Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 161 of 295
Found at i:50478531 original size:47 final size:47
Alignment explanation
Indices: 50478437--50478863 Score: 631
Period size: 47 Copynumber: 9.1 Consensus size: 47
50478427 ACACATTTCG
* * * * * *
50478437 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* * *
50478484 CATTGGCAATTCTGCCTTATCACATATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50478531 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50478578 CATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATTA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50478625 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50478672 CAATGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50478719 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50478766 CATTGGCCATTCAGCCTTATCACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50478813 CGTTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
50478860 CATT
1 CATT
50478864 TGCCTTGGCT
Statistics
Matches: 344, Mismatches: 35, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 343 1.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:50482738 original size:28 final size:27
Alignment explanation
Indices: 50482707--50482796 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 27
50482697 TCGCATACGC
*
50482707 AGTGCCCACTGACTGATTTCGCACACAT
1 AGTGCCCACT-ACTGATCTCGCACACAT
* * ** *
50482735 AGTGCTCGATTAAAGAACTCGCACACAT
1 AGTGC-CCACTACTGATCTCGCACACAT
*
50482763 AGTGCCTCAACTACTGATCTGGCACACAT
1 AGTGCC-C-ACTACTGATCTCGCACACAT
50482792 AGTGC
1 AGTGC
50482797 TCGGTTGAAG
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
27 1 0.02
28 23 0.49
29 23 0.49
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (27 bp):
AGTGCCCACTACTGATCTCGCACACAT
Found at i:50482788 original size:57 final size:57
Alignment explanation
Indices: 50482697--50482828 Score: 169
Period size: 57 Copynumber: 2.3 Consensus size: 57
50482687 GAAACACACT
* * *
50482697 TCGCATACGCAGTGCC-C-ACTGACTGATTTCGCACACATAGTGCTCGATTAAAGAAC
1 TCGCACACACAGTGCCTCAACT-ACTGATCTCGCACACATAGTGCTCGATTAAAGAAC
* * * *
50482753 TCGCACACATAGTGCCTCAACTACTGATCTGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCGATTAAAGAAC
*
50482810 TTGCACACACAGTGCCTCA
1 TCGCACACACAGTGCCTCA
50482829 TGATTCCAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 13 0.20
57 49 0.75
58 3 0.05
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (57 bp):
TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCGATTAAAGAAC
Found at i:50483313 original size:40 final size:40
Alignment explanation
Indices: 50482836--50483311 Score: 719
Period size: 40 Copynumber: 12.0 Consensus size: 40
50482826 TCATGATTCC
* * *
50482836 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGTTATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATACATCACT
* *
50482875 AGCACGAATGCTCTTTGGGACTTAGCCCGGATACATTACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
50482915 AGCACGAATGCTTTTCGGGAC--AGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
50482953 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* *
50482993 AGCATGAATGCTTTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* * *
50483033 AGCACGAATGCTCTTCGGGACTTAGCCCAGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
50483073 AGCACGAATGCTCTTTGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
50483113 AGCACGAATGCTTTTCGGGACTT-GTCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAG-CCCGGATACATCACT
50483153 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* *
50483193 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* * * *
50483233 AGCACGAATGGTCTTTGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
50483273 AGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCAC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
50483312 CACTTAGCCC
Statistics
Matches: 400, Mismatches: 31, Indels: 11
0.90 0.07 0.02
Matches are distributed among these distances:
38 36 0.09
39 14 0.04
40 349 0.87
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
Found at i:50483318 original size:21 final size:21
Alignment explanation
Indices: 50483292--50483334 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
50483282 GCTCTTCGAG
50483292 ACTTAGCCCGGATACATCACC
1 ACTTAGCCCGGATACATCACC
50483313 ACTTAGCCCGGATACATCACC
1 ACTTAGCCCGGATACATCACC
50483334 A
1 A
50483335 GCACGAATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.37, G:0.14, T:0.19
Consensus pattern (21 bp):
ACTTAGCCCGGATACATCACC
Found at i:50483347 original size:61 final size:61
Alignment explanation
Indices: 50483252--50483372 Score: 224
Period size: 61 Copynumber: 2.0 Consensus size: 61
50483242 GGTCTTTGGG
*
50483252 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
*
50483313 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCAC
50483373 TAGCACGAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (61 bp):
ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
Found at i:50483387 original size:101 final size:101
Alignment explanation
Indices: 50483212--50483414 Score: 343
Period size: 101 Copynumber: 2.0 Consensus size: 101
50483202 GCTCTTCGGG
* * * *
50483212 ACTTAGCCCGGATATATCACCAGCACGAATGGTCTTTGGGACTTAGCCCGGATATATCACCAGCA
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
50483277 CGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
66 CGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
*
50483313 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
* *
50483378 CGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
66 CGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
50483414 A
1 A
50483415 GCACGAATGC
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 95 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.22
Consensus pattern (101 bp):
ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
CGAATGCTCTTCGAGACTTAGCCCGGATACATCACC
Found at i:50483426 original size:141 final size:141
Alignment explanation
Indices: 50483172--50483454 Score: 487
Period size: 141 Copynumber: 2.0 Consensus size: 141
50483162 GCTCTTCGGG
* *
50483172 ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCA
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
* *
50483237 CGAATGGTCTTTGGGACTTAGCCCGGATATATCACCAGCACGAATGCTC-TTCGAGACTTAGCCC
66 CGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTCG-GACTTAGCCC
50483301 GGATACATCACC
130 GGATACATCACC
*
50483313 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA
1 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
*
50483378 CGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTTGGACTTAGCCCG
66 CGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTCGGACTTAGCCCG
*
50483443 GATATATCACC
131 GATACATCACC
50483454 A
1 A
50483455 GCACGAATGC
Statistics
Matches: 134, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 131 0.98
142 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (141 bp):
ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCA
CGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTCGGACTTAGCCCG
GATACATCACC
Found at i:50483442 original size:181 final size:181
Alignment explanation
Indices: 50483138--50483486 Score: 653
Period size: 181 Copynumber: 1.9 Consensus size: 181
50483128 CGGGACTTGT
*
50483138 CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
1 CCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
50483203 CTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGGTCTTTGGGACTTAGCCCGGATATA
66 CTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTGGGACTTAGCCCGGATATA
50483268 TCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACCACTTAG
131 TCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACCACTTAG
50483319 CCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
1 CCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
50483384 CTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTTGGACTTAGCCCGGATATA
66 CTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTGGGACTTAGCCCGGATATA
* *
50483449 TCACCAGCACGAATGCTCTTCGGGGCTTAGCCCGGATA
131 TCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATA
50483487 TCATTCGAAT
Statistics
Matches: 163, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
181 163 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (181 bp):
CCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
CTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTGGGACTTAGCCCGGATATA
TCACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACCACTTAG
Found at i:50483487 original size:40 final size:40
Alignment explanation
Indices: 50483313--50483487 Score: 296
Period size: 40 Copynumber: 4.4 Consensus size: 40
50483303 ATACATCACC
*
50483313 ACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGG
1 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
* *
50483353 ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGG
1 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
**
50483393 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTTTGG
1 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
50483433 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
1 ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
*
50483473 GCTTAGCCCGGATAT
1 ACTTAGCCCGGATAT
50483488 CATTCGAATA
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGG
Found at i:50485243 original size:46 final size:46
Alignment explanation
Indices: 50485191--50485281 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
50485181 TATATATACA
* * *
50485191 CATCTCATACATATCTCACATTAGCCATTTGCCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCAATCGCCTTTACCACATATC
* ** *
50485237 CATCTCATACACATTTTGCATTAGCCAATCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCAATCGCCTTTACCACATAT
50485282 ATACACTTCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCAATCGCCTTTACCACATATC
Found at i:50485324 original size:22 final size:22
Alignment explanation
Indices: 50485298--50485417 Score: 63
Period size: 22 Copynumber: 5.2 Consensus size: 22
50485288 TTCCACGCTC
50485298 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
50485320 ATCACATATATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
50485345 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
50485367 ATCACATATGTG-CATGT-T-CACATTT
1 ATCACAT-TG-GCCAT-TCTGC-C--TT
*
50485392 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
50485414 ATCA
1 ATCA
50485418 TATCACATAT
Statistics
Matches: 75, Mismatches: 5, Indels: 36
0.65 0.04 0.31
Matches are distributed among these distances:
22 24 0.32
23 16 0.21
24 15 0.20
25 20 0.27
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:50485349 original size:47 final size:47
Alignment explanation
Indices: 50485298--50485417 Score: 222
Period size: 47 Copynumber: 2.6 Consensus size: 47
50485288 TTCCACGCTC
*
50485298 ATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTT
1 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTT
*
50485345 ATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTT
1 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTT
50485392 ATCACATTGGCCATTCGGCCTTATCA
1 ATCACATTGGCCATTCGGCCTTATCA
50485418 TATCACATAT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.36
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTT
Found at i:50485472 original size:25 final size:25
Alignment explanation
Indices: 50485444--50485522 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
50485434 ATTCGGCCTT
50485444 ATCACATATGTGCATGTTCACATTC
1 ATCACATATGTGCATGTTCACATTC
* *
50485469 ATCACAT-TG-GCCA--TTCGGCCTT-
1 ATCACATATGTG-CATGTTC-ACATTC
* *
50485491 ATCACACATATGCATGTTCACATTC
1 ATCACATATGTGCATGTTCACATTC
50485516 ATCACAT
1 ATCACAT
50485523 TTGCCTTGGC
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 8 0.20
25 16 0.40
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (25 bp):
ATCACATATGTGCATGTTCACATTC
Found at i:50485491 original size:47 final size:47
Alignment explanation
Indices: 50485431--50485523 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
50485421 CACATATCAT
* *
50485431 GCCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG
50485478 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATT
1 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATT
50485524 TGCCTTGGCT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG
Found at i:50491528 original size:33 final size:33
Alignment explanation
Indices: 50491486--50491552 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
50491476 TTATATTGTC
*
50491486 ATTGGTTAGCTAGTGTAAGGGCTTGAATGATAT
1 ATTGGTTAGCCAGTGTAAGGGCTTGAATGATAT
50491519 ATTGGTTAGCCAGTGTAAGGGCTTGAATGATAT
1 ATTGGTTAGCCAGTGTAAGGGCTTGAATGATAT
50491552 A
1 A
50491553 CCTTTTCATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.28, C:0.07, G:0.30, T:0.34
Consensus pattern (33 bp):
ATTGGTTAGCCAGTGTAAGGGCTTGAATGATAT
Found at i:50498769 original size:29 final size:29
Alignment explanation
Indices: 50498734--50498807 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
50498724 GTTGTGAGAT
* *
50498734 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
50498763 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
*
50498792 TGGCACTAAGTATGCG
1 TGGCACTAAGTGTGCG
50498808 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:50506024 original size:47 final size:47
Alignment explanation
Indices: 50505945--50506257 Score: 518
Period size: 47 Copynumber: 6.6 Consensus size: 47
50505935 TATTTGAATA
50505945 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
50505994 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50506041 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50506088 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
50506137 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
50506184 AATGTGAAAGTATATATATGTGACAGGGCCGAGTGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
50506231 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
50506258 TCCCGAAGGG
Statistics
Matches: 251, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 192 0.76
49 59 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50506057 original size:96 final size:94
Alignment explanation
Indices: 50505945--50506257 Score: 518
Period size: 96 Copynumber: 3.3 Consensus size: 94
50505935 TATTTGAATA
50505945 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
50506010 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
50506041 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
50506106 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
50506137 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * *
50506202 TGTGACAGGGCCGAGTGGCCAATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
50506231 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
50506258 TCCCGAAGGG
Statistics
Matches: 207, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
94 102 0.49
96 105 0.51
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50506109 original size:143 final size:143
Alignment explanation
Indices: 50505945--50506257 Score: 549
Period size: 143 Copynumber: 2.2 Consensus size: 143
50505935 TATTTGAATA
50505945 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
50506010 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGACAAGGCCGAAT
*
50506075 GGCCGATGTGATG
131 GGCCAATGTGATG
50506088 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
50506153 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGACAGGGCCGAGT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGACAAGGCCGAAT
50506218 GGCCAATGTGATG
131 GGCCAATGTGATG
*
50506231 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
50506258 TCCCGAAGGG
Statistics
Matches: 163, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
141 10 0.06
142 1 0.01
143 152 0.93
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGACAAGGCCGAAT
GGCCAATGTGATG
Found at i:50509065 original size:29 final size:29
Alignment explanation
Indices: 50509030--50509103 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
50509020 GTTGTGAGAT
* *
50509030 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
50509059 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
50509088 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50509104 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:50521941 original size:10 final size:10
Alignment explanation
Indices: 50521928--50521952 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
50521918 ATATGTGTAA
50521928 AAATGTGAAT
1 AAATGTGAAT
50521938 AAATGTGAAT
1 AAATGTGAAT
50521948 AAATG
1 AAATG
50521953 AAAAATGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.20, T:0.28
Consensus pattern (10 bp):
AAATGTGAAT
Found at i:50528739 original size:14 final size:14
Alignment explanation
Indices: 50528720--50528750 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
50528710 TAATTGATTT
50528720 TTTAATTAAATAAA
1 TTTAATTAAATAAA
*
50528734 TTTAATTAATTAAA
1 TTTAATTAAATAAA
50528748 TTT
1 TTT
50528751 TCTAAATTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAATTAAATAAA
Found at i:50529233 original size:3 final size:3
Alignment explanation
Indices: 50529225--50529323 Score: 134
Period size: 3 Copynumber: 33.7 Consensus size: 3
50529215 GTAAGTCCAT
*
50529225 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
50529273 TTC TTC TTC TTC TTC TTC TTC TT- TATC TGTC TAC -TC TTC -TC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC T-TC T-TC TTC TTC TTC TTC TTC
50529317 -TC TTC TT
1 TTC TTC TT
50529324 TGATGGTAAC
Statistics
Matches: 86, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
2 6 0.07
3 76 0.88
4 4 0.05
ACGTcount: A:0.02, C:0.31, G:0.01, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:50533585 original size:5 final size:5
Alignment explanation
Indices: 50533575--50533624 Score: 84
Period size: 5 Copynumber: 10.0 Consensus size: 5
50533565 AATTTGTGTG
50533575 TTATT TTATT TT-TCT TTATT TTATT TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TTATT TTATT TTATT
50533625 CACAAATTGG
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
4 1 0.02
5 41 0.95
6 1 0.02
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:50538052 original size:5 final size:5
Alignment explanation
Indices: 50538042--50538079 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
50538032 AATTTGTGTG
*
50538042 TTATT TTATT TTTTCT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TT
50538080 TTTCACAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTATT
Found at i:50541285 original size:21 final size:20
Alignment explanation
Indices: 50541243--50541281 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50541233 ATTTAGCCAT
*
50541243 TTTTTATTTTTATTTTAATA
1 TTTTTATTTTTAATTTAATA
*
50541263 TTTTTGTTTTTAATTTAAT
1 TTTTTATTTTTAATTTAAT
50541282 TATTACACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTTATTTTTAATTTAATA
Found at i:50554364 original size:47 final size:47
Alignment explanation
Indices: 50554265--50554357 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
50554255 GTTGTCTTAT
50554265 TTCAATGTGATTAGTCTGAGGTTAACACTGCTCGCGGAATTAAAAAA
1 TTCAATGTGATTAGTCTGAGGTTAACACTGCTCGCGGAATTAAAAAA
50554312 TTCAATGTGATTAGTCTGAGGTTAACACTGCTCGCGGAATTAAAAA
1 TTCAATGTGATTAGTCTGAGGTTAACACTGCTCGCGGAATTAAAAA
50554358 GATCAATTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (47 bp):
TTCAATGTGATTAGTCTGAGGTTAACACTGCTCGCGGAATTAAAAAA
Found at i:50556852 original size:43 final size:43
Alignment explanation
Indices: 50556805--50556916 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 43
50556795 CTTTTACTAA
* *
50556805 AAACGCCGCTAAAGAACATGATCTTTAGCGACCCTTTCCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGAACCTTTCCCCAC
** * * *
50556848 AAACGCCATTAAATAACATGACCTTTAGCGAAGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGAACCTTTCCCCAC
* * *
50556891 AAATGCTGCTATAGAACATGACCTTT
1 AAACGCCGCTAAAGAACATGACCTTT
50556917 GTGGCGCTTG
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGAACCTTTCCCCAC
Found at i:50557006 original size:43 final size:43
Alignment explanation
Indices: 50556941--50557050 Score: 130
Period size: 43 Copynumber: 2.6 Consensus size: 43
50556931 AAAAATGCCA
* * ** * **
50556941 ACTAAAGATCATGTTCTTTAGCGGTGTTTGTGGGAAAAGCGTC
1 ACTAAAGGTCATGTTCTATAGCGGCATTTGTAGGAAAAGCACC
* * *
50556984 GCTAAAGGTCATGTTCTATAGCGGCATTTTTAGGAAAAGTACC
1 ACTAAAGGTCATGTTCTATAGCGGCATTTGTAGGAAAAGCACC
50557027 ACTAAAGGTCATGTTCTATAGCGG
1 ACTAAAGGTCATGTTCTATAGCGG
50557051 AGTCTTCCCA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (43 bp):
ACTAAAGGTCATGTTCTATAGCGGCATTTGTAGGAAAAGCACC
Found at i:50559180 original size:47 final size:48
Alignment explanation
Indices: 50559111--50559232 Score: 151
Period size: 47 Copynumber: 2.6 Consensus size: 48
50559101 TGATATGTGT
*
50559111 GCTAGTGTAAGACATGTCTGGGACATGCATCG-ACAT-TGAGA-ACGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGCACATGTGAGATAC-A-A
* * *
50559158 GCTAGTGTAAGACATGTTTGGGACATGCATCGCCCTTGTGATATACAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGCACATGTGAGATACAA
* *
50559206 GCTAGTGTAAGACCTATTTGGGACATG
1 GCTAGTGTAAGACATGTTTGGGACATG
50559233 GAGTCAGCTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
47 31 0.47
48 28 0.42
49 5 0.08
50 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGCACATGTGAGATACAA
Found at i:50561753 original size:29 final size:30
Alignment explanation
Indices: 50561680--50561757 Score: 104
Period size: 31 Copynumber: 2.6 Consensus size: 30
50561670 TTAATTTTTG
* * *
50561680 AAAAGTAAAAGGACTAAAATTTATCAATTCA
1 AAAAGTACAAGGACTAAAATTGATCAAAT-A
50561711 AAAAGTACAAGGACTAAAATTGATCAAAT-
1 AAAAGTACAAGGACTAAAATTGATCAAATA
*
50561740 AAAAGTACATGGACTAAA
1 AAAAGTACAAGGACTAAA
50561758 CCTGTAACTT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 17 0.40
31 26 0.60
ACGTcount: A:0.55, C:0.10, G:0.13, T:0.22
Consensus pattern (30 bp):
AAAAGTACAAGGACTAAAATTGATCAAATA
Found at i:50567460 original size:20 final size:20
Alignment explanation
Indices: 50567431--50567475 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
50567421 AGCACATGTA
* *
50567431 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
50567451 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
50567471 TTCAT
1 TTCAT
50567476 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:50573666 original size:21 final size:22
Alignment explanation
Indices: 50573642--50573687 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
50573632 GGACAACCAA
* *
50573642 TATAAAGATT-TTATATTAATT
1 TATAAAGATTATTATAGTAAAT
*
50573663 TATAAAGGTTATTATAGTAAAT
1 TATAAAGATTATTATAGTAAAT
50573685 TAT
1 TAT
50573688 GAAATCTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (22 bp):
TATAAAGATTATTATAGTAAAT
Found at i:50576930 original size:21 final size:22
Alignment explanation
Indices: 50576906--50576961 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
50576896 GGACAACCAA
* *
50576906 TATAAAGATT-TTATATTAATT
1 TATAAAGATTATTATAGTAAAT
*
50576927 TATAAAGGTTATTATAGTAAAT
1 TATAAAGATTATTATAGTAAAT
*
50576949 TATGAAATATTAT
1 TAT-AAAGATTAT
50576962 GAATTATAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 9 0.32
22 12 0.43
23 7 0.25
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.46
Consensus pattern (22 bp):
TATAAAGATTATTATAGTAAAT
Found at i:50584737 original size:26 final size:25
Alignment explanation
Indices: 50584707--50584762 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
50584697 TATCTAGTGT
50584707 GTTTTATCAATATACTACCCACAGTA
1 GTTTTA-CAATATACTACCCACAGTA
* * *
50584733 GTTTTAGAATATACTATCCATAGTA
1 GTTTTACAATATACTACCCACAGTA
*
50584758 TTTTT
1 GTTTT
50584763 GGTTAAAACA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (25 bp):
GTTTTACAATATACTACCCACAGTA
Found at i:50584743 original size:25 final size:25
Alignment explanation
Indices: 50584715--50584762 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50584705 GTGTTTTATC
50584715 AATATACTACCCACAGTAGTTTTAG
1 AATATACTACCCACAGTAGTTTTAG
* * *
50584740 AATATACTATCCATAGTATTTTT
1 AATATACTACCCACAGTAGTTTT
50584763 GGTTAAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.17, G:0.08, T:0.40
Consensus pattern (25 bp):
AATATACTACCCACAGTAGTTTTAG
Found at i:50602134 original size:16 final size:16
Alignment explanation
Indices: 50602113--50602146 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
50602103 TAAAGGGTAG
50602113 TTAATGAAATTGAACT
1 TTAATGAAATTGAACT
50602129 TTAATGAAATTGAACT
1 TTAATGAAATTGAACT
50602145 TT
1 TT
50602147 CTTTTAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (16 bp):
TTAATGAAATTGAACT
Found at i:50610818 original size:20 final size:20
Alignment explanation
Indices: 50610793--50610840 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 20
50610783 GTTAAAGGTT
50610793 AAGAGAGAAAAAGAA-TTTGC
1 AAGAGAGAAAAA-AATTTTGC
50610813 AAGAGATAGAAAAAAATTTTGC
1 AAGAG--AGAAAAAAATTTTGC
50610835 AAGAGA
1 AAGAGA
50610841 ATGTCTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 6 0.24
21 2 0.08
22 17 0.68
ACGTcount: A:0.56, C:0.04, G:0.23, T:0.17
Consensus pattern (20 bp):
AAGAGAGAAAAAAATTTTGC
Found at i:50610825 original size:22 final size:22
Alignment explanation
Indices: 50610798--50610840 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
50610788 AGGTTAAGAG
50610798 AGAAAAAGAA-TTTGCAAGAGAT
1 AGAAAAA-AATTTTGCAAGAGAT
50610820 AGAAAAAAATTTTGCAAGAGA
1 AGAAAAAAATTTTGCAAGAGA
50610841 ATGTCTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.19
Consensus pattern (22 bp):
AGAAAAAAATTTTGCAAGAGAT
Found at i:50613501 original size:40 final size:40
Alignment explanation
Indices: 50613439--50613689 Score: 373
Period size: 40 Copynumber: 6.3 Consensus size: 40
50613429 ATTCGGATTG
50613439 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
50613478 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
50613518 ATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
50613558 ATAACCGGGCCAAGTCCCGAAGGCAATTGTCCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
50613598 ATAACCGGGCTAAGTCCCGAAGGAAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
50613638 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
50613678 ATATCC-GGCTAA
1 ATAACCGGGCTAA
50613690 ACCCCGAAAG
Statistics
Matches: 194, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 20 0.10
40 174 0.90
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:50621719 original size:79 final size:79
Alignment explanation
Indices: 50621586--50621812 Score: 355
Period size: 79 Copynumber: 2.9 Consensus size: 79
50621576 ATTCGGATTG
* * *
50621586 ATAACCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
*
50621651 TTGTGCAAGTTACT
66 TTGTCCAAGTTACT
* * * *
50621665 ATAACCGAGCCAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCAA
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
*
50621730 TTGTCCGAGTTACT
66 TTGTCCAAGTTACT
*
50621744 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
50621809 TTTG
65 TTTG
50621813 AGCGAGTAGC
Statistics
Matches: 133, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 83 0.62
80 50 0.38
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
TTGTCCAAGTTACT
Found at i:50621826 original size:40 final size:40
Alignment explanation
Indices: 50621586--50621819 Score: 364
Period size: 40 Copynumber: 5.9 Consensus size: 40
50621576 ATTCGGATTG
*
50621586 ATAACCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
50621625 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
50621665 ATAACCGAGCCAAGT-CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
50621704 ATAACCGGGCCAAGTCCCGAAGGCAATTGTCCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
50621744 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
50621784 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
50621820 AGCTATATCC
Statistics
Matches: 179, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 50 0.28
40 129 0.72
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:50621842 original size:119 final size:119
Alignment explanation
Indices: 50621604--50621845 Score: 335
Period size: 119 Copynumber: 2.0 Consensus size: 119
50621594 GCTAAGCCCA
* * * *
50621604 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 AAGGCAATTGTCCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTACTATAA
* * **
50621669 CCGAGCCAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCCG
66 CCGAGCCAAGTCCGAAGGCATTTGAGCGAGTTACTATAACCGAGCCAAACCCCG
*
50621723 AAGGCAATTGTCCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 AAGGCAATTGTCCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTACTATAA
* * * *
50621788 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-AGCTAAACCCCG
66 CCGAGCCAAGT-CCGAAGGCATTTGAGCGAGTTA-CTATAACCGAGCCAAACCCCG
50621842 AAGG
1 AAGG
50621846 TACTTGGTTT
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
119 83 0.77
120 25 0.23
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.23
Consensus pattern (119 bp):
AAGGCAATTGTCCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTACTATAA
CCGAGCCAAGTCCGAAGGCATTTGAGCGAGTTACTATAACCGAGCCAAACCCCG
Found at i:50624856 original size:8 final size:8
Alignment explanation
Indices: 50624843--50624868 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
50624833 AAAAAGTTAG
50624843 AATAATAA
1 AATAATAA
50624851 AATAATAA
1 AATAATAA
50624859 AATAATAA
1 AATAATAA
50624867 AA
1 AA
50624869 GTTGATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATAATAA
Found at i:50626087 original size:15 final size:15
Alignment explanation
Indices: 50626067--50626097 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50626057 GAATTGAAGG
*
50626067 TCATGAGTTCACCTC
1 TCATGAGTTCAACTC
50626082 TCATGAGTTCAACTC
1 TCATGAGTTCAACTC
50626097 T
1 T
50626098 AACGTTGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.35
Consensus pattern (15 bp):
TCATGAGTTCAACTC
Found at i:50630479 original size:40 final size:40
Alignment explanation
Indices: 50630424--50630612 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
50630414 TGAGCATTGG
50630424 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
50630464 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
50630504 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
50630544 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * * *
50630584 GATATGTCCGGGTTAAAACCCGAAGGCAA
1 AATATATCCGGGCTAAGACCCGAAGGCAA
50630613 ATGTGTTTGC
Statistics
Matches: 140, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:50634760 original size:40 final size:40
Alignment explanation
Indices: 50634715--50635006 Score: 349
Period size: 40 Copynumber: 7.3 Consensus size: 40
50634705 CATTTGAATG
* *
50634715 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
50634755 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * *
50634795 ATACCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
50634835 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
50634875 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
50634915 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
50634955 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
50634995 ATATCC-GGCTAA
1 ATATCCGGGCTAA
50635007 ATTCCGAAGA
Statistics
Matches: 220, Mismatches: 27, Indels: 11
0.85 0.10 0.04
Matches are distributed among these distances:
39 9 0.04
40 206 0.94
41 5 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:50634852 original size:80 final size:80
Alignment explanation
Indices: 50634719--50635006 Score: 384
Period size: 80 Copynumber: 3.6 Consensus size: 80
50634709 TGAATGATAT
* *
50634719 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
50634784 TGCGAGTTGCTATAC
66 TGCGAGTTGCTATAC
* * * * * *
50634799 CCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGTTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
* * * *
50634864 TGCTAG-TGATTTTAT
66 TGCGAGTTG-CTATAC
* *
50634879 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTT
50634943 GTGCGAGTTGCTATAC
65 GTGCGAGTTGCTATAC
* * *
50634959 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAA
50635007 ATTCCGAAGA
Statistics
Matches: 181, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
79 10 0.06
80 166 0.92
81 5 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATAC
Found at i:50634934 original size:120 final size:120
Alignment explanation
Indices: 50634715--50635006 Score: 426
Period size: 120 Copynumber: 2.4 Consensus size: 120
50634705 CATTTGAATG
* *
50634715 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
* * * * *
50634780 TTTGTGCGAGTTGCTATACCCGGGTTAAGTCCCGAAGGCATTTATGCTAG-TGATT
66 TTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CT
* *
50634835 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
* *
50634900 TTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCT
* * * *
50634955 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
50635007 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 17, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
119 6 0.04
120 146 0.95
121 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (120 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCT
Found at i:50642184 original size:21 final size:22
Alignment explanation
Indices: 50642155--50642201 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
50642145 CAGAAGGAGT
*
50642155 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
50642177 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
50642198 GAGT
1 GAGT
50642202 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:50648597 original size:13 final size:14
Alignment explanation
Indices: 50648576--50648608 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
50648566 TTTATGTAAT
50648576 ATTTCTTTGT-TAA
1 ATTTCTTTGTATAA
*
50648589 ATTTTTTTGTATAA
1 ATTTCTTTGTATAA
50648603 ATTTCT
1 ATTTCT
50648609 CAACATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (14 bp):
ATTTCTTTGTATAA
Found at i:50648889 original size:29 final size:29
Alignment explanation
Indices: 50648856--50648911 Score: 96
Period size: 29 Copynumber: 1.9 Consensus size: 29
50648846 TGGTCTAATG
50648856 TGTAATTTTATATATGA-ATTTTGATTTTA
1 TGTAATTTTATATATGATA-TTTGATTTTA
50648885 TGTAATTTTATATATGATATTTGATTT
1 TGTAATTTTATATATGATATTTGATTT
50648912 GATCCAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 25 0.96
30 1 0.04
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (29 bp):
TGTAATTTTATATATGATATTTGATTTTA
Found at i:50648920 original size:29 final size:29
Alignment explanation
Indices: 50648859--50648920 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
50648849 TCTAATGTGT
* **
50648859 AATTTTATATATGAATTTTGATTTTATGT
1 AATTTTATATATGAATTTTGATTTGATCC
50648888 AATTTTATATATG-ATATTTGATTTGATCC
1 AATTTTATATATGAAT-TTTGATTTGATCC
50648917 AATT
1 AATT
50648921 CTTGTAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.55
Consensus pattern (29 bp):
AATTTTATATATGAATTTTGATTTGATCC
Found at i:50649075 original size:31 final size:30
Alignment explanation
Indices: 50649039--50649111 Score: 74
Period size: 31 Copynumber: 2.4 Consensus size: 30
50649029 GATTAAATCA
*
50649039 AAATTAAAGTTTCAAGTATACATTTGAACC
1 AAATTAAAGTTTCAAGTATACAATTGAACC
* * * * * *
50649069 ACAATTAGACTTTCACGTGTATAATTGCACC
1 A-AATTAAAGTTTCAAGTATACAATTGAACC
50649100 AAATTAAAGTTT
1 AAATTAAAGTTT
50649112 ATATTTACAA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
30 10 0.30
31 23 0.70
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (30 bp):
AAATTAAAGTTTCAAGTATACAATTGAACC
Found at i:50650207 original size:34 final size:36
Alignment explanation
Indices: 50650149--50650224 Score: 104
Period size: 34 Copynumber: 2.2 Consensus size: 36
50650139 TTTTTTTATT
* *
50650149 TTAAAT-TCAAAATATAATCTTTAAAAATATTAAAA
1 TTAAATATCAAAATATAACCTTTAAAAATATAAAAA
*
50650184 TTAAATATCAAAAT-T-ACCTTTAAAAATGTAAAAA
1 TTAAATATCAAAATATAACCTTTAAAAATATAAAAA
50650218 TTAAATA
1 TTAAATA
50650225 AGAAACATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
34 23 0.62
35 7 0.19
36 7 0.19
ACGTcount: A:0.57, C:0.07, G:0.01, T:0.36
Consensus pattern (36 bp):
TTAAATATCAAAATATAACCTTTAAAAATATAAAAA
Found at i:50652234 original size:23 final size:23
Alignment explanation
Indices: 50652208--50652271 Score: 110
Period size: 23 Copynumber: 2.8 Consensus size: 23
50652198 AAACTTAAAC
* *
50652208 AACCATGCTATAGAAGCAAACAT
1 AACCATGCCATAAAAGCAAACAT
50652231 AACCATGCCATAAAAGCAAACAT
1 AACCATGCCATAAAAGCAAACAT
50652254 AACCATGCCATAAAAGCA
1 AACCATGCCATAAAAGCA
50652272 GACAAAATCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.50, C:0.25, G:0.11, T:0.14
Consensus pattern (23 bp):
AACCATGCCATAAAAGCAAACAT
Found at i:50654076 original size:47 final size:46
Alignment explanation
Indices: 50653966--50654136 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 46
50653956 GTTATTCTGG
* **
50653966 GCTAGTGTTAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGAGA
* * *
50654012 GCCTA-TTTAAGACCATGTCTGGGATATGGCATCAG-CATCAAGATGAGT
1 G-CTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CAAGATGAGA
* * * * * *
50654060 GCTAGTGTAAGACATGTCCGGGACATACATCGGCCTCGAGACGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATG-AGA
* *
50654106 GCCAGTGTAAGACATGTTTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
50654137 GGCTATGAGA
Statistics
Matches: 99, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
46 43 0.43
47 35 0.35
48 21 0.21
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGAGA
Found at i:50670743 original size:46 final size:45
Alignment explanation
Indices: 50670676--50670850 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
50670666 TGTAACCTGC
*
50670676 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* *
50670722 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* * * * * *
50670768 ACATCTCA-TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
50670815 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
50670851 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
45 3 0.03
46 68 0.63
47 33 0.31
48 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:50670796 original size:93 final size:93
Alignment explanation
Indices: 50670684--50670854 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
50670674 GCCCATAAGC
* * * *
50670684 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50670749 CGAGCTCGGATGCCTAGTTACATCTCAT
66 CGAGCTCGGATGCCTAGTTACATCTCAT
*
50670777 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
50670842 CGAGTTCGGATGC
66 CGAGCTCGGATGC
50670855 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAT
Found at i:50672332 original size:17 final size:17
Alignment explanation
Indices: 50672286--50672336 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
50672276 TTTAAAAAAG
50672286 AATTATAACTATTTAAAT
1 AATTATAA-TATTTAAAT
* * *
50672304 AATAATATTATTTGAAT
1 AATTATAATATTTAAAT
*
50672321 AGTTATAATA-TTAAAT
1 AATTATAATATTTAAAT
50672337 GAATAATTAT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
16 5 0.19
17 15 0.58
18 6 0.23
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (17 bp):
AATTATAATATTTAAAT
Found at i:50672339 original size:20 final size:20
Alignment explanation
Indices: 50672305--50672346 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
50672295 TATTTAAATA
** *
50672305 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
50672325 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
50672345 AT
1 AT
50672347 GTATTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:50675251 original size:22 final size:23
Alignment explanation
Indices: 50675219--50675264 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
50675209 ATTTCGACTC
*
50675219 TAAATGTTTATTATTATTTTTTA
1 TAAATGTTTATTAATATTTTTTA
50675242 TAAAT-TTTATTAATATTTTTTA
1 TAAATGTTTATTAATATTTTTTA
50675264 T
1 T
50675265 TATGAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (23 bp):
TAAATGTTTATTAATATTTTTTA
Found at i:50676378 original size:96 final size:97
Alignment explanation
Indices: 50676261--50676493 Score: 296
Period size: 96 Copynumber: 2.4 Consensus size: 97
50676251 GTTTTTAAAT
* ** *
50676261 TTTAGGG-TTTTAAGGAAAAAATTAAATAAATTAAGGTTT-AGTGTTTGTTAATTAAATTAATTA
1 TTTAGGGTTTTTAAGGAAAAAATTAAATAAATTAGGGTTTAAG-GTTACTTAAGTAAATTAATTA
*
50676324 CT-AATTTT-AAAAAATTAGATTATGG-TTTAGTG
65 -TAAATTTTAAAAAAATTAGATTA-GGATTTAGGG
* * *
50676356 TTTATGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAAGGTTACTTGAGTAAATTAATTAT
1 TTTAGGGTTTTTAAGGAAAAAATTAAATAAATTAGGGTTTAAGGTTACTTAAGTAAATTAATTAT
50676421 AAATTTTAAAAAAATTAGATTAGGATTTTAGGG
66 AAATTTTAAAAAAATTAGATTAGGA-TTTAGGG
* * *
50676454 TTTAGGGTATTTAAGAAAAAAACTAAATAAATTAGGGTTT
1 TTTAGGGTTTTTAAGGAAAAAATTAAATAAATTAGGGTTT
50676494 GGGGTTTAGG
Statistics
Matches: 119, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
95 7 0.06
96 55 0.46
97 16 0.13
98 41 0.34
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.40
Consensus pattern (97 bp):
TTTAGGGTTTTTAAGGAAAAAATTAAATAAATTAGGGTTTAAGGTTACTTAAGTAAATTAATTAT
AAATTTTAAAAAAATTAGATTAGGATTTAGGG
Found at i:50676762 original size:126 final size:126
Alignment explanation
Indices: 50676544--50677081 Score: 855
Period size: 126 Copynumber: 4.3 Consensus size: 126
50676534 AAAAGCTTCT
** *
50676544 ACGTGGACGCTCTTTTGCTACAAAAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
*
50676609 ATAATGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * *
50676670 ACGTGGACGGTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
50676735 ATAGTG-CAAAAAACGCTTCAAGTAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTC-AAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
*
50676796 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * *
50676861 ATAGTGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * **
50676921 ACATGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
50676986 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAATAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
50677047 ACGTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
50677082 TAACTTGGGC
Statistics
Matches: 379, Mismatches: 30, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
125 115 0.30
126 264 0.70
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:50676980 original size:251 final size:252
Alignment explanation
Indices: 50676536--50677070 Score: 858
Period size: 251 Copynumber: 2.1 Consensus size: 252
50676526 TAATCTAAAA
* ** *
50676536 AAGCTTCTACGTGGACGCTCTTTTGCTACAAAAGTCTCTGAAAAAATAAATTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAAATAAATTTGAGAAGACGTGT
50676601 CTGCGCAAATAATGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGC
66 CTGCGCAAATAATGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGC
* * *
50676666 TCCCACGTGGACGGTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGT
131 TCCCACATGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGC
* *
50676731 GCAAATAGTG-CAAAAAACGCTTCAAGTAGGATGCATTGTCAGCAAAAGTACTGAAAG
196 ACAAATAGTGTC-AAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
*
50676788 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAAATAATTTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAAATAAATTTGAGAAGACGTGT
* * * *
50676853 CTGCGCAAATAGTGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGC
66 CTGCGCAAATAATGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGC
* * *
50676917 TCCCACATGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGC
131 TCCCACATGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGC
* * *
50676982 ATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAT
196 ACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
*
50677039 AAGCTCCCACGTGGACGCTCTTTTGCTACAGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGT
50677071 GGTTTCTGAA
Statistics
Matches: 261, Mismatches: 21, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
251 186 0.71
252 75 0.29
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (252 bp):
AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAAATAAATTTGAGAAGACGTGT
CTGCGCAAATAATGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGC
TCCCACATGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGC
ACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
Found at i:50680262 original size:116 final size:116
Alignment explanation
Indices: 50680087--50680467 Score: 627
Period size: 116 Copynumber: 3.3 Consensus size: 116
50680077 TTTATATTTT
* * *
50680087 ATTACATGAAATAATATAAAAATATTCAAAATATTTCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
* *
50680152 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
* *
50680203 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
* * *
50680268 AAAATATAAAAGTAATTTATAATTAATTTATTTAAAATAACCTTTTATCTA
66 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
* *
50680319 ATTACATTAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCAATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATT-
*
50680384 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
65 AAAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
*
50680436 ATTACATGAAATAATATAAAAAGATTCAAAAT
1 ATTACATGAAATAATATAAAAATATTCAAAAT
50680468 GTTTGTACAA
Statistics
Matches: 244, Mismatches: 20, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
116 166 0.68
117 78 0.32
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:50680992 original size:30 final size:30
Alignment explanation
Indices: 50680953--50681016 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
50680943 TGAACTGTTT
*
50680953 GGCCCGGTGACTGTGTAGGTCCTGTTGCTG
1 GGCCCGGTGACTGTGTAGGTCCTGTTGATG
* * * *
50680983 GGCCGGGTGATTGTGTGGGTGCTGTTGATG
1 GGCCCGGTGACTGTGTAGGTCCTGTTGATG
50681013 GGCC
1 GGCC
50681017 TGCGTCGTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.06, C:0.19, G:0.45, T:0.30
Consensus pattern (30 bp):
GGCCCGGTGACTGTGTAGGTCCTGTTGATG
Found at i:50682699 original size:22 final size:22
Alignment explanation
Indices: 50682687--50682736 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
50682677 TAACGAGAGT
50682687 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
*
50682709 TTTGAGA-G-ATTTGAGA-AGAA
1 TTTGAGAGGAATTTAAGAGA-AA
50682729 TTTGAGAG
1 TTTGAGAG
50682737 AATATTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 1 0.04
20 16 0.64
21 1 0.04
22 7 0.28
ACGTcount: A:0.40, C:0.00, G:0.30, T:0.30
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:50682731 original size:11 final size:10
Alignment explanation
Indices: 50682687--50682744 Score: 64
Period size: 11 Copynumber: 5.5 Consensus size: 10
50682677 TAACGAGAGT
50682687 TTTGAGAGGAA
1 TTTGAGA-GAA
*
50682698 TTTAAGAGAAA
1 TTTGAGAG-AA
50682709 TTTGAGAG-A
1 TTTGAGAGAA
50682718 TTTGAGAAGAA
1 TTTGAG-AGAA
50682729 TTTGAGAGAA
1 TTTGAGAGAA
50682739 TATTGA
1 T-TTGA
50682745 AAGATTGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 7 0.17
10 8 0.20
11 26 0.63
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (10 bp):
TTTGAGAGAA
Found at i:50682750 original size:31 final size:31
Alignment explanation
Indices: 50682687--50682750 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
50682677 TAACGAGAGT
* *
50682687 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAAGAATTTAAGAGAAATTTGAAAGA
*
50682718 TTTGAGAAGAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAAGAATTTAAGAGAAAT-TTGAAAGA
50682749 TT
1 TT
50682751 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (31 bp):
TTTGAGAAGAATTTAAGAGAAATTTGAAAGA
Found at i:50682956 original size:16 final size:16
Alignment explanation
Indices: 50682935--50682967 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
50682925 ATGACATCCT
50682935 TGAGGAAGCGTTTTCC
1 TGAGGAAGCGTTTTCC
50682951 TGAGGAAGCGTTTTCC
1 TGAGGAAGCGTTTTCC
50682967 T
1 T
50682968 ACTTTTTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.33
Consensus pattern (16 bp):
TGAGGAAGCGTTTTCC
Found at i:50689462 original size:21 final size:22
Alignment explanation
Indices: 50689436--50689484 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
50689426 ATTTTTAAAA
*
50689436 TTTTAAACATTTTTAT-ATATT
1 TTTTAAACATTTTTATAAAATT
* *
50689457 TTTT-AAGATTTTTTTAAAATT
1 TTTTAAACATTTTTATAAAATT
50689478 TTTTAAA
1 TTTTAAA
50689485 TTTAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 9 0.39
21 12 0.52
22 2 0.09
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAAACATTTTTATAAAATT
Found at i:50689467 original size:10 final size:9
Alignment explanation
Indices: 50689427--50689487 Score: 50
Period size: 10 Copynumber: 6.2 Consensus size: 9
50689417 GGGACTTTTA
*
50689427 TTTTTAAAA
1 TTTTTAAAT
*
50689436 TTTTAAACAT
1 TTTTTAA-AT
*
50689446 TTTTATATAT
1 TTTT-TAAAT
50689456 TTTTTAAGATT
1 TTTTTAA-A-T
50689467 TTTTTAAAAT
1 TTTTT-AAAT
50689477 TTTTTAAAT
1 TTTTTAAAT
50689486 TT
1 TT
50689488 AAAAAATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
9 14 0.33
10 18 0.43
11 8 0.19
12 2 0.05
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:50694163 original size:13 final size:13
Alignment explanation
Indices: 50694145--50694169 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50694135 ATAATTTTGC
50694145 TTTTAGAAAACAT
1 TTTTAGAAAACAT
50694158 TTTTAGAAAACA
1 TTTTAGAAAACA
50694170 AAAATGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (13 bp):
TTTTAGAAAACAT
Found at i:50698666 original size:3 final size:3
Alignment explanation
Indices: 50698653--50698703 Score: 70
Period size: 3 Copynumber: 17.0 Consensus size: 3
50698643 ACTACCAAAC
50698653 AAG AA- AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAGG AA- AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G AAG AAG
50698697 AAAG AAG
1 -AAG AAG
50698704 GAAAAAAAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.09
3 34 0.77
4 6 0.14
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:50701870 original size:548 final size:542
Alignment explanation
Indices: 50700305--50701994 Score: 1950
Period size: 548 Copynumber: 3.1 Consensus size: 542
50700295 CGACAGTTAC
* * *
50700305 ACCCATTATGTCATCTTGTAATTTGCTTAA-GAATTTATAATTAGAACTTAATTTTAAGGGGTTA
1 ACCCATTGTGCCATCTTGTAATTTGCTTAAGGAA-TTATAATTAGAACTTAATTTAAAGGGGTTA
*
50700369 AATAGTAATTATA-CTCAG-AATAT-T-TATGGCCGATTATTG-A-AA-TATGTATGTTATATTA
65 AATAGTAATTATACCT-AGAAATATATATATGG-CGGTTATTGAAGAAGTATGTATGTTATATTA
*
50700427 TAAAACATTAGTAATGAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGG
128 TAAAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGG
* *
50700492 AATAGCAGGCAAAAACAAAAGCATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGTGAGAAATA
193 AATAG-ATGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGTGAGAAATA
* *
50700557 AGAGAGGAACGTTT-GGCTTTAAGGGTGT-AA-CCCAACAATTTTTTTTTTTGGAAATGTTAAAA
257 AGAGAGGAAC-TTTCGGCTTTAAGGGTGTAAACCCCAAAAATTTTTGTTTTTGGAAATGTTAAAA
* * * *
50700619 CATGTCAAAGGTGTAACGTTTGGCTTTGAAAATATATTTTTACATGAGAAATA-CAGCTTGAT-T
321 CATGTCAAGGGTGTAACGTTTGGCTTTGAAAATATTTTTTTATATGAGAACTACCA-CTTGATAT
* * * * *
50700682 CGACAGTTTCACTCATTGTGTCGTCTTATTATGAAAGTATTATTATTATTATTATCATGAACTTG
385 -GACGGTTTCACCCATTGTGTCGTCTTATTAT-AAA--AATATTATTATTTTTATCATGAAATTG
* * * *
50700747 CTGCGGAGGCAATTTTAACAAAAAAAAATTGATACGACGGTTTCACCCGTTGTGCCATCTTGTTA
446 CT---TA-GCAATTTTAACAAAAAAAAACTGATACGACGGTTTCACCCATTGTGTCATCTTGTTA
*
50700812 TAAAATATTATTATTTTTATCATAAAACTGCTGTAA
507 TAAAATATTATTATTTTTATCATGAAACTGCTGTAA
* * * *
50700848 ACCCGTTG-CCTCATCTTGTGATTTGCTTAAGGATTTAT-ATCTAGAACTTAATTTAAAGGGGTT
1 ACCCATTGTGC-CATCTTGTAATTTGCTTAAGGAATTATAAT-TAGAACTTAATTTAAAGGGGTT
* *
50700911 AAATAATAATTATACC-A-AGA-ATATATATGGTCGGTTATTGAAGAAAGTATGTATGTTATATT
64 AAATAGTAATTATACCTAGAAATATATATATGG-CGGTTATTGAAG-AAGTATGTATGTTATATT
* * * *
50700973 ATAAAACATTATTAATTAAAACTATAAAATGAAAATTTAATTAAAAAGAACATAAGTAATAATGG
127 ATAAAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGG
* *
50701038 GAATACG-TGGCAAAAACAAAAATATTTCCATCTTTTCTTCATGCAAACCGAACCAAGTGAGAAA
192 GAATA-GAT-GCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGTGAGAAA
* * * *
50701102 TAAGAGAGGAACGTTCGACTTTAAGGGTGTAATGCCCCAAAAACTTTTGTTTTTGGAAATGTTAA
255 TAAGAGAGGAACTTTCGGCTTTAAGGGTGTAA-ACCCCAAAAATTTTTGTTTTTGGAAATGTTAA
* ** * *
50701167 AACATGTCAAGGGTGTAATGTTTGATTTTGAAAATATTTTTTTATATGAGAAACTGCCAATTGAT
319 AACATGTCAAGGGTGTAACGTTTGGCTTTGAAAATATTTTTTTATATGAG-AACTACCACTTGAT
** * * * *
50701232 ACAACGATTTCACCTATTGTGTCGTCTTATTATAAAAATATTATTATTTTTATCATGATATTGTT
383 ATGACGGTTTCACCCATTGTGTCGTCTTATTATAAAAATATTATTATTTTTATCATGAAATTGCT
* *** *
50701297 TCGGAGGCAATTTTAACAAAAAAAAACTAATACGTTAGTTTCATCCATTGTGTCATCTTGTTATA
448 T---A-GCAATTTTAACAAAAAAAAACTGATACGACGGTTTCACCCATTGTGTCATCTTGTTATA
* *
50701362 AAATATTATTATTTTTATCATGAAATTGTTGTAA
509 AAATATTATTATTTTTATCATGAAACTGCTGTAA
* * * *
50701396 ACCCATTGTGCCATCTTGTAATTTGCTTAAGGAATTATAGTTAGATCTTAATTCAAAGGGGCTAA
1 ACCCATTGTGCCATCTTGTAATTTGCTTAAGGAATTATAATTAGAACTTAATTTAAAGGGGTTAA
* *
50701461 ATAGTAATTATACCTAGAATATATATATATGGCGGGTTATTGAAGTAAGTATGTAAGTTTTATTA
66 ATAGTAATTATACCTAGAA-ATATATATATGGC-GGTTATTGAAG-AAGTATGTATGTTATATTA
** * * *
50701526 TAAAATGTTAGTAATTAAAATTATAAAATGAAATTTTAATTAAATAGAACCTAAGTGATCATGGG
128 TAAAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGG
* * * *
50701591 AATAGAATGCAAAAAAAAAAAAAACATTTCCATCTTTTTTTTGTGCAAACCGAACAAAGTGAGAA
193 AATAG-ATGC---AAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGTGAGAA
* * * * * * * *
50701656 AGAAGAGACGAGCTTTCGGCTTTAATGGTGTAACACCCCAAAAATTTTTGTTCTTGTAATTGCTA
254 ATAAGAGAGGAACTTTCGGCTTTAAGGGTGTAA-ACCCCAAAAATTTTTGTTTTTGGAAATGTTA
* * * * * *
50701721 AAACTTGTTAAGGGTGTAACATTAGGCTTTGAAAATATTTTTTTTATATGAGAATCTACCACCTC
318 AAACATGTCAAGGGTGTAACGTTTGGCTTTGAAAATA-TTTTTTTATATGAGAA-CTACCACTTG
* * * *
50701786 ATATGATGGTTACACCCATTGTGTCATCTTATTATAAAAATATTATTCTTTTTATCATGAAATTG
381 ATATGACGGTTTCACCCATTGTGTCGTCTTATTATAAAAATATTATTATTTTTATCATGAAATTG
* * * *
50701851 -TTA-AAATTTT-A-ATAAAAAAACTGATACAACGGTTTCACCCATTGTATCATCTTGTTATAAA
446 CTTAGCAATTTTAACAAAAAAAAACTGATACGACGGTTTCACCCATTGTGTCATCTTGTTATAAA
* * * * *
50701912 ATGTTGTTATTTTTATCATGGAACTACTATAA
511 ATATTATTATTTTTATCATGAAACTGCTGTAA
*** * * *
50701944 ACCCATTGCATCATCTTGTAATTTACTTAAGGATTTAAAATTAGAACTTAA
1 ACCCATTGTGCCATCTTGTAATTTGCTTAAGGAATTATAATTAGAACTTAA
50701995 GTTACCTAGA
Statistics
Matches: 967, Mismatches: 143, Indels: 69
0.82 0.12 0.06
Matches are distributed among these distances:
541 2 0.00
542 5 0.01
543 75 0.08
544 4 0.00
546 4 0.00
547 157 0.16
548 286 0.30
549 4 0.00
550 81 0.08
551 37 0.04
552 103 0.11
553 1 0.00
555 132 0.14
556 76 0.08
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (542 bp):
ACCCATTGTGCCATCTTGTAATTTGCTTAAGGAATTATAATTAGAACTTAATTTAAAGGGGTTAA
ATAGTAATTATACCTAGAAATATATATATGGCGGTTATTGAAGAAGTATGTATGTTATATTATAA
AACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAAT
AGATGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGTGAGAAATAAGAG
AGGAACTTTCGGCTTTAAGGGTGTAAACCCCAAAAATTTTTGTTTTTGGAAATGTTAAAACATGT
CAAGGGTGTAACGTTTGGCTTTGAAAATATTTTTTTATATGAGAACTACCACTTGATATGACGGT
TTCACCCATTGTGTCGTCTTATTATAAAAATATTATTATTTTTATCATGAAATTGCTTAGCAATT
TTAACAAAAAAAAACTGATACGACGGTTTCACCCATTGTGTCATCTTGTTATAAAATATTATTAT
TTTTATCATGAAACTGCTGTAA
Found at i:50704169 original size:49 final size:49
Alignment explanation
Indices: 50703806--50704181 Score: 189
Period size: 48 Copynumber: 7.8 Consensus size: 49
50703796 CTACATATCG
* * * * * ** *
50703806 ATGCCATATCCCAGATATGGTCTTATATGA-AGTCTCATGTC-GGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACGAGA-TCTCATCTCAAATGCCA
* * * * * **
50703854 ATGGCATGTCTCAGACATGGTCTTATACGGGACCTCATAGC-AATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACGAGATCTCATCTCAAATGCCA
* * * * * *
50703902 ATGTCATATCCCAGATATGGTCTTACATGGGATCTCATACT--GATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACGAGATCTCAT-CTCAAATGCCA
* * * ** * * * * *
50703950 ATGCCATATCCCATATATGGTCTTACACTG-GCCCACATATC-AACGTCG
1 ATGCCATGTCCCAGACATGGTCTTACAC-GAGATCTCATCTCAAATGCCA
* * * * * *
50703998 ATGCCATGTCCCAGACATGGTTTTACGCTG-GCA-CACATATC-AACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACAC-GAG-ATCTCATCTCAAATGCCA
** * * * ** *
50704046 ATGTTATGTCCCAGATATGGTCTTATACTG-GCTCTCATCTCGGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACAC-GAGATCTCATCTCAAATGCCA
* * *
50704095 ATGCTATGTCCCAGACATAGTCTTACACGAGATCTCATCTTAAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACGAGATCTCATCTCAAATGCCA
50704144 ATGCCATGTCCCAGACATGGTCTTACACGAGATCTCAT
1 ATGCCATGTCCCAGACATGGTCTTACACGAGATCTCAT
50704182 TAACAATGGT
Statistics
Matches: 258, Mismatches: 62, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
47 1 0.00
48 176 0.68
49 81 0.31
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAGATCTCATCTCAAATGCCA
Found at i:50712157 original size:160 final size:160
Alignment explanation
Indices: 50711893--50712272 Score: 580
Period size: 160 Copynumber: 2.4 Consensus size: 160
50711883 CAATCCTGCC
* *
50711893 AAATTAACACGGGCATGCGACACGCCTGTGCCCACCACCCGTGGTCAAAATTGTCGAAATAACAC
1 AAATTAACACGGGCGTGCGACACGCCCGTGCCCACCACCCGTGGTCAAAATTGTCGAAATAACAC
* *
50711958 GGGCGTACGCATACATACACGGGCGTGGGAGAAGCGAACGAAGTAGGATACGGTGTGAAACACGC
66 GGGCGTACGCATACATACACAGGCGTGGGAGAAGCGAACGAAGTAGGACACGGTGTGAAACACGC
** * *
50712023 CTGTTTCTATAAGCCGTGGTAGAAACTGAG
131 CCATGTCTATAAGCCATGGTAGAAACTGAG
** * *
50712053 AAATTAACACGGGCGTGCGACACGCCCGTGCCCACCACCCGTGGTTGAAATTGTCGAAATAATAG
1 AAATTAACACGGGCGTGCGACACGCCCGTGCCCACCACCCGTGGTCAAAATTGTCGAAATAACAC
* * *
50712118 GGGCGTGCGCATACATACACAGGTGTGGGAGAAGCGAACGAAGTAGGACACGGTGTGCAACACGC
66 GGGCGTACGCATACATACACAGGCGTGGGAGAAGCGAACGAAGTAGGACACGGTGTGAAACACGC
50712183 CCATGTCTATAAGCCATGGTAGAAACTGAG
131 CCATGTCTATAAGCCATGGTAGAAACTGAG
* ** * *
50712213 AAATTACCACGGGCGTGCGACACGATCGTGCCCACCACCCGTGGTCAAAACTGTCAAAAT
1 AAATTAACACGGGCGTGCGACACGCCCGTGCCCACCACCCGTGGTCAAAATTGTCGAAAT
50712273 GACATGATTG
Statistics
Matches: 198, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
160 198 1.00
ACGTcount: A:0.30, C:0.25, G:0.28, T:0.17
Consensus pattern (160 bp):
AAATTAACACGGGCGTGCGACACGCCCGTGCCCACCACCCGTGGTCAAAATTGTCGAAATAACAC
GGGCGTACGCATACATACACAGGCGTGGGAGAAGCGAACGAAGTAGGACACGGTGTGAAACACGC
CCATGTCTATAAGCCATGGTAGAAACTGAG
Found at i:50712393 original size:18 final size:18
Alignment explanation
Indices: 50712370--50712418 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
50712360 ATTCATCTTT
50712370 TATTTATTTTTATTTTTA
1 TATTTATTTTTATTTTTA
* *
50712388 TATTTATTTATCTTTTTA
1 TATTTATTTTTATTTTTA
*
50712406 -ACTTACTTTTTAT
1 TATTTA-TTTTTAT
50712419 CCTATTTCTC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTTATTTTTATTTTTA
Found at i:50714386 original size:13 final size:13
Alignment explanation
Indices: 50714368--50714392 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50714358 AGCCACACCG
50714368 CACGGGCGTGTCA
1 CACGGGCGTGTCA
50714381 CACGGGCGTGTC
1 CACGGGCGTGTC
50714393 CTTGTCGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTCA
Found at i:50722181 original size:47 final size:47
Alignment explanation
Indices: 50722112--50722280 Score: 193
Period size: 47 Copynumber: 3.6 Consensus size: 47
50722102 GCCCATAAGT
*
50722112 GAACTCGGACTCAAATCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * * ***
50722159 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTC-G-GATGC-CTAGTTACATCTCTC
50722205 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* *
50722252 GAACTCGGACTCACCTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
50722281 CATTCGCATC
Statistics
Matches: 98, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 30 0.31
47 56 0.57
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:50722263 original size:93 final size:93
Alignment explanation
Indices: 50722104--50722330 Score: 409
Period size: 93 Copynumber: 2.4 Consensus size: 93
50722094 TGTAACCCGC
*
50722104 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
50722169 TCAACTCAACGAGTTCAGACATTCGCAT
66 TCAACTCAACGAGTTCAGACATTCGCAT
50722197 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
* *
50722262 TCACCTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCAGACATTCGCAT
* *
50722290 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
50722331 CAAATATCCT
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 129 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
TCAACTCAACGAGTTCAGACATTCGCAT
Found at i:50722325 original size:46 final size:46
Alignment explanation
Indices: 50722159--50722326 Score: 198
Period size: 46 Copynumber: 3.6 Consensus size: 46
50722149 TACATCTCTC
*
50722159 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
* * * ***
50722205 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT
*
50722251 CGAACTCGGACTCACCTCAACGAGTTCGGACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
*
50722298 GAACTCGGACTCAACTCAACAAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
50722327 TGCCCAAATA
Statistics
Matches: 99, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 58 0.59
47 31 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:50726599 original size:27 final size:27
Alignment explanation
Indices: 50726568--50726745 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
50726558 TAAATTGTAC
50726568 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50726595 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50726621 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50726649 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
50726677 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50726704 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50726731 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50726746 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50726682 original size:82 final size:81
Alignment explanation
Indices: 50726569--50726724 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
50726559 AAATTGTACA
*
50726569 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
50726633 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50726650 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
50726715 TGCGAGTTGA
65 TGCGAATTGA
50726725 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50726736 original size:82 final size:81
Alignment explanation
Indices: 50726565--50726745 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
50726555 GATTAAATTG
*
50726565 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
50726630 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50726646 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
50726710 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50726728 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50726746 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50728704 original size:93 final size:93
Alignment explanation
Indices: 50728596--50728766 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
50728586 ACCCATAAGT
* * *
50728596 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGAATCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGAATCAACTCAA
50728661 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * *
50728689 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGAATCAACTCAA
50728754 CGAGCTCGGATGC
66 CGAGCTCGGATGC
50728767 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGAATCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:50728763 original size:46 final size:46
Alignment explanation
Indices: 50728588--50728763 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
50728578 TGTAACCCAC
* * * *
50728588 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
50728634 CCATAAGTGAACTCAGAATCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
50728684 CTC-T---CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
*
50728727 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
50728764 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 61 0.58
47 27 0.25
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:50731189 original size:15 final size:15
Alignment explanation
Indices: 50731163--50731218 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
50731153 CAAGGAAACC
50731163 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
50731178 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
50731193 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
50731208 GAATAAAGAAA
1 GAATAAAGAAA
50731219 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:50734287 original size:93 final size:93
Alignment explanation
Indices: 50734180--50734350 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
50734170 GCCCATAAGT
* *
50734180 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGAATCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
50734245 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
50734273 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
50734338 CGAGCTCGGATGC
66 CGAGCTCGGATGC
50734351 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:50734347 original size:46 final size:46
Alignment explanation
Indices: 50734172--50734347 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
50734162 TGTAACCCGC
* * *
50734172 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
50734218 CCATAAGTGAACTCGGAATCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
50734264 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
50734311 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
50734348 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:50739349 original size:93 final size:93
Alignment explanation
Indices: 50739237--50739451 Score: 403
Period size: 93 Copynumber: 2.3 Consensus size: 93
50739227 GCCCATAAGT
* * *
50739237 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50739302 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
50739330 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50739395 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
50739423 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
50739452 TGCCCAAATA
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 119 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:50739352 original size:47 final size:47
Alignment explanation
Indices: 50739283--50739455 Score: 228
Period size: 47 Copynumber: 3.7 Consensus size: 47
50739273 ATCCATAAGT
50739283 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * ***
50739330 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCTC
50739376 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
*
50739423 GAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCC
50739456 CAAATATCCT
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 32 0.30
47 64 0.60
49 4 0.04
50 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:50739404 original size:46 final size:46
Alignment explanation
Indices: 50739229--50739404 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
50739219 TGTAACCCGC
* *
50739229 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
50739275 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
50739321 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
50739368 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
50739405 TGCCTAGTTA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:50741560 original size:93 final size:92
Alignment explanation
Indices: 50741402--50741572 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 92
50741392 GGATGATTGA
*
50741402 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTT
50741467 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
* *
50741494 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
50741558 TTGAGTCCGAGTTCG
64 TTGAGTCCGAGTTCG
50741573 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
92 26 0.35
93 48 0.65
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50741570 original size:46 final size:45
Alignment explanation
Indices: 50741406--50741579 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
50741396 GATTGAGCAT
* *
50741406 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* *
50741450 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G
50741495 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 ---CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* *
50741543 CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50741580 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 25 0.23
46 39 0.35
47 29 0.26
48 3 0.03
50 5 0.05
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
Found at i:50757568 original size:546 final size:544
Alignment explanation
Indices: 50756158--50758514 Score: 2440
Period size: 546 Copynumber: 4.4 Consensus size: 544
50756148 GCGGTTTCAA
* * * *
50756158 CCATTGTGTCATCTTGTAATTTGCTTAAGAATTTTTAATTAGAACTTAATTTAAAGGGGTTAAAT
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAAATAGAACTTAATTTAAAGGGGTTAAAT
* *
50756223 AGTAATTATACCTAGAATATATATATGGTCT-GTTATTGAAGTAAGTTTGTATGCTATATTATAA
66 AGTAATTATACCTAGAATATATA-GTGG-CTGGTTATTGAAGTAAGTATGTATGCTATATTATAA
*
50756287 AACATT-GGTAATTAAAATTATAAAATG-AAATTTTATTAAATAGAACATAAGTGATAATGGGAA
129 AACATTAGG-AATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAA
* * * * *
50756350 TAGGTGG---GAA-AAAAATATTTCCATCTTTTCTTCGTGCAAACCAAATCAAGTGA-GAAATAA
193 TAGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAG-GAGGAAAGAA
* * * * * * * *
50756410 GAGAG-TAACTTCTGTTTTAAGAGTGTAATG-CCAGAAAAATTTTTATTTTTTGAAATGTTAAAA
257 GAGAGAAAAGTTCGGCTTTAAGGGTGTAACGCCCA-AAAAA-TTTT-GTTTTGGAAATGTTAAAA
* * *
50756473 CATGTCAAGCGTGTAACGTTCGACTTTTACAATATTTTTTTATATGAG-AAA--CCGCC---T-C
319 CATGTCAAGGGTGTAACGTTCGACTTTGAAAATA-TTTTTTATATGAGAAAATGCCGCCTGATAC
* * * * *
50756531 -A----T-------TGTGTCGTCTTGTTATAAAAATATTATCATTTTTAACATGAAATTGTTGCG
383 GACGGTTACACCCATCTTTCATCTTATTATAAAAATATTATC-TTTTTATCATGAAATTGTTGCG
* * *
50756584 GAGGCAATTTTAACAAAAAAAAAACTGATATGACAATTTCACCCATTGTGTTATCTTGTTATAAA
447 GAGGCAATTTTAAC-AAAAAAAAACTGATACGACAGTTTCACCCATTGTGTCATCTTGTTATAAA
50756649 ATATTATTATTTTTATCATGAAACTGCTGTAAAC
511 ATATTATTATTTTTATCATGAAACTGCTGTAAAC
* * * *
50756683 CCATTGTGTCATTTTGTAATTTACTTAAGGATTTAT--AT----C-TAATTTAAAGGGGTTAAAC
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAAATAGAACTTAATTTAAAGGGGTTAAAT
* * * *
50756741 AATAATTATACCAATAATATATA-TGGCTGGTTATTAAAGTAAGTATG-A---TATATTATAAAA
66 AGTAATTATACCTAGAATATATAGTGGCTGGTTATTGAAGTAAGTATGTATGCTATATTATAAAA
* * *
50756801 CATTAGTAATTAAAATTATAAAATTAAAATTTAATTAAATAGAACATAAGTGATAATGGAAATAG
131 CATTAGGAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAG
* *
50756866 GTGGCAAAAACAAAAACATTTCCATCTTTTCTTCATGCAAATCGAACCAAGG-GAGAAAGAA-AT
196 GTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGGAG-GAAAGAAGA-
* * * *
50756929 GAGGAACGTTCGGCTTTAAGGGTGTAATGCCCCAAAAAATTTTGTTCTTGGAATTGTTAAAACAT
259 GAGAAAAGTTCGGCTTTAAGGGTGTAACG-CCCAAAAAATTTTGTT-TTGGAAATGTTAAAACAT
* *
50756994 G-CAAGGGTGTAACGTTCGGA-TATGAAAATATTTTCTTATATGAGAAAATGCCGCCTTATACGA
322 GTCAAGGGTGTAACGTTC-GACTTTGAAAATATTTT-TTATATGAGAAAATGCCGCCTGATACGA
* *
50757057 TGGTTACACCCATCCTTTCATCTTATTATAAAAATATTATTCTTTGTATCATGAAATTGTTGCGG
385 CGGTTACACCCAT-CTTTCATCTTATTATAAAAATATTA-TCTTTTTATCATGAAATTGTTGCGG
* * ** * *
50757122 TGACAATTTTAAC-AAAAAAAA-TGATACGAGGGGTTCACCTATTGTGTCATCTTGTTATAAAAT
448 AGGCAATTTTAACAAAAAAAAACTGATACGACAGTTTCACCCATTGTGTCATCTTGTTATAAAAT
* *
50757185 ATTATTATTTTTATCATGGAACTACTGTAAAC
513 ATTATTATTTTTATCATGAAACTGCTGTAAAC
* * * * * *
50757217 CCATTGTGTCATCTTATAATTTGCTGAAGGATTTGTAAATAGAACTTAAGTTAAAAGAGGTTAAA
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAAATAGAACTTAA-TTTAAAGGGGTTAAA
* * *
50757282 TAGTCATTCTACCTAGAATATATA-TGGCTGGTTATTGAAGTTAGTATGTATGCTATATTATAAA
65 TAGTAATTATACCTAGAATATATAGTGGCTGGTTATTGAAGTAAGTATGTATGCTATATTATAAA
*
50757346 ACATTAGGAATTAAAATTATAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATA
130 ACATTAGGAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATA
* *
50757411 GGTGGCAAAAACAAAAACATTTCCATCTTTCCTTGGTGCAAACCGAACCAAGGAGGAAAGAAGAG
195 GGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGGAGGAAAGAAGAG
* ***** * *
50757476 AGAAAAGTTTGGCTTTAAGGGTGTAACGCCCATTTTTTTTTTGTTTTGGAAATGTTAAAATAAGT
260 AGAAAAGTTCGGCTTTAAGGGTGTAACGCCCA-AAAAATTTTGTTTTGGAAATGTTAAAACATGT
* * * * *
50757541 CAAAGGTGTAACGTTCAACTTTGAAAATATTTTTTTATATGAGAAACTGTCGCCTGATTCGACGG
324 CAAGGGTGTAACGTTCGACTTTGAAAATA-TTTTTTATATGAGAAAATGCCGCCTGATACGACGG
* * * * * * *
50757606 TTTCACCCAT-TGTGACATTTTATTATAAAAATAGTATTATTTTTATCATGAAATCGTTGCAGAG
388 TTACACCCATCT-T-TCATCTTATTATAAAAATATTA-TCTTTTTATCATGAAATTGTTGCGGAG
* * ** *
50757670 GCAATTTTAACAAAAAAAATATAAATATATATTACGACAGTTTCACCTTTTGTGTTATCTTGTTA
450 GCAATTTTAAC---AAAAA-A-AAA-CT-GA-TACGACAGTTTCACCCATTGTGTCATCTTGTTA
* * * *
50757735 TAAATTATTATTATTTTTATTATGAAATTGCTATAAAC
507 TAAAATATTATTATTTTTATCATGAAACTGCTGTAAAC
* * * *
50757773 TCATTGTATCATCTTGTAATTTGCTTAAGGATGTATAATTAAAACTTAATTTAAAGGGGTTAAAT
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAAATAGAACTTAATTTAAAGGGGTTAAA-
* * *
50757838 TA-TAATTATACCTAGAATATATATGTGGCGGGCTATTGAAGTAAGTATGTATGTTATATTATAA
65 TAGTAATTATACCTAGAATATATA-GTGGCTGGTTATTGAAGTAAGTATGTATGCTATATTATAA
*** * *
50757902 AACACCCGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATATGTGATAATGGGAAT
129 AACATTAGGAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAAT
* * * * ** * *
50757967 AGGTGGCAAAAGCAAAGACATTTCCATCTTTTCTTTGTGCAAACCGAACCAAGCAATAAGGAAGT
194 AGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGGAGGAAAGAAGA
* * ** **
50758032 GAGGAACA-TTCGGCTTTAAGGGTGTAATGCCCCCAAAAAATCGT-TTTTGGAGGTGTTAAAACA
259 GA-GAAAAGTTCGGCTTTAAGGGTGTAA--CGCCCAAAAAATTTTGTTTTGGAAATGTTAAAACA
* * * * * * *
50758095 TGTCAAGGGTATAATGTTCGGCTTTTTAAAAATATTTTTTATATGAGAAATTGCCACCTGATATG
321 TGTCAAGGGTGTAACGTTCGAC--TTTGAAAATATTTTTTATATGAGAAAATGCCGCCTGATACG
* * * * * * * *
50758160 ACGATTCCACGCATTTTGTCGTCTTGTTAT--AAA-ATTA--TTATTATCATGAAATTGTTGCCG
384 ACGGTTACACCCATCTT-TCATCTTATTATAAAAATATTATCTTTTTATCATGAAATTGTTGCGG
* ** * * * * *
50758220 TGGCAATTTTAATTAAAAAAAATTGATACAACGGTTTCACCCATTGTGCCATCTTATTATAAAAT
448 AGGCAATTTTAACAAAAAAAAACTGATACGACAGTTTCACCCATTGTGTCATCTTGTTATAAAAT
* * * *
50758285 ATTATTATTATTATCATGAAACCGTTGTAGAC
513 ATTATTATTTTTATCATGAAACTGCTGTAAAC
* * *
50758317 CCATTGTATCATCTTGTAACTTGCTTAAAGATTTATAATTAGAACTTAATTTAAAGGGGTTAAAT
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAAATAGAACTTAATTTAAAGGGGTTAAAT
* * *
50758382 AGTACTTCTACCTA-ATATATATATGTGGCAT-GTTATTGAAGCAAGTATGTATGCTATATTATA
66 AGTAATTATACCTAGA-ATATATA-GTGGC-TGGTTATTGAAGTAAGTATGTATGCTATATTATA
* *
50758445 AAACATTAGTG-ATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATATGTGATAATGAGA
128 AAACATTAG-GAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGA
50758509 ATAGGT
192 ATAGGT
50758515 TTTTTCGTGC
Statistics
Matches: 1532, Mismatches: 220, Indels: 141
0.81 0.12 0.07
Matches are distributed among these distances:
512 33 0.02
513 42 0.03
515 3 0.00
516 27 0.02
517 77 0.05
518 83 0.05
519 6 0.00
520 8 0.01
523 2 0.00
524 1 0.00
525 33 0.02
529 1 0.00
534 96 0.06
535 8 0.01
536 3 0.00
537 53 0.03
538 2 0.00
540 1 0.00
541 3 0.00
542 53 0.03
543 4 0.00
544 232 0.15
545 23 0.02
546 272 0.18
547 9 0.01
548 1 0.00
549 4 0.00
550 4 0.00
551 1 0.00
552 34 0.02
554 1 0.00
555 36 0.02
556 106 0.07
557 202 0.13
558 53 0.03
559 15 0.01
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (544 bp):
CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAAATAGAACTTAATTTAAAGGGGTTAAAT
AGTAATTATACCTAGAATATATAGTGGCTGGTTATTGAAGTAAGTATGTATGCTATATTATAAAA
CATTAGGAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAG
GTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGGAGGAAAGAAGAGA
GAAAAGTTCGGCTTTAAGGGTGTAACGCCCAAAAAATTTTGTTTTGGAAATGTTAAAACATGTCA
AGGGTGTAACGTTCGACTTTGAAAATATTTTTTATATGAGAAAATGCCGCCTGATACGACGGTTA
CACCCATCTTTCATCTTATTATAAAAATATTATCTTTTTATCATGAAATTGTTGCGGAGGCAATT
TTAACAAAAAAAAACTGATACGACAGTTTCACCCATTGTGTCATCTTGTTATAAAATATTATTAT
TTTTATCATGAAACTGCTGTAAAC
Found at i:50758009 original size:557 final size:550
Alignment explanation
Indices: 50756530--50758879 Score: 2239
Period size: 546 Copynumber: 4.4 Consensus size: 550
50756520 GAAACCGCCT
* * * * *
50756530 CATTGTGTCGTCTTGTTATAAAAATATTATCATTTTTAACATGAAATTGTTGCGGAGGCAATTTT
1 CATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCGGAGGCAATTTT
* * * *
50756595 AACAAAAAAAAAACT-GATAT--GACAATTTCACCCATTGTGTTATCTTGTTATAAAATATTATT
66 AACAAAAAAAAAAATATATATACGACAGTTTCACCCATTGTGTCATCTTGTTATAAAATATTATT
* * *
50756657 ATTTTTATCATGAAACTGCTGTAAACCCATTGTGTCATTTTGTAATTTACTTAAGGATTTAT-A-
131 ATTTTTATCATGAAACTGCTGTAAACCCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAAT
* * * * *
50756720 T----C-TAATTTAAAGGGGTTAAACAATAATTATACCAATAATATATATGGCTGGTTATTAAAG
196 TAGAACTTAATTTAAAGGGGTTAAATAGTAATTATACCTAGAATATATATGGCTGGTTATTGAAG
*
50756780 TAAGTATG-A---TATATTATAAAACATTAGTAATTAAAATTATAAAATTAAAATTTAATTAAAT
261 TAAGTATGTATGCTATATTATAAAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAAT
* *
50756841 AGAACATAAGTGATAATGGAAATAGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCATGCAA
326 AGAACATAAGTGATAATGGGAATAGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAA
* * * *
50756906 ATCGAACCAAGG-GAGAAAGAA-ATGAGGAACGTTCGGCTTTAAGGGTGTAATGCCCCAAAAAAT
391 ACCGAACCAAGGAG-GAAAGAAGA-GAGAAAAGTTCGGCTTTAAGGGTGTAACG-CCCAAAAAAT
* * *
50756969 TTTGTTCTTGGAATTGTTAAAACATG-CAAGGGTGTAACGTTCGGA-TATGAAAATATTTTCTTA
453 TTTGTT-TTGGAAATGTTAAAACATGTCAAGGGTGTAACGTTC-GACTTTGAAAATATTTTTTTA
* * *
50757032 TATGAGAAAATGCCGCCTTATACGATGGTTACACC
516 TATGAGAAAATGCCGCCTGATTCGACGGTTACACC
* * * * * *
50757067 CATCCTTTCATCTTATTATAAAAATATTATTCTTTGTATCATGAAATTGTTGCGGTGACAATTTT
1 CATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCGGAGGCAATTTT
* ** * *
50757132 AAC----AAAAAAA-AT-GATACGAGGGGTTCACCTATTGTGTCATCTTGTTATAAAATATTATT
66 AACAAAAAAAAAAATATATATACGACAGTTTCACCCATTGTGTCATCTTGTTATAAAATATTATT
* * * * * * *
50757191 ATTTTTATCATGGAACTACTGTAAACCCATTGTGTCATCTTATAATTTGCTGAAGGATTTGTAAA
131 ATTTTTATCATGAAACTGCTGTAAACCCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAAT
* * * *
50757256 TAGAACTTAAGTTAAAAGAGGTTAAATAGTCATTCTACCTAGAATATATATGGCTGGTTATTGAA
196 TAGAACTTAA-TTTAAAGGGGTTAAATAGTAATTATACCTAGAATATATATGGCTGGTTATTGAA
* * *
50757321 GTTAGTATGTATGCTATATTATAAAACATTAGGAATTAAAATTATAAAATGAAATTTTAATTAAA
260 GTAAGTATGTATGCTATATTATAAAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAA
* *
50757386 TAGAACATAAGTGATAATGGGAATAGGTGGCAAAAACAAAAACATTTCCATCTTTCCTTGGTGCA
325 TAGAACATAAGTGATAATGGGAATAGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCA
* *****
50757451 AACCGAACCAAGGAGGAAAGAAGAGAGAAAAGTTTGGCTTTAAGGGTGTAACGCCCATTTTTTTT
390 AACCGAACCAAGGAGGAAAGAAGAGAGAAAAGTTCGGCTTTAAGGGTGTAACGCCCA-AAAAATT
* * * *
50757516 TTGTTTTGGAAATGTTAAAATAAGTCAAAGGTGTAACGTTCAACTTTGAAAATATTTTTTTATAT
454 TTGTTTTGGAAATGTTAAAACATGTCAAGGGTGTAACGTTCGACTTTGAAAATATTTTTTTATAT
* * *
50757581 GAGAAACTGTCGCCTGATTCGACGGTTTCACC
519 GAGAAAATGCCGCCTGATTCGACGGTTACACC
* * * * * *
50757613 CATTGTGACATTTTATTATAAAAATAGTATTATTTTTATCATGAAATCGTTGCAGAGGCAATTTT
1 CATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCGGAGGCAATTTT
** * *
50757678 AACAAAAAAAATATAAATATATATTACGACAGTTTCACCTTTTGTGTTATCTTGTTATAAATTAT
66 AAC-AAAAAAA-A-AAATATATA-TACGACAGTTTCACCCATTGTGTCATCTTGTTATAAAATAT
* * * * *
50757743 TATTATTTTTATTATGAAATTGCTATAAACTCATTGTATCATCTTGTAATTTGCTTAAGGATGTA
127 TATTATTTTTATCATGAAACTGCTGTAAACCCATTGTATCATCTTGTAATTTGCTTAAGGATTTA
* * *
50757808 TAATTAAAACTTAATTTAAAGGGGTTAAATTA-TAATTATACCTAGAATATATATGTGGCGGGCT
192 TAATTAGAACTTAATTTAAAGGGGTTAAA-TAGTAATTATACCTAGAATATATA--TGGCTGGTT
* ***
50757872 ATTGAAGTAAGTATGTATGTTATATTATAAAACACCCGTAATTAAAATTATAAAATGAAAATTTA
254 ATTGAAGTAAGTATGTATGCTATATTATAAAACATTAGTAATTAAAATTATAAAATGAAAATTTA
* * *
50757937 ATTAAATAGAACATATGTGATAATGGGAATAGGTGGCAAAAGCAAAGACATTTCCATCTTTTCTT
319 ATTAAATAGAACATAAGTGATAATGGGAATAGGTGGCAAAAACAAAAACATTTCCATCTTTTCTT
* * ** * * * *
50758002 TGTGCAAACCGAACCAAGCAATAAGGAAGTGAGGAACA-TTCGGCTTTAAGGGTGTAATGCCCCC
384 CGTGCAAACCGAACCAAGGAGGAAAGAAGAGA-GAAAAGTTCGGCTTTAAGGGTGTAA--CGCCC
** ** * * * *
50758066 AAAAAATCGT-TTTTGGAGGTGTTAAAACATGTCAAGGGTATAATGTTCGGCTTTTTAAAA-ATA
446 AAAAAATTTTGTTTTGGAAATGTTAAAACATGTCAAGGGTGTAACGTTCGAC-TTTGAAAATAT-
* * * * *
50758129 TTTTTTATATGAGAAATTGCCACCTGATAT-GACGATTCCACG
509 TTTTTTATATGAGAAAATGCCGCCTGAT-TCGACGGTTACACC
* * * * *
50758171 CATTTTGTCGTCTTGTTAT--AAA-ATTATTA---TTATCATGAAATTGTTGCCGTGGCAATTTT
1 CATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCGGAGGCAATTTT
** * * * * *
50758230 -A-ATTAAAAAAAAT-T-GATACAACGGTTTCACCCATTGTGCCATCTTATTATAAAATATTATT
66 AACAAAAAAAAAAATATATATACGACAGTTTCACCCATTGTGTCATCTTGTTATAAAATATTATT
* * * * * *
50758291 ATTATTATCATGAAACCGTTGTAGACCCATTGTATCATCTTGTAACTTGCTTAAAGATTTATAAT
131 ATTTTTATCATGAAACTGCTGTAAACCCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAAT
* *
50758356 TAGAACTTAATTTAAAGGGGTTAAATAGTACTTCTACCTA-ATATATATATGTGGCAT-GTTATT
196 TAGAACTTAATTTAAAGGGGTTAAATAGTAATTATACCTAGA-ATATATA--TGGC-TGGTTATT
* *
50758419 GAAGCAAGTATGTATGCTATATTATAAAACATTAGTGATTAAAATTATAAAATGAAAATTTAATT
257 GAAGTAAGTATGTATGCTATATTATAAAACATTAGTAATTAAAATTATAAAATGAAAATTTAATT
* *
50758484 AAATAGAACATATGTGATAATGAGAATA---GG----------------------TTTT-TTCGT
322 AAATAGAACATAAGTGATAATGGGAATAGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGT
*** * * * * *
50758523 GCAAATAAAACTAAGG-GACAAAGAAGAGAGGAACGTTTC-ACTTTAAGGGTGTAACGCCTC--A
387 GCAAACCGAACCAAGGAG-GAAAGAAGAGAGAAAAG-TTCGGCTTTAAGGGTGTAACGCC-CAAA
* * *
50758584 AAATTTT-TTTTAAGAAATGTTAAAACATGTCAAGGGTGTAATGTTCGGCTTTGAAAATATTTTT
449 AAATTTTGTTTT-GGAAATGTTAAAACATGTCAAGGGTGTAACGTTCGACTTTGAAAATA-TTTT
* * * * ** *
50758648 TTTATATGAGAAACTGCCGCCTGGTACAACAATTGCACC
512 TTTATATGAGAAAATGCCGCCTGATTCGACGGTTACACC
* * * * * * * **
50758687 CATTGTATCGTCTTAATATAAAAATATTATTCTTTTTATCATGAAATTATTGCTGAAACAATTTT
1 CATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCGGAGGCAATTTT
* * * * *
50758752 ----AATAAAAAAA-CT-GATACGAC-GATTTCATCTA-T-TG------TG-TATAAAATATTAT
66 AACAAAAAAAAAAATATATATACGACAG-TTTCACCCATTGTGTCATCTTGTTATAAAATATTAT
* * *
50758801 TATTTTTATCATGAAACTGCTATAAACCCATTGTATCATCTTGTAATTTGGTTAAGAATTTATAA
130 TATTTTTATCATGAAACTGCTGTAAACCCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAA
50758866 TTAGAACTTAATTT
195 TTAGAACTTAATTT
50758880 TAGAACTTAA
Statistics
Matches: 1508, Mismatches: 247, Indels: 142
0.79 0.13 0.07
Matches are distributed among these distances:
511 83 0.06
512 1 0.00
515 17 0.01
516 85 0.06
517 4 0.00
518 42 0.03
519 15 0.01
520 22 0.01
522 25 0.02
532 2 0.00
533 6 0.00
534 91 0.06
535 1 0.00
536 1 0.00
537 57 0.04
540 1 0.00
541 5 0.00
542 53 0.04
543 4 0.00
544 229 0.15
545 22 0.01
546 277 0.18
547 6 0.00
548 1 0.00
549 5 0.00
551 4 0.00
552 28 0.02
553 3 0.00
554 2 0.00
555 39 0.03
556 106 0.07
557 204 0.14
558 61 0.04
559 6 0.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (550 bp):
CATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCGGAGGCAATTTT
AACAAAAAAAAAAATATATATACGACAGTTTCACCCATTGTGTCATCTTGTTATAAAATATTATT
ATTTTTATCATGAAACTGCTGTAAACCCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAAT
TAGAACTTAATTTAAAGGGGTTAAATAGTAATTATACCTAGAATATATATGGCTGGTTATTGAAG
TAAGTATGTATGCTATATTATAAAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAAT
AGAACATAAGTGATAATGGGAATAGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAA
ACCGAACCAAGGAGGAAAGAAGAGAGAAAAGTTCGGCTTTAAGGGTGTAACGCCCAAAAAATTTT
GTTTTGGAAATGTTAAAACATGTCAAGGGTGTAACGTTCGACTTTGAAAATATTTTTTTATATGA
GAAAATGCCGCCTGATTCGACGGTTACACC
Found at i:50758882 original size:13 final size:13
Alignment explanation
Indices: 50758866--50758892 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50758856 GAATTTATAA
50758866 TTAGAACTTAATT
1 TTAGAACTTAATT
50758879 TTAGAACTTAATT
1 TTAGAACTTAATT
50758892 T
1 T
50758893 AAAGGGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TTAGAACTTAATT
Found at i:50759020 original size:33 final size:33
Alignment explanation
Indices: 50758972--50759037 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
50758962 CGGAGTTAAA
50758972 TTTTGTCATGCATTTTTAAATTGTATTTAGAAT
1 TTTTGTCATGCATTTTTAAATTGTATTTAGAAT
* *
50759005 TTTTTTCATGTATTTTTAAATTGTATTTAGAAT
1 TTTTGTCATGCATTTTTAAATTGTATTTAGAAT
50759038 ATTAAAAAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.58
Consensus pattern (33 bp):
TTTTGTCATGCATTTTTAAATTGTATTTAGAAT
Found at i:50762038 original size:32 final size:32
Alignment explanation
Indices: 50761973--50762041 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
50761963 TTATGGGCCT
* * * *
50761973 ACACGCCCAGATTGGCTTTGCCCGTGTGGCCC
1 ACACGCCCAGATTGGCCTAGCCCATGTGACCC
* *
50762005 ACACGCCCAGCTTGGCCTAGTCCATGTGACCC
1 ACACGCCCAGATTGGCCTAGCCCATGTGACCC
50762037 ACACG
1 ACACG
50762042 GCCACACCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.17, C:0.39, G:0.25, T:0.19
Consensus pattern (32 bp):
ACACGCCCAGATTGGCCTAGCCCATGTGACCC
Found at i:50773228 original size:42 final size:42
Alignment explanation
Indices: 50773128--50773275 Score: 192
Period size: 43 Copynumber: 3.5 Consensus size: 42
50773118 CTAAGACTAC
* * *
50773128 GTGTAACACCATATCTGGGATAAGACATCG-TATGAGATTTT
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTT
50773169 -TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTT
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTT
* * **
50773210 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATTAC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTT
* *
50773253 ATGTAAGACCATATATGGGATAT
1 GTGTAAGACCATATCTGGGATAT
50773276 TGTGTTGGTA
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
40 26 0.28
41 11 0.12
42 20 0.22
43 36 0.39
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTT
Found at i:50784924 original size:17 final size:18
Alignment explanation
Indices: 50784898--50784940 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
50784888 CAACGGGTAG
*
50784898 GAGAATATAA-CAAAAAA
1 GAGAAAATAATCAAAAAA
* *
50784915 GAGAAAATAATGAAAATA
1 GAGAAAATAATCAAAAAA
50784933 GAGAAAAT
1 GAGAAAAT
50784941 GGAGAAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.67, C:0.02, G:0.16, T:0.14
Consensus pattern (18 bp):
GAGAAAATAATCAAAAAA
Found at i:50787453 original size:46 final size:45
Alignment explanation
Indices: 50787403--50787578 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
50787393 TGGTTGAGCA
*
50787403 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
50787449 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
50787496 TCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
50787542 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50787579 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:50787559 original size:93 final size:93
Alignment explanation
Indices: 50787400--50787570 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
50787390 GGATGGTTGA
* * *
50787400 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
50787465 TGAGTTCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
50787493 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50787558 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50787571 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:50790579 original size:30 final size:30
Alignment explanation
Indices: 50790501--50790588 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
50790491 CATAGTATCG
* * *
50790501 TATCTTGGGTTTCTTTATCCTGGATCTT-TT
1 TATCTTGGATTTCTTTATTCTGGAT-TTCTC
*
50790531 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
50790561 TATCTTGGATTTCTTTATT-TGGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
50790589 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 11 0.22
30 38 0.76
31 1 0.02
ACGTcount: A:0.10, C:0.15, G:0.16, T:0.59
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:50790587 original size:14 final size:15
Alignment explanation
Indices: 50790510--50790589 Score: 85
Period size: 15 Copynumber: 5.4 Consensus size: 15
50790500 GTATCTTGGG
*
50790510 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
50790525 TCTT-TTTATTCTGGA
1 T-TTCTTTATTCTGGA
*
50790540 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
50790555 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
50790570 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
50790584 TTTCTT
1 TTTCTT
50790590 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
14 13 0.24
15 39 0.71
16 3 0.05
ACGTcount: A:0.10, C:0.15, G:0.14, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:50792879 original size:46 final size:46
Alignment explanation
Indices: 50792823--50792998 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
50792813 TGGTTGAGCA
* *
50792823 TCCGAACTCGTTGAGTTGAGTCTGAGCTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
50792869 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
50792916 TCCGAGCTCATTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
50792962 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50792999 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 64 0.61
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50792979 original size:93 final size:93
Alignment explanation
Indices: 50792820--50792990 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
50792810 GGATGGTTGA
* *
50792820 GCATCCGAACTCGTTGAGTTGAGTCTGAGCTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
50792885 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
50792913 GCATCCGAGCTCATTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATGTC-CGAACTCGTTGAG
50792977 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
50792991 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:50795861 original size:30 final size:26
Alignment explanation
Indices: 50795819--50795888 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 26
50795809 GTAAATTATC
*
50795819 AAAAAAATAAAGAACGCCAAGAAGAAAAA
1 AAAAAAAAAAAGAA-G--AAGAAGAAAAA
*
50795848 AAAAAAGAAAAAGAAGAAGAAGAAGAA
1 AAAAAA-AAAAAGAAGAAGAAGAAAAA
*
50795875 AGAAAAAAAAAGAA
1 AAAAAAAAAAAGAA
50795889 TGGGAGTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
26 8 0.22
27 15 0.41
29 7 0.19
30 7 0.19
ACGTcount: A:0.77, C:0.04, G:0.17, T:0.01
Consensus pattern (26 bp):
AAAAAAAAAAAGAAGAAGAAGAAAAA
Found at i:50797636 original size:40 final size:40
Alignment explanation
Indices: 50797588--50797705 Score: 132
Period size: 40 Copynumber: 3.0 Consensus size: 40
50797578 TAAAAAAACG
50797588 CCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATA
1 CCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATA
* * * ** **
50797628 CCGCTATAGATCAAGTATTAGTGG-GCTTTTCAAAAAACG
1 CCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATA
* *
50797667 CCGCTATA-AGTCGACCTTTAGCGGCGCTTTTTGAAAAAT
1 CCGCTATAGA-TCGAGCATTAGCGGCGCTTTTTGAAAAAT
50797706 GCCGTAAAAA
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
38 1 0.02
39 28 0.46
40 32 0.52
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (40 bp):
CCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATA
Found at i:50797898 original size:40 final size:40
Alignment explanation
Indices: 50797759--50797890 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 40
50797749 GTAGCGGCAC
* *
50797759 TAGCGGCGCTTTTTGAAAAACGCTGCTATAGATTGAGCAT
1 TAGCGGCGCTTTTTAAAAAACGCCGCTATAGATTGAGCAT
** * * * * *
50797799 TAGCAACGCTTTTTAAAAAATGCCACTATAGGTTGACCAC
1 TAGCGGCGCTTTTTAAAAAACGCCGCTATAGATTGAGCAT
* * * *
50797839 TAGTGGCGCTTTTTTAAAAACGCCGCTATAGATCGAGCTT
1 TAGCGGCGCTTTTTAAAAAACGCCGCTATAGATTGAGCAT
*
50797879 TAGCGTCGCTTT
1 TAGCGGCGCTTT
50797891 ATCAAAAATG
Statistics
Matches: 70, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (40 bp):
TAGCGGCGCTTTTTAAAAAACGCCGCTATAGATTGAGCAT
Found at i:50797970 original size:21 final size:21
Alignment explanation
Indices: 50797945--50797985 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
50797935 TAACTGGTTT
50797945 ATTTA-TATTAATTGAAATACA
1 ATTTATTATTAATT-AAATACA
*
50797966 ATTTATTTTTAATTAAATAC
1 ATTTATTATTAATTAAATAC
50797986 TTAAATTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTTATTATTAATTAAATACA
Found at i:50798160 original size:14 final size:14
Alignment explanation
Indices: 50798141--50798190 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
50798131 TTAATTATCA
50798141 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
50798155 TTATAGTTTAGGAT
1 TTATAGTTTAGGGT
* *
50798169 GTATGGTTTAGGGT
1 TTATAGTTTAGGGT
50798183 TTA-AGTTT
1 TTATAGTTT
50798191 TAAAAGTTAC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 4 0.13
14 26 0.87
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:50798266 original size:14 final size:15
Alignment explanation
Indices: 50798249--50798281 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
50798239 TATGGTTTAC
50798249 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
50798263 GGTTTAAGGTTTAGG
1 GGTTTAAGGGTTAGG
50798278 GGTT
1 GGTT
50798282 ATATATGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.39
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:50798266 original size:21 final size:21
Alignment explanation
Indices: 50798242--50798281 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50798232 TAGAGATTAT
*
50798242 GGTTTACGGTTTAAGGGTTGG
1 GGTTTAAGGTTTAAGGGTTGG
*
50798263 GGTTTAAGGTTTAGGGGTT
1 GGTTTAAGGTTTAAGGGTT
50798282 ATATATGGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.03, G:0.42, T:0.40
Consensus pattern (21 bp):
GGTTTAAGGTTTAAGGGTTGG
Found at i:50798730 original size:21 final size:21
Alignment explanation
Indices: 50798706--50798752 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
50798696 TTAGGGAGTA
50798706 GGTTTATGGTATAAGATTTAG
1 GGTTTATGGTATAAGATTTAG
* * *
50798727 GGTTTATGGTCTAGGATTTGG
1 GGTTTATGGTATAAGATTTAG
50798748 GGTTT
1 GGTTT
50798753 GGTGTTTGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.02, G:0.34, T:0.45
Consensus pattern (21 bp):
GGTTTATGGTATAAGATTTAG
Found at i:50803806 original size:43 final size:43
Alignment explanation
Indices: 50803745--50803858 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 43
50803735 ATATTTATTT
* *
50803745 TTAAAGGTCATGTTCTTTAGTGGAGTTTATGGGAAAAGAGTCG
1 TTAAAGGTCATGTTCTTTAGCGGAGTTTATGGGAAAAGAGCCG
* * *
50803788 TTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG
1 TTAAAGGTCATGTTCTTTAGCGGAGTTTATGGGAAAAGAGCCG
* * * *
50803831 CTAAAGATCATGTTCTATAGCGGCGTTT
1 TTAAAGGTCATGTTCTTTAGCGGAGTTT
50803859 TTTTACATAA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (43 bp):
TTAAAGGTCATGTTCTTTAGCGGAGTTTATGGGAAAAGAGCCG
Found at i:50805915 original size:552 final size:549
Alignment explanation
Indices: 50804592--50806043 Score: 1700
Period size: 545 Copynumber: 2.6 Consensus size: 549
50804582 CGGTTTCACT
* * * * *
50804592 CATTGTGTCACCTTGTAATTTGCTTAAGAATTTATAATTAGATCTTACTTTAAAGGGGCTAAATA
1 CATTGTGTCATCTTGTAATTTGCTTAAGAATTTATAATTAGAACTTAATTTAAAGAGGTTAAATA
* *
50804657 GTAATTATACCTAG-A-ATATATATGGCTGGTTATTGAAGTAAGTATGTATGTTATATTATAAAA
66 GTAATTATACCTAGAATATATATATGGCCGGTTATTGAAG-AAGTATGTATGTTATATTAAAAAA
* * * * * * *
50804720 CGTTAGTCATTAAAATTAGAAAATGAAATTTTAATTAAATAGAACATAAGTGATTATGGGAATAG
130 CATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAAAATAAGTAATAATGGGAATAG
* *
50804785 GTGGCAAAAACAAAAAACATTTCCATCTTTTT-TTCGTGCAAACCGAACTAA-AGGAAATAATAG
195 GTGGCAAAAAC-AAAAACATTTCCAT-TTTTTCTTCGTGCAAACCAAACCAAGAGGAAAT-A-AG
* * *
50804848 AAATG-ACGTTCGGCTTTAAGGGTGTAACACCCCAAAAATTTTTGTTCTTGGAATTGTTAAAACA
256 AGATGAACGTTCGGCTTTAAAGGTGTAACACCCCAAAAATTTTTGTTATTGGAA-TGTTAAAACA
* * * * * *
50804912 TGTCAAGGGTGTAACATTTGGCTTCGAAAATATTTTTTTATATGAGAATTTGCCGCATGATACGA
320 TGTCAAGGGTGTAACATTCGGCTTTGAAAATATTTATATATATGAGAACTTGCCGCATGATACAA
*
50804977 TGGTTACACCCACTGTGTCGTTCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAG
385 CGGTTACACCCACTGTGTCGTTCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAG
* * * * *
50805042 ATGAAATTTTAACAATAAAAAAAACTGATACGACGGTTTCACCAATTATGTCATTTTGTTATAAA
450 AGGAAATTTAAACAATAAAAAAAACTGATACGACGATTTCACCAATTATGTCATCTTGTCATAAA
* *
50805107 ATATTATTATTTTTATCATGTAACTGCTTTAAACC
515 ATATTATCATTTTTATCATGAAACTGCTTTAAACC
* * * * * * * * *
50805142 TA-T-TGTCGTCTTATAATTTACTTAAGGATTTAAAATTAGAATTTAACTTAAA-AGGGTTGAAT
1 CATTGTGTCATCTTGTAATTTGCTTAAGAATTTATAATTAGAACTTAATTTAAAGA-GGTTAAAT
* * * *
50805204 AG-ACCTTCTACCTAGAATAT-T-TATGGCCGATTATT---GAAGTATGTATGCTATATTAAAAA
65 AGTA-ATTATACCTAGAATATATATATGGCCGGTTATTGAAGAAGTATGTATGTTATATT-AAAA
* * *
50805263 AACATTAGTAATTAAAATTATAAAATGAAAACTTAATTAAATAAAAAATAAGTAATAATGGAAAT
128 AACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAAAATAAGTAATAATGGGAAT
* * * * *
50805328 AGGTGGCAAAAACAAAAATATTTTCATCTTTTCTTCGTGCAAATCAAACCAAGTAAGAAATAAGA
193 AGGTGGCAAAAACAAAAACATTTCCATTTTTTCTTCGTGCAAACCAAACCAAG-AGGAAATAAGA
* * * * * * *
50805393 GATGAAGGTTCAGTTTTAATGGTGTAACGCCACAAAAATTTTTGTT-TTCGGATATGTTAAAAGA
257 GATGAACGTTCGGCTTTAAAGGTGTAACACCCCAAAAATTTTTGTTATT-GGA-ATGTTAAAACA
* * * *
50805457 TGTCAAGGGTGTAACCTTCGGCTTTGAAAATATATATATATATATGAGAACTTGTCGCTTGATTC
320 TGTCAAGGGTGTAACATTCGGCTTTGAAAATAT-T-TATATATATGAGAACTTGCCGCATGATAC
* * *
50805522 AACGGTTTCACCCATTGTGTTG-TCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTG
383 AACGGTTACACCCACTGTGTCGTTC-TATTATAAAAATATTATTATTTTTATCATGAAATTGTTG
** * ** * * * *
50805586 TGGAGGCAATTTAAAC-A-AAAAAAATTTGATACGACTATTTTACCCATTGTGTCATCTTGTCAT
447 CAGAGGAAATTTAAACAATAAAAAAAACTGATACGACGATTTCACCAATTATGTCATCTTGTCAT
*
50805649 AAAATATTATCATTTTTATCATGAAAGTG-TTGTAAACC
512 AAAATATTATCATTTTTATCATGAAACTGCTT-TAAACC
*
50805687 CATTGTGTCATCTTGTAATTTGCTTAAGAATGTATAATTAGAACTTAATTTAAAGAGGTTAAATA
1 CATTGTGTCATCTTGTAATTTGCTTAAGAATTTATAATTAGAACTTAATTTAAAGAGGTTAAATA
* * * * *
50805752 GTAATTATATCAAGAATATATATATAGCGGGCTATTGAAGCAAGTATGTATGTTATATTAAAAAA
66 GTAATTATACCTAGAATATATATATGGCCGGTTATTGAAG-AAGTATGTATGTTATATTAAAAAA
* *
50805817 CATTAGTAATTGAAATTATAAAATGAAAATTTAATTAAATAGAATATAAGTAATAATGGGAATAG
130 CATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAAAATAAGTAATAATGGGAATAG
* * * *
50805882 GTGGAAAAAACAAAAACATATCCATTTTTTCTTCGTGCAAACCAAACCAAGGGGGAAAGAAGAGA
195 GTGGCAAAAACAAAAACATTTCCATTTTTTCTTCGTGCAAACCAAACCAA-GAGGAAATAAGAGA
* ** * * *
50805947 GGAATATTCGGCTTTAAAGGAGTAACACCCCAAAATTTTTTGTTATTGGAAATGTTAAAATATGT
259 TGAACGTTCGGCTTTAAAGGTGTAACACCCCAAAAATTTTTGTTATTGG-AATGTTAAAACATGT
* * * *
50806012 CAAAGATGTAATATTCGGCTTTAAAAATATTT
323 CAAGGGTGTAACATTCGGCTTTGAAAATATTT
50806044 TTTTATATAA
Statistics
Matches: 749, Mismatches: 125, Indels: 56
0.81 0.13 0.06
Matches are distributed among these distances:
543 4 0.01
544 55 0.07
545 220 0.29
546 12 0.02
547 153 0.20
548 71 0.09
549 13 0.02
550 4 0.01
551 1 0.00
552 195 0.26
553 21 0.03
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.35
Consensus pattern (549 bp):
CATTGTGTCATCTTGTAATTTGCTTAAGAATTTATAATTAGAACTTAATTTAAAGAGGTTAAATA
GTAATTATACCTAGAATATATATATGGCCGGTTATTGAAGAAGTATGTATGTTATATTAAAAAAC
ATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAAAATAAGTAATAATGGGAATAGG
TGGCAAAAACAAAAACATTTCCATTTTTTCTTCGTGCAAACCAAACCAAGAGGAAATAAGAGATG
AACGTTCGGCTTTAAAGGTGTAACACCCCAAAAATTTTTGTTATTGGAATGTTAAAACATGTCAA
GGGTGTAACATTCGGCTTTGAAAATATTTATATATATGAGAACTTGCCGCATGATACAACGGTTA
CACCCACTGTGTCGTTCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAGAGGAAA
TTTAAACAATAAAAAAAACTGATACGACGATTTCACCAATTATGTCATCTTGTCATAAAATATTA
TCATTTTTATCATGAAACTGCTTTAAACC
Done.