber: 14.8 Consensus size: 6
50348733 ATTCTTTTAC
* * * *
50348743 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTAATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
50348792 CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
50348834 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 55 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:50348766 original size:31 final size:31
Alignment explanation
Indices: 50348720--50348791 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
50348710 TTGCATTCAC
* *
50348720 ATTCTGATTTTTGATTCTTTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTAATACTG
50348752 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
50348783 ATTCTGATT
1 ATTCTGATT
50348792 CTGTCACCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 31 0.82
32 7 0.18
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATACTG
Found at i:50348783 original size:25 final size:25
Alignment explanation
Indices: 50348755--50348819 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
50348745 GATACTGATT
* *
50348755 CTGATTTTGATTCTGTTACCTAATA
1 CTGATTCTGATTCTGTCACCTAATA
*
50348780 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
50348805 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
50348820 ATTCTAGTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:50348815 original size:31 final size:30
Alignment explanation
Indices: 50348720--50348824 Score: 103
Period size: 31 Copynumber: 3.6 Consensus size: 30
50348710 TTGCATTCAC
* * *
50348720 ATTCTGATTTTTGATTCTTTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTAAT-CTG
*
50348752 ATTCTGATTTTGATTCTGTTACCTAA--T-
1 ATTCTGATTCTGATTCTGTTACCTAATCTG
*
50348779 A--CTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTAA-TCTG
50348808 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
50348825 AGTTCTGATA
Statistics
Matches: 63, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
25 21 0.33
27 1 0.02
28 2 0.03
29 1 0.02
31 31 0.49
32 7 0.11
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCTAATCTG
Found at i:50350782 original size:27 final size:27
Alignment explanation
Indices: 50350751--50350898 Score: 165
Period size: 27 Copynumber: 5.5 Consensus size: 27
50350741 TTAGTTTACC
50350751 AAATTACCAAAATACCCCTGGATTGTA
1 AAATTACCAAAATACCCCTGGATTGTA
*
50350778 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGATTGTA
* * * *
50350805 AAATTATCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTGGATTGTA
* * **
50350832 AAATTACCGAAATA-CCATCAATTTGTA
1 AAATTACCAAAATACCCCTGGA-TTGTA
*
50350859 AAATTACCAAAATACCCCT-GATTTATA
1 AAATTACCAAAATACCCCTGGA-TTGTA
*
50350886 AAATTACAAAAAT
1 AAATTACCAAAAT
50350899 TACCAAAAAT
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.02
27 97 0.95
28 3 0.03
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGATTGTA
Found at i:50350977 original size:27 final size:27
Alignment explanation
Indices: 50350941--50351138 Score: 225
Period size: 27 Copynumber: 7.3 Consensus size: 27
50350931 TACTAAAATG
* *
50350941 CCCTCGATTTGTAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
50350968 CCTTCTATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
50350995 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
50351022 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
50351049 CCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
50351076 CCCTTGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
** * * *
50351103 CCCTAAATTTACAAAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
50351130 CCCTCGATT
1 CCCTCGATT
50351139 GTAAAATTAC
Statistics
Matches: 143, Mismatches: 28, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.42
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:50351061 original size:81 final size:81
Alignment explanation
Indices: 50350941--50351138 Score: 306
Period size: 81 Copynumber: 2.4 Consensus size: 81
50350931 TACTAAAATG
* * *
50350941 CCCTCGATTTGTAGAATTACTATTTTACCTTCTATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
50351006 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
50351022 CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTATCGTTTTACCCTTGATTTA
1 CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
50351087 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
** * *
50351103 CCCTAAATTTACAAAATTACTATTTTACCCTCGATT
1 CCCTCGATTTATAGAATTACTATTTTACCCTCGATT
50351139 GTAAAATTAC
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.42
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:50351200 original size:27 final size:27
Alignment explanation
Indices: 50351137--50351229 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 27
50351127 TTACCCTCGA
**
50351137 TTGTAAAATTACTGAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
** * * *
50351163 AGGATAGAATTACCAAATTACCCTTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
50351191 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
50351218 TTGTAAATTTAC
1 TTGTAAAATTAC
50351230 TGAAATTGTA
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
26 1 0.02
27 48 0.92
28 3 0.06
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:50353445 original size:46 final size:45
Alignment explanation
Indices: 50353346--50353437 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 45
50353336 TAACCCGCCA
* *
50353346 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACC
*
50353392 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACC
50353436 AT
1 AT
50353438 CCTAGTGACA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 9 0.21
46 34 0.79
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.22
Consensus pattern (45 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACC
Found at i:50354844 original size:38 final size:38
Alignment explanation
Indices: 50354793--50354885 Score: 177
Period size: 38 Copynumber: 2.4 Consensus size: 38
50354783 CTGCCCTGTA
*
50354793 CCAGCCCTACACTCCATGTGGGGAATATCTCAACCCAC
1 CCAGCCCTACACTCCACGTGGGGAATATCTCAACCCAC
50354831 CCAGCCCTACACTCCACGTGGGGAATATCTCAACCCAC
1 CCAGCCCTACACTCCACGTGGGGAATATCTCAACCCAC
50354869 CCAGCCCTACACTCCAC
1 CCAGCCCTACACTCCAC
50354886 AGTTGCAGCA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.26, C:0.44, G:0.14, T:0.16
Consensus pattern (38 bp):
CCAGCCCTACACTCCACGTGGGGAATATCTCAACCCAC
Found at i:50355753 original size:27 final size:27
Alignment explanation
Indices: 50355723--50355775 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
50355713 GGGGCAAAAT
*
50355723 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50355750 GGTAATTTTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
50355776 TAGTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.38
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:50355906 original size:28 final size:27
Alignment explanation
Indices: 50355738--50355895 Score: 201
Period size: 27 Copynumber: 5.8 Consensus size: 27
50355728 TTCTACCTTA
* * **
50355738 CAGGGGTATTTCGGTAATTTTACCCTA-
1 CAGGGGTATTTTGGTAATTTT-GCAAAC
*
50355765 CAGGGGTATTTTAGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
* *
50355792 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
50355819 CAGGGGTATTTTGGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
* *
50355846 TAGGGATATTTTGGGTAATTTTGCAAAC
1 CAGGGGTATTTT-GGTAATTTTGCAAAC
*
50355874 TAGGGGTATTTTGGTAATTTTG
1 CAGGGGTATTTTGGTAATTTTG
50355896 TAAATCGAGG
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.02
27 88 0.76
28 26 0.22
ACGTcount: A:0.26, C:0.10, G:0.24, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTGCAAAC
Found at i:50355917 original size:27 final size:27
Alignment explanation
Indices: 50355887--50355956 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
50355877 GGGTATTTTG
*
50355887 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
50355914 GTAATTCTATAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAATA
50355941 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
50355957 GGAGTACTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.03
27 35 0.95
28 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATA
Found at i:50355928 original size:82 final size:83
Alignment explanation
Indices: 50355778--50355933 Score: 181
Period size: 82 Copynumber: 1.9 Consensus size: 83
50355768 GGGTATTTTA
* *** * * *
50355778 GTAATTTTGCAAACCATGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCA
1 GTAATTTTGCAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTAAAATAGTAATTCTACA
50355843 AACT-AGGGATATTTTGG
66 AACTGAGGGATATTTTGG
* ** * *
50355860 GTAATTTTGCAAACTAGGGGTATTTTGGTAATTTTGTAAATC-GAGGGTAAAATAGTAATTCTAT
1 GTAATTTTGCAAACCAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTAAAATAGTAATTCTAC
50355924 AAACTGAGGG
65 AAACTGAGGG
50355934 TAAAATGGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
81 1 0.02
82 55 0.92
83 4 0.07
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (83 bp):
GTAATTTTGCAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTAAAATAGTAATTCTACA
AACTGAGGGATATTTTGG
Found at i:50357043 original size:27 final size:27
Alignment explanation
Indices: 50357013--50357474 Score: 496
Period size: 27 Copynumber: 17.1 Consensus size: 27
50357003 ATCCAGGGTG
* *
50357013 TTACAGAAATACCCCTGTAGGGCAAAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
* * *
50357040 TTACTGAAATACCCCTGTAGGGCAAAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
* * *
50357067 TTATC-GAATTACCCCTATAGGGTAAAA
1 TTA-CAGAAATACCCCTGTAGGGTAGAA
*
50357094 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
50357121 TTACCAG-AATACCCCTGTAGGGTAGAA
1 TTA-CAGAAATACCCCTGTAGGGTAGAA
50357148 TTACCAG-AATACCCCTGTAGGGTAGAA
1 TTA-CAGAAATACCCCTGTAGGGTAGAA
* *
50357175 TTATC-GGAATACCCCTGTGGGGTAGAA
1 TTA-CAGAAATACCCCTGTAGGGTAGAA
*
50357202 TTACCCG-AATACCCCTGTAGGGTAGAA
1 TTA-CAGAAATACCCCTGTAGGGTAGAA
* *
50357229 TTACCGAAATACCCCTGTAGGGTAAAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
*
50357256 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
* *
50357283 TTACCAG-AATACCCTTGTAGGGCAGAA
1 TTA-CAGAAATACCCCTGTAGGGTAGAA
*
50357310 TTATC-GAAATACCCCTGTAGGGTAGAG
1 TTA-CAGAAATACCCCTGTAGGGTAGAA
*
50357337 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
*
50357364 TTATC-GCAATACCCCTGTAGGGTAGAA
1 TTA-CAGAAATACCCCTGTAGGGTAGAA
* * *
50357391 TTTCCGAAATACCCCTATAGGGTAGAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
*
50357418 TTACTA-AAATACCCCTATAGGGT-GAAA
1 TTAC-AGAAATACCCCTGTAGGGTAG-AA
* * * * *
50357445 TTACTGAGATA-CCTTGTGGGGTAAAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
50357471 TTAC
1 TTAC
50357475 CATTTTGCCT
Statistics
Matches: 385, Mismatches: 35, Indels: 31
0.85 0.08 0.07
Matches are distributed among these distances:
26 23 0.06
27 355 0.92
28 7 0.02
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
TTACAGAAATACCCCTGTAGGGTAGAA
Found at i:50357161 original size:81 final size:81
Alignment explanation
Indices: 50357013--50357448 Score: 574
Period size: 81 Copynumber: 5.4 Consensus size: 81
50357003 ATCCAGGGTG
* * * * * * * *
50357013 TTACAGAAATACCCCTGTAGGGCAAAATTA-CTGAAATACCCCTGTAGGGCAAAATTATCGAATT
1 TTACCGAAATACCCCTGTAGGGTAGAATTACCAG-AATACCCCTGTAGGGTAGAATTACCGAAAT
* *
50357077 ACCCCTATAGGGTAAAA
65 ACCCCTGTAGGGTAGAA
50357094 TTACCGAAATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACC-AGAAT
1 TTACCGAAATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGA-AAT
50357158 ACCCCTGTAGGGTAGAA
65 ACCCCTGTAGGGTAGAA
* * * *
50357175 TTATCGGAATACCCCTGTGGGGTAGAATTACCCGAATACCCCTGTAGGGTAGAATTACCGAAATA
1 TTACCGAAATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGAAATA
*
50357240 CCCCTGTAGGGTAAAA
66 CCCCTGTAGGGTAGAA
* * * *
50357256 TTACTGAAATACCCCTGTAGGGTAGAATTACCAGAATACCCTTGTAGGGCAGAATTATCGAAATA
1 TTACCGAAATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGAAATA
*
50357321 CCCCTGTAGGGTAGAG
66 CCCCTGTAGGGTAGAA
* *
50357337 TTACCGAAATACCCCTGTAGGGTAGAATTATC-GCAATACCCCTGTAGGGTAGAATTTCCGAAAT
1 TTACCGAAATACCCCTGTAGGGTAGAATTACCAG-AATACCCCTGTAGGGTAGAATTACCGAAAT
*
50357401 ACCCCTATAGGGTAGAA
65 ACCCCTGTAGGGTAGAA
** *
50357418 TTACTAAAATACCCCTATAGGGT-GAAATTAC
1 TTACCGAAATACCCCTGTAGGGTAG-AATTAC
50357449 TGAGATACCT
Statistics
Matches: 313, Mismatches: 37, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
80 3 0.01
81 307 0.98
82 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (81 bp):
TTACCGAAATACCCCTGTAGGGTAGAATTACCAGAATACCCCTGTAGGGTAGAATTACCGAAATA
CCCCTGTAGGGTAGAA
Found at i:50358405 original size:31 final size:31
Alignment explanation
Indices: 50358367--50358426 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
50358357 ACATTCTGAT
50358367 TTTTGATTCTGTTACCTGATACAGATTCTAA
1 TTTTGATTCTGTTACCTGATACAGATTCTAA
*
50358398 TTTTGATTCTGTTACCTGATACTGATTCT
1 TTTTGATTCTGTTACCTGATACAGATTCT
50358427 GATTCTGTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACAGATTCTAA
Found at i:50358439 original size:25 final size:25
Alignment explanation
Indices: 50358401--50358458 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
50358391 ATTCTAATTT
* *
50358401 TGATTCTGTTACCTGATACTGATTC
1 TGATTCTGTCACCTAATACTGATTC
**
50358426 TGATTCTGTCACCTAATTTTGATTC
1 TGATTCTGTCACCTAATACTGATTC
*
50358451 TAATTCTG
1 TGATTCTG
50358459 ATTCTAGTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.47
Consensus pattern (25 bp):
TGATTCTGTCACCTAATACTGATTC
Found at i:50358450 original size:19 final size:19
Alignment explanation
Indices: 50358394--50358451 Score: 53
Period size: 25 Copynumber: 2.7 Consensus size: 19
50358384 GATACAGATT
*
50358394 CTAATTTTGATTCTGTTAC
1 CTAATTTTGATTCTGTCAC
50358413 CTGATACTGATTCTGATTCTGTCAC
1 CT-A-A-T--TT-TGATTCTGTCAC
50358438 CTAATTTTGATTCT
1 CTAATTTTGATTCT
50358452 AATTCTGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
19 9 0.28
20 3 0.09
21 1 0.03
22 2 0.06
23 1 0.03
24 3 0.09
25 13 0.41
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (19 bp):
CTAATTTTGATTCTGTCAC
Found at i:50358455 original size:12 final size:12
Alignment explanation
Indices: 50358438--50358472 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
50358428 ATTCTGTCAC
*
50358438 CTAATTTTGATT
1 CTAATTCTGATT
50358450 CTAATTCTGATT
1 CTAATTCTGATT
*
50358462 CTAGTTCTGAT
1 CTAATTCTGAT
50358473 AATGTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.23, C:0.14, G:0.11, T:0.51
Consensus pattern (12 bp):
CTAATTCTGATT
Found at i:50359323 original size:25 final size:26
Alignment explanation
Indices: 50359268--50359329 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
50359258 TATCTAATAA
*
50359268 TAATAATAATAATTTTATAAATATATC
1 TAATAATAA-AAATTTATAAATATATC
*
50359295 TAATCATAAAAATTTA-AAATAT-TC
1 TAATAATAAAAATTTATAAATATATC
50359319 GTAATAATAAA
1 -TAATAATAAA
50359330 TACAGTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 2 0.06
25 15 0.48
26 6 0.19
27 8 0.26
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (26 bp):
TAATAATAAAAATTTATAAATATATC
Found at i:50364210 original size:27 final size:27
Alignment explanation
Indices: 50364180--50364357 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
50364170 ATATTGAGCC
* * *
50364180 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
50364207 CGCACACTTAGTGCTACGTAATCATA-T
1 CGCACACTTAGTGCTACATAGTCA-ACT
50364234 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
50364262 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
50364289 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
50364316 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
50364343 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50364358 GTACAATTTA
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:50364319 original size:82 final size:81
Alignment explanation
Indices: 50364201--50364356 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
50364191 TGCTATATAA
* *
50364201 TCAACTCGCACACTTAGTGCTACGTAATCATATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCATATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50364266 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * *
50364283 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCATATCGCACACTTAGTGCAACATAGTCAAATCGCA
50364347 CACTTAGTGC
65 CACTTAGTGC
50364357 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCATATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50364856 original size:14 final size:14
Alignment explanation
Indices: 50364837--50364866 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
50364827 ATGGCATACT
50364837 TATGTATATATATA
1 TATGTATATATATA
50364851 TATGTATATATATA
1 TATGTATATATATA
50364865 TA
1 TA
50364867 CTTCGGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:50372454 original size:27 final size:27
Alignment explanation
Indices: 50372424--50372601 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
50372414 ATATTGAGCC
* *
50372424 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
50372451 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
50372478 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** * *
50372506 CGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
50372533 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
50372560 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
50372587 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50372602 GTACAATTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:50372530 original size:82 final size:81
Alignment explanation
Indices: 50372444--50372600 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
50372434 GTGCTATATA
* * *
50372444 ATCAACTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCG
1 ATCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCG
50372508 CACACTTAGTGCCGCATG
64 CACACTTAGTGCCGCATG
* * **
50372526 ATCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 ATCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
50372591 CACTTAGTGC
66 CACTTAGTGC
50372601 TGTACAATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.28
82 48 0.72
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
ATCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
CACTTAGTGCCGCATG
Found at i:50380413 original size:23 final size:25
Alignment explanation
Indices: 50380387--50380433 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
50380377 TATCATTCAT
*
50380387 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
50380410 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
50380434 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:50380754 original size:46 final size:45
Alignment explanation
Indices: 50380694--50380989 Score: 321
Period size: 38 Copynumber: 7.0 Consensus size: 45
50380684 TTTGACGTGA
* * * * *
50380694 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CA-TTTCATATCAGGT
50380740 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CATTTCATATCAGGT
50380786 TGCCATGGTATCTTTCAACCATGGTCTTA-CA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTTCATATCAGGT
* *
50380824 TGCCATGGTATCTTTCAACCATGATCTTACATATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CATTTCATATCAGGT
*
50380870 TTCCATGGTATCTTTCAACCATGGTCTTA-CA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTTCATATCAGGT
50380908 TGCCATGGTATCTTTCAACCATGGTCTTA-CA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTTCATATCAGGT
50380946 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CATTTCATATCAG
50380990 AGAGCACACT
Statistics
Matches: 221, Mismatches: 12, Indels: 34
0.83 0.04 0.13
Matches are distributed among these distances:
38 104 0.47
39 2 0.01
40 3 0.01
41 2 0.01
43 2 0.01
44 3 0.01
45 6 0.03
46 99 0.45
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACCATTTCATATCAGGT
Found at i:50380879 original size:84 final size:83
Alignment explanation
Indices: 50380738--50380978 Score: 397
Period size: 84 Copynumber: 3.0 Consensus size: 83
50380728 TTTCTGTCAT
50380738 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACA-ATTTCATATCAGGTTGCCATGGTATCTTTCA
50380803 ACCATGGTCTTACACACAG
65 ACCATGGTCTTACACACAG
* *
50380822 GTTGCCATGGTATCTTTCAACCATGATCTTACATATTTCATATCAGGTTTCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACA-ATTTCATATCAGGTTGCCATGGTATCTTTCA
50380887 ACCATGGTCTTACACACAG
65 ACCATGGTCTTACACACAG
50380906 GTTGCCATGGTATCTTTCAACCATGGTCTTAC-A---C--A-CAGGTTGCCATGGTATCTTTCAA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACAATTTCATATCAGGTTGCCATGGTATCTTTCAA
50380964 CCATGGTCTTACACA
66 CCATGGTCTTACACA
50380979 TTTCATATCA
Statistics
Matches: 152, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
76 37 0.24
77 1 0.01
79 1 0.01
82 1 0.01
84 112 0.74
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (83 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACAATTTCATATCAGGTTGCCATGGTATCTTTCAA
CCATGGTCTTACACACAG
Found at i:50383145 original size:24 final size:24
Alignment explanation
Indices: 50383109--50383159 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
50383099 TTCTTTCTTT
50383109 ATATACTTATAAAATAATAATAAA
1 ATATACTTATAAAATAATAATAAA
* *
50383133 ATAT-CTTATTAAAGTATTAATAAA
1 ATATACTTA-TAAAATAATAATAAA
50383157 ATA
1 ATA
50383160 ATATTATCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (24 bp):
ATATACTTATAAAATAATAATAAA
Found at i:50383168 original size:30 final size:29
Alignment explanation
Indices: 50383121--50383188 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
50383111 ATACTTATAA
*
50383121 AATAATAATAAAATATCTTATTAAAGT-ATT
1 AATAA-AATAAAATATCTAATTAAA-TAATT
*
50383151 AATAAAATAATATTATCTAATTAAATAATT
1 AATAAAATAA-AATATCTAATTAAATAATT
50383181 -ATAAAATA
1 AATAAAATA
50383189 TCAAAATATC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 14 0.41
30 20 0.59
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (29 bp):
AATAAAATAAAATATCTAATTAAATAATT
Found at i:50384498 original size:5 final size:5
Alignment explanation
Indices: 50384481--50384513 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
50384471 AAAAATGGTA
50384481 GGCCC GAGCCC GGCCC GGCCC GGCCC GGCCC GG
1 GGCCC G-GCCC GGCCC GGCCC GGCCC GGCCC GG
50384514 TCATATTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.03, C:0.55, G:0.42, T:0.00
Consensus pattern (5 bp):
GGCCC
Found at i:50384582 original size:25 final size:23
Alignment explanation
Indices: 50384553--50384618 Score: 68
Period size: 25 Copynumber: 3.0 Consensus size: 23
50384543 AAATAAAAAA
*
50384553 ATTTAAAATATAATAAATCAAATAC
1 ATTTAAAACATAA-AAA-CAAATAC
50384578 ATTTAAAACATAAAAACAAAT--
1 ATTTAAAACATAAAAACAAATAC
*
50384599 A-TTAAAACA-AAAAATAAATA
1 ATTTAAAACATAAAAACAAATA
50384619 AATAATGGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.21
21 1 0.03
23 5 0.13
24 3 0.08
25 12 0.32
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
ATTTAAAACATAAAAACAAATAC
Found at i:50384617 original size:19 final size:20
Alignment explanation
Indices: 50384580--50384618 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
50384570 TCAAATACAT
50384580 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
50384600 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
50384619 AATAATGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:50386819 original size:10 final size:10
Alignment explanation
Indices: 50386796--50386855 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
50386786 TAATTTTAGG
50386796 ATTTAT-TTT
1 ATTTATCTTT
*
50386805 CATTTACCTTT
1 -ATTTATCTTT
50386816 ATTTATCTTT
1 ATTTATCTTT
*
50386826 AATTATCTTT
1 ATTTATCTTT
50386836 ATTTAT-TTGT
1 ATTTATCTT-T
50386846 ATTTATCTTT
1 ATTTATCTTT
50386856 TAGAATTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:50387604 original size:17 final size:18
Alignment explanation
Indices: 50387573--50387606 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
50387563 TATTCCTCAT
50387573 TTTAATTTTTGCAATTTA
1 TTTAATTTTTGCAATTTA
50387591 TTTAATTTTT-CAATTT
1 TTTAATTTTTGCAATTT
50387607 CAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTAATTTTTGCAATTTA
Found at i:50389437 original size:10 final size:9
Alignment explanation
Indices: 50389422--50389482 Score: 58
Period size: 10 Copynumber: 6.9 Consensus size: 9
50389412 CAACCCAATT
50389422 TTTATTTTA
1 TTTATTTTA
50389431 GTTTATTTTA
1 -TTTATTTTA
*
50389441 TTTTTATTTA
1 TTTAT-TTTA
50389451 TTTATTCTTA
1 TTTATT-TTA
50389461 -TTATTTTA
1 TTTATTTTA
50389469 -TTA-TTTA
1 TTTATTTTA
50389476 -TTATTTT
1 TTTATTTT
50389483 CAGATATTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
7 7 0.15
8 9 0.20
9 10 0.22
10 20 0.43
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (9 bp):
TTTATTTTA
Found at i:50391091 original size:10 final size:10
Alignment explanation
Indices: 50391076--50391135 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
50391066 TAATTTTAGG
50391076 ATTTAT-TTT
1 ATTTATCTTT
50391085 CATTTATCTTT
1 -ATTTATCTTT
50391096 ATTTATCTTT
1 ATTTATCTTT
*
50391106 AATTATCTTT
1 ATTTATCTTT
50391116 ATTTAT-TTGT
1 ATTTATCTT-T
50391126 ATTTATCTTT
1 ATTTATCTTT
50391136 TAGAATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:50396798 original size:3 final size:3
Alignment explanation
Indices: 50396790--50396838 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
50396780 TAATCCTACT
50396790 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
50396838 T
1 T
50396839 CTTAAAGCAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:50397764 original size:28 final size:28
Alignment explanation
Indices: 50397701--50397773 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
50397691 AGTTGCAACG
*
50397701 AAAATGAAAAATTGG---TAATATTGAA
1 AAAATGAAAAATTGGTCCTAATATTAAA
50397726 AAAAT-AAAAATTGGTCCTACAT-TTAAA
1 AAAATGAAAAATTGGTCCTA-ATATTAAA
50397753 AAAATGAAAAATTGGTCCTAA
1 AAAATGAAAAATTGGTCCTAA
50397774 ACATGGTGCA
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
24 9 0.21
25 5 0.12
27 12 0.29
28 16 0.38
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.27
Consensus pattern (28 bp):
AAAATGAAAAATTGGTCCTAATATTAAA
Found at i:50398200 original size:25 final size:25
Alignment explanation
Indices: 50398166--50398253 Score: 71
Period size: 25 Copynumber: 3.7 Consensus size: 25
50398156 TTAAAAATAT
*
50398166 AAATTTATTATCATAAATTATATTA
1 AAATTCATTATCATAAATTATATTA
* *
50398191 AAATTCATTA--ATACATTTTATTA
1 AAATTCATTATCATAAATTATATTA
* *
50398214 AAA-T-ATTTTTAT-AATTATATTA
1 AAATTCATTATCATAAATTATATTA
*
50398236 AAGTATCATTATCA-AAAT
1 AAAT-TCATTATCATAAAT
50398254 AATAATTATA
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
21 3 0.06
22 11 0.23
23 16 0.33
24 1 0.02
25 17 0.35
ACGTcount: A:0.47, C:0.06, G:0.01, T:0.47
Consensus pattern (25 bp):
AAATTCATTATCATAAATTATATTA
Found at i:50398247 original size:22 final size:22
Alignment explanation
Indices: 50398174--50398247 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 22
50398164 ATAAATTTAT
50398174 TATCA-TA-AATTATATTAAAA
1 TATCATTATAATTATATTAAAA
*
50398194 T-TCATTAATACATTTTATTAAAA
1 TATCATT-ATA-ATTATATTAAAA
** *
50398217 TATTTTTATAATTATATTAAAG
1 TATCATTATAATTATATTAAAA
50398239 TATCATTAT
1 TATCATTAT
50398248 CAAAATAATA
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
19 3 0.07
20 2 0.05
21 1 0.02
22 18 0.43
23 15 0.36
24 3 0.07
ACGTcount: A:0.45, C:0.05, G:0.01, T:0.49
Consensus pattern (22 bp):
TATCATTATAATTATATTAAAA
Found at i:50401763 original size:29 final size:28
Alignment explanation
Indices: 50401727--50401788 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
50401717 ACTCTGAAAC
*
50401727 CTCT-TCACTTTCCACCC-AAAACTTTATT
1 CTCTCTCACTTTCC-CCCTAAAACTTT-TA
50401755 CTCTCTCACTTTCCCCCTAAAACTTTTA
1 CTCTCTCACTTTCCCCCTAAAACTTTTA
50401783 CTCTCT
1 CTCTCT
50401789 TCTCATCCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 14 0.45
29 17 0.55
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.40
Consensus pattern (28 bp):
CTCTCTCACTTTCCCCCTAAAACTTTTA
Found at i:50403667 original size:20 final size:21
Alignment explanation
Indices: 50403622--50403668 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
50403612 AACGGTATAT
*
50403622 AAATATATACATATATGTATTA
1 AAATATATACATATA-GTAATA
50403644 AAATATATACATA-A-TAATA
1 AAATATATACATATAGTAATA
50403663 GAAATA
1 -AAATA
50403669 AAAATGTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 4 0.17
20 5 0.22
21 1 0.04
22 13 0.57
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (21 bp):
AAATATATACATATAGTAATA
Found at i:50404050 original size:9 final size:8
Alignment explanation
Indices: 50404036--50404075 Score: 50
Period size: 7 Copynumber: 5.4 Consensus size: 8
50404026 AATTTAATAA
50404036 ATATATAT
1 ATATATAT
50404044 ATA-ATAT
1 ATATATAT
50404051 ATATATA-
1 ATATATAT
50404058 ATATATAT
1 ATATATAT
*
50404066 ACATA-AT
1 ATATATAT
50404073 ATA
1 ATA
50404076 GTTTTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
7 18 0.64
8 10 0.36
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (8 bp):
ATATATAT
Found at i:50404054 original size:13 final size:13
Alignment explanation
Indices: 50404030--50404075 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
50404020 CATAAAAATT
*
50404030 TAATAAATATATA
1 TAATATATATATA
50404043 T-ATAATATATATA
1 TAAT-ATATATATA
*
50404056 TAATATATATACA
1 TAATATATATATA
50404069 TAATATA
1 TAATATA
50404076 GTTTTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 2 0.07
13 25 0.86
14 2 0.07
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (13 bp):
TAATATATATATA
Found at i:50404074 original size:11 final size:12
Alignment explanation
Indices: 50404011--50404075 Score: 64
Period size: 11 Copynumber: 5.6 Consensus size: 12
50404001 ACGATATTAA
50404011 AAATATATACAT
1 AAATATATACAT
* *
50404023 AAAAATTTA-AT
1 AAATATATACAT
*
50404034 AAATATATATAT
1 AAATATATACAT
*
50404046 -AATATATATAT
1 AAATATATACAT
50404057 AATATATATACAT
1 AA-ATATATACAT
50404070 -AATATA
1 AAATATA
50404076 GTTTTAAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
11 25 0.56
12 11 0.24
13 9 0.20
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (12 bp):
AAATATATACAT
Found at i:50404093 original size:2 final size:2
Alignment explanation
Indices: 50404036--50404075 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
50404026 AATTTAATAA
*
50404036 AT AT AT AT AT A- AT AT AT AT AT A- AT AT AT AT AC AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50404075 A
1 A
50404076 GTTTTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
1 3 0.09
2 30 0.91
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:50404299 original size:12 final size:11
Alignment explanation
Indices: 50404259--50404326 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 11
50404249 TATAAGTGTA
*
50404259 ATAATAGTAATT
1 ATAATAATAA-T
*
50404271 ATAATACTAAT
1 ATAATAATAAT
50404282 ACTAATAATAGAT
1 A-TAATAATA-AT
*
50404295 ATAATAATAGT
1 ATAATAATAAT
*
50404306 AGTAAAAATAAT
1 A-TAATAATAAT
50404318 ATAAATAAT
1 AT-AATAAT
50404327 GTGTACATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
11 5 0.11
12 38 0.83
13 3 0.07
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (11 bp):
ATAATAATAAT
Found at i:50406116 original size:44 final size:44
Alignment explanation
Indices: 50406066--50407676 Score: 1390
Period size: 44 Copynumber: 37.0 Consensus size: 44
50406056 AGATTCGCTG
** * * * *
50406066 TCTTCGATCTGCTCTCTGTCAATACAGAGACGCTAGATCTATCA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * ** *** *
50406110 TCTTCGATTTGCTCTCTGACAATACAGAGACGCTGGATCTGTCA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
*
50406154 TCTTCGATCTGCTCTCCT-CCGCTACAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCT-CTGTCGCTACAGAGACGCCAAATCTGTTA
* ** * *
50406198 TCTTTGATCTGCTCTCCATTGCTACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
** *
50406242 TCTTCGATCTGCTCTC-CACTTCTACAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTC-GCTACAGAGACGCCAAATCTGTTA
* * *
50406286 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
*
50406330 TCTTCGATCTGCTCTCCGTCGCTACAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * *
50406374 TCTTCAATCTGCTCT-TCGCCGCTACAGAGACACCAAATCTGTTA
1 TCTTCGATCTGCTCTCT-GTCGCTACAGAGACGCCAAATCTGTTA
* *
50406418 TCTTCGATCTGCTCACCGTCGCTACAGAGACGCCAAATC----A
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * ** * * ** *
50406458 TCTTGGATTTGCT-TC-ACCG-TAAACACGTGAAAGCCAAATCAACTATG
1 TCTTCGATCTGCTCTCTGTCGCT--ACA-GAG-ACGCCAAATC-TGT-TA
* * *
50406505 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* ***
50406549 TCTTCGATTTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* *
50406593 TCTTCGATCTGCTCTCTGCCGCTACAGAGATGCCAAATC-G---
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * ** * * ** *
50406633 TCTTGGATTTGCT-TC-ACCG-TAAACACGTGAAAGCCAAATCAACTATG
1 TCTTCGATCTGCTCTCTGTCGCT--ACA-GAG-ACGCCAAATC-TGT-TA
* * * *
50406680 TCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* *
50406724 TCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTATTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
*
50406768 TCTTCGATCTGCTCTCCGTCGCTACAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * *
50406812 TCTTTGATCTGCTCACCGTCGCTACAGAGACGCCAAATC-G---
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * ** * * ** *
50406852 TCTTGGATTTGCT-TC-ACCG-TAAACACGTGAAAGCCAAATCAACTATG
1 TCTTCGATCTGCTCTCTGTCGCT--ACA-GAG-ACGCCAAATC-TGT-TA
* * *
50406899 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* ***
50406943 TCTTCGATTTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * *
50406987 TCTTCGATTTGCTCTCTGCCGCTACAGAGATGCCAAATC-G---
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * ** * * ** *
50407027 TCTTGGATTTGCTAC-C-GT--AAACACGTGAAAGCCAAATCAACTATG
1 TCTTCGATCTGCT-CTCTGTCGCTACA-GAG-ACGCCAAATC-TGT-TA
* * *
50407072 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
*
50407116 TCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * *
50407160 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* *
50407204 TCTTCGATCTACTCTCTGCCGCTACAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * *
50407248 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * *
50407292 TCTTTGATCTGTTCT-TCGTCGCTACAGAGACGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCT-GTCGCTACAGAGACGCCAAATCTGTTA
* * *
50407336 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC----A
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * * *
50407376 TCTTCGATTTGCTCTCCGGCGCTACTGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * *
50407420 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * *
50407464 TCTTTGATCTGTTCT-TCGTCGCTACAGAGACGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCT-GTCGCTACAGAGACGCCAAATCTGTTA
* * *
50407508 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC----A
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * * *
50407548 TCTTCGATTTGCTCTCCGGCGCTACTGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * *
50407592 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC----A
1 TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
* * *
50407632 TCTTCGATTTGCTCTCCGCCGCTACTA-AGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCGCTAC-AGAGACGCCAAATCTGTTA
50407676 T
1 T
50407677 TTGTTTCAAG
Statistics
Matches: 1319, Mismatches: 173, Indels: 150
0.80 0.11 0.09
Matches are distributed among these distances:
37 6 0.00
38 9 0.01
39 23 0.02
40 161 0.12
41 29 0.02
43 4 0.00
44 960 0.73
45 19 0.01
46 37 0.03
47 41 0.03
48 18 0.01
49 9 0.01
50 3 0.00
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.29
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTGTCGCTACAGAGACGCCAAATCTGTTA
Found at i:50406224 original size:88 final size:88
Alignment explanation
Indices: 50406066--50407676 Score: 1576
Period size: 88 Copynumber: 18.5 Consensus size: 88
50406056 AGATTCGCTG
* ** * * * * * * *
50406066 TCTTCGATCTGCTCT-CTGTCAATACAGAGACGCTAGATCTATCATCTTCGATTTGCTCTCTGAC
1 TCTTCGATCTGCTCTCCT-CCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
** *** * *
50406130 AATACAGAGACGCTGGATCTGTCA
65 GCTACAGAGACGCCAAATCTATTA
* ***
50406154 TCTTCGATCTGCTCTCCTCCGCTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCATTG
1 TCTTCGATCTGCTCTCCTCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
* *
50406219 CTACAGAGATGCCAAATCTGTTA
66 CTACAGAGACGCCAAATCTATTA
* **
50406242 TCTTCGATCTGCTCTCCACTTCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
1 TCTTCGATCTGCTCTCCTCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
50406307 CTACAGAGACGCCAAATCTATTA
66 CTACAGAGACGCCAAATCTATTA
* *
50406330 TCTTCGATCTGCTCTCCGT-CGCTACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCTTCGCC
1 TCTTCGATCTGCTCTCC-TCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
50406394 GCTACAGAGACACCAAATCTGTTA
65 GCTACAGAGACGCCAAATCTATTA
* * * *
50406418 TCTTCGATCTGCTCACCGT-CGCTACAGAGACGCCAAATC----ATCTTGGATTTGCT-T-CACC
1 TCTTCGATCTGCTCTCC-TCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * *
50406476 G-TAAACACGTGAAAGCCAAATCAACTATG
65 GCT--ACA-GAG-ACGCCAAATCTA-T-TA
* * * *
50406505 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATTTGCTCTCCACCG
1 TCTTCGATCTGCTCTCCTCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
*
50406570 CTACAGAGACGCCAAATCTGTTA
66 CTACAGAGACGCCAAATCTATTA
* * * *
50406593 TCTTCGATCTGCTCT-CTGCCGCTACAGAGATGCCAAATC-G---TCTTGGATTTGCT-T-CACC
1 TCTTCGATCTGCTCTCCT-CCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * *
50406651 G-TAAACACGTGAAAGCCAAATCAACTATG
65 GCT--ACA-GAG-ACGCCAAATCTA-T-TA
* * * *
50406680 TCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCG
1 TCTTCGATCTGCTCTCCTCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
50406745 CTACAGAGACGCCAAATCTATTA
66 CTACAGAGACGCCAAATCTATTA
* * *
50406768 TCTTCGATCTGCTCTCCGT-CGCTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCACCGTC
1 TCTTCGATCTGCTCTCC-TCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
*
50406832 GCTACAGAGACGCCAAATC----G
65 GCTACAGAGACGCCAAATCTATTA
* * * * * ** *
50406852 TCTTGGATTTGCT-T-CACCG-TAAACACGTGAAAGCCAAATCAACTATGTCTTCGATCTGCTCT
1 TCTTCGATCTGCTCTCCTCCGCT--ACA-GAG-ACGCCAAATC-TGT-TATCTTCGATCTGCTCT
* *
50406914 CCGCCGCTACAGAGATGCCAAATCTGTTA
60 CCGCCGCTACAGAGACGCCAAATCTATTA
* * * *
50406943 TCTTCGATTTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTCGATTTGCTCTCTGCCG
1 TCTTCGATCTGCTCTCCTCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
* *
50407008 CTACAGAGATGCCAAATC----G
66 CTACAGAGACGCCAAATCTATTA
* * * *** * * ** *
50407027 TCTTGGATTTGCTAC-CGTAAAC-AC-GTGAAAGCCAAATCAACTATGTCTTCGATCTGCTCTCC
1 TCTTCGATCTGCT-CTCCTCCGCTACAGAG-ACGCCAAATC-TGT-TATCTTCGATCTGCTCTCC
* *
50407089 GCCGCTACAGAGATGCCAAATCTGTTA
62 GCCGCTACAGAGACGCCAAATCTATTA
50407116 TCTTCGATCTGCTCT-CTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
1 TCTTCGATCTGCTCTCCT-CCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
50407180 GCTACAGAGATGCCAAATCTGTTA
65 GCTACAGAGACGCCAAATCTATTA
*
50407204 TCTTCGATCTACTCT-CTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
1 TCTTCGATCTGCTCTCCT-CCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
50407268 GCTACAGAGACGCCAAATCTATTA
65 GCTACAGAGACGCCAAATCTATTA
* * * *
50407292 TCTTTGATCTGTTCTTCGT-CGCTACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCCGCC
1 TCTTCGATCTGCTC-TCCTCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
*
50407356 GCTACAGAGATGCCAAATC----A
65 GCTACAGAGACGCCAAATCTATTA
* ** *
50407376 TCTTCGATTTGCTCTCCGGCGCTACTGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
1 TCTTCGATCTGCTCTCCTCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
50407441 CTACAGAGACGCCAAATCTATTA
66 CTACAGAGACGCCAAATCTATTA
* * * *
50407464 TCTTTGATCTGTTCTTCGT-CGCTACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCCGCC
1 TCTTCGATCTGCTC-TCCTCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
*
50407528 GCTACAGAGATGCCAAATC----A
65 GCTACAGAGACGCCAAATCTATTA
* ** *
50407548 TCTTCGATTTGCTCTCCGGCGCTACTGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
1 TCTTCGATCTGCTCTCCTCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
*
50407613 CTACAGAGATGCCAAATC----A
66 CTACAGAGACGCCAAATCTATTA
* *
50407632 TCTTCGATTTGCTCTCCGCCGCTACTA-AGACGCCAAATCTGTTAT
1 TCTTCGATCTGCTCTCCTCCGCTAC-AGAGACGCCAAATCTGTTAT
50407677 TTGTTTCAAG
Statistics
Matches: 1293, Mismatches: 162, Indels: 140
0.81 0.10 0.09
Matches are distributed among these distances:
81 3 0.00
82 14 0.01
83 27 0.02
84 245 0.19
85 65 0.05
86 3 0.00
87 110 0.09
88 693 0.54
89 21 0.02
90 40 0.03
91 44 0.03
92 12 0.01
93 13 0.01
94 3 0.00
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.29
Consensus pattern (88 bp):
TCTTCGATCTGCTCTCCTCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
CTACAGAGACGCCAAATCTATTA
Found at i:50406533 original size:87 final size:87
Alignment explanation
Indices: 50406418--50406718 Score: 389
Period size: 87 Copynumber: 3.4 Consensus size: 87
50406408 AAATCTGTTA
* * *
50406418 TCTTCGATCTGCTCACCGTCGCTACAGAGACGCCAAATCATCTTGGATTTGCTTCACCGTAAACA
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTGGATTTGCTTCACCGTAAACA
50406483 CGTGAAAGCCAAATCAACTATG
66 CGTGAAAGCCAAATCAACTATG
*
50406505 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATTTGCTCTCCACCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC----ATCTTGGATTTGCT-T-CACCG
* * ** *
50406570 CT--ACA-GAG-ACGCCAAATC-TGT-TA
60 -TAAACACGTGAAAGCCAAATCAACTATG
* *
50406593 TCTTCGATCTGCTCTCTGCCGCTACAGAGATGCCAAATCGTCTTGGATTTGCTTCACCGTAAACA
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTGGATTTGCTTCACCGTAAACA
50406658 CGTGAAAGCCAAATCAACTATG
66 CGTGAAAGCCAAATCAACTATG
*
50406680 TCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC
50406719 TGTTATCTTC
Statistics
Matches: 182, Mismatches: 19, Indels: 26
0.80 0.08 0.11
Matches are distributed among these distances:
81 1 0.01
82 5 0.03
83 4 0.02
84 14 0.08
85 9 0.05
86 1 0.01
87 74 0.41
88 39 0.21
89 1 0.01
90 9 0.05
91 15 0.08
92 4 0.02
93 5 0.03
94 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (87 bp):
TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTGGATTTGCTTCACCGTAAACA
CGTGAAAGCCAAATCAACTATG
Found at i:50406582 original size:219 final size:216
Alignment explanation
Indices: 50406066--50407676 Score: 1629
Period size: 219 Copynumber: 7.4 Consensus size: 216
50406056 AGATTCGCTG
* * ** * * * * * * * *
50406066 TCTTCGATCTGCTCTCTGTCAATACAGAGACGCTAGATCTATCATCTTCGATTTGCTCTCTGACA
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
* *** * * *
50406131 ATACAGAGACGCTGGATCTGTCATCTTCGATCTGCTCTCCTCCGCTACAGAGACGCCAAATCTGT
66 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGT
* * *
50406196 TATCTTTGATCTGCTCTCCATTGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTC-CA
131 TATCTTCGATCTGCTCTCCGTCGCTACAGAGATGCCAAATC---TATCTTCGATCTGCTCTCGC-
*
50406260 CTTCTACAGAGACGCCAAATCTGTTA
192 C-GCTACAGAGACGCCAAATCTGTTA
* *
50406286 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCCGTCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
* *
50406351 CTACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCTTCGCCGCTACAGAGACACCAAATCTGT
66 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGT
* * * * *
50406416 TATCTTCGATCTGCTCACCGTCGCTACAGAGACGCCAAATC-ATCTTGGATTTGCT-TCACCG-T
131 TATCTTCGATCTGCTCTCCGTCGCTACAGAGATGCCAAATCTATCTTCGATCTGCTCTCGCCGCT
* * ** *
50406478 AAACACGTGAAAGCCAAATCAACTATG
196 --ACA-GAG-ACGCCAAATC-TGT-TA
* * *
50406505 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATTTGCTCTCCACCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
*
50406570 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC-TCTGCCGCTACAGAGATGCCAAATC-G
66 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTC-GCCGCTACAGAGACGCCAAATCTG
* * * ** * * *
50406633 ---TCTTGGATTTGCTTCACCGT--AAACACGTGAAAGCCAAATCAACTATGTCTTTGATCTGCT
130 TTATCTTCGATCTGC-TCTCCGTCGCTACA-GAG-ATGCCAAAT---CTA--TCTTCGATCTGCT
*
50406693 CTCCGCCGCTACAGAGATGCCAAATCTGTTA
187 CT-CGCCGCTACAGAGACGCCAAATCTGTTA
* * *
50406724 TCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCCGTCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
* ** *
50406789 CTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCACCGTCGCTACAGAGACGCCAAATC-G-
66 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGT
* * * ** * *
50406852 --TCTTGGATTTGCTTCACCGT--AAACACGTGAAAGCCAAATCAACTATGTCTTCGATCTGCTC
131 TATCTTCGATCTGC-TCTCCGTCGCTACA-GAG-ATGCCAAAT---CTA--TCTTCGATCTGCTC
*
50406913 TCCGCCGCTACAGAGATGCCAAATCTGTTA
188 T-CGCCGCTACAGAGACGCCAAATCTGTTA
* * * *
50406943 TCTTCGATTTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTCGATTTGCTCTCTGCCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
* * * * * *
50407008 CTACAGAGATGCCAAATC-G---TCTTGGATTTG--C-T-ACCG-TAAACACGTGAAAGCCAAAT
66 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCGCT--ACA-GAG-ACGCCAAAT
** * *
50407064 CAACTATGTCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCT
127 C-TGT-TATCTTCGATCTGCTCTCCGTCGCTACAGAGATGCCAAATC---TATCTTCGATCTGCT
50407129 CTCTGCCGCTACAGAGACGCCAAATCTGTTA
187 CTC-GCCGCTACAGAGACGCCAAATCTGTTA
* * *
50407160 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTACTCTCTGCCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
* *
50407225 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTAT
66 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGT
* * * *
50407290 TATCTTTGATCTGTTCTTCGTCGCTACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCCGC
131 TATCTTCGATCTGCTCTCCGTCGCTACAGAGATGCCAAATC--T-ATCTTCGATCTGCTCT-CGC
*
50407355 CGCTACAGAGATGCCAAATC----A
192 CGCTACAGAGACGCCAAATCTGTTA
* * *
50407376 TCTTCGATTTGCTCTCCGGCGCTACTGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
* * * *
50407441 CTACAGAGACGCCAAATCTATTATCTTTGATCTGTTCTTCGTCGCTACAGAGACGCCAAATCTGT
66 CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGT
* * * *
50407506 CATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC-ATCTTCGATTTGCTCTCCGGCGC
131 TATCTTCGATCTGCTCTCCGTCGCTACAGAGATGCCAAATCTATCTTCGATCTGCTCT-CGCCGC
*
50407570 TACTGAGACGCCAAATCTGTTA
195 TACAGAGACGCCAAATCTGTTA
* *
50407592 TCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC----ATCTTCGATTTGCTCTCCGCCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
50407653 CTACTA-AGACGCCAAATCTGTTAT
66 CTAC-AGAGACGCCAAATCTGTTAT
50407677 TTGTTTCAAG
Statistics
Matches: 1196, Mismatches: 142, Indels: 114
0.82 0.10 0.08
Matches are distributed among these distances:
210 1 0.00
211 2 0.00
212 81 0.07
213 5 0.00
214 12 0.01
215 27 0.02
216 222 0.19
217 127 0.11
218 6 0.01
219 416 0.35
220 233 0.19
221 23 0.02
222 22 0.02
223 7 0.01
224 7 0.01
225 4 0.00
226 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.29
Consensus pattern (216 bp):
TCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
CTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGT
TATCTTCGATCTGCTCTCCGTCGCTACAGAGATGCCAAATCTATCTTCGATCTGCTCTCGCCGCT
ACAGAGACGCCAAATCTGTTA
Found at i:50418845 original size:18 final size:17
Alignment explanation
Indices: 50418815--50418848 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50418805 AAAAATTTGG
50418815 TTATTTTAATAAAACAT
1 TTATTTTAATAAAACAT
*
50418832 TTATGTTTACTAAAACA
1 TTAT-TTTAATAAAACA
50418849 ACAATTTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (17 bp):
TTATTTTAATAAAACAT
Found at i:50419459 original size:128 final size:126
Alignment explanation
Indices: 50419227--50419459 Score: 276
Period size: 128 Copynumber: 1.8 Consensus size: 126
50419217 GGGAGATTGC
* * *
50419227 AACCCACACGATAGGGCACTATTCCCGAACTGCCAAACATCAACATTCTTTCGTTTTAAAGGTTT
1 AACCCACACGATAGGGCACGATTCCCGAAATGCCAAACATCAACATCCTTTCGTTTTAAAGGTTT
* * * *
50419292 TTAGAAAACGTGGATGAAACTTCAAAGGGATCTTCGATTGCTTAGAATAAATGAAAAAGCG
66 TTAGAAAACATGGATGAAACCTCAAAGGAATATTCGATTGCTTAGAATAAATGAAAAAGCG
* * *
50419353 AACCCAACACGATAGGGCACGATTCTC-AAATATCCAATCATCGAACATCCTTT-GTTTTGAAAG
1 AACCC-ACACGATAGGGCACGATTCCCGAAAT-GCCAAACATC-AACATCCTTTCGTTTT-AAAG
* *
50419416 GTTTTTA-ATAAGCATGGGTGAAAACCT-AAAGGAATATTCGATTG
62 GTTTTTAGA-AAACATGGATG-AAACCTCAAAGGAATATTCGATTG
50419460 TTTTGAGCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
126 8 0.09
127 33 0.37
128 43 0.48
129 5 0.06
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (126 bp):
AACCCACACGATAGGGCACGATTCCCGAAATGCCAAACATCAACATCCTTTCGTTTTAAAGGTTT
TTAGAAAACATGGATGAAACCTCAAAGGAATATTCGATTGCTTAGAATAAATGAAAAAGCG
Found at i:50430832 original size:25 final size:25
Alignment explanation
Indices: 50430810--50430885 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 25
50430800 ATATAAATTT
50430810 ATTATCATAAATTATATTAAAAT-TC
1 ATTAT-ATAAATTATATTAAAATATC
* *
50430835 ATTA-ATACATTTTATTAAAATAT-
1 ATTATATAAATTATATTAAAATATC
*
50430858 -TTTTAT-AATTATATTAAAATATC
1 ATTATATAAATTATATTAAAATATC
50430881 ATTAT
1 ATTAT
50430886 CAAAATAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
22 16 0.39
23 17 0.41
24 4 0.10
25 4 0.10
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTATATAAATTATATTAAAATATC
Found at i:50430875 original size:22 final size:23
Alignment explanation
Indices: 50430819--50430884 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
50430809 TATTATCATA
50430819 AATTATATTAAAAT-TCATTAAT
1 AATTATATTAAAATATCATTAAT
* * *
50430841 ACATTTTATTAAAATAT-TTTTAT
1 A-ATTATATTAAAATATCATTAAT
50430864 AATTATATTAAAATATCATTA
1 AATTATATTAAAATATCATTA
50430885 TCAAAATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
22 15 0.43
23 19 0.54
24 1 0.03
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
AATTATATTAAAATATCATTAAT
Found at i:50430885 original size:22 final size:22
Alignment explanation
Indices: 50430812--50430885 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
50430802 ATAAATTTAT
50430812 TATCA-TA-AATTATATTAAAA
1 TATCATTATAATTATATTAAAA
*
50430832 T-TCATTAATACATTTTATTAAAA
1 TATCATT-ATA-ATTATATTAAAA
**
50430855 TATTTTTATAATTATATTAAAA
1 TATCATTATAATTATATTAAAA
50430877 TATCATTAT
1 TATCATTAT
50430886 CAAAATAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
19 3 0.07
20 2 0.05
21 1 0.02
22 19 0.44
23 15 0.35
24 3 0.07
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (22 bp):
TATCATTATAATTATATTAAAA
Found at i:50435821 original size:20 final size:21
Alignment explanation
Indices: 50435776--50435822 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
50435766 AACGGTATAT
*
50435776 AAATATATACATATATGTATTA
1 AAATATATACATATA-GTAATA
50435798 AAATATATACATA-A-TAATA
1 AAATATATACATATAGTAATA
50435817 GAAATA
1 -AAATA
50435823 AAAATGTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 4 0.17
20 5 0.22
21 1 0.04
22 13 0.57
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (21 bp):
AAATATATACATATAGTAATA
Found at i:50436160 original size:25 final size:23
Alignment explanation
Indices: 50436131--50436198 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
50436121 ATATTTACAT
50436131 AATATAAAAAATATATGAATAATA
1 AATATAAAAAATATATGAATAA-A
* * *
50436155 CGATATTAAAAATATATGCATAAA
1 -AATATAAAAAATATATGAATAAA
*
50436179 AATATAATAAATATAT-AATA
1 AATATAAAAAATATATGAATA
50436199 TATATATATA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
22 3 0.08
23 13 0.36
24 1 0.03
25 19 0.53
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (23 bp):
AATATAAAAAATATATGAATAAA
Found at i:50436207 original size:13 final size:12
Alignment explanation
Indices: 50436180--50436213 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
50436170 ATGCATAAAA
50436180 ATATAATA-AAT
1 ATATAATATAAT
50436191 ATATAATATATAT
1 ATATAATATA-AT
50436204 ATATAATATA
1 ATATAATATA
50436214 CATAATATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.38
12 1 0.05
13 12 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATAATATAAT
Found at i:50436212 original size:11 final size:11
Alignment explanation
Indices: 50436180--50436222 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
50436170 ATGCATAAAA
*
50436180 ATATAATAAAT
1 ATATAATATAT
50436191 ATATAATATAT
1 ATATAATATAT
50436202 ATAT-ATAATAT
1 ATATAAT-ATAT
*
50436213 ACATAATATA
1 ATATAATATA
50436223 GTTTTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 2 0.07
11 24 0.86
12 2 0.07
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (11 bp):
ATATAATATAT
Found at i:50436441 original size:12 final size:11
Alignment explanation
Indices: 50436401--50436468 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 11
50436391 TATAAGTGTA
*
50436401 ATAATAGTAATT
1 ATAATAATAA-T
*
50436413 ATAATACTAAT
1 ATAATAATAAT
50436424 ACTAATAATAGAT
1 A-TAATAATA-AT
*
50436437 ATAATAATAGT
1 ATAATAATAAT
*
50436448 AGTAAAAATAAT
1 A-TAATAATAAT
50436460 ATAAATAAT
1 AT-AATAAT
50436469 GTGTACATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
11 5 0.11
12 38 0.83
13 3 0.07
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (11 bp):
ATAATAATAAT
Found at i:50437924 original size:37 final size:35
Alignment explanation
Indices: 50437867--50437936 Score: 95
Period size: 37 Copynumber: 1.9 Consensus size: 35
50437857 CGTTGGTATT
* *
50437867 AATTTCATATTTTATCTTTAATATAATTTTATTAAAA
1 AATTACATATTTTATATTTAATAT-ATTTT-TTAAAA
*
50437904 AATTACATTTTTTATATTTAATATATTTTTTAA
1 AATTACATATTTTATATTTAATATATTTTTTAA
50437937 TTTCAAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 4 0.13
36 5 0.17
37 21 0.70
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (35 bp):
AATTACATATTTTATATTTAATATATTTTTTAAAA
Found at i:50445416 original size:17 final size:16
Alignment explanation
Indices: 50445397--50445439 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
50445387 TTTTTTGATT
50445397 TTTTTGTAAGATATTA
1 TTTTTGTAAGATATTA
*
50445413 TTTTTGTAAGGTATTA
1 TTTTTGTAAGATATTA
* *
50445429 GTTTTGCAAGA
1 TTTTTGTAAGA
50445440 AAGGAAAGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTTTGTAAGATATTA
Found at i:50450816 original size:13 final size:13
Alignment explanation
Indices: 50450798--50450822 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50450788 GAATTAGTAT
50450798 GTGTGAAAATTTC
1 GTGTGAAAATTTC
50450811 GTGTGAAAATTT
1 GTGTGAAAATTT
50450823 AATCGTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:50458162 original size:46 final size:46
Alignment explanation
Indices: 50458094--50458184 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
50458084 TATATATACA
* *
50458094 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* *
50458140 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
50458185 ATACACTTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:50458227 original size:22 final size:22
Alignment explanation
Indices: 50458201--50458276 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
50458191 TTCCACGTTC
50458201 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
50458223 ATCACATATATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
50458248 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
50458270 ATCACAT
1 ATCACAT
50458277 ATGTGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:50458232 original size:47 final size:47
Alignment explanation
Indices: 50458158--50458603 Score: 689
Period size: 47 Copynumber: 9.5 Consensus size: 47
50458148 ACACATTTCG
* * * * * * *
50458158 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATGTGCA-TGTTCACATTCATCA
* * *
50458205 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
*
50458252 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
* *
50458299 CACTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
* * * *
50458346 CATTGGTCATTCGGCCTTATCACACATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
50458393 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
50458440 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACA-TCATCA
1 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
* * *
50458486 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
50458533 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
50458580 CATTGGCCATTCGGCCTTATCACA
1 CATTGGCCATTCGGCCTTATCACA
50458604 CTGGCCATTC
Statistics
Matches: 369, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
46 45 0.12
47 324 0.88
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
Found at i:50458626 original size:22 final size:22
Alignment explanation
Indices: 50458527--50458626 Score: 96
Period size: 22 Copynumber: 4.4 Consensus size: 22
50458517 ATGTTCACAT
*
50458527 TTATCACATTGGCCATTCGGCC
1 TTATCACACTGGCCATTCGGCC
* * *
50458549 TTATCACATATGTG-CATGTTC-ACA
1 TTATCACA-CTG-GCCA--TTCGGCC
*
50458573 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACACTGGCCATTCGGCC
50458596 TTATCACACTGGCCATTCGGCC
1 TTATCACACTGGCCATTCGGCC
50458618 TTATCACAC
1 TTATCACAC
50458627 ATATGCATGT
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
22 39 0.61
23 8 0.12
24 8 0.12
25 9 0.14
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (22 bp):
TTATCACACTGGCCATTCGGCC
Found at i:50462569 original size:28 final size:28
Alignment explanation
Indices: 50462538--50462633 Score: 93
Period size: 28 Copynumber: 3.4 Consensus size: 28
50462528 CTGATTTCCA
50462538 ACACATAGTGCTCGATTAAAGAACTCGC
1 ACACATAGTGCTCGATTAAAGAACTCGC
* * ** * *
50462566 ACACATAGTGCCTCAACTACTGATCTGGC
1 ACACATAGTG-CTCGATTAAAGAACTCGC
* * *
50462595 ACACATAGTGCTCGGTTGAAGAACTTGC
1 ACACATAGTGCTCGATTAAAGAACTCGC
*
50462623 ACACACAGTGC
1 ACACATAGTGC
50462634 CTCATGATTC
Statistics
Matches: 52, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
28 30 0.58
29 22 0.42
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (28 bp):
ACACATAGTGCTCGATTAAAGAACTCGC
Found at i:50462710 original size:40 final size:40
Alignment explanation
Indices: 50462645--50463277 Score: 966
Period size: 40 Copynumber: 15.8 Consensus size: 40
50462635 TCATGATTCC
* *
50462645 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGTTATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
*
50462684 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
50462724 AGCACGAATGCTTTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * *
50462764 AGGACGAATGCTCTTCGGGACTTAGCCCAGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
50462804 AGCACGAATGCTCTTTGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * *
50462844 AGCACGAATGCTTTTCAGGACTT-GTCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAG-CCCGGATATATCACT
* *
50462884 AGCACGAATGCTTTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
50462924 AGCACGAATGCTCTTCGGGACTTAGGCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * *
50462964 AGCATGAATGCTCTTCGGGACTTAGGCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * *
50463004 AGCACGAATGCTCTTTGAGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
50463044 AGCACGAATGCTCTTCGGGACTTAGCCCGAATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
50463084 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
50463124 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
50463164 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
50463204 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
50463244 AGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
50463278 GATTCGAATA
Statistics
Matches: 555, Mismatches: 35, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
39 14 0.03
40 540 0.97
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:50465034 original size:46 final size:46
Alignment explanation
Indices: 50464981--50465071 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
50464971 TATATATACA
* *
50464981 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* *
50465027 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
50465072 ATACACTTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:50465114 original size:22 final size:21
Alignment explanation
Indices: 50465088--50465444 Score: 70
Period size: 22 Copynumber: 15.3 Consensus size: 21
50465078 TTCCACGTTC
50465088 ATCACATTGGCAATTCTGCCTT
1 ATCACATTGGCAATTC-GCCTT
* * * *
50465110 ATCACATATATGCATGTTCACATTT
1 ATCACAT-T-GGCA-ATTCGC-CTT
*
50465135 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCAATTC-GCCTT
* * *
50465157 ATCACATATGTGCATGTTCACATTT
1 ATCACAT-TG-GCA-ATTCGC-CTT
*
50465182 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCAATTC-GCCTT
* * *
50465204 ATCACATATGTGCATGTTCACATT
1 ATCACAT-TG-GCA-ATTCGCCTT
* *
50465228 CATTACATTGGCCATTCGGCCTT
1 -ATCACATTGGCAATTC-GCCTT
* * *
50465251 ATCACACATAT-GCATGTTCACATTT
1 AT--CACAT-TGGCA-ATTCGC-CTT
* *
50465276 ATCACAATGGCCATTCGGCCTT
1 ATCACATTGGCAATTC-GCCTT
* * *
50465298 ATCACATATGTGCATGTTCACATT
1 ATCACAT-TG-GCA-ATTCGCCTT
*
50465322 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCAATTC-GCCTT
* * *
50465345 ATCACACATAT-GCATGTTCACATTT
1 AT--CACAT-TGGCA-ATTCGC-CTT
*
50465370 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCAATTC-GCCTT
* * *
50465392 ATCACATATGTGCATGTTCACATT
1 ATCACAT-TG-GCA-ATTCGCCTT
* *
50465416 CATCACGTTGGCCATTCGGCCTT
1 -ATCACATTGGCAATTC-GCCTT
50465439 ATCACA
1 ATCACA
50465445 CATATGCATG
Statistics
Matches: 233, Mismatches: 63, Indels: 78
0.62 0.17 0.21
Matches are distributed among these distances:
22 74 0.32
23 45 0.19
24 46 0.20
25 68 0.29
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (21 bp):
ATCACATTGGCAATTCGCCTT
Found at i:50465139 original size:47 final size:47
Alignment explanation
Indices: 50465045--50465471 Score: 631
Period size: 47 Copynumber: 9.1 Consensus size: 47
50465035 ACACATTTCG
* * * * * *
50465045 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* * *
50465092 CATTGGCAATTCTGCCTTATCACATATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50465139 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50465186 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATTA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50465233 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50465280 CAATGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50465327 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50465374 CATTGGCCATTCAGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50465421 CGTTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
50465468 CATT
1 CATT
50465472 TGCCTTGGCT
Statistics
Matches: 344, Mismatches: 35, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 343 1.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:50469363 original size:28 final size:27
Alignment explanation
Indices: 50469332--50469421 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 27
50469322 TCGCATACGC
*
50469332 AGTGCCCACTGACTGATTTCGCACACAT
1 AGTGCCCACT-ACTGATCTCGCACACAT
* * ** *
50469360 AGTGCTCGATTAAAGAACTCGCACACAT
1 AGTGC-CCACTACTGATCTCGCACACAT
*
50469388 AGTGCCTCAACTACTGATCTGGCACACAT
1 AGTGCC-C-ACTACTGATCTCGCACACAT
50469417 AGTGC
1 AGTGC
50469422 TCGGTTGAAG
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
27 1 0.02
28 23 0.49
29 23 0.49
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (27 bp):
AGTGCCCACTACTGATCTCGCACACAT
Found at i:50469413 original size:57 final size:57
Alignment explanation
Indices: 50469322--50469453 Score: 169
Period size: 57 Copynumber: 2.3 Consensus size: 57
50469312 GAAACACACT
* * *
50469322 TCGCATACGCAGTGCC-C-ACTGACTGATTTCGCACACATAGTGCTCGATTAAAGAAC
1 TCGCACACACAGTGCCTCAACT-ACTGATCTCGCACACATAGTGCTCGATTAAAGAAC
* * * *
50469378 TCGCACACATAGTGCCTCAACTACTGATCTGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCGATTAAAGAAC
*
50469435 TTGCACACACAGTGCCTCA
1 TCGCACACACAGTGCCTCA
50469454 TGATTCCAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 13 0.20
57 49 0.75
58 3 0.05
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (57 bp):
TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCGATTAAAGAAC
Found at i:50469541 original size:40 final size:40
Alignment explanation
Indices: 50469481--50469922 Score: 562
Period size: 40 Copynumber: 11.4 Consensus size: 40
50469471 CCTTCGAGGT
* *
50469481 TTAGCCCGGTTATATCACTAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
*
50469521 TTAGCCCGGATACATTACTAGCACGAATGCT-TTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTT-GGGAC
*
50469561 --AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
* *
50469599 TTAGCCCGGATACATCACTAGCATG-ATGCT-TTTCGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
*
50469637 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
* *
50469677 TTAGCCCAGATATATCAC-A-CACGAA-GC-C--T---AC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
50469708 -TAG--CGGATACATCACTAGCACGAATGCT-TTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTT-GGGAC
*
50469745 TT-GTCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAG-CCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
*
50469785 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
* * *
50469825 TTAGCCCGGATATATCACCAGCACGAATGGTCTTTGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
* * * *
50469865 TTAGCCCGGATATATCACCAGCACGAATGCTCTTCGAGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
50469905 TTAGCCCGGATACATCAC
1 TTAGCCCGGATACATCAC
50469923 CACTTAGCCC
Statistics
Matches: 355, Mismatches: 25, Indels: 44
0.84 0.06 0.10
Matches are distributed among these distances:
28 10 0.03
29 1 0.00
30 9 0.03
31 4 0.01
33 1 0.00
36 1 0.00
37 5 0.01
38 70 0.20
39 16 0.05
40 235 0.66
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGAC
Found at i:50469929 original size:21 final size:21
Alignment explanation
Indices: 50469903--50469945 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
50469893 GCTCTTCGAG
50469903 ACTTAGCCCGGATACATCACC
1 ACTTAGCCCGGATACATCACC
50469924 ACTTAGCCCGGATACATCACC
1 ACTTAGCCCGGATACATCACC
50469945 A
1 A
50469946 GCACGAATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.37, G:0.14, T:0.19
Consensus pattern (21 bp):
ACTTAGCCCGGATACATCACC
Found at i:50469958 original size:61 final size:61
Alignment explanation
Indices: 50469863--50469983 Score: 224
Period size: 61 Copynumber: 2.0 Consensus size: 61
50469853 GGTCTTTGGG
*
50469863 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
*
50469924 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCAC
50469984 TAGCACGAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (61 bp):
ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
Found at i:50469989 original size:181 final size:182
Alignment explanation
Indices: 50469561--50470097 Score: 755
Period size: 181 Copynumber: 2.9 Consensus size: 182
50469551 TTTTCGGGAC
*
50469561 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATG-A
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * *
50469625 TGCTTTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATA
66 TGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTGGGACTTAGCCCGGATA
* * * * * * ***
50469689 TATCA-CA-CACGAA-GCCTACTAGCGGATACATCACTAGCACGAATGCTTTTCGGGACTT
131 TATCACCAGCACGAATG-CT-CT-TC-GAGAC-T---TAGCCCGGATAC-TATCACCACTT
50469747 -GTCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGA
1 AG-CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGA
*
50469811 ATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGGTCTTTGGGACTTAGCCCGGAT
65 ATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTGGGACTTAGCCCGGAT
50469876 ATATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATAC-ATCACCACTT
130 ATATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACTATCACCACTT
*
50469928 AGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50469993 TGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTTGGACTTAGCCCGGATA
66 TGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTGGGACTTAGCCCGGATA
* *
50470058 TATCACCAGCACGAATGCTCTTCGGGGCTTAGCCCGGATA
131 TATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATA
50470098 TCATTCGAAT
Statistics
Matches: 323, Mismatches: 21, Indels: 19
0.89 0.06 0.05
Matches are distributed among these distances:
181 169 0.52
182 1 0.00
183 9 0.03
185 1 0.00
186 61 0.19
187 12 0.04
188 57 0.18
189 4 0.01
190 8 0.02
191 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (182 bp):
AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
TGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTGGGACTTAGCCCGGATA
TATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACTATCACCACTT
Found at i:50469998 original size:101 final size:101
Alignment explanation
Indices: 50469823--50470025 Score: 343
Period size: 101 Copynumber: 2.0 Consensus size: 101
50469813 GCTCTTCGGG
* * * *
50469823 ACTTAGCCCGGATATATCACCAGCACGAATGGTCTTTGGGACTTAGCCCGGATATATCACCAGCA
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
50469888 CGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
66 CGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
*
50469924 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
* *
50469989 CGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
66 CGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
50470025 A
1 A
50470026 GCACGAATGC
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 95 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.22
Consensus pattern (101 bp):
ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
CGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
Found at i:50470037 original size:141 final size:141
Alignment explanation
Indices: 50469783--50470065 Score: 487
Period size: 141 Copynumber: 2.0 Consensus size: 141
50469773 GCTCTTCGGG
* *
50469783 ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCA
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
* *
50469848 CGAATGGTCTTTGGGACTTAGCCCGGATATATCACCAGCACGAATGCTC-TTCGAGACTTAGCCC
66 CGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTCG-GACTTAGCCC
50469912 GGATACATCACC
130 GGATACATCACC
*
50469924 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
*
50469989 CGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTTGGACTTAGCCCG
66 CGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTCGGACTTAGCCCG
*
50470054 GATATATCACC
131 GATACATCACC
50470065 A
1 A
50470066 GCACGAATGC
Statistics
Matches: 134, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 131 0.98
142 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (141 bp):
ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
CGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTCGGACTTAGCCCG
GATACATCACC
Found at i:50470098 original size:40 final size:40
Alignment explanation
Indices: 50469924--50470098 Score: 296
Period size: 40 Copynumber: 4.4 Consensus size: 40
50469914 ATACATCACC
*
50469924 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGG
1 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
* *
50469964 ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGG
1 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
**
50470004 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTTGG
1 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
50470044 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
1 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
*
50470084 GCTTAGCCCGGATAT
1 ACTTAGCCCGGATAT
50470099 CATTCGAATA
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
Found at i:50471873 original size:45 final size:46
Alignment explanation
Indices: 50471792--50471881 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 46
50471782 TATATATACA
* * *
50471792 CATCTCATACATATCTCACATTAGCCATTTGCCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCAATCGCCTTTACCACATATC
** *
50471838 CATCTCATACACAT-TTGCATTAGCCAATCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCAATCGCCTTTACCACATAT
50471882 ATACACTTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
45 25 0.66
46 13 0.34
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCAATCGCCTTTACCACATATC
Found at i:50471949 original size:47 final size:47
Alignment explanation
Indices: 50471898--50472186 Score: 442
Period size: 47 Copynumber: 6.2 Consensus size: 47
50471888 TTCCACGCTC
*
50471898 ATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTT
1 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTT
*
50471945 ATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTT
1 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTT
* *
50471992 ATCACATTGG-CATTCGGCCTTATCACATATGTGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTT
*
50472038 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTT
1 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTT
* * *
50472085 ATCACATTAGCCATTCGGCCTTATCACATATGTGCATGTTCACA-TC
1 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTT
*
50472131 ATCACATTGGCCATTC-GCCTTCACATCACACATATGCATGTTCACA-TT
1 ATCACATTGGCCATTCGGCCTT---ATCACATATATGCATGTTCACATTT
50472179 ATCACATT
1 ATCACATT
50472187 TGCCTTGGCT
Statistics
Matches: 224, Mismatches: 14, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
45 5 0.02
46 61 0.27
47 129 0.58
48 29 0.13
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTT
Found at i:50472019 original size:140 final size:140
Alignment explanation
Indices: 50471855--50472186 Score: 438
Period size: 140 Copynumber: 2.4 Consensus size: 140
50471845 TACACATTTG
* * * * *
50471855 CATTAGCCAATCGGCTTTACCACATATATACACT-TCCACGCTCATCACATTGGCCATTCTGCCT
1 CATTGGCCATTCGGCCTTACCACATATATACA-TGTCCACACTCATCACATTGGCCATTCGGCCT
* *
50471919 TATCACATATATGCATGTTCACATTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGT
65 TATCACACATATGCATGTTCACATTTATCACATTAGCCATTCGGCCTTATCACATATGTGCATGT
*
50471984 TCACATTTATCA
130 TCACA-TCATCA
* * * * *
50471996 CATTGG-CATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTCCACACTCATCACATTGGCCATTCGGCCTT
50472060 ATCACACATATGCATGTTCACATTTATCACATTAGCCATTCGGCCTTATCACATATGTGCATGTT
66 ATCACACATATGCATGTTCACATTTATCACATTAGCCATTCGGCCTTATCACATATGTGCATGTT
50472125 CACATCATCA
131 CACATCATCA
* * * *
50472135 CATTGGCCATTC-GCCTTCACATCACACATATGCATGTTCACA-TTATCACATT
1 CATTGGCCATTCGGCCTT-AC--CACATATATACATGTCCACACTCATCACATT
50472187 TGCCTTGGCT
Statistics
Matches: 169, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
139 17 0.10
140 120 0.71
141 14 0.08
142 18 0.11
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (140 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTCCACACTCATCACATTGGCCATTCGGCCTT
ATCACACATATGCATGTTCACATTTATCACATTAGCCATTCGGCCTTATCACATATGTGCATGTT
CACATCATCA
Found at i:50472027 original size:93 final size:93
Alignment explanation
Indices: 50471898--50472186 Score: 458
Period size: 93 Copynumber: 3.1 Consensus size: 93
50471888 TTCCACGCTC
* * *
50471898 ATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTTATCACATTGGCCATTCGG
1 ATCACATTGG-CATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGG
* *
50471963 CCTTATCACATATGTGCATGTTCACATTT
65 CCTTATCACACATATGCATGTTCACATTT
50471992 ATCACATTGGCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGC
1 ATCACATTGGCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGC
50472057 CTTATCACACATATGCATGTTCACATTT
66 CTTATCACACATATGCATGTTCACATTT
*
50472085 ATCACATTAGCCATTCGGCCTTATCACATATGTGCATGTTCACA-TCATCACATTGGCCATTC-G
1 ATCACATT-GGCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGG
50472148 CCTTCACATCACACATATGCATGTTCACA-TT
65 CCTT---ATCACACATATGCATGTTCACATTT
50472179 ATCACATT
1 ATCACATT
50472187 TGCCTTGGCT
Statistics
Matches: 185, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
92 5 0.03
93 104 0.56
94 54 0.29
95 22 0.12
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (93 bp):
ATCACATTGGCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACACATATGCATGTTCACATTT
Found at i:50472136 original size:24 final size:24
Alignment explanation
Indices: 50472107--50472185 Score: 69
Period size: 24 Copynumber: 3.3 Consensus size: 24
50472097 ATTCGGCCTT
50472107 ATCACATATGTGCATGTTCACATC
1 ATCACATATGTGCATGTTCACATC
50472131 ATCACAT-TG-GCCATTCGCCTTCACATC
1 ATCACATATGTG-CA-T-G--TTCACATC
*
50472158 A-CACATA--TGCATGTTCACATT
1 ATCACATATGTGCATGTTCACATC
50472179 ATCACAT
1 ATCACAT
50472186 TTGCCTTGGC
Statistics
Matches: 46, Mismatches: 1, Indels: 18
0.71 0.02 0.28
Matches are distributed among these distances:
21 8 0.17
22 6 0.13
23 5 0.11
24 9 0.20
25 3 0.07
26 6 0.13
27 9 0.20
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (24 bp):
ATCACATATGTGCATGTTCACATC
Found at i:50476039 original size:28 final size:28
Alignment explanation
Indices: 50476008--50476103 Score: 93
Period size: 28 Copynumber: 3.4 Consensus size: 28
50475998 CTGATTTCCA
50476008 ACACATAGTGCTCGATTAAAGAACTCGC
1 ACACATAGTGCTCGATTAAAGAACTCGC
* * ** * *
50476036 ACACATAGTGCCTCAACTACTGATCTGGC
1 ACACATAGTG-CTCGATTAAAGAACTCGC
* * *
50476065 ACACATAGTGCTCGGTTGAAGAACTTGC
1 ACACATAGTGCTCGATTAAAGAACTCGC
*
50476093 ACACACAGTGC
1 ACACATAGTGC
50476104 CTCATGATTC
Statistics
Matches: 52, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
28 30 0.58
29 22 0.42
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (28 bp):
ACACATAGTGCTCGATTAAAGAACTCGC
Found at i:50476180 original size:40 final size:40
Alignment explanation
Indices: 50476115--50476692 Score: 739
Period size: 40 Copynumber: 14.8 Consensus size: 40
50476105 TCATGATTCC
* * *
50476115 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGTTATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATACATCACT
50476154 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
50476194 AGCACGAATGCTTTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* * * *
50476234 AGGACGAATGCTCTTCGGGACTTAGCCCAGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
50476274 AGCACGAATGCTCTTTGGGACTTAG-CCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* *
50476313 AGCACGAATGCTTTTCAGGACTT-GTCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAG-CCCGGATACATCACT
*
50476353 AGCACGAATGCTTTTC-GGACTTAG-CCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* * *
50476391 AGCACGAATGCTCTTCGGGATTTAGGCCGGCACGATATATC-C-
1 AGCACGAATGCTCTTCGGGACTTA-GCC--C-GGATACATCACT
* *
50476433 A-CACGAA-GCTCTT-----C--AGCCC-GATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* * *
50476463 AGCACGAATGCTCTT--GGACTTAGCCCGAATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
50476501 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
50476541 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* *
50476581 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* *
50476621 AGCACGAATGCTCTTC-GGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
50476660 AGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATA
50476693 TGATTCGAAT
Statistics
Matches: 487, Mismatches: 28, Indels: 47
0.87 0.05 0.08
Matches are distributed among these distances:
28 8 0.02
29 1 0.00
30 2 0.00
31 6 0.01
32 9 0.02
33 1 0.00
35 1 0.00
37 5 0.01
38 55 0.11
39 95 0.20
40 287 0.59
41 7 0.01
42 1 0.00
43 2 0.00
44 7 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
Found at i:50476505 original size:110 final size:114
Alignment explanation
Indices: 50476115--50476674 Score: 622
Period size: 119 Copynumber: 4.8 Consensus size: 114
50476105 TCATGATTCC
** * *
50476115 AGCACGAATGC-CTTCGAGGTTTAGCCCGGTTATATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTTCG-GACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAG
* *
50476179 CCCGGATACATCACTAGCACGAATGCTTTTCGGGACTTAGCCCGGATACATCACT
65 CCCCGATACATCACTAGCACGAATGCTCTT---G-C-TAGCCCGGATACATCACT
* * *
50476234 AGGACGAATGCTCTTCGGGACTTAGCCCAGATATATCACCAGCACGAATGCTCTTTGGGACTTAG
1 AGCACGAATGCTCTTC-GGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAG
* * *
50476299 -CCGGATACATCACTAGCACGAATGCTTTTCAGGACTTGTCCCGGATACATCACT
65 CCCCGATACATCACTAGCACGAATGCTCTT---G-CTAG-CCCGGATACATCACT
* * * *
50476353 AGCACGAATGCTTTTCGGACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGG
1 AGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTA-G
* * *
50476417 CCGGCACGATATATC-C-A-CACGAA-GCTCTT-C-AGCCC-GATATATCACC
65 CC--C-CGATACATCACTAGCACGAATGCTCTTGCTAGCCCGGATACATCACT
*
50476463 AGCACGAATGCTCTT-GGACTTAGCCCGAATATATCACCAGCACGAATGCTCTTCGGGACTTAGC
1 AGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAGC
*
50476527 CCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
66 CCCGATACATCACTAGCACGAATGCTCTT---G-C-TAGCCCGGATACATCACT
50476581 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTC-GGACTTAG
1 AGCACGAATGCTCTTC-GGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAG
* * *
50476645 CCCGGATATATCACCAGCACGAATGCTCTT
65 CCCCGATACATCACTAGCACGAATGCTCTT
50476675 CGGGACTTAG
Statistics
Matches: 384, Mismatches: 34, Indels: 46
0.83 0.07 0.10
Matches are distributed among these distances:
106 7 0.02
107 2 0.01
108 1 0.00
109 17 0.04
110 63 0.16
111 3 0.01
112 1 0.00
113 1 0.00
115 1 0.00
117 38 0.10
118 40 0.10
119 116 0.30
120 84 0.22
121 3 0.01
122 7 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (114 bp):
AGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGGACTTAGC
CCCGATACATCACTAGCACGAATGCTCTTGCTAGCCCGGATACATCACT
Found at i:50478426 original size:46 final size:46
Alignment explanation
Indices: 50478373--50478463 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
50478363 TATATATACA
* *
50478373 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* *
50478419 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
50478464 ATACACTTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:50478506 original size:22 final size:21
Alignment explanation
Indices: 50478480--50478836 Score: 70
Period size: 22 Copynumber: 15.3 Consensus size: 21
50478470 TTCCACGTTC
50478480 ATCACATTGGCAATTCTGCCTT
1 ATCACATTGGCAATTC-GCCTT
* * * *
50478502 ATCACATATATGCATGTTCACATTT
1 ATCACAT-T-GGCA-ATTCGC-CTT
*
50478527 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCAATTC-GCCTT
* * *
50478549 ATCACATATGTGCATGTTCACATTT
1 ATCACAT-TG-GCA-ATTCGC-CTT
*
50478574 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCAATTC-GCCTT
* * *
50478596 ATCACATATGTGCATGTTCACATT
1 ATCACAT-TG-GCA-ATTCGCCTT
* *
50478620 CATTACATTGGCCATTCGGCCTT
1 -ATCACATTGGCAATTC-GCCTT
* * *
50478643 ATCACACATAT-GCATGTTCACATTT
1 AT--CACAT-TGGCA-ATTCGC-CTT
* *
50478668 ATCACAATGGCCATTCGGCCTT
1 ATCACATTGGCAATTC-GCCTT
* * *
50478690 ATCACATATGTGCATGTTCACATT
1 ATCACAT-TG-GCA-ATTCGCCTT
*
50478714 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCAATTC-GCCTT
* * *
50478737 ATCACACATAT-GCATGTTCACATTT
1 AT--CACAT-TGGCA-ATTCGC-CTT
*
50478762 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCAATTC-GCCTT
* * *
50478784 ATCACATATGTGCATGTTCACATT
1 ATCACAT-TG-GCA-ATTCGCCTT
* *
50478808 CATCACGTTGGCCATTCGGCCTT
1 -ATCACATTGGCAATTC-GCCTT
50478831 ATCACA
1 ATCACA
50478837 CATATGCATG
Statistics
Matches: 233, Mismatches: 63, Indels: 78
0.62 0.17 0.21
Matches are distributed among these distances:
22 74 0.32
23 45 0.19
24 46 0.20
25 68 0.29
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (21 bp):
ATCACATTGGCAATTCGCCTT
Done.