Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 162 of 295
Found at i:50807206 original size:25 final size:25
Alignment explanation
Indices: 50807172--50807221 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
50807162 TTTTCTTGCT
50807172 TCAAACCGAACCAAGGGAAAAAGAA
1 TCAAACCGAACCAAGGGAAAAAGAA
50807197 TCAAACCGAACCAAGGGAAAAAGAA
1 TCAAACCGAACCAAGGGAAAAAGAA
50807222 GAGGGAAACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.56, C:0.20, G:0.20, T:0.04
Consensus pattern (25 bp):
TCAAACCGAACCAAGGGAAAAAGAA
Found at i:50808945 original size:44 final size:44
Alignment explanation
Indices: 50808876--50808961 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
50808866 TTTATTATTT
50808876 ATAGAAACAAAAAAAAATAAAGTTTTGTGTTTGAACTTCAACGGC
1 ATAGAAACAAAAAAAAATAAAGTTTTGTGTTTG-ACTTCAACGGC
*
50808921 ATAGAAAC-AAAACAAATAAAGTTTTGTGTTTGACTTCAACG
1 ATAGAAACAAAAAAAAATAAAGTTTTGTGTTTGACTTCAACG
50808962 TAAAGAACAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
43 9 0.22
44 23 0.57
45 8 0.20
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (44 bp):
ATAGAAACAAAAAAAAATAAAGTTTTGTGTTTGACTTCAACGGC
Found at i:50810023 original size:23 final size:23
Alignment explanation
Indices: 50809997--50810041 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
50809987 ACAAACATCG
50809997 ATGCATAACAAATACAGATTCAT
1 ATGCATAACAAATACAGATTCAT
* **
50810020 ATGCATATCAGTTACAGATTCA
1 ATGCATAACAAATACAGATTCA
50810042 GATCCTACCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (23 bp):
ATGCATAACAAATACAGATTCAT
Found at i:50810480 original size:30 final size:30
Alignment explanation
Indices: 50810424--50810480 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
50810414 TGGGTATTTT
* * * *
50810424 CACACGGGCTGGGCACATGCCTATGTGAAC
1 CACACGGGCTAGCCACACGCCCATGTGAAC
50810454 CACACGGGCTAGCCACACGCCCATGTG
1 CACACGGGCTAGCCACACGCCCATGTG
50810481 CCAGCCCATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.23, C:0.35, G:0.28, T:0.14
Consensus pattern (30 bp):
CACACGGGCTAGCCACACGCCCATGTGAAC
Found at i:50811334 original size:32 final size:32
Alignment explanation
Indices: 50811293--50811355 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
50811283 TGTCCTTAGT
50811293 AATTAGTTTAGTTAATTATAGATTAAAAATCA
1 AATTAGTTTAGTTAATTATAGATTAAAAATCA
50811325 AATTAGTTTAGTTAATTATAGATTAAAAATC
1 AATTAGTTTAGTTAATTATAGATTAAAAATC
50811356 CATCTCATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (32 bp):
AATTAGTTTAGTTAATTATAGATTAAAAATCA
Found at i:50824531 original size:6 final size:6
Alignment explanation
Indices: 50824506--50824556 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
50824496 ATCTTCCTAT
* * *
50824506 TTTTTA TTATTTA TTCTTA TTTTTA -TTTTA TTTCTA TTTTTA TTTTCA
1 TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
50824554 TTT
1 TTT
50824557 CAATTTTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
5 5 0.13
6 27 0.71
7 6 0.16
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:50824537 original size:17 final size:17
Alignment explanation
Indices: 50824523--50824575 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 17
50824513 TATTTATTCT
50824523 TATTTTTATTTTATTTC
1 TATTTTTATTTTATTTC
50824540 TATTTTTATTTTCATTTC
1 TATTTTTATTTT-ATTTC
*
50824558 AATTTTATTATTTTATTT
1 TA-TTT-TTATTTTATTT
50824576 TGAAAGACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 12 0.38
18 6 0.19
19 7 0.22
20 7 0.22
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (17 bp):
TATTTTTATTTTATTTC
Found at i:50824543 original size:23 final size:24
Alignment explanation
Indices: 50824507--50824556 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
50824497 TCTTCCTATT
* *
50824507 TTTTATTATTTATTCTTATTTTTA
1 TTTTATTATCTATTCTTATTTTCA
*
50824531 TTTTATT-TCTATTTTTATTTTCA
1 TTTTATTATCTATTCTTATTTTCA
50824554 TTT
1 TTT
50824557 CAATTTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (24 bp):
TTTTATTATCTATTCTTATTTTCA
Found at i:50824549 original size:29 final size:30
Alignment explanation
Indices: 50824510--50824566 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
50824500 TCCTATTTTT
**
50824510 TATTATTTATTCTT-ATTTTTATTTTATTTC
1 TATTATTTATT-TTCATTTCAATTTTATTTC
50824540 TATT-TTTATTTTCATTTCAATTTTATT
1 TATTATTTATTTTCATTTCAATTTTATT
50824567 ATTTTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.08
29 18 0.75
30 4 0.17
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (30 bp):
TATTATTTATTTTCATTTCAATTTTATTTC
Found at i:50829950 original size:46 final size:46
Alignment explanation
Indices: 50829807--50830072 Score: 247
Period size: 46 Copynumber: 5.7 Consensus size: 46
50829797 TGTGTGAGCT
* * *
50829807 AGTGTAAGACAT-TCTGGGACATGCATCGGCCAC-ATTATGTAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAAGCC
* * * *
50829852 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
*
50829900 AGTGTAAGACATGTGTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
* *
50829946 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
* * * * * *
50829990 AGTGTAAGACCATGTCTGGGACATGGCATGGGAAC-AGATATATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CCTCGAGATGT-A-AGCC
50830040 AGTGTAAGACCATGTCTGGGACATAGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
50830073 ATCTTACCCC
Statistics
Matches: 185, Mismatches: 23, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
44 11 0.06
45 25 0.14
46 68 0.37
47 23 0.12
48 26 0.14
49 1 0.01
50 31 0.17
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:50831519 original size:12 final size:11
Alignment explanation
Indices: 50831498--50831546 Score: 53
Period size: 12 Copynumber: 4.2 Consensus size: 11
50831488 ATTGAGTCCA
50831498 TTTATTTTATT
1 TTTATTTTATT
50831509 TTTAGTTTTATT
1 TTTA-TTTTATT
*
50831521 TCTATTTTTATT
1 TTTA-TTTTATT
*
50831533 TCTATTGTTATT
1 TTTATT-TTATT
50831545 TT
1 TT
50831547 CTTAAACTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
11 6 0.18
12 27 0.82
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:50831538 original size:18 final size:17
Alignment explanation
Indices: 50831498--50831546 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
50831488 ATTGAGTCCA
50831498 TTTATTTTATTTTTAGT
1 TTTATTTTATTTTTAGT
50831515 TTTATTTCTATTTTTA-T
1 TTTATTT-TATTTTTAGT
50831532 TTCTATTGTTATTTT
1 TT-TATT-TTATTTT
50831547 CTTAAACTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 10 0.34
18 18 0.62
19 1 0.03
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (17 bp):
TTTATTTTATTTTTAGT
Found at i:50831790 original size:19 final size:21
Alignment explanation
Indices: 50831763--50831801 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
50831753 TCTCTCCCTC
50831763 TATTATGA-TAT-TCTATTTT
1 TATTATGATTATATCTATTTT
*
50831782 TATTGTGATTATATCTATTT
1 TATTATGATTATATCTATTT
50831802 GAACATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 3 0.18
21 7 0.41
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.62
Consensus pattern (21 bp):
TATTATGATTATATCTATTTT
Found at i:50834900 original size:13 final size:13
Alignment explanation
Indices: 50834882--50834906 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50834872 TCCCATACTT
50834882 ATACACATTATAG
1 ATACACATTATAG
50834895 ATACACATTATA
1 ATACACATTATA
50834907 ACATCAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (13 bp):
ATACACATTATAG
Found at i:50836449 original size:50 final size:50
Alignment explanation
Indices: 50836395--50836709 Score: 266
Period size: 50 Copynumber: 6.3 Consensus size: 50
50836385 ATTTGGTATG
50836395 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTA
1 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTA
** * ** *
50836445 CTACACACATGATCGAAGTAAACAGGT-ATGCA--TAGTAGCCTGCACTTAGTA
1 CTACACAC--G-T-GACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTA
* * * * * **
50836496 CTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
1 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTA
* * *
50836546 CTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTACACTTAGTA
1 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTA
* * * *
50836596 CTACACACGTGA-TCGAA--GT-TAAGGGTACGCATAGTAGCCTGCACTTAGTA
1 CTACACACGTGACT-TAACCATCTAA---TACACGTAGTAGCCTGCACTTAGTA
* * * * * * *
50836646 CTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCATTTAGTA
1 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTA
50836696 CTACACACGTGACT
1 CTACACACGTGACT
50836710 CACAACGAAT
Statistics
Matches: 206, Mismatches: 44, Indels: 30
0.74 0.16 0.11
Matches are distributed among these distances:
47 8 0.04
48 4 0.02
49 2 0.01
50 149 0.72
51 26 0.13
52 2 0.01
53 7 0.03
54 8 0.04
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTA
Found at i:50836688 original size:150 final size:151
Alignment explanation
Indices: 50836395--50836709 Score: 542
Period size: 150 Copynumber: 2.1 Consensus size: 151
50836385 ATTTGGTATG
*
50836395 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCG
1 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACATGATCG
* *
50836460 AAGTAAACAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACA
66 AAGTAAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACA
50836525 CGTAGTAGCCTGCACTTAGTA
131 CGTAGTAGCCTGCACTTAGTA
* * *
50836546 CTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCG
1 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACATGATCG
* *
50836611 AAGTTAA-GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACA
66 AAGTAAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACA
*
50836675 CGTAGTAGCCTGCATTTAGTA
131 CGTAGTAGCCTGCACTTAGTA
50836696 CTACACACGTGACT
1 CTACACACGTGACT
50836710 CACAACGAAT
Statistics
Matches: 155, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
150 88 0.57
151 67 0.43
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (151 bp):
CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACATGATCG
AAGTAAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACA
CGTAGTAGCCTGCACTTAGTA
Found at i:50837309 original size:30 final size:30
Alignment explanation
Indices: 50837265--50837323 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
50837255 CAAAAATCAT
* *
50837265 ACTTTTACAAATTTGCATTTTGACCCCTAA
1 ACTTTCACAAATTTGCACTTTGACCCCTAA
* *
50837295 ACTTTCACATATTTGCACTTTGGCCCCTA
1 ACTTTCACAAATTTGCACTTTGACCCCTA
50837324 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.08, T:0.39
Consensus pattern (30 bp):
ACTTTCACAAATTTGCACTTTGACCCCTAA
Found at i:50839642 original size:15 final size:15
Alignment explanation
Indices: 50839622--50839660 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
50839612 AACCAAGATC
50839622 TCCAAGAT-AGAGAAA
1 TCCAAGATAAG-GAAA
50839637 TCCAAGATAAGGAAA
1 TCCAAGATAAGGAAA
50839652 TCCAAGATA
1 TCCAAGATA
50839661 CAATATCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (15 bp):
TCCAAGATAAGGAAA
Found at i:50859568 original size:50 final size:50
Alignment explanation
Indices: 50859503--50859891 Score: 363
Period size: 50 Copynumber: 7.7 Consensus size: 50
50859493 ACCGAAGCTC
* * *
50859503 TCTGGTACGCATAGTAGCCTACACTTAGCACTACACATACGACCTATCAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
* * * * *
50859553 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
* * * ** *
50859603 TCTGATACACATAGTAGCCTACACTTAGTACTACACACGTGAACGAAGTTAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCG-ACCTA-TCAA
** *
50859655 -CAT-GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TC-TGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
* * * * * * *
50859704 TCTAGTACACGTAGTAGCCTACACTTAGTACTACACATGTGGCTTAACTA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
* * * * *
50859754 TCTGATACACATAGTAGCCTACACTTAGTACTACACACGTGA-TTGAAGTTAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCT--A-TCAA
* ** *
50859806 -CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
* * * *
50859855 TCTAGTCCACGTAGTAGCCTGCACTTAGTACTACACA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACA
50859892 CGTGACTCAC
Statistics
Matches: 272, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
49 9 0.03
50 189 0.69
51 70 0.26
52 4 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
Found at i:50859769 original size:151 final size:151
Alignment explanation
Indices: 50859506--50859898 Score: 660
Period size: 151 Copynumber: 2.6 Consensus size: 151
50859496 GAAGCTCTCT
* * * * *
50859506 GGTACGCATAGTAGCCTACACTTAGCACTACACATACGACCTATCAATCTGGTACACGTAGTAGC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
50859571 CTACACTTAGTACTACACATGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTA
66 CTACACTTAGTACTACACATGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTA
50859636 CACACGTGAACGAAGTTAACA
131 CACACGTGAACGAAGTTAACA
*
50859657 TGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
* *
50859722 CTACACTTAGTACTACACATGTGGCTTAACTATCTGATACACATAGTAGCCTACACTTAGTACTA
66 CTACACTTAGTACTACACATGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTA
** *
50859787 CACACGTGATTGAAGTTAACG
131 CACACGTGAACGAAGTTAACA
*
50859808 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTCCACGTAGTAGC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
* *
50859873 CTGCACTTAGTACTACACACGTGACT
66 CTACACTTAGTACTACACATGTGACT
50859899 CACAACGAAT
Statistics
Matches: 226, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 226 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (151 bp):
GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
CTACACTTAGTACTACACATGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTA
CACACGTGAACGAAGTTAACA
Found at i:50859820 original size:101 final size:100
Alignment explanation
Indices: 50859504--50859898 Score: 368
Period size: 101 Copynumber: 3.9 Consensus size: 100
50859494 CCGAAGCTCT
* * * * * *
50859504 CTGGTACGCATAGTAGCCTACACTTAGCACTACACATACGACCTATCAATCTGGTACACGTAGTA
1 CTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACATAGTA
* * *
50859569 GCCTACACTTAGTACTACACATGTGACTTAACCAT
66 GCCTACACTTAGTACTACACACGTGACTTAATCAA
* * * * * * **
50859604 CTGATACACATAGTAGCCTACACTTAGTACTACACACGTGAACGAAGTTAA-CATG-TATGCATA
1 CTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAA--CAATC-TGATACACATA
* * * *
50859667 GTAGCCTGCACTTAGTACTACACATGCGACCT-ATCAA
63 GTAGCCTACACTTAGTACTACACACGTGACTTAATCAA
* * * * * *
50859704 TCTAGTACACGTAGTAGCCTACACTTAGTACTACACATGTGGCTTAACTATCTGATACACATAGT
1 -CTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACATAGT
*
50859769 AGCCTACACTTAGTACTACACACGTGA-TTGAAGTTAA
65 AGCCTACACTTAGTACTACACACGTGACTT-AA-TCAA
* ** * * * *
50859806 CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCT-AGTCCACGTAGT
1 CTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGA-TACACATAGT
*
50859870 AGCCTGCACTTAGTACTACACACGTGACT
65 AGCCTACACTTAGTACTACACACGTGACT
50859899 CACAACGAAT
Statistics
Matches: 235, Mismatches: 49, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
99 4 0.02
100 74 0.31
101 149 0.63
102 8 0.03
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (100 bp):
CTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACATAGTA
GCCTACACTTAGTACTACACACGTGACTTAATCAA
Found at i:50864910 original size:17 final size:18
Alignment explanation
Indices: 50864890--50864934 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
50864880 AATAACTAAG
50864890 ATAAATAACA-TAGAACA
1 ATAAATAACAGTAGAACA
*
50864907 ATAAATTAAATAGTAGAACA
1 ATAAA-T-AACAGTAGAACA
50864927 ATAAATAA
1 ATAAATAA
50864935 GAAAATAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 5 0.21
18 3 0.12
19 4 0.17
20 12 0.50
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.22
Consensus pattern (18 bp):
ATAAATAACAGTAGAACA
Found at i:50869177 original size:33 final size:33
Alignment explanation
Indices: 50869140--50869217 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 33
50869130 TGGCCTTGCC
** * *
50869140 ATGGTCTTACATTCGTAGTGCCATAACCCAGTT
1 ATGGTCTTACATTCAAAATGCCATAACCCAGTA
* *
50869173 ATGGTCTTATCA-TCAAAATTCCATAGCCCAGTA
1 ATGGTCTTA-CATTCAAAATGCCATAACCCAGTA
50869206 ATGGTCTTACAT
1 ATGGTCTTACAT
50869218 ATAAACACTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
32 2 0.05
33 33 0.89
34 2 0.05
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (33 bp):
ATGGTCTTACATTCAAAATGCCATAACCCAGTA
Found at i:50872075 original size:31 final size:31
Alignment explanation
Indices: 50872034--50872092 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
50872024 AAGCAGGTCT
50872034 AAAACATTTAATCATTTAAATTCCATCATTA
1 AAAACATTTAATCATTTAAATTCCATCATTA
*
50872065 AAAACGTTTAATCATTTAAATTCCATCA
1 AAAACATTTAATCATTTAAATTCCATCA
50872093 GTAAGTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (31 bp):
AAAACATTTAATCATTTAAATTCCATCATTA
Found at i:50874264 original size:23 final size:23
Alignment explanation
Indices: 50874217--50874267 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
50874207 AAGATTAGAA
50874217 AACAGAGGAAGAAAAAAAACGAAG
1 AACAGAGGAAGAAAAAAAAC-AAG
*
50874241 AACAGAGGAAGGAAAAAGAA-AAG
1 AACAGAGGAA-GAAAAAAAACAAG
50874264 AACA
1 AACA
50874268 TGAAACTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 7 0.28
24 10 0.40
25 8 0.32
ACGTcount: A:0.67, C:0.08, G:0.25, T:0.00
Consensus pattern (23 bp):
AACAGAGGAAGAAAAAAAACAAG
Found at i:50878461 original size:21 final size:20
Alignment explanation
Indices: 50878437--50878476 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
50878427 CATATATTTT
50878437 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
50878458 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
50878477 ATAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:50878484 original size:20 final size:21
Alignment explanation
Indices: 50878442--50878484 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
50878432 ATTTTAATGA
*
50878442 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
50878463 TTGATGATAG-TTAT-ATAAGT
1 TTGATGATAGATTATGA-AAGT
50878483 TT
1 TT
50878485 TGTTATGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:50881941 original size:39 final size:40
Alignment explanation
Indices: 50881841--50882044 Score: 218
Period size: 40 Copynumber: 5.1 Consensus size: 40
50881831 TTGAATGATG
* * * *
50881841 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50881881 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50881921 TCCGGGCGAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50881960 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* ** * *
50882001 T-CGGGCTATGTCCCGAAGGCATTTGAACGAGTAACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
50882040 TCCGG
1 TCCGG
50882045 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
39 35 0.26
40 91 0.66
41 11 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50882047 original size:79 final size:79
Alignment explanation
Indices: 50881894--50882058 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
50881884 GGACTAAGAT
* ** *
50881894 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCGAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCGAAGCCCGAAGGCATTTGAACGAGTAACTAA
* *
50881959 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* * *
50881973 CCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAGTAACT
1 CCGAAGGCATTTGTGCGAGATACTA-AATCCGGGCGAAG-CCCGAAGGCATTTGAACGAGTAACT
* *
50882037 ATATC-CGGTTAAATT
64 AAATCTCGGTTAAATC
50882052 CCGAAGG
1 CCGAAGG
50882059 TATGTGATTT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 45 0.62
80 28 0.38
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCGAAGCCCGAAGGCATTTGAACGAGTAACTAA
ATCTCGGTTAAATC
Found at i:50882380 original size:47 final size:47
Alignment explanation
Indices: 50882250--50882654 Score: 702
Period size: 47 Copynumber: 8.6 Consensus size: 47
50882240 AAGGGTTGGT
50882250 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
50882297 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
50882346 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50882393 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50882440 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50882487 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
50882534 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
50882581 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
50882628 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
50882655 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 296 0.87
49 46 0.13
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50882829 original size:37 final size:37
Alignment explanation
Indices: 50882773--50882851 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
50882763 CCGAGCTCTA
* * * *
50882773 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCAGGGT
* *
50882810 AAGACCCGATAACTTCGTGTGGAGATTATGTTAGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCAGGGT
50882847 AAGAC
1 AAGAC
50882852 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCAGGGT
Found at i:50891226 original size:23 final size:24
Alignment explanation
Indices: 50891200--50891245 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
50891190 CTTCGCTGTC
*
50891200 TCAA-ATTCAAGTCTTTTGTGACA
1 TCAAGATTCAAGACTTTTGTGACA
*
50891223 TCAAGTATTTAAGACTTTTGTGA
1 TCAAG-ATTCAAGACTTTTGTGA
50891246 TCGGTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
25 15 0.79
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.41
Consensus pattern (24 bp):
TCAAGATTCAAGACTTTTGTGACA
Found at i:50894873 original size:40 final size:40
Alignment explanation
Indices: 50894828--50895532 Score: 1144
Period size: 40 Copynumber: 17.6 Consensus size: 40
50894818 CAAGCTCAAT
* * * * *
50894828 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50894868 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCA-AAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
50894907 TTGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 -TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * * *
50894948 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
50894988 TGCCTTCGGGTCTTATCCCGGAGATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
50895028 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50895068 TGCCTTCGGGTCTTCGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50895108 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50895148 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50895188 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50895228 TGCCTTCGGGTCTTAGCTCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
50895268 TGCCTTCGGGTCTTATCTCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50895308 TGCCTTCGGGTCTTAGCCCAGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50895348 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
50895388 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCTCAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50895428 TGCCTTCCGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
** *
50895468 TGCCTTCCAGTCTTAGCTCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50895508 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
50895533 CATTCAAATG
Statistics
Matches: 620, Mismatches: 41, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
39 4 0.01
40 612 0.99
41 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:50901544 original size:40 final size:40
Alignment explanation
Indices: 50901499--50902179 Score: 1015
Period size: 40 Copynumber: 17.0 Consensus size: 40
50901489 CAAGCTCAAT
* * * * *
50901499 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50901539 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
*
50901579 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
50901619 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCG--CAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50901657 -GCC-TC-GGTC-TAG-CC-GATATATC-ATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
50901690 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50901730 TGCCTTCGGGTCTTATCCCGGATATATCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAT-C----A-AT----TCGCACAAA
* *
50901780 TGCCTTCAGGTCTTCGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50901820 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50901860 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50901900 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50901940 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGTACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50901980 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50902020 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50902060 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50902100 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50902140 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50902180 GCCCGGATAT
Statistics
Matches: 598, Mismatches: 22, Indels: 42
0.90 0.03 0.06
Matches are distributed among these distances:
31 5 0.01
32 8 0.01
33 6 0.01
34 6 0.01
35 6 0.01
36 6 0.01
37 5 0.01
38 5 0.01
39 10 0.02
40 500 0.84
41 2 0.00
44 2 0.00
45 2 0.00
46 1 0.00
49 1 0.00
50 33 0.06
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:50902184 original size:25 final size:25
Alignment explanation
Indices: 50902156--50902204 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
50902146 CGGGTCTTAT
50902156 CCCGGATATATCAATTCGCACAAAG
1 CCCGGATATATCAATTCGCACAAAG
50902181 CCCGGATATATCAATTCGCACAAA
1 CCCGGATATATCAATTCGCACAAA
50902205 TGCCTTCGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.29, G:0.14, T:0.20
Consensus pattern (25 bp):
CCCGGATATATCAATTCGCACAAAG
Found at i:50902218 original size:65 final size:64
Alignment explanation
Indices: 50902114--50902243 Score: 242
Period size: 65 Copynumber: 2.0 Consensus size: 64
50902104 TTCGGGTCTT
50902114 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAA
1 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTA-CCCGGATATATCAATTCGCACAA
*
50902179 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCGGATATATCAATTCGCACAA
1 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTACCCGGATATATCAATTCGCACAA
50902243 A
1 A
50902244 TGCCTTCGGG
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
64 23 0.36
65 41 0.64
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (64 bp):
AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTACCCGGATATATCAATTCGCACAA
Found at i:50902236 original size:39 final size:40
Alignment explanation
Indices: 50902179--50902268 Score: 173
Period size: 39 Copynumber: 2.3 Consensus size: 40
50902169 ATTCGCACAA
50902179 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTT
50902219 AG-CCGGATATATCAATTCGCACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTT
50902258 AGCCCGGATAT
1 AGCCCGGATAT
50902269 CATTCAAATG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
39 39 0.80
40 10 0.20
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTT
Found at i:50902265 original size:104 final size:105
Alignment explanation
Indices: 50902074--50902268 Score: 374
Period size: 104 Copynumber: 1.9 Consensus size: 105
50902064 TTCGGGTCTT
50902074 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAA
1 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAA
*
50902139 ATGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAA
66 ATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAA
50902179 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAG-CCGGATATATCAATTCGCACAA
1 AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAA
50902243 ATGCCTTCGGGTCTTAGCCCGGATAT
66 ATGCCTTCGGGTCTTAGCCCGGATAT
50902269 CATTCAAATG
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
104 47 0.53
105 42 0.47
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (105 bp):
AGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAA
ATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAA
Found at i:50902294 original size:104 final size:105
Alignment explanation
Indices: 50902081--50902298 Score: 334
Period size: 104 Copynumber: 2.1 Consensus size: 105
50902071 CTTAGCCCGG
50902081 ATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTT
1 ATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTT
* * **
50902146 CGGGTCTTATCCCGGATATATCAATTCGCACAAAGCCCGG
66 CGGGTCTTAGCCCGGATATATCAAATCGCACAAAGCCCAC
50902186 ATATATCAATTCGCACAAATGCCTTCGGGTCTTAG-CCGGATATATCAATTCGCACAAATGCCTT
1 ATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTT
* * *
50902250 CGGGTCTTAGCCCGGATATCATTCAAAT-GCTC-ATGCGCAC
66 CGGGTCTTAGCCCGGATAT-A-TCAAATCGCACAAAGCCCAC
50902290 ATATATCAA
1 ATATATCAA
50902299 CAATCATGAC
Statistics
Matches: 104, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
104 60 0.58
105 39 0.38
106 5 0.05
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (105 bp):
ATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTT
CGGGTCTTAGCCCGGATATATCAAATCGCACAAAGCCCAC
Found at i:50906857 original size:93 final size:93
Alignment explanation
Indices: 50906744--50906915 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
50906734 CGCCCACAAG
* *
50906744 CGAACTTGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
50906808 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
**
50906837 CGAACTCGGACTCAACTCAACGATTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50906902 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50906916 TCAATCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50906911 original size:46 final size:46
Alignment explanation
Indices: 50906745--50906912 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 46
50906735 GCCCACAAGC
* * *
50906745 GAACTTGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGT
* * *
50906791 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
*
50906838 GAACTCGGACTCAACTCAACGATTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
50906884 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
50906913 TGCTCAATCA
Statistics
Matches: 101, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 52 0.51
47 28 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:50906931 original size:46 final size:46
Alignment explanation
Indices: 50906745--50906931 Score: 145
Period size: 46 Copynumber: 4.0 Consensus size: 46
50906735 GCCCACAAGC
* * * * *
50906745 GAACTTGGACTCAACTCAACGAGCTCAGG-CGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GGATGCTCATCATCC-TAAGT
* *
50906791 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-CTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A--T-CATCCTAAGT
* *** *
50906838 GAACTCGGACTCAACTCAACGATTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC-TAAGT
50906884 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAATCATCCT-AGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ATCATCCTAAGT
50906930 GA
1 GA
50906932 CATGTCACTT
Statistics
Matches: 110, Mismatches: 19, Indels: 24
0.72 0.12 0.16
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 5 0.05
46 60 0.55
47 29 0.26
48 8 0.07
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCCTAAGT
Found at i:50915850 original size:114 final size:114
Alignment explanation
Indices: 50915650--50915877 Score: 411
Period size: 114 Copynumber: 2.0 Consensus size: 114
50915640 CATACATGCA
* *
50915650 TATATGAATAGGATTACATCCCCATAATTAATATGAGCCATATCTTATGGTCATATACAAAATGA
1 TATATGAATAGGATTACATCCCCATAACTAATATGAGCCATATCTCATGGTCATATACAAAATGA
*
50915715 ATCATCAAATTATTATAAGCCAACACATTTGGCTATACAAATATGACAT
66 ATCATCAAATCATTATAAGCCAACACATTTGGCTATACAAATATGACAT
*
50915764 TATATGAATAGGATTACATCCCCATAACTAATATGAGCCATATCTCATGTTCATATACAAAATGA
1 TATATGAATAGGATTACATCCCCATAACTAATATGAGCCATATCTCATGGTCATATACAAAATGA
*
50915829 ATCATCACATCATTATAAGCCAACACATTTGGCTATACAAATATGACAT
66 ATCATCAAATCATTATAAGCCAACACATTTGGCTATACAAATATGACAT
50915878 ATAACAAAAA
Statistics
Matches: 109, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
114 109 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (114 bp):
TATATGAATAGGATTACATCCCCATAACTAATATGAGCCATATCTCATGGTCATATACAAAATGA
ATCATCAAATCATTATAAGCCAACACATTTGGCTATACAAATATGACAT
Found at i:50924044 original size:13 final size:13
Alignment explanation
Indices: 50923988--50924046 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
50923978 TAGTTTGACC
50923988 AATTGATTCTAAT
1 AATTGATTCTAAT
* *
50924001 AATTAATTCTATT
1 AATTGATTCTAAT
* *
50924014 AACT-AGTT-TGACT
1 AATTGA-TTCT-AAT
50924027 AATTGATTCTAAT
1 AATTGATTCTAAT
50924040 AATTGAT
1 AATTGAT
50924047 ATTATGATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
12 2 0.06
13 32 0.89
14 2 0.06
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
AATTGATTCTAAT
Found at i:50924489 original size:40 final size:40
Alignment explanation
Indices: 50924434--50924516 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
50924424 TTTGAAGAGG
50924434 TAAACATGTGGGTTTGGAAATGTTGAAGCATATTTACTCT
1 TAAACATGTGGGTTTGGAAATGTTGAAGCATATTTACTCT
50924474 TAAACATGTGGGTTTGGAAATGTTGAAGCATATTTACTCT
1 TAAACATGTGGGTTTGGAAATGTTGAAGCATATTTACTCT
50924514 TAA
1 TAA
50924517 TTATTATTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (40 bp):
TAAACATGTGGGTTTGGAAATGTTGAAGCATATTTACTCT
Found at i:50927545 original size:26 final size:25
Alignment explanation
Indices: 50927470--50927546 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 25
50927460 TTAGGAAGTT
50927470 CAAACGAGCC-ATATCGAGAAGCTCA
1 CAAA-GAGCCTATATCGAGAAGCTCA
*
50927495 CAAAGAGCCTTTAATC-AGGAAGCTCA
1 CAAAGAGCCTAT-ATCGA-GAAGCTCA
* *
50927521 CGAAGAGCCATATATCGAGACGCTCA
1 CAAAGAGCC-TATATCGAGAAGCTCA
50927547 TAAGAGTTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
24 5 0.12
25 6 0.14
26 29 0.67
27 3 0.07
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.16
Consensus pattern (25 bp):
CAAAGAGCCTATATCGAGAAGCTCA
Found at i:50927997 original size:21 final size:21
Alignment explanation
Indices: 50927973--50928013 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
50927963 AATTTTAACA
*
50927973 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATTCATAT
* *
50927994 TCAATTCAGTCCAATTCATA
1 TCAATTCAATACAATTCATA
50928014 CCTTAGGTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (21 bp):
TCAATTCAATACAATTCATAT
Found at i:50935610 original size:46 final size:46
Alignment explanation
Indices: 50935560--50935680 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 46
50935550 CATAGCCAAC
* * * *
50935560 GCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGAGGCCGAT
1 GCATGTCTCAGACATGTCTTACACTAGCACT-CGTCTCAAGGCCGAT
* *
50935606 GCATGTCTTAGACATGTCTTACACTAGCACTCGTCTCAATGCCGAT
1 GCATGTCTCAGACATGTCTTACACTAGCACTCGTCTCAAGGCCGAT
*
50935652 GCCATGTCTCAAACATGGTCTTACACTAG
1 G-CATGTCTCAGACAT-GTCTTACACTAG
50935681 ATCTCACAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 39 0.61
47 13 0.20
48 12 0.19
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCATGTCTCAGACATGTCTTACACTAGCACTCGTCTCAAGGCCGAT
Found at i:50942101 original size:40 final size:40
Alignment explanation
Indices: 50941863--50942087 Score: 369
Period size: 40 Copynumber: 5.6 Consensus size: 40
50941853 CGGATGATAA
50941863 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
50941903 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
50941943 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
50941983 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * * * **
50942023 CCGGGGTAAGTTCTGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
50942063 CCGGGCTAAATCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50942088 AGTGAGTAGC
Statistics
Matches: 172, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 172 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:50942106 original size:120 final size:120
Alignment explanation
Indices: 50941863--50942119 Score: 367
Period size: 120 Copynumber: 2.2 Consensus size: 120
50941853 CGGATGATAA
* *
50941863 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCCGAAGGCAATTG
*** * * *
50941928 TGCGAGTTACTATTTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
66 TGCGAGTTACTATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTTACTATAT
* * *
50941983 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGGTAAGTTCTGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCCGAAGGCAATTG
*
50942048 TGCGAGTTACTATAACCGGGCTAAATCCCGAAGGCATTTGAGTGAG-TAGCTATAT
66 TGCGAGTTACTATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTTA-CTATAT
*
50942103 CC-GGCTAA-ACCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50942120 TACTTGGTTG
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
118 8 0.07
119 8 0.07
120 107 0.87
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCCGAAGGCAATTG
TGCGAGTTACTATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTTACTATAT
Found at i:50953675 original size:23 final size:23
Alignment explanation
Indices: 50953645--50953691 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
50953635 GGCATGAGCA
*
50953645 AAACTTACTTATTAATATTCACT
1 AAACTTACTTACTAATATTCACT
50953668 AAACTTACTTACTAATATTCACT
1 AAACTTACTTACTAATATTCACT
50953691 A
1 A
50953692 CACGTCATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (23 bp):
AAACTTACTTACTAATATTCACT
Found at i:50953967 original size:46 final size:45
Alignment explanation
Indices: 50953862--50954076 Score: 184
Period size: 46 Copynumber: 4.6 Consensus size: 45
50953852 GGTAAGTTGT
* * *
50953862 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTAGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTCG-AGGC
*
50953908 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGC
* * * * * * *
50953954 CGAAGCATGTCCCAGACATCTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAGGC
* * * *
50954000 CGATGCCATGTCCAAAACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAGGC
*
50954048 CGATGTATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
50954077 AGCTCACACA
Statistics
Matches: 137, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 64 0.47
47 24 0.18
48 21 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGC
Found at i:50954034 original size:94 final size:92
Alignment explanation
Indices: 50953868--50954084 Score: 237
Period size: 94 Copynumber: 2.3 Consensus size: 92
50953858 TTGTCGATGC
* * *
50953868 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTAGTAGCCGATGCATGTCCCAGACATGTCT
1 CATGTCCCAGACAT-GTCTTACACTAGCACACATCTAATAGCCGATGCATGTCCAAAACATGTCT
* *
50953931 TACACTGGCT-TACGT-CTCGAGGCCGAAG
65 TACACTGGCTCT-CATAAT-GAGGCCGAAG
* * *
50953959 CATGTCCCAGACATCTCTTACACTAGCACTCGTCTCAAT-GCCGATGCCATGTCCAAAACATGGT
1 CATGTCCCAGACATGTCTTACACTAGCACACATCT-AATAGCCGATG-CATGTCCAAAACAT-GT
* *
50954023 CTTACACTGGCTCTCATAATGTGGCCGATG
63 CTTACACTGGCTCTCATAATGAGGCCGAAG
* *
50954053 TATGTCCCAGACATGTCTTACACTAGCTCACA
1 CATGTCCCAGACATGTCTTACACTAGCACACA
50954085 CAAGTGACCC
Statistics
Matches: 104, Mismatches: 15, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
90 9 0.09
91 15 0.14
92 13 0.12
93 14 0.13
94 51 0.49
95 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCACACATCTAATAGCCGATGCATGTCCAAAACATGTCTT
ACACTGGCTCTCATAATGAGGCCGAAG
Found at i:50956827 original size:32 final size:31
Alignment explanation
Indices: 50956770--50956832 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
50956760 AGTAATTCGT
* *
50956770 AAAGGGTTTTAGTTGAGCCACAAAAAACTAGG
1 AAAGGGTTCTAGTTAAGCCAC-AAAAACTAGG
**
50956802 AAAGGGTTCTAGTTAAGCCTTAAAAACTAGG
1 AAAGGGTTCTAGTTAAGCCACAAAAACTAGG
50956833 GGGAAGGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 10 0.37
32 17 0.63
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGGTTCTAGTTAAGCCACAAAAACTAGG
Found at i:50958473 original size:23 final size:20
Alignment explanation
Indices: 50958433--50958473 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
50958423 TTTTTTTTTC
50958433 AATTTAAAATGAAAATTTAT
1 AATTTAAAATGAAAATTTAT
50958453 AATTTAATAATAGTAAAATTT
1 AATTTAA-AAT-G-AAAATTT
50958474 TATTTTGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 1 0.06
23 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (20 bp):
AATTTAAAATGAAAATTTAT
Found at i:50960764 original size:143 final size:142
Alignment explanation
Indices: 50960235--50962508 Score: 2473
Period size: 143 Copynumber: 16.0 Consensus size: 142
50960225 TTTCGAGGTA
* * *
50960235 AAGTTCTTATGTCTTATGACTTTTTTTTCAATTTCATTTTTAAATATTGAAATTCAAATTTTGAG
1 AAGTTCTTATGTCTTATGA-TTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTGAG
* * * **
50960300 GCGCAGTTCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGAGGTTAAAAAGGAAATTTGGC
64 GCGAAG-TCGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
* * *
50960365 ATGAGATGCATACCA
128 ATGTGATGCATAGCG
* *
50960380 AAGTTCTTATGTCTTGTGA-TTTTTTTAATTTAATTTTTAAATATTAAAACTCGAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * * *
50960444 GAAATCAATTAC-AGAATCAATGATAAAGTATAAACTTTTAACAAGTTAAAATGGAAATTTACCA
66 GAAGTC-GTTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
50960508 TGTGATGCA-AGCG
129 TGTGATGCATAGCG
* * * * * *
50960521 AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTGTTAAATATTGAGAAC-CGAATTTTAAAG
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATT-AAAACTCGAATTTTGAGG
* * * * *
50960585 CGAAGTCCGTTACAAAATTAAAGATAAAGTATAAATTTTTAAGAGGTTACAATGGAAATATATCA
65 CGAAGT-CGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
*
50960650 TGTGATGCATAACG
129 TGTGATGCATAGCG
* * * * *
50960664 AAGTTCTTATGTCTTATAATTTTTTTTCAATTTCATTTTTAAATATTAAAACTTGGACTTTGAAG
1 AAGTTCTTATGTCTTATGATTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * * * *
50960729 TGAAGTCGTTACGAAATAAAAAATAAAGTACAAATTTTGAAAAGGTTAAAATGGAAATTTACC--
65 CGAAGTCGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
50960792 ---ATG--T---G
130 GTGATGCATAGCG
* * * *
50960797 AAGTTATTATGTCTTATGATTGTTTTCTAATTTTATTTTTAAATATTGAAACTCGAATTTTGAGG
1 AAGTTCTTATGTCTTATGATT-TTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
*
50960862 CGAAGTCCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGCA-GTTAAAATGGAAATTTACC
65 CGAAGT-CGTTACGAAATCAAAGATAAAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTACC
50960926 ATGTGATGCATAGCG
128 ATGTGATGCATAGCG
* * * * *
50960941 AAGTTCTTATGTCATATGATTTTTTTTAATTTCA-TTTTAAATATTGAAACTCAAATTTTGGGGT
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * * * * *
50961005 GAAGCCCATTACGGAATCAAAGGTCAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACAAT
66 GAAG-TCGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
50961070 GTGATGCATAGCG
130 GTGATGCATAGCG
* * *
50961083 AAGTTCTCATGTCTTATGATTTTTTTTCAATTTCATTTTTAAATATTGACACTCGAATTTTGAGG
1 AAGTTCTTATGTCTTATGATTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * * *
50961148 CGAAATCCGTTAC-AGAATCAAAGATAAAATATAAATTGTTAAGAGGTTAAAAAGGAAATTTACT
65 CGAAGT-CGTTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
50961212 ATGTGATGCATAGCG
128 ATGTGATGCATAGCG
*
50961227 AAGTTCTTATGTCTTATGATGTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * *
50961292 GAAGTTAGTTAC-AGAACCAAAGATATATTATAAAATTTTAAGAGGTTAAAATGGAAATTTACCA
66 GAAG-TCGTTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
* *
50961356 TGTGATGCACAACG
129 TGTGATGCATAGCG
** * ** * * * *
50961370 AAGTTCTCGTGTGTTATGATTCCTTTTAATTTCAATTTTAAATATTAAAATTCAAATTTCGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * *
50961435 GAAGTCGGTTACAAAATCAAAGATAAAGTATAAATCTTTAAGAGGTTAAAATGAAAATTTACAAT
66 GAAGTC-GTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
*
50961500 ATGATGCATAGCG
130 GTGATGCATAGCG
* ** * * * ** * *
50961513 AAATTCTCGTATCTTATAATTCTTACTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * *
50961578 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCAT
66 GAAGT-CGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
50961643 GTGATGCATAGCG
130 GTGATGCATAGCG
* * * *
50961656 AAGTTCCTATGTCTTACGA-TGTTTTTAATTTCATCTTTAAATATTAAAACTCGAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * *
50961720 GAAGTTGGTTACAAAATCAAAGATATATTATAAAATTTTAAGAGGTTAAAATGGAAATTTACCAT
66 GAAG-TCGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
* *
50961785 GTGATGCACAACG
130 GTGATGCATAGCG
** * * * *
50961798 AAGTTCTCGTGTCTTATGATTCTTTTTAATTTCAATTTTAAATATTAAAATTCAAATTTCT-AGG
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTT-TGAGG
* * *
50961862 CGAAGTCGATTA-TAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTGCA
65 CGAAGTCG-TTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
* *
50961926 ATGTGATGTATAACG
128 ATGTGATGCATAGCG
* * * ** *
50961941 AAGTTCTCATGTCTTATGATTCTTATTAATTTCATTTTTAAATATTGGAACTCAAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * ** *
50962006 CAAGTCTGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAATTTAGAAATTTACCAT
66 GAAGTC-GTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
50962071 GTGATGCATAGCG
130 GTGATGCATAGCG
* * * * * *
50962084 AAGTTTTTATGTCATATGAATTTTTTTCAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGA
1 AAGTTCTTATGTCTTATG-ATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * * *
50962149 CAAAGTCCGTTACG--GT-AACA-ATAAAGTATATATTTTTAACAGATTAAAATGGAAATTTACC
65 CGAAGT-CGTTACGAAATCAA-AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
* *
50962210 ATGTGATGCACAAC-
128 ATGTGATGCATAGCG
* * *
50962224 ATGGTTCTTATGTCGTATGGTTTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAG
1 A-AGTTCTTATGTCTTAT-GATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAG
* * * * * *
50962289 GTGAAGTCGGTTAC-ATAATGAAAGATATAGTATAAACTTTTAAGAGGTTAAAATGTAAATTAAC
64 GCGAAGTC-GTTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC
* * *
50962353 CATGTGGTGCACAGAG
127 CATGTGATGCATAGCG
** * *
50962369 AAGTTCTCGTGTCTTATGATTCTTTTTT-ATTTCATTTTTAATTATTGAAACTCGAATTTTGAGG
1 AAGTTCTTATGTCTTATGATT-TTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * * * * * *
50962433 CAAAGTCTATTTC-AGAATCAAAGATATATTATATATTTTTAAGAGGTTAAAATGAAAACTTACC
65 CGAAGTC-GTTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
*
50962497 TTGTGATGCATA
128 ATGTGATGCATA
50962509 ATGAAGATCT
Statistics
Matches: 1796, Mismatches: 280, Indels: 108
0.82 0.13 0.05
Matches are distributed among these distances:
133 56 0.03
134 54 0.03
135 1 0.00
136 1 0.00
138 3 0.00
139 3 0.00
140 2 0.00
141 136 0.08
142 430 0.24
143 802 0.45
144 288 0.16
145 20 0.01
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (142 bp):
AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
GAAGTCGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATG
TGATGCATAGCG
Found at i:50961827 original size:428 final size:428
Alignment explanation
Indices: 50960235--50962508 Score: 2690
Period size: 428 Copynumber: 5.3 Consensus size: 428
50960225 TTTCGAGGTA
* * *
50960235 AAGTTCTTATGTCTTATGACTTTTTTTTCAATTTCATTTTTAAATATTGAAATTCAAATTTTGAG
1 AAGTTCTCATGTCTTATGA-TTCTTTTT-AATTTCATTTTTAAATATTGAAACTCAAATTTTGAG
* * * **
50960300 GCGC-AGTTCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGAGGTTAAAAAGGAAATTTGG
64 GC-CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTAC
* * * * * *
50960364 CATGAGATGCATACCAAAGTTCTTATGTCTTGTGATTTTTTTAATTTAATTTTTAAATATTAAAA
128 CATGTGATGCATAGCGAAGTTCTTATGTCTTATGATGTTTTTAATTTCATTTTTAAATATTAAAA
* * * * * * * *
50960429 CTCGAATTTTGAGGCGAAATCAATTACAGAATCAATGATAAAGTATAAACTTTTAACAAGTTAAA
193 CTCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAAA
*
50960494 ATGGAAATTTACCATGTGATGCA-AGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTC-ATT
258 ATGGAAATTTACCATGTGATGCACAACGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCAATT
* * * * * *
50960557 GTTAAATATTGAGAAC-CGAATTTTAAAGCGAAGTCCGTTACAAAATTAAAGATAAAGTATAAAT
323 -TTAAATATT-AAAACTCAAATTTTGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAAT
* * * *
50960621 TTTTAAGAGGTTACAATGGAAATATATC-ATGTGATGCATAACG
386 TTTTAAGAGGTTAAAATGAAAATTTA-CAATGTGATGCATAGCG
* * * * *** * *
50960664 AAGTTCTTATGTCTTATAATTTTTTTTCAATTTCATTTTTAAATATTAAAACTTGGACTTTGAAG
1 AAGTTCTCATGTCTTATGATTCTTTTT-AATTTCATTTTTAAATATTGAAACTCAAATTTTGAGG
** * * * * * * *
50960729 TGAAGT-CGTTACGAAATAAAAAATAAAGTACAAATTTTGAAAAGGTTAAAATGGAAATTTACC-
65 CCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCA
* * *
50960792 ----ATG--T---GAAGTTATTATGTCTTATGATTGTTTTCTAATTTTATTTTTAAATATTGAAA
130 TGTGATGCATAGCGAAGTTCTTATGTCTTATGA-TGTTTT-TAATTTCATTTTTAAATATTAAAA
* * *
50960848 CTCGAATTTTGAGGCGAAGTCCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGCA-GTTAA
193 CTCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAG-AGGTTAA
* * * * *
50960912 AATGGAAATTTACCATGTGATGCATAGCGAAGTTCTTATGTCATATGATTTTTTTTAATTTC-AT
257 AATGGAAATTTACCATGTGATGCACAACGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCAAT
* * * * ** ** * *
50960976 TTTAAATATTGAAACTCAAATTTTGGGGTGAAGCCCATTACGGAATCAAAGGTCAAGTATAAATT
322 TTTAAATATTAAAACTCAAATTTTGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAATT
*
50961041 TTTAAAAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
387 TTTAAGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
* * *
50961083 AAGTTCTCATGTCTTATGATTTTTTTTCAATTTCATTTTTAAATATTGACACTCGAATTTTGAGG
1 AAGTTCTCATGTCTTATGATTCTTTTT-AATTTCATTTTTAAATATTGAAACTCAAATTTTGAGG
* * * * * *
50961148 CGAAATCCGTTACAGAATCAAAGATAAAATATAAATTGTTAAGAGGTTAAAAAGGAAATTTACTA
65 CCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCA
50961213 TGTGATGCATAGCGAAGTTCTTATGTCTTATGATGTTTTTTAATTTCATTTTTAAATATTAAAAC
130 TGTGATGCATAGCGAAGTTCTTATGTCTTATGATG-TTTTTAATTTCATTTTTAAATATTAAAAC
* * * *
50961278 TCGAATTTTGAGGCGAAGTTAGTTACAGAACCAAAGATATATTATAAAATTTTAAGAGGTTAAAA
194 TCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAAAA
* * *
50961343 TGGAAATTTACCATGTGATGCACAACGAAGTTCTCGTGTGTTATGATTCCTTTTAATTTCAATTT
259 TGGAAATTTACCATGTGATGCACAACGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCAATTT
* * *
50961408 TAAATATTAAAATTCAAATTTCGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAATCTT
324 TAAATATTAAAACTCAAATTTTGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAATTTT
*
50961473 TAAGAGGTTAAAATGAAAATTTACAATATGATGCATAGCG
389 TAAGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
* * * * **
50961513 AAATTCTCGTATCTTATAATTCTTACTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
1 AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
50961578 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCAT
66 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCAT
* * *
50961643 GTGATGCATAGCGAAGTTCCTATGTCTTACGATGTTTTTAATTTCATCTTTAAATATTAAAACTC
131 GTGATGCATAGCGAAGTTCTTATGTCTTATGATGTTTTTAATTTCATTTTTAAATATTAAAACTC
** *
50961708 GAATTTTGAGGCGAAGTTGGTTACAAAATCAAAGATATATTATAAAATTTTAAGAGGTTAAAATG
196 GAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAAAATG
*
50961773 GAAATTTACCATGTGATGCACAACGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTCAATTTTA
261 GAAATTTACCATGTGATGCACAACGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCAATTTTA
* * * *
50961838 AATATTAAAATTCAAATTTCT-AGGCGAAGTCGATTATAGAATCAAAGATAAAGTATAAATTTTT
326 AATATTAAAACTCAAATTT-TGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAATTTTT
* * * *
50961902 AAGAGGTTAAAATGGAAATTTGCAATGTGATGTATAACG
390 AAGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
* *
50961941 AAGTTCTCATGTCTTATGATTCTTATTAATTTCATTTTTAAATATTGGAACTCAAATTTTGAGGC
1 AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
* **
50962006 CAAGTCTGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAATTTA-GAAATTTACCA
66 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAA-AAAGGAAATTTACCA
* * * *
50962070 TGTGATGCATAGCGAAGTTTTTATGTCATATGAATTTTTTTCAATTTCATTTTTAAATATTGAAA
130 TGTGATGCATAGCGAAGTTCTTATGTCTTATG-ATGTTTTT-AATTTCATTTTTAAATATTAAAA
* * * * ** * * * * *
50962135 CTCAAATTTTGAGACAAAGTCCGTTAC--GGT-AACA-ATAAAGTATATATTTTTAACAGATTAA
193 CTCGAATTTTGAGGCGAAGTCAGTTACAAAATCAA-AGATATAGTATAAAATTTTAAGAGGTTAA
* * * * *
50962196 AATGGAAATTTACCATGTGATGCACAAC-ATGGTTCTTATGTCGTATGGTTTTTTTTTAATTTCA
257 AATGGAAATTTACCATGTGATGCACAACGA-AGTTCTCATGTCTTAT-GATTCTTTTTAATTTCA
* * * * * *
50962260 TTTTTAAATATTAAAACTCGAATTTTGAGGTGAAGTCGGTTACATAATGAAAGATATAGTATAAA
320 ATTTTAAATATTAAAACTCAAATTTTGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAA
* * * * * * *
50962325 CTTTTAAGAGGTTAAAATGTAAATTAACCATGTGGTGCACAGAG
385 TTTTTAAGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
* * * *
50962369 AAGTTCTCGTGTCTTATGATTCTTTTTTATTTCATTTTTAATTATTGAAACTCGAATTTTGAGGC
1 AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
* ** * * * * * * * * *
50962434 AAAGTCTATTTCAGAATCAAAGATATATTATATATTTTTAAGAGGTTAAAATGAAAACTTACCTT
66 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCAT
50962499 GTGATGCATA
131 GTGATGCATA
50962509 ATGAAGATCT
Statistics
Matches: 1600, Mismatches: 215, Indels: 61
0.85 0.11 0.03
Matches are distributed among these distances:
417 17 0.01
418 9 0.01
419 242 0.15
420 85 0.05
422 3 0.00
425 3 0.00
426 1 0.00
427 113 0.07
428 661 0.41
429 286 0.18
430 180 0.11
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (428 bp):
AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCAT
GTGATGCATAGCGAAGTTCTTATGTCTTATGATGTTTTTAATTTCATTTTTAAATATTAAAACTC
GAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAAAATG
GAAATTTACCATGTGATGCACAACGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCAATTTTA
AATATTAAAACTCAAATTTTGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAATTTTTA
AGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
Found at i:50961904 original size:571 final size:568
Alignment explanation
Indices: 50960235--50962842 Score: 2634
Period size: 571 Copynumber: 4.5 Consensus size: 568
50960225 TTTCGAGGTA
* * *
50960235 AAGTTCTTATGTCTTATGACTTTTTTTTCAATTTCATTTTTAAATATTGAAATTCAAATTTTGAG
1 AAGTTCTCATGTCTTATGA--TTCTTTT-AATTTCATTTTTAAATATTGAAACTCAAATTTTGAG
* * * **
50960300 GCGCAGTTCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGAGGTTAAAAAGGAAATTTGGC
63 GCGAAG-TCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGAGGTTAAAATGAAAATTTACC
* * * * * *
50960365 ATGA-GATGCATA-CCAAAGTTCTTATGTCTTGTGATTTTTTTAATTTAATTTTTAAATATTAAA
127 AT-ATGATGCATAGCGAAA-TTCTTATGTCATATAATTTTTTTAATTTCATTTTTAAATATTGAA
* * * * * * *
50960428 ACTCGAATTTTGAGGCGAAATCAATTACAGAATCAATGATAAAGTATAAACTTTTAACAAGTTAA
190 ACTCAAATTTTGAGGCGAAGTCCATTACGGAATCAAAGATAAAGTATAAATTTTTAACAGGTTAA
*
50960493 AATGGAAATTTACCATGTGATGCA-AGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATT
255 AATGGAAATTTACCATGTGATGCATAGCGAAGTTCTCATGTCTTATGATTTTTTTTAATTTCATT
* * * * * *
50960557 GTTAAATATTGAGAAC-CGAATTTTAAAGCGAAGTCCGTTACAAAATTAAAGATAAAGTATAAAT
320 TTTAAATATT-AAAACTCGAATTTTGAGGCGAAGTCCGTTACAAAATCAAAGATAAAGTATAAAA
* * * * * * *
50960621 TTTTAAGAGGTTACAATGGAAATATATCATGTGATGCATAACGAAGTTCTTATGTCTTATAATTT
384 TTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCACAACGAAGTTCTCATGTCTTATGATTC
* * * * * * *
50960686 TTTTTCAATTTCATTTTTAAATATTAAAACTTGGACTTTGAAGTGAAGTCG-TTA-CGAAATAAA
449 TTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCGATTATAG-AATCAA
* * * *
50960749 AAATAAAGTACAAATTTTGAAAAGGTTAAAATGGAAATTTACCA--TG-T------G
512 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAAACG
* * * * *
50960797 AAGTTATTATGTCTTATGATTGTTTTCTAATTTTATTTTTAAATATTGAAACTCGAATTTTGAGG
1 AAGTTCTCATGTCTTATGATT-CTTT-TAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGG
*
50960862 CGAAGTCCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGCA-GTTAAAATGGAAATTTACC
64 CGAAGT-CGTTACGAAATCAAAGATAAAGTATAAAATTTTAAG-AGGTTAAAATGAAAATTTACC
* * *
50960926 ATGTGATGCATAGCGAAGTTCTTATGTCATATGATTTTTTTTAATTTCA-TTTTAAATATTGAAA
127 ATATGATGCATAGCGAAATTCTTATGTCATAT-AATTTTTTTAATTTCATTTTTAAATATTGAAA
* * * * * *
50960990 CTCAAATTTTGGGGTGAAGCCCATTACGGAATCAAAGGTCAAGTATAAATTTTTAAAAGGTTAAA
191 CTCAAATTTTGAGGCGAAGTCCATTACGGAATCAAAGATAAAGTATAAATTTTTAACAGGTTAAA
* *
50961055 ATGAAAATTTACAATGTGATGCATAGCGAAGTTCTCATGTCTTATGATTTTTTTTCAATTTCATT
256 ATGGAAATTTACCATGTGATGCATAGCGAAGTTCTCATGTCTTATGATTTTTTTT-AATTTCATT
* * * * *
50961120 TTTAAATATTGACACTCGAATTTTGAGGCGAAATCCGTTACAGAATCAAAGATAAAATAT-AAAT
320 TTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACAAAATCAAAGATAAAGTATAAAAT
* * * * *
50961184 TGTTAAGAGGTTAAAAAGGAAATTTACTATGTGATGCATAGCGAAGTTCTTATGTCTTATGATGT
385 T-TTAAGAGGTTAAAATGGAAATTTACCATGTGATGCACAACGAAGTTCTCATGTCTTATGAT-T
* * *
50961249 -TTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGT-TAGTTACAGAACCAA
448 CTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCGA-TTATAGAATCAA
* * *
50961312 AGATATATTATAAAATTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCACAACG
512 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA-AACG
* * * * * *
50961370 AAGTTCTCGTGTGTTATGATTCCTTTTAATTTCAATTTTAAATATTAAAATTCAAATTTCGAGGC
1 AAGTTCTCATGTCTTATGATT-CTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
* *
50961435 GAAGTCGGTTACAAAATCAAAGATAAAGTAT-AAATCTTTAAGAGGTTAAAATGAAAATTTACAA
65 GAAGTC-GTTACGAAATCAAAGATAAAGTATAAAAT-TTTAAGAGGTTAAAATGAAAATTTACCA
** * * **
50961499 TATGATGCATAGCGAAATTCTCGTATCTTATAATTCTTACTAATTTCATTTTTAAATATTGAAAC
128 TATGATGCATAGCGAAATTCTTATGTCATATAATT-TTTTTAATTTCATTTTTAAATATTGAAAC
* * *
50961564 TCAAATTTTGAGGCCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAA
192 TCAAATTTTGAGGCGAAGTCCATTACGGAATCAAAGATAAAGTATAAATTTTTAACAGGTTAAAA
* * * *
50961629 AGGAAATTTACCATGTGATGCATAGCGAAGTTC-CTATGTCTTACGA-TGTTTTTAATTTCATCT
257 TGGAAATTTACCATGTGATGCATAGCGAAGTTCTC-ATGTCTTATGATTTTTTTTAATTTCATTT
** * *
50961692 TTAAATATTAAAACTCGAATTTTGAGGCGAAGTTGGTTACAAAATCAAAGATATATTATAAAATT
321 TTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACAAAATCAAAGATAAAGTATAAAATT
*
50961757 TTAAGAGGTTAAAATGGAAATTTACCATGTGATGCACAACGAAGTTCTCGTGTCTTATGATTCTT
386 TTAAGAGGTTAAAATGGAAATTTACCATGTGATGCACAACGAAGTTCTCATGTCTTATGATTCTT
* * *
50961822 TTTAATTTCAATTTTAAATATTAAAATTCAAATTTCT-AGGCGAAGTCGATTATAGAATCAAAGA
451 TTTAATTTCATTTTTAAATATTAAAACTCGAATTT-TGAGGCGAAGTCGATTATAGAATCAAAGA
* * *
50961886 TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTGCAATGTGATGTATAACG
515 TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA-AACG
*
50961941 AAGTTCTCATGTCTTATGATTCTTATTAATTTCATTTTTAAATATTGGAACTCAAATTTTGAGGC
1 AAGTTCTCATGTCTTATGATTCTT-TTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
* * * * *
50962006 CAAGTCTGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTT-AATTTAGAAATTTACCA
65 GAAGTC-GTTACGAAATCAAAGATAAAGTATAAAATTTTAAGAGGTTAAAATGA-AAATTTACCA
* * *
50962070 TGTGATGCATAGCGAAGTTTTTATGTCATATGAATTTTTTTCAATTTCATTTTTAAATATTGAAA
128 TATGATGCATAGCGAAATTCTTATGTCATAT-AATTTTTTT-AATTTCATTTTTAAATATTGAAA
* * * * *
50962135 CTCAAATTTTGAGACAAAGTCCGTTACGG--T-AACA-ATAAAGTATATATTTTTAACAGATTAA
191 CTCAAATTTTGAGGCGAAGTCCATTACGGAATCAA-AGATAAAGTATAAATTTTTAACAGGTTAA
* * * * * *
50962196 AATGGAAATTTACCATGTGATGCACAAC-ATGGTTCTTATGTCGTATGGTTTTTTTTTAATTTCA
255 AATGGAAATTTACCATGTGATGCATAGCGA-AGTTCTCATGTCTTAT-GATTTTTTTTAATTTCA
* * * * *
50962260 TTTTTAAATATTAAAACTCGAATTTTGAGGTGAAGTCGGTTACATAATGAAAGATATAGTATAAA
318 TTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACAAAATCAAAGATAAAGTATAAA
* * * * *
50962325 CTTTTAAGAGGTTAAAATGTAAATTAACCATGTGGTGCACAGA-GAAGTTCTCGTGTCTTATGAT
383 ATTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCACA-ACGAAGTTCTCATGTCTTATGAT
* * * * *
50962389 TCTTTTTTATTTCATTTTTAATTATTGAAACTCGAATTTTGAGGCAAAGTCTATT-TCAGAATCA
447 TCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCGATTAT-AGAATCA
* * * * *
50962453 AAGATATATTATATATTTTTAAGAGGTTAAAATGAAAACTTACCTTGTGATGCATAATGAAGATC
511 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC-----ATG-----T---G---
*
50962518 TTATCTTAGCATTGAAAAAAAAAG
560 --A---T-GC---------AAACG
* * *
50962542 AAGTTGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTGAAACTTAAATTTTGA
1 AA---GTTCTCATGTCTTATGA-TTCTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGA
* * * * ** *
50962607 GGCTAAGTCCATTACGGAATCAAAGATAAAATATAATTTTTTAAGAGGTTAAAA-AAGAAATTTA
62 GGCGAAGT-CGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGAGGTTAAAATGA-AAATTTA
* * * * * * **
50962671 CTATGTGATGTATACCGAAATTCTTATGTCATATGATTTTTTTCATTTCATTTTTAAATATCAAA
125 CCATATGATGCATAGCGAAATTCTTATGTCATATAATTTTTTTAATTTCATTTTTAAATATTGAA
* *** * * * *
50962736 ACTCGAAA-TTTAAGGCGAAGTTGGTTACAGAATCAAAGATATAGTGTAAACTTTT-ACTAGGTT
190 ACTC-AAATTTTGAGGCGAAGTCCATTACGGAATCAAAGATAAAGTATAAATTTTTAAC-AGGTT
*
50962799 AAAAT-GAAATTTTACCATG-GAT--A-A-CGAAGGTCTCATGTCTTATG
253 AAAATGGAAA-TTTACCATGTGATGCATAGCGAAGTTCTCATGTCTTATG
50962843 TAAGTGTTGA
Statistics
Matches: 1722, Mismatches: 231, Indels: 149
0.82 0.11 0.07
Matches are distributed among these distances:
560 3 0.00
561 203 0.12
562 110 0.06
563 159 0.09
564 2 0.00
565 2 0.00
566 1 0.00
568 1 0.00
569 62 0.04
570 13 0.01
571 575 0.33
572 192 0.11
573 134 0.08
576 3 0.00
581 1 0.00
584 1 0.00
589 1 0.00
592 1 0.00
593 1 0.00
599 1 0.00
600 13 0.01
601 7 0.00
602 41 0.02
603 11 0.01
604 144 0.08
605 40 0.02
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (568 bp):
AAGTTCTCATGTCTTATGATTCTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGCG
AAGTCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGAGGTTAAAATGAAAATTTACCATAT
GATGCATAGCGAAATTCTTATGTCATATAATTTTTTTAATTTCATTTTTAAATATTGAAACTCAA
ATTTTGAGGCGAAGTCCATTACGGAATCAAAGATAAAGTATAAATTTTTAACAGGTTAAAATGGA
AATTTACCATGTGATGCATAGCGAAGTTCTCATGTCTTATGATTTTTTTTAATTTCATTTTTAAA
TATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACAAAATCAAAGATAAAGTATAAAATTTTAAG
AGGTTAAAATGGAAATTTACCATGTGATGCACAACGAAGTTCTCATGTCTTATGATTCTTTTTAA
TTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCGATTATAGAATCAAAGATAAAGT
ATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAAACG
Found at i:50962813 original size:142 final size:143
Alignment explanation
Indices: 50962548--50962810 Score: 325
Period size: 142 Copynumber: 1.9 Consensus size: 143
50962538 AAAGAAGTTG
* ** * * *
50962548 TTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTGAAACTTAAATTTTGAGGCTAA
1 TTCTTATGTCATATGATTTTTTTTAATTTCATTTTTAAATATCAAAACTGAAATTTTAAGGCGAA
* **
50962613 GTCCATTACGGAATCAAAGATAAAATATAATTTTTTAAGAGGTTAAAAAAGAAATTTACTATGTG
66 GTCCATTACAGAATCAAAGATAAAATATAAACTTTTAAGAGGTTAAAAAAGAAATTTACTATGTG
50962678 ATGTATACCGAAA
131 ATGTATACCGAAA
*
50962691 TTCTTATGTCATATGA-TTTTTTTCATTTCATTTTTAAATATCAAAACTCGAAA-TTTAAGGCGA
1 TTCTTATGTCATATGATTTTTTTTAATTTCATTTTTAAATATCAAAACT-GAAATTTTAAGGCGA
*** * * * ** *
50962754 AGTTGGTTACAGAATCAAAGATATAGTGTAAACTTTTACTAGGTT-AAAATGAAATTT
65 AGTCCATTACAGAATCAAAGATAAAATATAAACTTTTAAGAGGTTAAAAAAGAAATTT
50962811 TACCATGGAT
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
141 11 0.11
142 71 0.71
143 18 0.18
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (143 bp):
TTCTTATGTCATATGATTTTTTTTAATTTCATTTTTAAATATCAAAACTGAAATTTTAAGGCGAA
GTCCATTACAGAATCAAAGATAAAATATAAACTTTTAAGAGGTTAAAAAAGAAATTTACTATGTG
ATGTATACCGAAA
Found at i:50963587 original size:142 final size:141
Alignment explanation
Indices: 50963380--50964126 Score: 659
Period size: 142 Copynumber: 5.3 Consensus size: 141
50963370 TCATAGTTAT
* * * * * * * *
50963380 AGTAGAAAGTTTTATGAGGTTCAAATTGAAATTTACCATGTGATGCATAGTGAAGTTTTTC-TGT
1 AGTATAAAGTTTTAAGAGGTT-AAATGGAAATTTACAATGTGATGTATAATCAAG-TTCTCATGT
* * * * * ** **
50963444 TTTATGATATTTTTAATTTCATTCTTAAATATTAAAATTTGAATTTTGAGGTAAAGTTGGTTACA
64 TTTATGATCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTACA
*
50963509 GAATCAAAGATAA
129 GAATTAAAGATAA
* * * *
50963522 AGTATAAATTTTTAAGAGGTTAAGATGAAAATTTACAATGTGATGTATAAACAAGTTCTCGTGTT
1 AGTATAAAGTTTTAAGAGGTTAA-ATGGAAATTTACAATGTGATGTATAATCAAGTTCTCATGTT
*
50963587 TTATG---------A-TTC-TTTTTAAATATTGAAACTCGAATTTTGAGGC-ATAGACCGTTACA
65 TTATGATCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGA-AGTCCGTTACA
50963640 GAATTAAAGATAA
129 GAATTAAAGATAA
* * * * *
50963653 AGTATAAAATTTTAAGAGGTTACAATGGTAATTTACAATGTGATGCT-TAGTGAAGTTCTCGTGT
1 AGTATAAAGTTTTAAGAGGTTA-AATGGAAATTTACAATGTGATG-TATAATCAAGTTCTCATGT
* * * * * *
50963717 CTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAACTTTAAGGCGAAGTCCATTGC
64 TTTATGA-TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTAC
50963782 -GAAATTAAAGATAA
128 AG-AATTAAAGATAA
* * * * ** *
50963796 AATATAAAGTTTTAAGAGGTTAAAATGGTAATTTACAATTTGATACT-TTGTGAAGTTCTCATGT
1 AGTATAAAGTTTTAAGAGGTT-AAATGGAAATTTACAATGTGAT-GTATAATCAAGTTCTCATGT
* * * *
50963860 CTTATGATTCTTTTTAATTTCA-TTTTAATTATTGAAACTCGAACTTTGAGGCGAAGTTCGTTAC
64 TTTATGA-TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTAC
50963924 -GAAATTAAAGATAA
128 AG-AATTAAAGATAA
* * * * * *
50963938 AGTATAAAGTTTTAAGAGGTTAAATTGGAAATATACCATGTAATGCAT-AGCAGACTTCTCATGT
1 AGTATAAAGTTTTAAGAGGTTAAA-TGGAAATTTACAATGTGATGTATAATCA-AGTTCTCATGT
* * * * * * * *
50964002 TTTCTGATTTTTTTAATTTCGTTTTTAAATATTAAAATTTGAATTTCGAGGCGAAGTCGGTTACA
64 TTTATGATCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTACA
*
50964067 GAATCAAAGATAA
129 GAATTAAAGATAA
* * *
50964080 AGTATAAACTTTTAAAATGTTAAAATGGAAATTTACAATGTGATGTA
1 AGTATAAAGTTTTAAGAGGTT-AAATGGAAATTTACAATGTGATGTA
50964127 GAGCGAAGTT
Statistics
Matches: 501, Mismatches: 77, Indels: 54
0.79 0.12 0.09
Matches are distributed among these distances:
130 1 0.00
131 105 0.21
132 5 0.01
133 1 0.00
141 23 0.05
142 236 0.47
143 128 0.26
144 2 0.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (141 bp):
AGTATAAAGTTTTAAGAGGTTAAATGGAAATTTACAATGTGATGTATAATCAAGTTCTCATGTTT
TATGATCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTACAGA
ATTAAAGATAA
Found at i:50967085 original size:143 final size:141
Alignment explanation
Indices: 50966822--50967548 Score: 760
Period size: 143 Copynumber: 5.1 Consensus size: 141
50966812 GGGTGTTACA
* * * * *
50966822 GAAGTTCTCATGTCTTATAATATTTTTTTAATTTTCATTTTTAAATATTGAAACTCGAATTTTGT
1 GAAGTTCTTATGTCTTATGAT-TCTTTTTAA-TTTCA-TTTTAAATATTGAAACTTGAATTTTGA
* * * **
50966887 GGCGAAG-TCAGTTACAGAGTC-AAGATAAAGTATAAAATTTTGAGAGGTTCTAATGGAAATTTA
63 GGCGAAGTTC-GTTACA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA
*
50966950 CCATGTGATGCATAGC
126 CCATGTGATGCATAGT
* * *
50966966 GAAGTTCTTATGTCTTATGATTCTTTTTAATTTAAGTATTAAATATTGAAACTTGAATTTCGAGG
1 GAAGTTCTTATGTCTTATGATTCTTTTTAATTTCA-TTTTAAATATTGAAACTTGAATTTTGAGG
* *
50967031 CAAAGTTCGTTACGAAATCAAAGATAAAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCA
65 CGAAGTTCGTTAC-AAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
*
50967096 TGTAATGCATAGT
129 TGTGATGCATAGT
* * * * * *
50967109 GAAGTTCTTATGTATTATGGTTTTTTTTTTCAATATCATTTTTAAATATTGATAGTTGAATTTTG
1 GAAGTTCTTATGTCTTAT-G-ATTCTTTTT-AATTTCA-TTTTAAATATTGAAACTTGAATTTTG
* * * *
50967174 AGGCGAAGTTCGTTACAGAATAAAAGATAATGTCTAAATTTTAAAGAGGTTAAAATGGAAATTTA
62 AGGCGAAGTTCGTTACA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA
* * *
50967239 CTATGTGATGCATGGC
126 CCATGTGATGCATAGT
* * * * **
50967255 GAAGTTCTCATGTCTTATGGTTCTTTTTAATTTTATTTTCAAATATTGACACTCAAATTTTGAGG
1 GAAGTTCTTATGTCTTATGATTCTTTTTAATTTCATTTT-AAATATTGAAACTTGAATTTTGAGG
* * ** * * * *
50967320 CAAAGTCCGTTATGGAATCAAAGATAAAATATAAATTTTTAAAAGATTTAAATGGAAATTTACCA
65 CGAAGTTCGTTA-CAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
* **
50967385 TGTTATTTATAGT
129 TGTGATGCATAGT
* * *
50967398 GAAGTTCTTATGTCTTATTATTATTATTT-ATTTCATTTGTAAATATTAAAACTTGAATTTTGAG
1 GAAGTTCTTATGTCTTATGATTCTT-TTTAATTTCATTT-TAAATATTGAAACTTGAATTTTGAG
* * * **
50967462 GTGAAG-TCAGTTACAAAATCAAAGATATAGTATAAACTTTTAAGAGGTTAAAATAAAAATTTAC
64 GCGAAGTTC-GTTAC-AAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC
*
50967526 CATGTGATGCTTAGT
127 CATGTGATGCATAGT
50967541 GAAGTTCT
1 GAAGTTCT
50967549 CGTGTATTTT
Statistics
Matches: 478, Mismatches: 92, Indels: 27
0.80 0.15 0.05
Matches are distributed among these distances:
142 46 0.10
143 280 0.59
144 31 0.06
145 9 0.02
146 112 0.23
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (141 bp):
GAAGTTCTTATGTCTTATGATTCTTTTTAATTTCATTTTAAATATTGAAACTTGAATTTTGAGGC
GAAGTTCGTTACAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATG
TGATGCATAGT
Found at i:50967375 original size:289 final size:284
Alignment explanation
Indices: 50966856--50967549 Score: 856
Period size: 289 Copynumber: 2.4 Consensus size: 284
50966846 TTTTTAATTT
* * * * *
50966856 TCATTTTTAAATATTGAAACTCGAATTTTGTGGCGAAGTCAGTTACAGAGTCAAGATAAAGTATA
1 TCATTTTTAAATATTGAAACTTGAATTTTGAGGCGAAGTCAGTTACAGAATAAAGATAATGTAT-
* ** *
50966921 AAATTTTGAGAGGTTCTAATGGAAATTTACCATGTGATGCATAGCGAAGTTCTTATGTCTTATGA
65 AAATTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGAAGTTCTCATGTCTTATGA
** *
50966986 TTCTTTTTAATTTAAGTATTAAATATTGAAACTTGAATTTCGAGGCAAAGTTCGTTACGAAATCA
130 TTCTTTTTAATTTAAGTATTAAATATTGAAACTCAAATTTCGAGGCAAAGTCCGTTACGAAATCA
* * * *
50967051 AAGATAAAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTAATGCATAGTGAAGTTC
195 AAGATAAAATATAAATTTTTAAAAGATTAAAATGGAAATTTACCATGTAATGCATAGTGAAGTTC
* *
50967116 TTATGTATTATGGT-TTTTTTTTTCAATA
260 TTATGTATTAT--TATTATTATTT--ATA
* * *
50967144 TCATTTTTAAATATTGATAGTTGAATTTTGAGGCGAAGTTC-GTTACAGAATAAAAGATAATGTC
1 TCATTTTTAAATATTGAAACTTGAATTTTGAGGCGAAG-TCAGTTACAGAAT-AAAGATAATGTA
* *
50967208 TAAATTTTAAAGAGGTTAAAATGGAAATTTACTATGTGATGCATGGCGAAGTTCTCATGTCTTAT
64 TAAATTTT-AAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGAAGTTCTCATGTCTTAT
* * * * * * *
50967273 GGTTCTTTTTAATTTTA-TTTTCAAATATTGACACTCAAATTTTGAGGCAAAGTCCGTTATGGAA
128 GATTCTTTTTAATTTAAGTATT-AAATATTGAAACTCAAATTTCGAGGCAAAGTCCGTTACGAAA
* * **
50967337 TCAAAGATAAAATATAAATTTTTAAAAGATTTAAATGGAAATTTACCATGTTATTTATAGTGAAG
192 TCAAAGATAAAATATAAATTTTTAAAAGATTAAAATGGAAATTTACCATGTAATGCATAGTGAAG
* *
50967402 TTCTTATGTCTTATTATTATTATTTATT
257 TTCTTATGTATTATTATTATTATTTATA
* * * *
50967430 TCATTTGTAAATATTAAAACTTGAATTTTGAGGTGAAGTCAGTTACAAAATCAAAGAT-ATAGTA
1 TCATTTTTAAATATTGAAACTTGAATTTTGAGGCGAAGTCAGTTACAGAAT-AAAGATAAT-GTA
** * *
50967494 TAAACTTTTAAGAGGTTAAAATAAAAATTTACCATGTGATGCTTAGTGAAGTTCTC
64 TAAA-TTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGAAGTTCTC
50967550 GTGTATTTTG
Statistics
Matches: 348, Mismatches: 50, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
285 4 0.01
286 97 0.28
287 5 0.01
288 60 0.17
289 182 0.52
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (284 bp):
TCATTTTTAAATATTGAAACTTGAATTTTGAGGCGAAGTCAGTTACAGAATAAAGATAATGTATA
AATTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGAAGTTCTCATGTCTTATGAT
TCTTTTTAATTTAAGTATTAAATATTGAAACTCAAATTTCGAGGCAAAGTCCGTTACGAAATCAA
AGATAAAATATAAATTTTTAAAAGATTAAAATGGAAATTTACCATGTAATGCATAGTGAAGTTCT
TATGTATTATTATTATTATTTATA
Found at i:50968546 original size:143 final size:143
Alignment explanation
Indices: 50968376--50969326 Score: 1004
Period size: 143 Copynumber: 6.7 Consensus size: 143
50968366 GAGAAGTTGG
* * *
50968376 TTACAGAATCAAA-AGTAAAGTATAAATTTTTAAAAGGTTCAAATGGAAATTTACAATGTGATGC
1 TTACGGAATCAAAGA-TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGC
* *
50968440 ATAGCAAAGTGCTCATGTCTTATGATTCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTT
65 ATAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTT
50968505 TGAGGCAAAGTCCA
130 TGAGGCAAAGTCCA
* * * * *
50968519 TTACGGAATTATAGATAAAATATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCA
1 TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* * * * * * *
50968584 TAGCAAACTTCTCATG--TAATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTC
66 TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTT
* * *
50968647 GAGACTAAGTCGA
131 GAGGCAAAGTCCA
** * * * * * *
50968660 TTACATAATCAAATATAGACTATAAATTTTTAAAAGGTTAAAATGAAAATTTACAATGTGATACA
1 TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* ** * *
50968725 T-GACGAAGTTCTTGTGTCTTATGATTCTTTTTAATTTCATTTTTAACTATTGAAACTCGAATTG
66 TAG-CAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTT
* *
50968789 TGAGG-AGAACTCTA
130 TGAGGCA-AAGTCCA
* * * * * *
50968803 TTACGAAATGAAAGATAAAGTATAAATTTTTAAGACGTTAAAATGGAAATATACCATTTGATGCA
1 TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* * * * * * *
50968868 TAGCACAGTTCTCATGTTTTATGA-TCATTTTAATTTCATTTTTAAATATTAAAATTTGAATTTA
66 TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTT
**
50968932 GAGGCAAAGTCGG
131 GAGGCAAAGTCCA
** * * * * * * *
50968945 TTATAGAATCAAAGGTAAAGTATAAAATTTTGAGACGTTCAAATGAAAATTTACCATGTGATGCA
1 TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* * * * * *
50969010 TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAAATATTCAAACTTGAATTTC
66 TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTT
* *
50969075 GAGGCGAAGTTCA
131 GAGGCAAAGTCCA
* * * *
50969088 TTACGGGATCAAAGAAAAAGTATATATTTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGC
1 TTACGGAATCAAAGATAAAGTATA-AATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGC
* * * *
50969153 ATAGCGAAGTTCTCATG---TATGAATCATTTTAATTTCATTATTAAATATTGAAACTCGAATTT
65 ATAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTT
*
50969215 TGAGGAAAAGTCCA
130 TGAGGCAAAGTCCA
* * * * * * *
50969229 TTA-GGAATTATAGACAAAGTATAAGTTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCA
1 TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* *** *
50969293 TAGCAAACTTCTTGGGTCTTATGATTCTTATTAA
66 TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAA
50969327 GATATAGTGT
Statistics
Matches: 657, Mismatches: 139, Indels: 25
0.80 0.17 0.03
Matches are distributed among these distances:
139 47 0.07
140 17 0.03
141 167 0.25
142 129 0.20
143 247 0.38
144 50 0.08
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (143 bp):
TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTT
GAGGCAAAGTCCA
Found at i:50968846 original size:284 final size:281
Alignment explanation
Indices: 50968336--50969326 Score: 1087
Period size: 284 Copynumber: 3.5 Consensus size: 281
50968326 TTGGAAGTTT
* * * * * *
50968336 ATTTTTAAAAATTTAAATTTAAATTTCGAGGAGAAGTTGGTTACAGAATCAAA-AGTAAAGTATA
1 ATTTTTAAATATTAAAATTCAAATTTCGAGGAAAAGTCGATTACAGAATCAAAGA-TAAAGTATA
* * *
50968400 AATTTTTAAAAGGTTCAAATGGAAATTTACAATGTGATGCATAGCAAAGTGCTCATGTCTTATGA
65 AATTTTTAAAAGGTTAAAATGAAAATTTACAATGTGATGCATAGCAAAGTTCTCATGTCTTATGA
* * *
50968465 TTCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCA-AAGTCCATTACGGAATT
130 TTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAA-TTTGAGG-AGAAGTCTATTACGGAATC
* * *
50968529 ATAGATAAAATATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCATAGCAAACTT
193 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCATAGCAAAGTT
**
50968594 CTCATGTAATGATTTTTTTTAATTTC
258 CTCATGT-ATGA-TCATTTTAATTTC
* * * * *
50968620 ATTTTTAAATATTAAAATTCAAATTTCGA-GACTAAGTCGATTACATAATCAAATATAGACTATA
1 ATTTTTAAATATTAAAATTCAAATTTCGAGGA-AAAGTCGATTACAGAATCAAAGATAAAGTATA
* * **
50968684 AATTTTTAAAAGGTTAAAATGAAAATTTACAATGTGATACAT-GACGAAGTTCTTGTGTCTTATG
65 AATTTTTAAAAGGTTAAAATGAAAATTTACAATGTGATGCATAG-CAAAGTTCTCATGTCTTATG
* * * *
50968748 ATTCTTTTTAATTTCATTTTTAACTATTGAAACTCGAATTGTGAGGAGAACTCTATTACGAAATG
129 ATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATT-TGAGGAGAAGTCTATTACGGAATC
* * * * *
50968813 AAAGATAAAGTATAAATTTTTAAGACGTTAAAATGGAAATATACCATTTGATGCATAGCACAGTT
193 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCATAGCAAAGTT
50968878 CTCATGTTTTATGATCATTTTAATTTC
258 CTCATG---TATGATCATTTTAATTTC
** * * * * *
50968905 ATTTTTAAATATTAAAATTTGAATTTAGAGGCAAAGTCGGTTATAGAATCAAAGGTAAAGTATAA
1 ATTTTTAAATATTAAAATTCAAATTTCGAGGAAAAGTCGATTACAGAATCAAAGATAAAGTATAA
* * * * * *
50968970 AATTTTGAGACGTTCAAATGAAAATTTACCATGTGATGCATAGCAAAGTTCTCATGTCTTATGAT
66 ATTTTTAAAAGGTTAAAATGAAAATTTACAATGTGATGCATAGCAAAGTTCTCATGTCTTATGAT
* * * * * * *
50969035 TCTTTTTAATTTAAATATTAAATATTCAAACTTGAATTTCGAGGCGAAGT-TCATTACGGGATCA
131 TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTT-GAGGAGAAGTCT-ATTACGGAATCA
* * * *
50969099 AAGAAAAAGTATATATTTTTTAAGAGGTTAAAAT-AGAAATTTACAATGTGATGCATAGCGAAGT
194 AAGATAAAGTATA-AATTTTTAAGAGGTTAAAATGA-AAATTTACCATGTGATGCATAGCAAAGT
50969163 TCTCATGTATGAATCATTTTAATTTC
257 TCTCATGTATG-ATCATTTTAATTTC
* * * * * * * * * *
50969189 ATTATTAAATATTGAAACTCGAATTTTGAGGAAAAGTCCATTA-GGAATTATAGACAAAGTATAA
1 ATTTTTAAATATTAAAATTCAAATTTCGAGGAAAAGTCGATTACAGAATCAAAGATAAAGTATAA
* * * * * ***
50969253 GTTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATAGCAAACTTCTTGGGTCTTATGAT
66 ATTTTTAAAAGGTTAAAATGAAAATTTACAATGTGATGCATAGCAAAGTTCTCATGTCTTATGAT
*
50969318 TCTTATTAA
131 TCTTTTTAA
50969327 GATATAGTGT
Statistics
Matches: 591, Mismatches: 101, Indels: 31
0.82 0.14 0.04
Matches are distributed among these distances:
283 86 0.15
284 273 0.46
285 177 0.30
286 54 0.09
287 1 0.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (281 bp):
ATTTTTAAATATTAAAATTCAAATTTCGAGGAAAAGTCGATTACAGAATCAAAGATAAAGTATAA
ATTTTTAAAAGGTTAAAATGAAAATTTACAATGTGATGCATAGCAAAGTTCTCATGTCTTATGAT
TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTGAGGAGAAGTCTATTACGGAATCAAA
GATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCATAGCAAAGTTCTC
ATGTATGATCATTTTAATTTC
Found at i:50969426 original size:86 final size:86
Alignment explanation
Indices: 50969254--50969412 Score: 219
Period size: 86 Copynumber: 1.8 Consensus size: 86
50969244 AAAGTATAAG
* * *
50969254 TTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATAGCAAACTTCTTGGGTCTTATGATT
1 TTTTTAAAAGGTTAAAAAGGAAATTTACAATGCGATGCACAGCAAACTTCTTGGGTCTTATGATT
50969319 CTTATTAAGATATAGTGTAAA
66 CTTATTAAGATATAGTGTAAA
* * * ** * *
50969340 TTTTTAAGATGTTAAAAAGGAAATTTACAATGTGATGCACAGTGAAGTTCTTGTGTCTTATGATT
1 TTTTTAAAAGGTTAAAAAGGAAATTTACAATGCGATGCACAGCAAACTTCTTGGGTCTTATGATT
*
50969405 CTTTTTAA
66 CTTATTAA
50969413 TTTCATTTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
86 62 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (86 bp):
TTTTTAAAAGGTTAAAAAGGAAATTTACAATGCGATGCACAGCAAACTTCTTGGGTCTTATGATT
CTTATTAAGATATAGTGTAAA
Found at i:50969546 original size:229 final size:225
Alignment explanation
Indices: 50969115--50969547 Score: 573
Period size: 229 Copynumber: 1.9 Consensus size: 225
50969105 AAGTATATAT
*
50969115 TTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCGAAGTTCTCATGTATGAATCAT
1 TTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCACAGCGAAGTTCTCATGTATGAATCAT
*
50969180 TTTAATTTCATTATTAAATATTGAAACTCGAATTTTGAGGAAAAGTCCATTAGGAATTATAGACA
66 TTTAATTTCATTATTAAATATTGAAACTCGAATTTTGAGGAAAAGTCCATTAGGAATTAAAGACA
* ** * * **
50969245 AAGTATAAGTTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATAGCAAACTTCTTGGGT
131 AAATATAAAATTTTAAAAGGTTAAAATAGAAATTTACCATGCGATGCATAGCAAACTTCCCGGGT
50969310 CTTATGATTCTTATTAAGATATAGTGTAAA
196 CTTATGATTCTTATTAAGATATAGTGTAAA
* * ** *
50969340 TTTTTAAGATGTTAAAA-AGGAAATTTACAATGTGATGCACAGTGAAGTTCTTGTGTCTTATGAT
1 TTTTTAAGAGGTTAAAATA-GAAATTTACAATGTGATGCACAGCGAAGTTCTCATG---TATGAA
* * ** **
50969404 TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTCT-AGGCGAAGTCGGTTATGGAATTA
62 TCATTTTAATTTCATTATTAAATATTGAAACTCGAATTT-TGAGGAAAAGTCCATTA-GGAATTA
* * *
50969468 AAGATAAAATATAAAATTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGCAAACTTC
125 AAGACAAAATATAAAATTTTAAAAGGTTAAAATAGAAATTTACCATGCGATGCATAGCAAACTTC
* *
50969533 CCGTGTTTTATGATT
190 CCGGGTCTTATGATT
50969548 TTTTAATTTC
Statistics
Matches: 177, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
224 1 0.01
225 48 0.27
228 53 0.30
229 75 0.42
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.37
Consensus pattern (225 bp):
TTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCACAGCGAAGTTCTCATGTATGAATCAT
TTTAATTTCATTATTAAATATTGAAACTCGAATTTTGAGGAAAAGTCCATTAGGAATTAAAGACA
AAATATAAAATTTTAAAAGGTTAAAATAGAAATTTACCATGCGATGCATAGCAAACTTCCCGGGT
CTTATGATTCTTATTAAGATATAGTGTAAA
Found at i:50969616 original size:141 final size:140
Alignment explanation
Indices: 50969325--50969959 Score: 683
Period size: 143 Copynumber: 4.5 Consensus size: 140
50969315 GATTCTTATT
* * * * ** *
50969325 AAGATATAGTGTAAATTTTTAAGATGTTAAAA-AGGAAATTTACAATGTGATGCACAGTGAAGTT
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATA-GAAATTTACAATGTGATGCATAGCAAACTT
* * * * *
50969389 CTTGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTCTAGGCGAAGT
65 CTCGTGTTTTATGA-TCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGT
*
50969454 CGGTTATGGAATTA
128 CGGTTAT-GAATCA
* * *
50969468 AAGATAAAATATAAAATTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGCAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTC
* * *
50969533 CCGTGTTTTATGAT-TTTTTAATTTCTTTTTTAAATATTAAAATTTGAATTTCGAGGCAACGTCG
66 TCGTGTTTTATGATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTCG
50969597 GTTATAGAATCA
130 GTTAT-GAATCA
* * *
50969609 AAGATAAAGTATAAATTTTTAAGAGGTTTAAATGGAAATTTA-TATGTGATGCATTA-CAAACTT
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCA-TAGCAAACTT
* * *
50969672 CTCGTGTTTTATGAT-TTTTTCAATTTAATTATT-AATATTAGAATTCGAATTTCGAGGCCAAGT
65 CTCGTGTTTTATGATCTTTTT-AATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGT
*
50969735 CGATTACTGAATCA
128 CGGTTA-TGAATCA
* * * * * *
50969749 AA-ATTAAAGTATAAATTTTTAAGAGGTTAAATTGGAAATTTAAAATGTGACGCAGAGCAAAGTT
1 AAGA-TAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTT
* * * * * * *
50969813 CTCGTGTATTATGAATCTTTTTAATTTCATTTTTAAGTATTGAAATTAGAATTTTGAAGCAAAGC
65 CTCGTGTTTTATG-ATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGT
* *
50969878 CCGTTATGAAATTA
128 CGGTTATG-AATCA
* * *
50969892 TAGATAAAGTATAAATTTTTAAAAGGTTAAAAT-GAAAATTTACCATGTGATGCATAGCAAACTT
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATAG-AAATTTACAATGTGATGCATAGCAAACTT
50969956 CTCG
65 CTCG
50969960 GGTCTTATTA
Statistics
Matches: 417, Mismatches: 59, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
139 1 0.00
140 112 0.27
141 132 0.32
142 17 0.04
143 153 0.37
144 2 0.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (140 bp):
AAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTC
TCGTGTTTTATGATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAGTCGG
TTATGAATCA
Found at i:50969662 original size:369 final size:369
Alignment explanation
Indices: 50968991--50969687 Score: 877
Period size: 369 Copynumber: 1.9 Consensus size: 369
50968981 GTTCAAATGA
* *
50968991 AAATTTACCATGTGATGCATAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAA
1 AAATTTACAATGTGATGCACAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAA
* * **
50969056 ATATTCAAACTTGAATTTCGAGGCGAAGTTCATTACGGGATCAAAGAAAAAGTATATATTTTTTA
66 ATATTCAAACTCGAATTTCGAGGCGAAGTTCATTACGGAATCAAAGAAAAAGTATATAAATTTTA
* * *
50969121 AGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCGAAGTTCTCATGTATGAATCATTTTAAT
131 AGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTCCCATGTATGAATCATTTTAAT
* * * * *
50969186 TTCATTATTAAATATTGAAACTCGAATTTTGAGGAAAAGTCCATTAGGAATTATAGACAAAGTAT
196 TTCATTATTAAATATTAAAACTCGAATTTCGAGGAAAAGTCCATTAAGAATCAAAGACAAAGTAT
* *
50969251 AAGTTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCA-TAGCAAACTTCTTGGGTCTTAT
261 AAATTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATTA-CAAACTTCTCGGGTCTTAT
50969315 GATTCTTATTAAGATATAGTGTAAATTTTTAAGATGTTAAAAAGG
325 GATTCTTATTAAGATATAGTGTAAATTTTTAAGATGTTAAAAAGG
** ** * * *
50969360 AAATTTACAATGTGATGCACAGTGAAGTTCTTGTGTCTTATGATTCTTTTTAATTTCATTTTTAA
1 AAATTTACAATGTGATGCACAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAA
* * * * *
50969425 ATATTGAAACTCGAATTTCTAGGCGAAG-TCGGTTATGGAATTAAAGATAAAA-TATA-AAATTT
66 ATATTCAAACTCGAATTTCGAGGCGAAGTTC-ATTACGGAATCAAAGA-AAAAGTATATAAATTT
* * *
50969487 TAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGCAAACTTCCCGTGTTTTATG-AT-TTT
129 TAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTCCCATG---TATGAATCATT
* * * * * * ** *
50969550 TTAATTTCTTTTTTAAATATTAAAATTTGAATTTCGAGGCAACGTCGGTTATAGAATCAAAGATA
191 TTAATTTCATTATTAAATATTAAAACTCGAATTTCGAGGAAAAGTCCATTA-AGAATCAAAGACA
* * * *
50969615 AAGTATAAATTTTTAAGAGGTTTAAATGGAAATTTA-TATGTGATGCATTACAAACTTCTCGTGT
255 AAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATTACAAACTTCTCGGGT
*
50969679 TTTATGATT
320 CTTATGATT
50969688 TTTTCAATTT
Statistics
Matches: 276, Mismatches: 45, Indels: 14
0.82 0.13 0.04
Matches are distributed among these distances:
368 52 0.19
369 170 0.62
370 50 0.18
371 4 0.01
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (369 bp):
AAATTTACAATGTGATGCACAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAA
ATATTCAAACTCGAATTTCGAGGCGAAGTTCATTACGGAATCAAAGAAAAAGTATATAAATTTTA
AGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTCCCATGTATGAATCATTTTAAT
TTCATTATTAAATATTAAAACTCGAATTTCGAGGAAAAGTCCATTAAGAATCAAAGACAAAGTAT
AAATTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATTACAAACTTCTCGGGTCTTATG
ATTCTTATTAAGATATAGTGTAAATTTTTAAGATGTTAAAAAGG
Found at i:50969848 original size:283 final size:284
Alignment explanation
Indices: 50969325--50969979 Score: 709
Period size: 283 Copynumber: 2.3 Consensus size: 284
50969315 GATTCTTATT
* * * * * * ** *
50969325 AAGATATAGTGTAAATTTTTAAGATGTTAAAAAGGAAATTTACAATGTGATGCACAGTGAAGTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * * *
50969390 TTGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATT-GAAACTCGAATTTCTAGGCGAAGT
66 TCGTGTCTTATGATTCTTTTTAATTTAATTTTT-AATATTAG-AACTCGAATTTCGAGGCCAAGT
* * *
50969454 CGGTTA-TGGAATTAAAGA-TAAAATATAAAATTTTAAGAGGTTAAAATAGAAATTTACCATGTG
129 C-GTTACT-GAATTAAAGATTAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTG
* * * * *
50969517 ATGCATAGCAAACTTCCCGTGTTTTATG-ATTTTTTAATTTCTTTTTTAAATATTAAAATTTGAA
192 ATGCAGAGCAAACTTCTCGTGTATTATGAATTTTTTAATTTCATTTTTAAATATTAAAATTCGAA
* * *
50969581 TTTCGAGGCAACGTCGGTTATAGAATCA
257 TTTCAAGGCAAAGTCGGTTACAGAATCA
* *
50969609 AAGATAAAGTATAAATTTTTAAGAGGTTTAAATGGAAATTTA-TATGTGATGCATTA-CAAACTT
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA-TAGCAAACTT
* * * *
50969672 CTCGTGTTTTATGATT-TTTTCAATTTAATTATTAATATTAGAATTCGAATTTCGAGGCCAAGTC
65 CTCGTGTCTTATGATTCTTTTTAATTTAATTTTTAATATTAGAACTCGAATTTCGAGGCCAAGTC
* * ** *
50969736 GATTACTGAATCAAA-ATTAAAGTATAAATTTTTAAGAGGTTAAATTGGAAATTTAAAATGTGAC
130 G-TTACTGAATTAAAGATTAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGAT
* * * *
50969800 GCAGAGCAAAGTTCTCGTGTATTATGAATCTTTTTAATTTCATTTTTAAGTATTGAAATTAGAAT
194 GCAGAGCAAACTTCTCGTGTATTATGAAT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAA-
* * * * *
50969865 TTTGAA-GCAAAGCCCGTTA-TGAAATTA
257 TTTCAAGGCAAAGTCGGTTACAG-AATCA
* * *
50969892 TAGATAAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACCATGTGATGCATAGCAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * *
50969957 TCGGGTCTTATTATTCTTCTTAA
66 TCGTGTCTTATGATTCTTTTTAA
50969980 GATATAGTGT
Statistics
Matches: 308, Mismatches: 51, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
280 2 0.01
281 98 0.32
282 19 0.06
283 112 0.36
284 72 0.23
285 5 0.02
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (284 bp):
AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
TCGTGTCTTATGATTCTTTTTAATTTAATTTTTAATATTAGAACTCGAATTTCGAGGCCAAGTCG
TTACTGAATTAAAGATTAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
AGAGCAAACTTCTCGTGTATTATGAATTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTC
AAGGCAAAGTCGGTTACAGAATCA
Found at i:50970415 original size:143 final size:143
Alignment explanation
Indices: 50970025--50971462 Score: 1256
Period size: 143 Copynumber: 10.1 Consensus size: 143
50970015 ATTTACATTG
* * * *
50970025 TGATTCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCAAAGTCCGTTACGGAA
1 TGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGAAA
* * * * ** *
50970090 TTATAGATAAAATATAAATTTTTAAGAGGTTAAAATGGAAGTTTACCACGTGATATATGGCAAA-
66 TTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAC
*
50970154 TTCTCATGTTTTA
131 TTCTCGTGTTTTA
* * * * * **
50970167 CGATT-TTTTTAATTTCATTTTTAAATATTAAAA-TCCGAATTTCGAGACTAAGTCGGGAAC-AA
1 TGATTCTTTTTAATTTCATTTTTAAATATTAAAACT-CGAATTTTGAGGCGAAGTCCGTTACGAA
* * * * *** *
50970229 ATCAAATATAAAGTATAAATTTTTAAAAGCTTAAAACAAAAATTTACCATGTGATACATAGCAAA
65 ATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAA
*
50970294 CTTCTCGTGTCTTA
130 CTTCTCGTGTTTTA
* * *
50970308 TGATTCTTTTTAATTTCATTTTTAACTATTAAAACTCGAATTTTGAGGCGAACTCCGTTATGAAA
1 TGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGAAA
* * * *
50970373 TGAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGAAGCACAACAAAC
66 TTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAC
* *
50970438 TACTAGTGTTTTA
131 TTCTCGTGTTTTA
* * ** *
50970451 TGA-T-TTTTTAATTTCGTTTTTAAATATTAAAATTCGAATTTCAAGGCAAAGT-CGATTAC-AG
1 TGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCG-TTACGA-
* * **
50970512 AATCAAAGATACAA-TATAAATTTTTAACAGGTTAAAATGGAAATTTAAAATGTGATGCATAGCA
64 AATTAAAGATA-AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCA
* * *
50970576 AAGTTCTCGTGTCTTC
128 AACTTCTCGTGTTTTA
* * * * * ** * * *
50970592 TGATT-GTTTTAAGTTT-ATTTATAAATATTGAAACTTGAATTTTAAGGCTTACTTCGTTACGGA
1 TGATTCTTTTTAA-TTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGAA
* * * *
50970655 ATTAAAGATAAAATACAAATTTTTAAGTA-GTTAAAATGGAAATTTACCATGCGATGCAT-GAAA
65 ATTAAAGATAAAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTACCATGTGATGCATAG-CA
* *
50970718 AACTTCTTGTGTTATA
128 AACTTCTCGTGTTTTA
* * * * **
50970734 TGAATCTTTTTAATTTTATTTTTAAATATTAAAACTCAAATTTCATGA--CGAAGTCGGTTATAA
1 TGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTT--TGAGGCGAAGTCCGTTACGA
* * * ** *
50970797 AATCAAAGAAAAAGTTAAAGTATATATTTTTAAGAGGTTAAAATGGAAATTCATAATTTGATGCA
64 AATTAAAG----A--TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
* *
50970862 TAGCGAAA-TTCTCATGTGTTA
123 TAGC-AAACTTCTCGTGTTTTA
* * * * * * *
50970883 TTATTCTTTTTAATTTAATTTTTTAATATTAAAACTCGAATTTTGAATG-GAAGTCTGTTATGGA
1 TGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTG-AGGCGAAGTCCGTTACGAA
* * * *
50970947 ATTAAATATAAAGTTTAAATATTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAA
65 ATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAA
* * *
50971012 CTTGTTGCGTTTTA
130 CTTCTCGTGTTTTA
* * * * * *
50971026 TGATT-TCATTTAATTTTATTTTTAAATATTAAAATTTG-ATTTTCAAGG-GAACGTCGGTTAC-
1 TGATTCT-TTTTAATTTCATTTTTAAATATTAAAACTCGAATTTT-GAGGCGAA-GTCCGTTACG
* * * *
50971087 AGAA-TCAAGATAAATTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-TATGTGATGCATTGC
63 A-AATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* *
50971150 AAACTTATTGTGTTTTA
127 AAACTTCTCGTGTTTTA
* * * ** * * * * * *
50971167 TGA---TTTTTATTTTAATTATTAAATATTAAAGTTCTAATTTCGAAGCCAAGTCAGTTACCAAA
1 TGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGAAA
** * * *
50971229 TTAAA-ATTAAAGTACCAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCGAA
66 TTAAAGA-TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAA
* *
50971293 GTTCTCGTGTATTA
130 CTTCTCGTGTTTTA
* * * * * * *
50971307 TGAATCTTTTTAATTTTATTTTTAAATATTGAAACTCGAATTTTAAGGCAAAGCCCGTTACGGAA
1 TGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGAAA
* * * *
50971372 TTATAGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTACCATGAGATGCATAACAAAC
66 TTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAC
* *
50971437 TTCTCGGGTCTTA
131 TTCTCGTGTTTTA
*
50971450 TGATTCTTCTTAA
1 TGATTCTTTTTAA
50971463 GATATAGCGT
Statistics
Matches: 1032, Mismatches: 218, Indels: 91
0.77 0.16 0.07
Matches are distributed among these distances:
138 37 0.04
139 45 0.04
140 85 0.08
141 205 0.20
142 211 0.20
143 331 0.32
144 1 0.00
145 3 0.00
147 3 0.00
148 2 0.00
149 105 0.10
150 4 0.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (143 bp):
TGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGAAA
TTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAC
TTCTCGTGTTTTA
Found at i:50970634 original size:283 final size:282
Alignment explanation
Indices: 50970025--50971454 Score: 1385
Period size: 283 Copynumber: 5.0 Consensus size: 282
50970015 ATTTACATTG
* * *
50970025 TGATTCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCAAAGTCCGTTACGGAA
1 TGATT-TTTTTAA-TTTATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGGAA
* * * * ** **
50970090 TTATAGATAAAATATAAATTTTTAAGAGGTTAAAATGGAAGTTTACCACGTGATATATGGCAAA-
64 TTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAACAAAC
* * * * * *
50970154 TTCTCA-TGTTTTACGATTTTTTTAATTTCATTTTTAAATATTAAAATCCGAATTTCGAGACTAA
129 TTCT-AGTGTTTTATGA-TTTTTTAATTTTATTTTTAAATATTAAAATTCGAATTTCAAGGCAAA
** * * *** **
50970218 GTCGGGAACA-AATCAAATATAAAGTATAAATTTTTAAAAGCTTAAAACAAAAATTTACCATGTG
192 GTCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTAAAATGTG
*
50970282 ATACATAGCAAACTTCTCGTGTCTTA
257 ATGCATAGCAAACTTCTCGTGTCTTA
* * * *
50970308 TGATTCTTTTTAATTTCATTTTTAACTATTAAAACTCGAATTTTGAGGCGAACTCCGTTATGAAA
1 TGATT-TTTTTAATTT-ATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGGAA
* * *
50970373 TGAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGAAGCACAACAAAC
64 TTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAACAAAC
* **
50970438 TACTAGTGTTTTATGATTTTTTAATTTCGTTTTTAAATATTAAAATTCGAATTTCAAGGCAAAGT
129 TTCTAGTGTTTTATGATTTTTTAATTTTATTTTTAAATATTAAAATTCGAATTTCAAGGCAAAGT
* *
50970503 CGATTACAGAATCAAAGATACAA-TATAAATTTTTAACAGGTTAAAATGGAAATTTAAAATGTGA
194 CGGTTACAGAATCAAAGATA-AAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTAAAATGTGA
* *
50970567 TGCATAGCAAAGTTCTCGTGTCTTC
258 TGCATAGCAAACTTCTCGTGTCTTA
* * * * * ** * *
50970592 TGATTGTTTTAAGTTTATTTATAAATATTGAAACTTGAATTTTAAGGCTTACTTCGTTACGGAAT
1 TGATTTTTTTAA-TTTATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGGAAT
* * *
50970657 TAAAGATAAAATACAAATTTTTAAGTA-GTTAAAATGGAAATTTACCATGCGATGCATGAA-AAA
65 TAAAGATAAAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTACCATGTGATGCAT-AACAAA
* * * * * * *
50970720 CTTCTTGTGTTATATGAATCTTTTTAATTTTATTTTTAAATATTAAAACTCAAATTTCATGACGA
128 CTTCTAGTGTTTTATG-AT-TTTTTAATTTTATTTTTAAATATTAAAATTCGAATTTCAAGGCAA
* * * * *
50970785 AGTCGGTTATAAAATCAAAGAAAAAGTTAAAGTATATATTTTTAAGAGGTTAAAATGGAAATTCA
191 AGTCGGTTACAGAATCAAAG----A--TAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTA
* * * *
50970850 TAATTTGATGCATAGCGAAA-TTCTCATGTGTTA
250 AAATGTGATGCATAGC-AAACTTCTCGTGTCTTA
* * * * *
50970883 TTATTCTTTTTAATTTAATTTTTTAATATTAAAACTCGAATTTTGAATG-GAAGTCTGTTATGGA
1 TGATT-TTTTTAATTT-ATTTTTAAATATTAAAACTCGAATTTTG-AGGCGAAGTCCGTTACGGA
* * *
50970947 ATTAAATATAAAGTTTAAATATTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGA-AA
63 ATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA-ACAA
* * * * * *
50971011 ACTTGTTGCGTTTTATGATTTCATTTAATTTTATTTTTAAATATTAAAATTTGATTTTCAAGGGA
127 ACTTCTAGTGTTTTATGATTT--TTTAATTTTATTTTTAAATATTAAAATTCGAATTTCAAGGCA
* * * *
50971076 ACGTCGGTTACAGAATC-AAGATAAATTATAAATTTTTAAGAGGTTAAAATGGAAATTT-ATATG
190 AAGTCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTAAAATG
* * * *
50971139 TGATGCATTGCAAACTTATTGTGTTTTA
255 TGATGCATAGCAAACTTCTCGTGTCTTA
* * ** * * * * * **
50971167 TGATTTTTATT--TTAATTATTAAATATTAAAGTTCTAATTTCGAAGCCAAGTCAGTTACCAAAT
1 TGATTTTT-TTAATTTATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGGAAT
** * * * * *
50971230 TAAA-ATTAAAGTACCAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCGAAG
65 TAAAGA-TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAACAAAC
* * * * *
50971294 TTCTCGTGTATTATGAATCTTTTTAATTTTATTTTTAAATATTGAAACTCGAATTTTAAGGCAAA
129 TTCTAGTGTTTTATG-AT-TTTTTAATTTTATTTTTAAATATTAAAATTCGAATTTCAAGGCAAA
* * * * * ** *
50971359 GCCCGTTACGGAATTATAGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTACCATGAG
192 GTCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTAAAATGTG
* *
50971424 ATGCATAACAAACTTCTCGGGTCTTA
257 ATGCATAGCAAACTTCTCGTGTCTTA
50971450 TGATT
1 TGATT
50971455 CTTCTTAAGA
Statistics
Matches: 941, Mismatches: 172, Indels: 68
0.80 0.15 0.06
Matches are distributed among these distances:
280 3 0.00
281 145 0.15
282 44 0.05
283 305 0.32
284 118 0.13
285 91 0.10
287 1 0.00
289 1 0.00
290 4 0.00
291 70 0.07
292 157 0.17
293 2 0.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (282 bp):
TGATTTTTTTAATTTATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCCGTTACGGAATT
AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAACAAACTT
CTAGTGTTTTATGATTTTTTAATTTTATTTTTAAATATTAAAATTCGAATTTCAAGGCAAAGTCG
GTTACAGAATCAAAGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTAAAATGTGATGC
ATAGCAAACTTCTCGTGTCTTA
Found at i:50971374 original size:424 final size:422
Alignment explanation
Indices: 50970029--50971454 Score: 1371
Period size: 424 Copynumber: 3.3 Consensus size: 422
50970019 ACATTGTGAT
* * * *
50970029 TCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCAAAGTCCGTTACGGAATTAT
1 TCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTAAGGCAAAGTCCGTTACGGAATTAA
* * * ** * *
50970094 AGATAAAATATAAATTTTTAAGAGGTTAAAATGGAAGTTTACCACGTGATATATGGCAAA-TTCT
66 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCT
* * * ** * * *
50970158 CATGTTTTACGATTTTTTTAATTTCATTTTTAAATATTAAAATCCGAATTTCGAGACTAA-GTCG
131 CGTGTTTTATGA-TTTTTTAATTTTATTTTTAAATATTAAAATTTGATTTTCAAG-GTAACGTCG
** * * *** *
50970222 GGAACA-AATCAA-ATATAAAGTATAAATTTTTAAAAGCTTAAAACAAAAATTTACCATGTGATA
194 GTTACAGAATCAAGATA-AAA-TATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
* * * * * *
50970285 CATAGCAAACTTCTCGTGTCTTATGATTCTTTTTAATTTCATTTTTAACTATTAAAACTCGAATT
257 CATTGCAAACTTCTTGTGTTTTATGA-T-TTTTT-ATTTTATTTTTAAATATTAAAACTCAAATT
* * * * * *
50970350 TTGAGGCGAACTCCGTTATGAAATGAAAGA-TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAA
319 TCGAAGCGAAGTCAGTTATCAAAT-AAAAATTAAAGTA-AAATTTTTAAGAGGTTAAAATGGAAA
* * * * * * *
50970414 TTTACCATGTGAAGCACAAC-AAACTACTAGTGTTTTATG-A
382 TTTACAATGTGATGCATAGCGAAA-TTCTCGTGTATTATGAA
* * * * *
50970454 T-TTTTTAATTTCGTTTTTAAATATTAAAATTCGAATTTCAAGGCAAAGT-CGATTACAGAATCA
1 TCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTAAGGCAAAGTCCG-TTACGGAATTA
* ** * *
50970517 AAGATACAA-TATAAATTTTTAACAGGTTAAAATGGAAATTTAAAATGTGATGCATAGCAAAGTT
65 AAGATA-AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTT
* * * * * * * *
50970581 CTCGTGTCTTCTGATTGTTTTAAGTTTATTTATAAATATTGAAACTTGAATTTT-AAGGCTTACT
129 CTCGTGTTTTATGATT-TTTTAATTTTATTTTTAAATATTAAAATTTG-ATTTTCAAGG-TAACG
* * * *
50970645 TC-GTTACGGAATTAAAGATAAAATACAAATTTTTAAGTA-GTTAAAATGGAAATTTACCATGCG
191 TCGGTTACAGAA-TCAAGATAAAATATAAATTTTTAAG-AGGTTAAAATGGAAATTTACCATGTG
* *
50970708 ATGCA-TGAAAAACTTCTTGTGTTATATGAATCTTTTTAATTTTATTTTTAAATATTAAAACTCA
254 ATGCATTG-CAAACTTCTTGTGTTTTATG-AT-TTTTT-ATTTTATTTTTAAATATTAAAACTCA
* * * *
50970772 AATTTC-ATGACGAAGTCGGTTATAAAATCAAAGAAAAAGTTAAAGTATATATTTTTAAGAGGTT
315 AATTTCGAAG-CGAAGTCAG-T-T---ATCAAATAAAAA-TTAAAGTA-AAATTTTTAAGAGGTT
* * * * * * *
50970836 AAAATGGAAATTCATAATTTGATGCATAGCGAAATTCTCATGTGTTATTAT
372 AAAATGGAAATTTACAATGTGATGCATAGCGAAATTCTCGTGTATTATGAA
* * * *
50970887 TCTTTTTAATTTAATTTTTTAATATTAAAACTCGAATTTTGAATGG--AAGTCTGTTATGGAATT
1 TCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTT-AA-GGCAAAGTCCGTTACGGAATT
* * *
50970950 AAATATAAAGTTTAAATATTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTT
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTT
* * * *
50971015 GTTGCGTTTTATGATTTCATTTAATTTTATTTTTAAATATTAAAATTTGATTTTCAAGGGAACGT
129 CTCGTGTTTTATGATTT--TTTAATTTTATTTTTAAATATTAAAATTTGATTTTCAAGGTAACGT
* *
50971080 CGGTTACAGAATCAAGATAAATTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-TATGTGATG
192 CGGTTACAGAATCAAGATAAAATATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
* * ** *
50971144 CATTGCAAACTTATTGTGTTTTATGA-TTTTTATTTTAATTATTAAATATTAAAGTTCTAATTTC
257 CATTGCAAACTTCTTGTGTTTTATGATTTTTTATTTT-ATTTTTAAATATTAAAACTCAAATTTC
* * * * *
50971208 GAAGCCAAGTCAGTTACCAAATTAAAATTAAAGTACCAATTTTTAAGAGGTTAAAATAGAAATTT
321 GAAGCGAAGTCAGTTATCAAATAAAAATTAAAGTA-AAATTTTTAAGAGGTTAAAATGGAAATTT
*
50971273 ACAATGTGATGCATAGCGAAGTTCTCGTGTATTATGAA
385 ACAATGTGATGCATAGCGAAATTCTCGTGTATTATGAA
* * * *
50971311 TCTTTTTAATTTTATTTTTAAATATTGAAACTCGAATTTTAAGGCAAAGCCCGTTACGGAATTAT
1 TCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTAAGGCAAAGTCCGTTACGGAATTAA
* *
50971376 AGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTACCATGAGATGCATA-ACAAACTTC
66 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGA-AAACTTC
* *
50971440 TCGGGTCTTATGATT
130 TCGTGTTTTATGATT
50971455 CTTCTTAAGA
Statistics
Matches: 812, Mismatches: 150, Indels: 79
0.78 0.14 0.08
Matches are distributed among these distances:
422 2 0.00
423 5 0.01
424 286 0.35
425 58 0.07
426 102 0.13
427 9 0.01
428 5 0.01
429 6 0.01
430 39 0.05
431 7 0.01
432 57 0.07
433 34 0.04
434 159 0.20
435 41 0.05
436 2 0.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (422 bp):
TCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTAAGGCAAAGTCCGTTACGGAATTAA
AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCT
CGTGTTTTATGATTTTTTAATTTTATTTTTAAATATTAAAATTTGATTTTCAAGGTAACGTCGGT
TACAGAATCAAGATAAAATATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATT
GCAAACTTCTTGTGTTTTATGATTTTTTATTTTATTTTTAAATATTAAAACTCAAATTTCGAAGC
GAAGTCAGTTATCAAATAAAAATTAAAGTAAAATTTTTAAGAGGTTAAAATGGAAATTTACAATG
TGATGCATAGCGAAATTCTCGTGTATTATGAA
Found at i:50971611 original size:196 final size:196
Alignment explanation
Indices: 50971277--50971636 Score: 567
Period size: 196 Copynumber: 1.8 Consensus size: 196
50971267 AAATTTACAA
* * * * *
50971277 TGTGATGCATAGCGAAGTTCTCGTGTATTATGAATCTTTTTAATTTTATTTTTAAATATTGAAAC
1 TGTGATGCATAGCAAAATGCTCGTGTATTATGAATCTTTTTAACTTCATTTTTAAATATTGAAAC
* * *
50971342 TCGAATTTTAAGGCAAAGCCCGTTACGGAATTATAGATAAAGTATAAATTTTTAAAAGGTTAAAA
66 TCGAATTTTAAGACAAAGCCCGTTACGAAATTATAGATAAAGTATAAATTTTTAAAAGATTAAAA
50971407 TGGAAATTTACCATGAGATGCATAACAAACTTCTCGGGTCTTATGATTCTTCTTAAGATATAGCG
131 TGGAAATTTACCATGAGATGCATAACAAACTTCTCGGGTCTTATGATTCTTCTTAAGATATAGCG
50971472 T
196 T
* * *
50971473 TGTGATGCATATCAAAATGCTCGTGTCTTATGATTCTTTTTAACTTCATTTTTAAATATTGAAAC
1 TGTGATGCATAGCAAAATGCTCGTGTATTATGAATCTTTTTAACTTCATTTTTAAATATTGAAAC
* * *
50971538 TCGAATTTTGAGACAAAGTCCGTTACGAAATTATAGATAAAGTATAAATTTTTAAGAGATTAAAA
66 TCGAATTTTAAGACAAAGCCCGTTACGAAATTATAGATAAAGTATAAATTTTTAAAAGATTAAAA
* **
50971603 TGGAAATTTACCATGTGATGCATGGCAAACTTCT
131 TGGAAATTTACCATGAGATGCATAACAAACTTCT
50971637 AGTGTTTTAT
Statistics
Matches: 147, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
196 147 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (196 bp):
TGTGATGCATAGCAAAATGCTCGTGTATTATGAATCTTTTTAACTTCATTTTTAAATATTGAAAC
TCGAATTTTAAGACAAAGCCCGTTACGAAATTATAGATAAAGTATAAATTTTTAAAAGATTAAAA
TGGAAATTTACCATGAGATGCATAACAAACTTCTCGGGTCTTATGATTCTTCTTAAGATATAGCG
T
Found at i:50971730 original size:142 final size:141
Alignment explanation
Indices: 50971473--50972402 Score: 787
Period size: 142 Copynumber: 6.6 Consensus size: 141
50971463 GATATAGCGT
* * * * * * * *
50971473 TGTGATGCATATCAAAATGCTCGTGTCTTATGATTCTTTTTAACTTCATTTTTAAATATTGAAAC
1 TGTGATGCATAGCAAACTTCTAGTGTTTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAAT
* * * * * *
50971538 TCGAATTTTGAGACAAAGTCCGTTAC-GAAATTATAGATAAAGTATAAATTTTTAAGAGATTAAA
64 TCGAATTTCGAGGCTAAGTCCGTTACAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAA
50971602 ATGGAAATTTACCA
128 ATGGAAATTTACCA
* *
50971616 TGTGATGCATGGCAAACTTCTAGTGTTTTATGAGTTTTTTAATTTTATTTTTAAATATTAAAATT
1 TGTGATGCATAGCAAACTTCTAGTGTTTTATGA-TTTTTTAATTTCATTTTTAAATATTAAAATT
* * * * * * * *
50971681 TGAAATTCGAGACTAAGTCGGGTACAGAATCAAATATAAAGTATAAATTTTTAAAAGGTTAAAAC
65 CGAATTTCGAGGCTAAGTCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAT
50971746 GGAAATTTACCA
130 GGAAATTTACCA
* * * * *
50971758 TGTGATGCATAGCAAACTT-T--TGTCTTATGATTCTTTTTAATTTCATTTTTGACTATTGAAAC
1 TGTGATGCATAGCAAACTTCTAGTGTTTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAAT
* * * * * *
50971820 TCGAATTTTGAGGCAAACTCCATTAC-GAAATGAAAGATAAAGTACAAATTTTTAAGAGGTTAAA
64 TCGAATTTCGAGGCTAAGTCCGTTACAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAA
*
50971884 ATGAAAATTTACCA
128 ATGGAAATTTACCA
* ** *
50971898 TGTGATGCATAGCAAACTTCTAGAGTTTTATGATTTTTTAATTTCGGTTTTAAATATTAAAATTA
1 TGTGATGCATAGCAAACTTCTAGTGTTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTC
* * * * * * * *
50971963 GAATTTCGAGGCCAAGTCAGCTATCA-AATAGAAAAAAAAACTATAAATTTTTAAGAGGTCAAAA
66 GAATTTCGAGGCTAAGTCCGTTA-CAGAAT-CAAAGATAAAGTATAAATTTTTAAGAGGTTAAAA
* *
50972027 AGGAAATTTACAA
129 TGGAAATTTACCA
* * * * *
50972040 TGTGACT-CATAGCTTAA-TTCTCA-TATCTTATGATTATTCTTAATTT-ATTTTTTCAATATTG
1 TGTGA-TGCATAGC-AAACTTCT-AGTGTTTTATGATT-TT-TTAATTTCA-TTTTTAAATATTA
* * * * * * *
50972101 AAACTCGAATTTTGAGGCGAACTCCGTTA-AGGATGTATAGATAAAGTATAAATTTTTAAGAGGT
60 AAATTCGAATTTCGAGGCTAAGTCCGTTACAGAAT-CAAAGATAAAGTATAAATTTTTAAGAGGT
50972165 TAAAATGGAAATTTACCA
124 TAAAATGGAAATTTACCA
* * * ** * * * * * *
50972183 TGTGGTGCATTGGAAACTAATTGTGTTTTTTGCTTATTTT-GTTTTATTTGTAAATATTAAAATT
1 TGTGATGCATAGCAAACTTCTAGTGTTTTATGATT-TTTTAATTTCATTTTTAAATATTAAAATT
* * * * *
50972247 CGATTTTCAAGG-TAAAGTCGGTTACAAAATCAAAGATAAAGTATAACTTTTTAAGAGGTT----
65 CGAATTTCGAGGCT-AAGTCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAA
* *
50972307 TTGAAATTTATCA
129 TGGAAATTTACCA
* * * * *
50972320 TGTGATTCATAGTAAACTTTTCGTGTTTTATGATTTTCTTAATTTCATTTTTAAATATTAAAAGT
1 TGTGATGCATAGCAAACTTCTAGTGTTTTATGATTTT-TTAATTTCATTTTTAAATATTAAAATT
* *
50972385 CGAATTTTGATGCTAAGT
65 CGAATTTCGAGGCTAAGT
50972403 GTAACACCCT
Statistics
Matches: 622, Mismatches: 140, Indels: 55
0.76 0.17 0.07
Matches are distributed among these distances:
136 2 0.00
137 39 0.06
138 32 0.05
139 12 0.02
140 104 0.17
141 107 0.17
142 182 0.29
143 105 0.17
144 39 0.06
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (141 bp):
TGTGATGCATAGCAAACTTCTAGTGTTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTC
GAATTTCGAGGCTAAGTCCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATG
GAAATTTACCA
Found at i:50972010 original size:282 final size:284
Alignment explanation
Indices: 50971496--50972192 Score: 924
Period size: 282 Copynumber: 2.5 Consensus size: 284
50971486 AAAATGCTCG
* * *
50971496 TGTCTTATGATTCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTTTGAGACAAAGTCCGT
1 TGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCAAACTCCGT
* *
50971561 TACGAAATTATAGATAAAGTATAAATTTTTAAGAGATTAAAATGGAAATTTACCATGTGATGCAT
66 TACGAAATGATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
* * * * *
50971626 GGCAAACTTCTAGTGTTTTATGAGTTTTTTAATTTTATTTTTAAATATTAAAATTTGAAATTCGA
131 AGCAAACTTCTAGAGTTTTATGAGTTTTTTAATTTCAGTTTTAAATATTAAAATTAGAAATTCGA
* * * * * * * *
50971691 GACTAAGTCGGGTACAGAATCAAATATAAAGTATAAATTTTTAAAAGGTTAAAACGGAAATTTAC
196 GACCAAGTCAGCTACAGAATCAAAAAAAAACTATAAATTTTTAAAAGGTCAAAAAGGAAATTTAC
*
50971756 CATGTGA-TGCATAGC-AAACTT-T-
261 AATGTGACT-CATAGCTAAA-TTCTA
* * *
50971778 TGTCTTATGATTCTTTTTAATTTCATTTTTGACTATTGAAACTCGAATTTTGAGGCAAACTCCAT
1 TGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCAAACTCCGT
* * *
50971843 TACGAAATGAAAGATAAAGTACAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCAT
66 TACGAAATGATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
* *
50971908 AGCAAACTTCTAGAGTTTTATGA-TTTTTTAATTTCGGTTTTAAATATTAAAATTAGAATTTCGA
131 AGCAAACTTCTAGAGTTTTATGAGTTTTTTAATTTCAGTTTTAAATATTAAAATTAGAAATTCGA
* * *
50971972 GGCCAAGTCAGCTATCA-AATAGAAAAAAAAACTATAAATTTTTAAGAGGTCAAAAAGGAAATTT
196 GACCAAGTCAGCTA-CAGAAT-CAAAAAAAAACTATAAATTTTTAAAAGGTCAAAAAGGAAATTT
*
50972036 ACAATGTGACTCATAGCTTAATTCTCA
259 ACAATGTGACTCATAGCTAAATTCT-A
* * * * *
50972063 TATCTTATGATTATTCTTAATTT-ATTTTTTCAATATTGAAACTCGAATTTTGAGGCGAACTCCG
1 TGTCTTATGATTCTTTTTAATTTCA-TTTTTAAATATTGAAACTCGAATTTTGAGGCAAACTCCG
* * *
50972127 TTAAG-GATGTATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGGTGC
65 TTACGAAATG-ATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
50972191 AT
129 AT
50972193 TGGAAACTAA
Statistics
Matches: 362, Mismatches: 44, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
281 49 0.14
282 194 0.54
283 4 0.01
284 4 0.01
285 111 0.31
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (284 bp):
TGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCAAACTCCGT
TACGAAATGATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
AGCAAACTTCTAGAGTTTTATGAGTTTTTTAATTTCAGTTTTAAATATTAAAATTAGAAATTCGA
GACCAAGTCAGCTACAGAATCAAAAAAAAACTATAAATTTTTAAAAGGTCAAAAAGGAAATTTAC
AATGTGACTCATAGCTAAATTCTA
Found at i:50972035 original size:620 final size:619
Alignment explanation
Indices: 50970855--50972037 Score: 1434
Period size: 620 Copynumber: 1.9 Consensus size: 619
50970845 ATTCATAATT
* * * * * *
50970855 TGATGCATAGCGAAATTCTCATGTGTTATTATTCTTTTTAATTTAATTTTTTAATATTAAAACTC
1 TGATGCATAGCAAAATGCTCATGTCTTATGATTCTTTTTAACTTAATTTTTAAATATTAAAACTC
** * * * * * *
50970920 GAATTTTGAATGGAAGTCTGTTATGGAATTAAATATAAAGTTTAAATATTTAAGAGGTTAAAATG
66 GAATTTTGAATCAAAGTCCGTTACGAAATTAAAGATAAAGTATAAATATTTAAGAGATTAAAATG
* *
50970985 GAAATTTACCATGTGATGCATAGAAAACTTGTTGCGTTTTATGATTTCATTTAATTTTATTTTTA
131 GAAATTTACCATGTGATGCATAGAAAACTTCTAGCGTTTTATGATTT-ATTTAATTTTATTTTTA
** * * *
50971050 AATATTAAAATTTGATTTTCAAGGGAACGTCGGTTACAGAATCAAGATAAATTATAAATTTTTAA
195 AATATTAAAATTTGAAATTCAAGCGAACGTCGGGTACAGAATCAAGATAAAGTATAAATTTTTAA
* * * * * * *
50971115 GAGGTTAAAATGGAAATTTATATGTGATGCATTGCAAACTTATTGTGTTTTATGATTTTTATTTT
260 AAGGTTAAAACGGAAATTTACATGTGATGCATAGCAAACTTATTGTCTTTGATGATTTTTAATTT
* * * * * *
50971180 AATTATTAAATATTAAAGTTCTAATTTCGAAGCCAAGTCAGTTACCAAATTAAAATTAAAGTACC
325 AATTATTAAATATTAAAGCTCGAATTTCGAAGCAAACTCAGTTACCAAATGAAAATTAAAGTACA
* * * *
50971245 AATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCGAAGTTCTCGTGTATTATGA
390 AATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTCTAGAGTATTATGA
* * * * * * * * *
50971310 ATCTTTTTAATTTTATTTTTAAATATTGAAACTCGAATTTTAAGGCAAAGCCCGTTACGGAATTA
455 ATCTTTTTAATTTCAGTTTTAAATATTAAAACTAGAATTTCAAGGCAAAGCCAGCTACGAAATGA
* * * * * *
50971375 TAGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTACCATGAGATGCATAACAAACTTC
520 AAAAAAAACTATAAATTTTTAAAAGGTCAAAAAGGAAATTTACCATGAGATGCATAACAAACTTC
50971440 TCGGGTCTTATGATTCTTCTTAAGATATAGCGTTG
585 TCGGGTCTTATGATTCTTCTTAAGATATAGCGTTG
* * * *
50971475 TGATGCATATCAAAATGCTCGTGTCTTATGATTCTTTTTAACTTCATTTTTAAATATTGAAACTC
1 TGATGCATAGCAAAATGCTCATGTCTTATGATTCTTTTTAACTTAATTTTTAAATATTAAAACTC
* *
50971540 GAATTTTGAGA-CAAAGTCCGTTACGAAATTATAGATAAAGTATAAATTTTTAAGAGATTAAAAT
66 GAATTTTGA-ATCAAAGTCCGTTACGAAATTAAAGATAAAGTATAAATATTTAAGAGATTAAAAT
* * *
50971604 GGAAATTTACCATGTGATGCATGGCAAACTTCTAGTGTTTTATGAGTTT-TTTAATTTTATTTTT
130 GGAAATTTACCATGTGATGCATAGAAAACTTCTAGCGTTTTATGA-TTTATTTAATTTTATTTTT
* * *
50971668 AAATATTAAAATTTGAAATTCGAGACTAA-GTCGGGTACAGAATCAAATATAAAGTATAAATTTT
194 AAATATTAAAATTTGAAATTCAAG-CGAACGTCGGGTACAGAATC-AAGATAAAGTATAAATTTT
**
50971732 TAAAAGGTTAAAACGGAAATTTACCATGTGATGCATAGCAAACTT-TTGTCTTATGATTCTTTTT
257 TAAAAGGTTAAAACGGAAATTTA-CATGTGATGCATAGCAAACTTATTGTCTT-TGATGATTTTT
* * * * * * *
50971796 AATTTCATTTTTGACTATTGAAA-CTCGAATTTTGAGGCAAACTCCA-TTACGAAATGAAAGA-T
320 AATTTAATTATTAAATATT-AAAGCTCGAATTTCGAAGCAAACT-CAGTTACCAAATGAAA-ATT
*
50971858 AAAGTACAAATTTTTAAGAGGTTAAAAT-GAAAATTTACCATGTGATGCATAGCAAACTTCTAGA
382 AAAGTACAAATTTTTAAGAGGTTAAAATAG-AAATTTACAATGTGATGCATAGCAAACTTCTAGA
* * * * * *
50971922 GTTTTATG-AT-TTTTTAATTTCGGTTTTAAATATTAAAATTAGAATTTCGAGGCCAAGTCAGCT
446 GTATTATGAATCTTTTTAATTTCAGTTTTAAATATTAAAACTAGAATTTCAAGGCAAAGCCAGCT
*
50971985 ATC-AAATAGAAAAAAAAACTATAAATTTTTAAGAGGTCAAAAAGGAAATTTAC
511 A-CGAAAT-GAAAAAAAAACTATAAATTTTTAAAAGGTCAAAAAGGAAATTTAC
50972038 AATGTGACTC
Statistics
Matches: 469, Mismatches: 82, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
619 95 0.20
620 234 0.50
621 134 0.29
622 6 0.01
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (619 bp):
TGATGCATAGCAAAATGCTCATGTCTTATGATTCTTTTTAACTTAATTTTTAAATATTAAAACTC
GAATTTTGAATCAAAGTCCGTTACGAAATTAAAGATAAAGTATAAATATTTAAGAGATTAAAATG
GAAATTTACCATGTGATGCATAGAAAACTTCTAGCGTTTTATGATTTATTTAATTTTATTTTTAA
ATATTAAAATTTGAAATTCAAGCGAACGTCGGGTACAGAATCAAGATAAAGTATAAATTTTTAAA
AGGTTAAAACGGAAATTTACATGTGATGCATAGCAAACTTATTGTCTTTGATGATTTTTAATTTA
ATTATTAAATATTAAAGCTCGAATTTCGAAGCAAACTCAGTTACCAAATGAAAATTAAAGTACAA
ATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTCTAGAGTATTATGAA
TCTTTTTAATTTCAGTTTTAAATATTAAAACTAGAATTTCAAGGCAAAGCCAGCTACGAAATGAA
AAAAAAACTATAAATTTTTAAAAGGTCAAAAAGGAAATTTACCATGAGATGCATAACAAACTTCT
CGGGTCTTATGATTCTTCTTAAGATATAGCGTTG
Found at i:50972589 original size:2 final size:2
Alignment explanation
Indices: 50972582--50972617 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
50972572 GACATAAATT
50972582 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
50972618 TATATATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:50978366 original size:143 final size:142
Alignment explanation
Indices: 50978209--50980048 Score: 1544
Period size: 143 Copynumber: 13.0 Consensus size: 142
50978199 CGTTGGTTAT
* * ** * * *
50978209 AGAATCAAACATAAAGTATAACCTTTAAAGATGTTAAAATGGAAATTTATC-ATGTGACGCATAG
1 AGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGTGATGCATAG
* *
50978273 GAAGTTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAA
65 GAAG-TTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAG
50978338 GCCAAGTCCATTAC
129 GCCAAGTCCATTAC
** * * * *
50978352 AGAAACAAAGATAAAGTACAAATTTTTACGAGGTTAAAATGAAAATTTACAATGTAATGCATAGT
1 AGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAG-
* * * * * *
50978417 GAAATTCTCATGTCTTATTG-TTGTTTTTAATTT-ATTGTTAGATATTGAAAA-TCGAATTTTGA
65 GAAGTTCTCGTGTTTTA-TGATTTTTTTTAATTTCATTTTTAAATATT-AAAATTCGAATTTTGA
* * * *
50978479 GTCGAACTCCATTAT
128 GGCCAAGTCCATTAC
* * * * * **
50978494 GGAATTAAAGATAAAGTATAATTTTTTAAGTGATTAAAATGGAAATTTACCATGTGATGCATATA
1 AGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGG
* * ** * ** * *
50978559 AATTTTCTCATGTTTTACAATTTTTTATAATTTCATTTTTAAATATTAAAATTTTAATTTCGATG
66 AA-GTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGG
** *
50978624 -CAATGTTGACTAC
130 CCAA-GTCCATTAC
* * * * *
50978637 AGAATCAAAAATAAATTATAAATTTTTAAGAGGATAAACTGGAAATTTACAATGTGATGCATAGG
1 AGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATA-G
** * * *
50978702 GAAGTTCTCGTGTCATATGA-TTGTTTT-A----A-TTTTAAATATTGAAA-CCGAATTTTGAGG
65 GAAGTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGG
* * **
50978759 CGAACTCTGTTAC
130 CCAAGTCCATTAC
* * * * * *
50978772 GGAATTAAAGATAAAGTATAACTTTTCAAGTGGTTAAAATGAAAATTTACCATGTGATGCATAGA
1 AGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAG-
* * * * * **
50978837 AAACTTCTCGTGTTTTATGAGTTTTTATAATTTCATTTTTAAATATTAAAATTTGAATTTCAAGG
65 GAAGTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGG
50978902 -CAAGGT-CAGTTAC
130 CCAA-GTCCA-TTAC
* * * * * * *
50978915 AGAATAAAAAATAAACTATAATTTTTTAAGAAGTTAATATGAAAATTTACAATGTGATGCATAGC
1 AGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAG-
* ** * * * * *
50978980 AAAGTTCTCGTGCCTTATGATTGTTTTTATTTTCATTTTTAAATATTGATACTCGAATTTTGAGG
65 GAAGTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGG
*
50979045 CCAAGTCCGTTA-
130 CCAAGTCCATTAC
* * *
50979057 TGTAATTAAAGACAAA-TATAAAATTTTAA-ATGGTTAAAATGGAAATTTA-ACATGTGATGCAT
1 AG-AATTAAAGATAAAGTATAAATTTTTAAGA-GGTTAAAATGGAAATTTACA-ATGTGATGCAT
* * * * * * *
50979119 AGCAAACTTCTAGTGTTTTATGA--TTTTTTAATTTCGTTATTAAATATTAAAATTCAAATCTTG
63 AG-GAAGTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTG
* *
50979182 AGTCCAAGTCAATTAC
127 AGGCCAAGTCCATTAC
* * * * *
50979198 CGAATAAAAAATAAAGTATAAATTCTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATCGC
1 AGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAG-
* * * * * * *
50979263 TAAGTTCTCGTGTTTTATGATTCTTTTTAATAT-A-TTTTCAATATTGAAACTCAAATTTTGAGG
65 GAAGTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGG
* * *
50979326 CGAAG-CCTGTTTC
130 CCAAGTCC-ATTAC
* * * * *
50979339 GGAATTAAAGAGAATGTATAAATTTTTAAGTTGG-TAAAATGGAAATTTACCATGTGATGCATAG
1 AGAATTAAAGATAAAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTACAATGTGATGCATAG
* * * * * * * * *
50979403 AAAACTTCTTGTGTTTTATAATTTTTTTTAAATTTCATCTCTAAATTTTAAAATTTGAATTTCGA
65 -GAAGTTCTCGTGTTTTATGATTTTTTTT-AATTTCATTTTTAAATATTAAAATTCGAATTTTGA
** * * *
50979468 GGTGAATTCAATTAT
128 GGCCAAGTCCATTAC
* * *
50979483 AGAATCAAATACAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGT
1 AGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAG-
** * * * *
50979548 GAAGTGGTTGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGGAACATT-GAATTTTGA
65 GAAGTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATT--AAAATTCGAATTTTGA
* *
50979612 GGCAAAGTCCTTTAC
128 GGCCAAGTCCATTAC
*
50979627 -GAAATTATAA-ATAAAGTAT-AACTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATA
1 AG-AATTA-AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATA
* * * * *
50979689 GTGAAGTGCTTGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGGAACATT-GAATTTT
64 G-GAAGTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATT--AAAATTCGAATTTT
* *
50979753 GAGGCAAAGTCCTTTAC
126 GAGGCCAAGTCCATTAC
* *
50979770 -GAAATTATAA-ATAAAGTATAACTTTTTAAGAGGTTAAAATGGAAATTTACAATCTGATGCATA
1 AG-AATTA-AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATA
* * * * *
50979833 GCGAAGTGCTCGTGTCTTATGATACTTTTTTAATTTCATTTTTAAATACTGAAACTT-GAATTTT
64 G-GAAGTTCTCGTGTTTTATGAT-TTTTTTTAATTTCATTTTTAAATA-TTAAAATTCGAATTTT
*
50979897 GAGGCAAAGTCCGA-TAC
126 GAGGCCAAGTCC-ATTAC
* *
50979914 -GAAATTATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTATC-ATGTGATGCATA
1 AG-AATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CAATGTGATGCATA
* * * * *
50979977 GCAAACTTCTAGTGTTTTATGA-TGTTTTT-ATTTCTTTTTTAAATATTAAAATTC-ATATTTTG
64 G-GAAGTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGA-ATTTTG
*
50980039 AGGTCAAGTC
127 AGGCCAAGTC
50980049 AGCAATAGAA
Statistics
Matches: 1371, Mismatches: 274, Indels: 106
0.78 0.16 0.06
Matches are distributed among these distances:
134 1 0.00
135 80 0.06
136 21 0.02
137 2 0.00
140 61 0.04
141 200 0.15
142 204 0.15
143 471 0.34
144 299 0.22
145 31 0.02
146 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (142 bp):
AGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGG
AAGTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGC
CAAGTCCATTAC
Found at i:50978699 original size:285 final size:283
Alignment explanation
Indices: 50978205--50980029 Score: 1854
Period size: 285 Copynumber: 6.4 Consensus size: 283
50978195 GCAACGTTGG
* * * ** * * *
50978205 TTATAGAATCAAACATAAAGTATAACCTTTAAAGAT-GTTAAAATGGAAATTTATCATGTGACGC
1 TTATGGAATTAAAGATAAAGTATAAATTTTTAAG-TGGTTAAAATGGAAATTTACCATGTGATGC
** *
50978269 ATAGGAAGTTTCTCGTGTTTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTT
65 ATA-GAAACTTCTCGTGTTTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTT
* * * * * *
50978334 CGAAGCCAAGTCCATTACAGAAACAAAGATAAAGTACAAATTTTTACGAGGTTAAAATGAAAATT
128 CGATG-CAAGTCCATTACAGAATCAAAAATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATT
* * * * *
50978399 TACAATGTAATGCATAGTGAAATTCTCATGTCTTATTG-TTGTTTTTAATTT-ATTGTTAGATAT
192 TACAATGTGATGCATAGTGAAGTTCTCGTGTCTTA-TGATTGTTTTTAATTTCATTTTTAAATAT
* *
50978462 TGAAAATCGAATTTTGAGTCGAACTCCA
256 TGAAAATCGAATTTTGAGGCGAAGTCCA
* *
50978490 TTATGGAATTAAAGATAAAGTATAATTTTTTAAGTGATTAAAATGGAAATTTACCATGTGATGCA
1 TTATGGAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGTGATGCA
* * * ** *
50978555 TATAAATTTTCTCATGTTTTACAATTTTTTATAATTTCATTTTTAAATATTAAAATTTTAATTTC
66 TAGAAA-CTTCTCGTGTTTTATGATTTTTT-TAATTTCATTTTTAAATATTAAAATTTGAATTTC
** * * * *
50978620 GATGCAATGTTGACTACAGAATCAAAAATAAATTATAAATTTTTAAGAGGATAAACTGGAAATTT
129 GATGCAA-GTCCATTACAGAATCAAAAATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTT
* *
50978685 ACAATGTGATGCATAGGGAAGTTCTCGTGTCATATGATTG-TTTT-A----A-TTTTAAATATTG
193 ACAATGTGATGCATAGTGAAGTTCTCGTGTCTTATGATTGTTTTTAATTTCATTTTTAAATATTG
* * **
50978743 -AAACCGAATTTTGAGGCGAACTCTG
258 AAAATCGAATTTTGAGGCGAAGTCCA
* * * *
50978768 TTACGGAATTAAAGATAAAGTATAACTTTTCAAGTGGTTAAAATGAAAATTTACCATGTGATGCA
1 TTATGGAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGTGATGCA
*
50978833 TAGAAAACTTCTCGTGTTTTATGAGTTTTTATAATTTCATTTTTAAATATTAAAATTTGAATTTC
66 TAG-AAACTTCTCGTGTTTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTC
* * * * * * * *
50978898 AAGGCAAGGT-CAGTTACAGAATAAAAAATAAACTATAATTTTTTAAGAAGTTAATATGAAAATT
129 GATGCAA-GTCCA-TTACAGAATCAAAAATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATT
** * *
50978962 TACAATGTGATGCATAGCAAAGTTCTCGTGCCTTATGATTGTTTTTATTTTCATTTTTAAATATT
192 TACAATGTGATGCATAGTGAAGTTCTCGTGTCTTATGATTGTTTTTAATTTCATTTTTAAATATT
* * * *
50979027 GATACTCGAATTTTGAGGCCAAGTCCG
257 GAAAATCGAATTTTGAGGCGAAGTCCA
* * * * *
50979054 TTATGTAATTAAAGACAAA-TATAAAATTTTAAATGGTTAAAATGGAAATTTAACATGTGATGCA
1 TTATGGAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGTGATGCA
* * * **
50979118 TAGCAAACTTCTAGTGTTTTATGA-TTTTTTAATTTCGTTATTAAATATTAAAATTCAAATCTT-
66 TAG-AAACTTCTCGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTTGAAT-TTC
* * * * *
50979181 GAGTCCAAGTCAATTACCGAATAAAAAATAAAGTATAAATTCTTAAGAGGTTAAAATGGAAATTT
129 GA-TGCAAGTCCATTACAGAATCAAAAATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTT
* * * * *
50979246 ACAATGTGATGCATCGCT-AAGTTCTCGTGTTTTATGATTCTTTTTAATAT-A-TTTTCAATATT
193 ACAATGTGATGCATAG-TGAAGTTCTCGTGTCTTATGATTGTTTTTAATTTCATTTTTAAATATT
* *
50979308 GAAACTCAAATTTTGAGGCGAAG-CC-
257 GAAAATCGAATTTTGAGGCGAAGTCCA
* * *
50979333 TGTTTCGGAATTAAAGAGAATGTATAAATTTTTAAGTTGG-TAAAATGGAAATTTACCATGTGAT
1 T-TAT-GGAATTAAAGATAAAGTATAAATTTTTAAG-TGGTTAAAATGGAAATTTACCATGTGAT
* * * * *
50979397 GCATAGAAAACTTCTTGTGTTTTATAATTTTTTTTAAATTTCATCTCTAAATTTTAAAATTTGAA
63 GCATAG-AAACTTCTCGTGTTTTATGA-TTTTTTT-AATTTCATTTTTAAATATTAAAATTTGAA
* * * * *
50979462 TTTCGAGGTG-AATTCAATTATAGAATCAAATACAAAGTATAAATTTTTAAGAGGTTAAAATGGA
125 TTTCGA--TGCAAGTCCATTACAGAATCAAAAATAAAGTATAAATTTTTAAGAGGTTAAAATGGA
** * *
50979526 AATTTACAATGTGATGCATAGTGAAGTGGTTGTGTCTTATGATTCTTTTTAATTTCATTTTTAAA
188 AATTTACAATGTGATGCATAGTGAAGTTCTCGTGTCTTATGATTGTTTTTAATTTCATTTTTAAA
* * * *
50979591 TATTGGAACATTGAATTTTGAGGCAAAGTCCT
253 TATT-GAAAATCGAATTTTGAGGCGAAGTCCA
* * * * *
50979623 TTACGAAATTATAA-ATAAAGTAT-AACTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGC
1 TTATGGAATTA-AAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGTGATGC
* * * * * *
50979686 ATAGTGAAGTGCTTGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGGAACA-TTGAAT
65 ATAG-AAACTTCTCGTGTTTTATGATT-TTTTTAATTTCATTTTTAAATATT--AAAATTTGAAT
* * * * * *
50979750 TTTGAGGCAAAGTCCTTTAC-GAAATTATAAATAAAGTATAACTTTTTAAGAGGTTAAAATGGAA
126 TTCGATGC-AAGTCCATTACAG-AATCAAAAATAAAGTATAAATTTTTAAGAGGTTAAAATGGAA
* * *
50979814 ATTTACAATCTGATGCATAGCGAAGTGCTCGTGTCTTATGATACT-TTTTTAATTTCATTTTTAA
189 ATTTACAATGTGATGCATAGTGAAGTTCTCGTGTCTTATGAT--TGTTTTTAATTTCATTTTTAA
* * * *
50979878 ATACTGAAACTTGAATTTTGAGGCAAAGTCCGA
252 ATATTGAAAATCGAATTTTGAGGCGAAGTCC-A
* * * * * *
50979911 -TACGAAATTATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTATCATGTGATGCA
1 TTATGGAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGTGATGCA
* * *
50979975 TAGCAAACTTCTAGTGTTTTATGATGTTTTT-ATTTCTTTTTTAAATATTAAAATT
66 TAG-AAACTTCTCGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATT
50980030 CATATTTTGA
Statistics
Matches: 1290, Mismatches: 201, Indels: 98
0.81 0.13 0.06
Matches are distributed among these distances:
277 1 0.00
278 215 0.17
279 23 0.02
280 5 0.00
281 42 0.03
282 60 0.05
283 125 0.10
284 37 0.03
285 377 0.29
286 77 0.06
287 208 0.16
288 113 0.09
289 6 0.00
290 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (283 bp):
TTATGGAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGTGATGCA
TAGAAACTTCTCGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGA
TGCAAGTCCATTACAGAATCAAAAATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACA
ATGTGATGCATAGTGAAGTTCTCGTGTCTTATGATTGTTTTTAATTTCATTTTTAAATATTGAAA
ATCGAATTTTGAGGCGAAGTCCA
Found at i:50981290 original size:20 final size:20
Alignment explanation
Indices: 50981267--50981310 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
50981257 TTATTCTGTA
* *
50981267 CATTATTCTGTTATGTGTTG
1 CATTATTCCGTTATGTGTCG
50981287 CATTATTCCGTTATGTGTCG
1 CATTATTCCGTTATGTGTCG
50981307 CATT
1 CATT
50981311 GGCACTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.16, G:0.18, T:0.50
Consensus pattern (20 bp):
CATTATTCCGTTATGTGTCG
Found at i:50982835 original size:40 final size:40
Alignment explanation
Indices: 50982758--50983019 Score: 393
Period size: 40 Copynumber: 6.6 Consensus size: 40
50982748 AAACCAAGTA
* * *
50982758 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
50982797 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
50982837 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
50982877 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATT
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
**
50982917 CCTTCGGGACTTAGCTTGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
50982957 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
50982997 CCTTTGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
50983020 CATTCGAATA
Statistics
Matches: 204, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 14 0.07
40 190 0.93
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:50996482 original size:19 final size:20
Alignment explanation
Indices: 50996458--50996495 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50996448 TTTGGCCCAT
50996458 TTTCTC-TATTTTTCGCTCG
1 TTTCTCATATTTTTCGCTCG
*
50996477 TTTCTCATTTTTTTCGCTC
1 TTTCTCATATTTTTCGCTC
50996496 TCTTATGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.05, C:0.26, G:0.08, T:0.61
Consensus pattern (20 bp):
TTTCTCATATTTTTCGCTCG
Found at i:51000855 original size:131 final size:131
Alignment explanation
Indices: 51000656--51001042 Score: 328
Period size: 144 Copynumber: 2.9 Consensus size: 131
51000646 TCTTTTGTTT
* * * * *
51000656 TATGAATTTTTTAATTTTATTTTTAAGTATTAAAATTCAAATTTCGAGTCGAAGTTAGTTACAAA
1 TATGAATTTTTTAAATTCATTTTTAAATATTAAAATTCAAATTTCGAGGCGAAGTTAGCTACAAA
** * * *
51000721 ATCAAAGATGCAGTATAAATTTTTAAGAAGT-TAGATGAAAATTTACAATGTGATGTGTAATGTC
66 ATCAAAGATAAAGTATAAATTTTTAAGAAGTCAAAATGAAAATTTACAATGAGATGTGTAATGTC
51000785 C
131 C
* * *
51000786 TATGAATCTTTTTAAATTCATTTTTAAATATTAAAATTCGAATTTCGAGGCTAA-TTCGGCTACA
1 TATGAAT-TTTTTAAATTCATTTTTAAATATTAAAATTCAAATTTCGAGGCGAAGTT-AGCTACA
* * * *
51000850 GAATCAAAGATAAAGTATAAATTTTTAAGAGGTCAAAATGAAAATTTACCATGAGATGCATAGCG
64 AAATCAAAGATAAAGTATAAATTTTTAAGAAGTCAAAATGAAAATTTACAATGAGATG--T-G-T
*
51000915 AAGTTCTTACGC
125 AA--T-GT-C-C
* * * * * * * *
51000927 TTTATGATTGTTTTTCAATTTCATTTTTAAATATTAAAACTCTAATTTTGAGTCGAAGTTCGTTA
1 --TATGAAT-TTTTT-AAATTCATTTTTAAATATTAAAATTCAAATTTCGAGGCGAAGTTAGCTA
* * * * * * *
51000992 TAGAATTAAAGATAAAGTATAATTTTTTAAGCAGTTAAAATGGAAATTTAC
62 CAAAATCAAAGATAAAGTATAAATTTTTAAGAAGTCAAAATGAAAATTTAC
51001043 CGAGTGATGC
Statistics
Matches: 206, Mismatches: 35, Indels: 18
0.80 0.14 0.07
Matches are distributed among these distances:
130 9 0.04
131 74 0.36
132 20 0.10
134 1 0.00
135 1 0.00
136 2 0.01
138 1 0.00
139 1 0.00
140 1 0.00
141 1 0.00
143 11 0.05
144 82 0.40
145 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (131 bp):
TATGAATTTTTTAAATTCATTTTTAAATATTAAAATTCAAATTTCGAGGCGAAGTTAGCTACAAA
ATCAAAGATAAAGTATAAATTTTTAAGAAGTCAAAATGAAAATTTACAATGAGATGTGTAATGTC
C
Found at i:51001436 original size:131 final size:131
Alignment explanation
Indices: 51001278--51001640 Score: 365
Period size: 139 Copynumber: 2.7 Consensus size: 131
51001268 AATCAGTTAC
* * * *
51001278 AGAATCAAAGATAAAGTATAAATTTTTAAATGGATAAAATAAAAATTTACAATCTGATGCATAGC
1 AGAATCAAATATAAAGTATAAAATTTTAAATGGATAAAATGAAAATTTACAATGTGATGCATAGC
* * *
51001343 GAAGTTCTTGTGCCTTATGATTCTTTTTAAATATTGAAACACGAATTTTG-AGCCAAAGTCCATT
66 GAAGTTCTTGTGTCTTATTATTCTTTTTAAATATTAAAACACGAATTTTGCAG-CAAAGTCCATT
51001407 A-
130 AT
* * * *
51001408 CGAATTTAAATATAAAGTATAAAATTTTAAGT-GATTAAAATGAAAATTTACCATGTGATGCATA
1 AGAA-TCAAATATAAAGTATAAAATTTTAAATGGA-TAAAATGAAAATTTACAATGTGATGCATA
* * * * *** *
51001472 ACGAACTTCTCGTGTTTTATTACTTTTTTTTCATTTTTAAATATTAAAATTTGAATTTTGCAGCG
64 GCGAAGTTCTTGTGTCTTATTA-------TTC-TTTTTAAATATTAAAACACGAATTTTGCAGCA
***
51001537 AAGTTGGTTAT
121 AAGTCCATTAT
* *
51001548 AGAATCAAATATAAAGTATAAAATTTTAAGA-GGTTAAAATGGAAATTTACAATGTGATGCATAG
1 AGAATCAAATATAAAGTATAAAATTTTAA-ATGGATAAAATGAAAATTTACAATGTGATGCATAG
*
51001612 CGAAGTTCTTGTGTCTTTTTATTCTTTTT
65 CGAAGTTCTTGTGTCTTATTATTCTTTTT
51001641 TATTTCATTT
Statistics
Matches: 186, Mismatches: 33, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
130 5 0.03
131 70 0.38
132 3 0.02
138 3 0.02
139 99 0.53
140 6 0.03
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (131 bp):
AGAATCAAATATAAAGTATAAAATTTTAAATGGATAAAATGAAAATTTACAATGTGATGCATAGC
GAAGTTCTTGTGTCTTATTATTCTTTTTAAATATTAAAACACGAATTTTGCAGCAAAGTCCATTA
T
Found at i:51001718 original size:143 final size:142
Alignment explanation
Indices: 51001366--51002174 Score: 664
Period size: 143 Copynumber: 5.7 Consensus size: 142
51001356 CTTATGATTC
* * * ** * *
51001366 TTTTTAAATATTGAAACACGAATTTTGAGCCAAAG-TCCAT-TACGAATTTAAATATAAAGTATA
1 TTTTTAAATATTAAAACTCGAATTTTGAGGCAAAGTTCGTTCTA-GAA-TCAAAGATAAAGTATA
* * * *
51001429 AAATTTTAAGTGATTAAAATGAAAATTTACCATGTGATGCATAACGAACTTCTCGTG--TTTTAT
64 AAATTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGAACTTCTCGTGTTTTTTAT
51001492 TAC-TTTTT-TTTCA
129 T-CTTTTTTATTTCA
* * * * * *
51001505 TTTTTAAATATTAAAATTTGAATTTTGCA-GCGAAGTTGGTTATAGAATCAAATATAAAGTATAA
1 TTTTTAAATATTAAAACTCGAATTTTG-AGGCAAAGTTCGTTCTAGAATCAAAGATAAAGTATAA
* * *
51001569 AATTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGCGAAGTTCTTGTGTCTTTTTAT
65 AATTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGAACTTCTCGTGT-TTTTTAT
51001634 TCTTTTTTATTTCA
129 TCTTTTTTATTTCA
* * * * *
51001648 TTTTTAAATATTGAAACTCGAATTTTGTGGCAAAGTTCGATCTAGAATTATAGATAAAGTATAAA
1 TTTTTAAATATTAAAACTCGAATTTTGAGGCAAAGTTCGTTCTAGAATCAAAGATAAAGTATAAA
* ** * ** ** * *
51001713 TTTTTATTAGGTTAAAATTGAAATTTACCATGTGATGCATAGAAAACTAAT--TGTGTTTTATGC
66 ATTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGAACTTCTCGTGTTTTTTATTC
51001776 TTTTTTGAAATCTT-A
131 TTTTTT---AT-TTCA
* * * *
51001791 TTTTTAAATTTTAAAATTCGAA-TTTGAAGGCAACA-TTGGTTAC-AGAATCAAAGACAAAGTAT
1 TTTTTAAATATTAAAACTCGAATTTTG-AGGCAA-AGTTCGTT-CTAGAATCAAAGATAAAGTAT
* * ** * * * *
51001853 AAAGTTTTAAGATGTTAAAATAAAAATTTATCATGTGATACATAGCAAACTTCTCGTGTTTTATA
63 AAAATTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGAACTTCTCGTGTTTTTTA
**
51001918 TT-TTTTAAATTTCA
128 TTCTTTTTTATTTCA
* ** * ** * * * *
51001932 TTTCTATTTATTAAAATTCGAATTTCAAGGCCAAG-TCAGTTAC-AAAATCAAATATAAAGAAT-
1 TTTTTAAATATTAAAACTCGAATTTTGAGGCAAAGTTC-GTT-CTAGAATCAAAGATAAAGTATA
* * * * *
51001994 AAATTTGTAAGAGGTTAAAATGGATATTTACAATGTGATGCATAGCGAAGTTCTCGTGTCTTATG
64 AAATTT-TAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGAACTTCTCGTGT-TTTTT
* *
51002059 ATTCCTTTTAATTTCA
127 ATTCTTTTTTATTTCA
* * * * * * *
51002075 TTTTTAAATAATCAAAACTTGAATTTTGAGGCGAAACTT-GTTATGGAATTATAGATAAAGTATA
1 TTTTTAAAT-ATTAAAACTCGAATTTTGAGGC-AAAGTTCGTTCTAGAATCAAAGATAAAGTATA
*
51002139 AAATTTTAAGAGGTTAAAATAGAAATTTACCATGTG
64 AAATTTTAAGAGGTTAAAATGGAAATTTACCATGTG
51002175 TGATGATCAC
Statistics
Matches: 528, Mismatches: 112, Indels: 55
0.76 0.16 0.08
Matches are distributed among these distances:
139 92 0.17
140 28 0.05
141 95 0.18
142 23 0.04
143 205 0.39
144 68 0.13
145 16 0.03
146 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (142 bp):
TTTTTAAATATTAAAACTCGAATTTTGAGGCAAAGTTCGTTCTAGAATCAAAGATAAAGTATAAA
ATTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGAACTTCTCGTGTTTTTTATTC
TTTTTTATTTCA
Found at i:51005084 original size:6 final size:6
Alignment explanation
Indices: 51005030--51005071 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
51005020 TAGGTCTAAG
* *
51005030 AAAATA AAAATG AACATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
51005072 CAGAAAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:51006697 original size:25 final size:25
Alignment explanation
Indices: 51006648--51006697 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
51006638 GAATAACTAA
* * **
51006648 GAATAATAATAGTCAAGATTGAAAT
1 GAATAATAATAATCAAAATAAAAAT
51006673 GAATAATAATAATCAAAATAAAAAT
1 GAATAATAATAATCAAAATAAAAAT
51006698 AAAGATAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.60, C:0.04, G:0.10, T:0.26
Consensus pattern (25 bp):
GAATAATAATAATCAAAATAAAAAT
Found at i:51006700 original size:6 final size:6
Alignment explanation
Indices: 51006677--51006749 Score: 53
Period size: 6 Copynumber: 12.2 Consensus size: 6
51006667 TGAAATGAAT
* * *
51006677 AATAAT AATCAA AATAAA AATAAA GATAAAGA AATAAA AAT-AA AAT-AA
1 AATAAA AATAAA AATAAA AATAAA AAT-AA-A AATAAA AATAAA AATAAA
* *
51006725 GAT-AA AATAAA ATAAAAA AATAAA A
1 AATAAA AATAAA A-ATAAA AATAAA A
51006750 TAGGGAAAAG
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
5 13 0.24
6 29 0.54
7 9 0.17
8 3 0.06
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:51006713 original size:20 final size:19
Alignment explanation
Indices: 51006688--51006749 Score: 78
Period size: 20 Copynumber: 3.4 Consensus size: 19
51006678 ATAATAATCA
51006688 AAATAAAAATAAAGATAAAG
1 AAATAAAAATAAA-ATAAAG
51006708 AAATAAAAATAAAAT-AAG
1 AAATAAAAATAAAATAAAG
*
51006726 --AT-AAAATAAAATAAAA
1 AAATAAAAATAAAATAAAG
51006742 AAATAAAA
1 AAATAAAA
51006750 TAGGGAAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
15 10 0.27
16 4 0.11
18 5 0.14
19 5 0.14
20 13 0.35
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (19 bp):
AAATAAAAATAAAATAAAG
Found at i:51006723 original size:5 final size:5
Alignment explanation
Indices: 51006677--51006751 Score: 59
Period size: 5 Copynumber: 14.8 Consensus size: 5
51006667 TGAAATGAAT
*
51006677 AATAA TAATCAA AATAAA AATAA AGAT-A AA-GA AATAAA AATAA AATAA
1 AATAA -AAT-AA AAT-AA AATAA A-ATAA AATAA AAT-AA AATAA AATAA
*
51006725 GATAA AATAA AAT-A AA-AA AATAA AATA
1 AATAA AATAA AATAA AATAA AATAA AATA
51006752 GGGAAAAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
4 10 0.17
5 29 0.50
6 17 0.29
7 2 0.03
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:51009024 original size:6 final size:6
Alignment explanation
Indices: 51009006--51009099 Score: 50
Period size: 6 Copynumber: 15.3 Consensus size: 6
51008996 AAGAAACATT
* * * *
51009006 ATCAGA A-CTAGA ATCAGA ATCAAA ATCAAA ATCAG- GTGACAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
51009055 ATCAGA ATCAAA ATCAGT ATCAGGTA AT-AGG ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
51009100 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 6 0.09
8 3 0.05
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:51009058 original size:37 final size:37
Alignment explanation
Indices: 51009017--51009099 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
51009007 TCAGAACTAG
*
51009017 AATCAGAATCAAAATCAAAATCAGGTGACAGAATCAA
1 AATCAGAATCAAAATCAAAATCAGGTAACAGAATCAA
** * *
51009054 AATCAGAATCAAAATCAGTATCAGGTAATAGGATCAA
1 AATCAGAATCAAAATCAAAATCAGGTAACAGAATCAA
51009091 AATCAGAAT
1 AATCAGAAT
51009100 GTGAATGCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.19
Consensus pattern (37 bp):
AATCAGAATCAAAATCAAAATCAGGTAACAGAATCAA
Found at i:51009274 original size:27 final size:26
Alignment explanation
Indices: 51009218--51009336 Score: 148
Period size: 27 Copynumber: 4.5 Consensus size: 26
51009208 AGCATGGCTG
*
51009218 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
51009244 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGACAGAGCCA
*
51009271 CCAGAACAGATATATGTAACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
51009298 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
*
51009325 CCAGGACAGATA
1 CCAGAACAGATA
51009337 TATATATGTG
Statistics
Matches: 80, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 15 0.19
27 63 0.79
28 2 0.03
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:51009308 original size:54 final size:54
Alignment explanation
Indices: 51009218--51009339 Score: 183
Period size: 54 Copynumber: 2.3 Consensus size: 54
51009208 AGCATGGCTG
* *
51009218 CCAGAACAGATA-ATGTGACAGAGTCACCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTAACAGAGCCACCAGAACAGATAATCGTGGCAGAGCCA
* * *
51009271 CCAGAACAGATATATGTAACAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTAACAGAGCCACCAGAACAGATAATCGTGGCAGAGCCA
*
51009325 CCAGGACAGATATAT
1 CCAGAACAGATATAT
51009340 ATATGTGGCG
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 12 0.19
54 50 0.81
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTAACAGAGCCACCAGAACAGATAATCGTGGCAGAGCCA
Found at i:51027196 original size:21 final size:22
Alignment explanation
Indices: 51027156--51027197 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
51027146 ATGTATGTTT
51027156 AATTTTTTTACTTCTTTCTTGAA
1 AATTTTTTTACTTC-TTCTTGAA
51027179 AATTTTTTTACTTC-TCTTG
1 AATTTTTTTACTTCTTCTTG
51027198 TTTCTTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 5 0.26
23 14 0.74
ACGTcount: A:0.19, C:0.14, G:0.05, T:0.62
Consensus pattern (22 bp):
AATTTTTTTACTTCTTCTTGAA
Found at i:51029520 original size:32 final size:32
Alignment explanation
Indices: 51029479--51029541 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
51029469 GATCGCATGG
51029479 TTGGGGACAATGCATTGTCCTAAACTATGTTT
1 TTGGGGACAATGCATTGTCCTAAACTATGTTT
51029511 TTGGGGACAATGCATTGTCCTAAACTATGTT
1 TTGGGGACAATGCATTGTCCTAAACTATGTT
51029542 AAGGATACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (32 bp):
TTGGGGACAATGCATTGTCCTAAACTATGTTT
Found at i:51031595 original size:17 final size:18
Alignment explanation
Indices: 51031560--51031596 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
51031550 TTGATATGAT
51031560 ACTAAAATTATTAAAAAA
1 ACTAAAATTATTAAAAAA
51031578 ACTAAAA-TATATAAAAAA
1 ACTAAAATTAT-TAAAAAA
51031596 A
1 A
51031597 ATCAGGGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.24
Consensus pattern (18 bp):
ACTAAAATTATTAAAAAA
Found at i:51031596 original size:19 final size:18
Alignment explanation
Indices: 51031560--51031597 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
51031550 TTGATATGAT
*
51031560 ACTAAAATTATTAAAAAA
1 ACTAAAATTATAAAAAAA
51031578 ACTAAAATATATAAAAAAA
1 ACTAAAAT-TATAAAAAAA
51031597 A
1 A
51031598 TCAGGGGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (18 bp):
ACTAAAATTATAAAAAAA
Found at i:51031923 original size:19 final size:19
Alignment explanation
Indices: 51031888--51031924 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
51031878 AATCATATCT
**
51031888 TCTAAGATTGCCTATCATA
1 TCTAAGATTGCAGATCATA
51031907 TCTAAGATTGCAGATCAT
1 TCTAAGATTGCAGATCAT
51031925 TGAAGATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCAGATCATA
Found at i:51032080 original size:21 final size:21
Alignment explanation
Indices: 51032042--51032081 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51032032 TTGGACTTCG
*
51032042 TTTTTTTTTGGAGTTTATTAT
1 TTTTTTTTTGGAGCTTATTAT
51032063 TTTTGTTTTTGGA-CTTATT
1 TTTT-TTTTTGGAGCTTATT
51032082 TCTGGGCCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.12, C:0.03, G:0.15, T:0.70
Consensus pattern (21 bp):
TTTTTTTTTGGAGCTTATTAT
Found at i:51032691 original size:78 final size:78
Alignment explanation
Indices: 51032398--51032671 Score: 397
Period size: 78 Copynumber: 3.5 Consensus size: 78
51032388 ATGTAAACAC
* * * *
51032398 ATGAAGGTCAGATTTGCTATGTCTTCGATGTGCTCCCCGTCTAATAAAGAGATACCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
51032463 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
51032476 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
51032540 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
51032554 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTTCCCGTCTAATACAAAGATGCCAAATCATCC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
51032619 TGGATCTACTTCA
66 TGGATCTGCTTCA
* * * *
51032632 ATGAAGGTCAGATATGCTATGTCTTTGATCTCCTCTCCGT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGT
51032672 TGAATATGGA
Statistics
Matches: 175, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
77 2 0.01
78 171 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:51042928 original size:18 final size:18
Alignment explanation
Indices: 51042905--51042940 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
51042895 GATATGATAC
51042905 TAAAAT-TATTAAAAAAAT
1 TAAAATATA-TAAAAAAAT
51042923 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
51042941 CAGGAAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:51043254 original size:19 final size:19
Alignment explanation
Indices: 51043230--51043266 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
51043220 AATCATATCT
51043230 TCTAAGATTGCCTATCATA
1 TCTAAGATTGCCTATCATA
*
51043249 TCTAAGATTGCTTATCAT
1 TCTAAGATTGCCTATCAT
51043267 TGAAGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGCCTATCATA
Found at i:51043274 original size:17 final size:19
Alignment explanation
Indices: 51043233--51043274 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
51043223 CATATCTTCT
*
51043233 AAGATTGCCTATCATATCT
1 AAGATTGCCTATCATATCG
*
51043252 AAGATTGCTTATCAT-T-G
1 AAGATTGCCTATCATATCG
51043269 AAGATT
1 AAGATT
51043275 ATATTTCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 1 0.05
19 14 0.67
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (19 bp):
AAGATTGCCTATCATATCG
Found at i:51043422 original size:20 final size:20
Alignment explanation
Indices: 51043384--51043423 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
51043374 CTTGGACTTC
* **
51043384 ATTTTTTTTTTGGGTTTATT
1 ATTTTTGTTTTGGACTTATT
51043404 ATTTTTGTTTTGGACTTATT
1 ATTTTTGTTTTGGACTTATT
51043424 TCTGGGCCTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.15, T:0.70
Consensus pattern (20 bp):
ATTTTTGTTTTGGACTTATT
Found at i:51047372 original size:40 final size:40
Alignment explanation
Indices: 51047279--51047535 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
51047269 TGGATGATAA
* * *
51047279 CCGGGCTAAGTCCCGAAGGCA-TTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
51047318 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
51047358 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
51047398 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51047438 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
51047478 CCGGGCTATGTCCCGAAGACATTCGAGCGAG-TAGCTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
51047517 CCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51047536 TACTTGGCTT
Statistics
Matches: 202, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 38 0.19
40 164 0.81
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51055501 original size:40 final size:40
Alignment explanation
Indices: 51055303--51055485 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
51055293 TGGATGATAA
* * *
51055303 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
51055343 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
51055383 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51055423 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51055463 TCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
51055486 CGAGAGAGTA
Statistics
Matches: 134, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.01
40 133 0.99
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51055501 original size:80 final size:79
Alignment explanation
Indices: 51055303--51055520 Score: 258
Period size: 80 Copynumber: 2.7 Consensus size: 79
51055293 TGGATGATAA
* * ** * * * *
51055303 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGAGAGAGTTACTA-TACCCGGCTAAGTCCCGAAGGCATTGG
51055368 TGCGAGTTACTATAT
65 TGCGAGTTACTATAT
* * * *
51055383 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAGAGAGTTACTATA-CCCGGCTAAGTCCCGAAGGCATTGG
51055448 TGCGAGTTACTATAT
65 TGCGAGTTACTATAT
* * * *
51055463 TCGGGCTATGTCCCGAAGGCATTCGAGAGAG-TAGCTATACCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAGAGAGTTA-CTATACCCGGCTAAGTCCCGAAGG
51055521 TACTTGGCTT
Statistics
Matches: 122, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
79 19 0.16
80 103 0.84
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAGAGAGTTACTATACCCGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTATAT
Found at i:51058871 original size:22 final size:21
Alignment explanation
Indices: 51058827--51058867 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51058817 GAAGAAGGAG
* * *
51058827 AAAAATAAGAAACGAACAATA
1 AAAAAAAAGAAAAGAAAAATA
51058848 AAAAAAAAGAAAAGAAAAAT
1 AAAAAAAAGAAAAGAAAAAT
51058868 TAAATTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.78, C:0.05, G:0.10, T:0.07
Consensus pattern (21 bp):
AAAAAAAAGAAAAGAAAAATA
Found at i:51059155 original size:17 final size:17
Alignment explanation
Indices: 51059133--51059168 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
51059123 TTAGATTATC
51059133 TATGCATTTTTAAGAAA
1 TATGCATTTTTAAGAAA
*
51059150 TATGCATTTTTAATAAA
1 TATGCATTTTTAAGAAA
51059167 TA
1 TA
51059169 AAAGAGGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (17 bp):
TATGCATTTTTAAGAAA
Found at i:51075230 original size:52 final size:52
Alignment explanation
Indices: 51075152--51075253 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
51075142 CCTAGCATGG
*
51075152 AGAATGAGCAAATAAATTATATGGGTAATAATCCT-AGACCTCAAAATAATGA
1 AGAATGAGAAAATAAATTATATGGGTAATAAT-CTGAGACCTCAAAATAATGA
51075204 AGAATGAGAAAATAAATTATATGGGTAATAATCTGAGACCTCAAAATAAT
1 AGAATGAGAAAATAAATTATATGGGTAATAATCTGAGACCTCAAAATAAT
51075254 CTTTACAGTA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 2 0.04
52 46 0.96
ACGTcount: A:0.49, C:0.10, G:0.16, T:0.25
Consensus pattern (52 bp):
AGAATGAGAAAATAAATTATATGGGTAATAATCTGAGACCTCAAAATAATGA
Found at i:51080706 original size:12 final size:12
Alignment explanation
Indices: 51080689--51080713 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51080679 ATGTAAGTGA
51080689 TCTTGATGATTT
1 TCTTGATGATTT
51080701 TCTTGATGATTT
1 TCTTGATGATTT
51080713 T
1 T
51080714 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:51081603 original size:94 final size:93
Alignment explanation
Indices: 51081410--51081584 Score: 237
Period size: 92 Copynumber: 1.9 Consensus size: 93
51081400 ACTTGTGTGA
*
51081410 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TACGAGAGCTAGTGTAAGACCATGTC
*
51081475 TGGGACATAGCATCAGCATTGAGACGAGT
65 TGGGACATAGCATCAACATTGAGACGAGT
* * * * * *
51081504 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCTA-A-ACGTTGTGTTTGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATACG-AGAGCTAGTGTAAGACCATGTC
*
51081567 TGGGACATGGCATCAACA
65 TGGGACATAGCATCAACA
51081585 CAGATGTGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
91 2 0.03
92 34 0.48
93 1 0.01
94 34 0.48
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATACGAGAGCTAGTGTAAGACCATGTCT
GGGACATAGCATCAACATTGAGACGAGT
Found at i:51081658 original size:142 final size:140
Alignment explanation
Indices: 51081414--51081682 Score: 318
Period size: 142 Copynumber: 1.9 Consensus size: 140
51081404 GTGTGAGCTA
** *
51081414 GTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTGGG
1 GTGTAAGACATGTCTGGGACATGCATCAACCACATTATGAGAGCTAGTATAAGACCATGTCTGGG
* *
51081479 ACATAGCATCAGCATTGAGACGAGTGCTAGTGTAAGA-CATGTCTAG-GACAT-GCATCGGCTAA
66 ACATAGCATCAGCATCGAGACGAGTGCCAGTGTAAGACCATGTCT-GCGACATGGCATCGGCTAA
51081541 ACGTTGTGTTT
130 ACGTTGTGTTT
* * *
51081552 GTGTAAGACCATGTCTGGGACATGGCATCAACACAGATGTGAT-AGATCTAGTATAAGATCATGT
1 GTGTAAGA-CATGTCTGGGACAT-GCATCAAC-CACAT-T-ATGAGAGCTAGTATAAGACCATGT
* *
51081616 CTGGGACATAGCATC-GACCTCGATGATG-GTAGCCA-TGTAAGACCATGTCTGCGACATGGCAT
61 CTGGGACATAGCATCAG-CATCGA-GACGAGT-GCCAGTGTAAGACCATGTCTGCGACATGGCAT
51081678 CGGCT
123 CGGCT
51081683 TCTTATCCCA
Statistics
Matches: 110, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
138 8 0.07
139 14 0.13
140 6 0.05
141 5 0.05
142 48 0.44
143 20 0.18
144 9 0.08
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (140 bp):
GTGTAAGACATGTCTGGGACATGCATCAACCACATTATGAGAGCTAGTATAAGACCATGTCTGGG
ACATAGCATCAGCATCGAGACGAGTGCCAGTGTAAGACCATGTCTGCGACATGGCATCGGCTAAA
CGTTGTGTTT
Found at i:51081678 original size:48 final size:49
Alignment explanation
Indices: 51081552--51081679 Score: 136
Period size: 50 Copynumber: 2.6 Consensus size: 49
51081542 CGTTGTGTTT
* *
51081552 GTGTAAGACCATGTCTGGGACATGGCATCAACACAGATGTGATAGATCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACACAGATGTGATAGA-CCA
* * * * *
51081602 GTATAAGATCATGTCTGGGACATAGCATCGAC-CTCGATGATGGTAG-CCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACAC-AGATG-TGATAGACCA
*
51081651 -TGTAAGACCATGTCTGCGACATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
51081680 GCTTCTTATC
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
48 25 0.38
49 3 0.05
50 32 0.49
51 5 0.08
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACACAGATGTGATAGACCA
Found at i:51088287 original size:12 final size:12
Alignment explanation
Indices: 51088270--51088294 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51088260 ATGTAAGTGA
51088270 TCTTGATGATTT
1 TCTTGATGATTT
51088282 TCTTGATGATTT
1 TCTTGATGATTT
51088294 T
1 T
51088295 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:51089166 original size:46 final size:46
Alignment explanation
Indices: 51089045--51089265 Score: 189
Period size: 49 Copynumber: 4.7 Consensus size: 46
51089035 TATGAGAGCC
* *
51089045 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTGAAACGAGTGCT
* * * *
51089093 AGTGTAAGA-CGTGTTTGGGACAT-GCATCGACT-AAACGTTGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTGAAACG-AGTGCT
* * *
51089137 TGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATAAGCGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCG--ACTGA-AA-CGAGTGCT
* * * * *
51089187 AGTATAAGACTATGTCTGGGACATGGCATCGGCCT-CAATGAAGATAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTGAAACG-AG-T-GCT
51089236 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
51089266 AGCATCTTAT
Statistics
Matches: 138, Mismatches: 23, Indels: 23
0.75 0.12 0.12
Matches are distributed among these distances:
43 4 0.03
44 14 0.10
45 13 0.09
46 12 0.09
47 16 0.12
48 11 0.08
49 33 0.24
50 32 0.23
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTGAAACGAGTGCT
Found at i:51089259 original size:99 final size:92
Alignment explanation
Indices: 51089045--51089265 Score: 244
Period size: 92 Copynumber: 2.3 Consensus size: 92
51089035 TATGAGAGCC
* ** * * * * *
51089045 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACGTGTTTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACAGAAACGAGAGCTAGTATAAGACATGTCTG
** *
51089110 GGACATGCATCGACTAAACGTTGTGTT
66 GGACATGCATCGACTAAACGAAGTGCT
*
51089137 TGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATAAGCGAGAGCTAGTATAAGACTATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACAGA-AA-CGAGAGCTAGTATAAGAC-ATGT
* * *
51089202 CTGGGACATGGCATCGGCCTCAATGAAGATAGCT
63 CTGGGACAT-GCATC-GACTAAACGAAG-T-GCT
51089236 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
51089266 AGCATCTTAT
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
92 34 0.32
93 1 0.01
94 16 0.15
95 11 0.10
96 5 0.05
97 7 0.07
98 1 0.01
99 31 0.29
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (92 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACACAGAAACGAGAGCTAGTATAAGACATGTCTG
GGACATGCATCGACTAAACGAAGTGCT
Found at i:51100809 original size:215 final size:214
Alignment explanation
Indices: 51100437--51100865 Score: 723
Period size: 215 Copynumber: 2.0 Consensus size: 214
51100427 ATATTGTGGT
*
51100437 AAGCGTAATCCAGTAGAGTTTTTGTTAAAATTGGGAATTGGGGTAGAGGAATATGTTAGTAACAT
1 AAGCGTAATCCAGTAGAGTTTTTGTTAAAATTGGGAATTAGGGTAGAGGAATATGTTAGTAACAT
* * *
51100502 TTTCGTAATAGATTTGCAAGATATATGTTGGGAATTTAAGGAGACGCATTATCTAGAATTATGTT
66 TTCCGTAATAGATTTGAAAGATATATGTTGGAAATTTAAGGAGACGCATTATCTAGAATTATGTT
* *
51100567 GGAATAAGAGTTGCGCAACGGAAGCTTGGTGGCCCGATTTGAAGGAAAATAAGTAACAGATTTTG
131 GGAATAAGAGTTACGCAACGAAAGCTTGGTGGCCCGATTTGAAGGAAAATAAGTAACAGATTTTG
51100632 TGACTAAGAAAATTTTGAG
196 TGACTAAGAAAATTTTGAG
* *
51100651 AAGCGTAATCCAGTAGAGTTTTTGTTAAAATTGGGAATTAGGGTAGAGGAATCTGTTAGTAACGT
1 AAGCGTAATCCAGTAGAGTTTTTGTTAAAATTGGGAATTAGGGTAGAGGAATATGTTAGTAACAT
* *
51100716 TTCCGTAATTAGATTTGAAATATATATGTTGGAAATTTAAGGAGACGCATTATCTAGAATTGTGT
66 TTCCGTAA-TAGATTTGAAAGATATATGTTGGAAATTTAAGGAGACGCATTATCTAGAATTATGT
* * * *
51100781 TGGAATAAGAGTTACGCAGCGAAAGCTTGGTGGCCCGGTTTGAAGGAAAATGAGTAATAGATTTT
130 TGGAATAAGAGTTACGCAACGAAAGCTTGGTGGCCCGATTTGAAGGAAAATAAGTAACAGATTTT
51100846 GTGACTAAGAAAATTTTGAG
195 GTGACTAAGAAAATTTTGAG
51100866 GACGAAATTT
Statistics
Matches: 200, Mismatches: 14, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
214 69 0.34
215 131 0.65
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (214 bp):
AAGCGTAATCCAGTAGAGTTTTTGTTAAAATTGGGAATTAGGGTAGAGGAATATGTTAGTAACAT
TTCCGTAATAGATTTGAAAGATATATGTTGGAAATTTAAGGAGACGCATTATCTAGAATTATGTT
GGAATAAGAGTTACGCAACGAAAGCTTGGTGGCCCGATTTGAAGGAAAATAAGTAACAGATTTTG
TGACTAAGAAAATTTTGAG
Found at i:51101675 original size:143 final size:142
Alignment explanation
Indices: 51101397--51108460 Score: 6222
Period size: 143 Copynumber: 49.8 Consensus size: 142
51101387 CCATTTTCTA
* * * *
51101397 TAATTTCATTTTTTAAATATTAAAATTCAAATTTCGAGG-CAACGT-TGATTATAGAATCAAAGA
1 TAATTTCA-TTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAG-TTACAGAATCAAAGA
* *
51101460 TAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTATCATGTGATGCATAGCAAAGTTCTCGT
63 TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGT
51101525 GTTTTATGATTTTTT
128 GTTTTATGATTTTTT
* * * * * *
51101540 ATAATTTCATTTTTAAATATTAAAATTCAAATTTTGAGGCCAAGTTAGTTATAGAGTTAGAGATA
1 -TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATA
* * * * *
51101605 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATGGCAAAGTTCCCATCT
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
*
51101670 GTTATGATTGTTTT
130 TTTATGATT-TTTT
* * * * * * *
51101684 CAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGCCCGTTACAGAATTAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * * * * * ** * *
51101749 AATATAATTTTTTAAGAGGTTAATATGGAAATATACAATGTGATGCATAGAAAACTAATTGTGTG
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
** *
51101814 TTCCGCTTTTTT
131 TTATGATTTTTT
* * * * * *
51101826 AAATTTTATTTTTAAATATTAAAATAT-GAAATTCGAGG-CAACGTCGGTTACAAAATCAAAGAT
1 TAATTTCATTTTTAAATATTAAAAT-TCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGAT
* * * * * * * *
51101889 AGAGTATAAATTTTTAAGAGGTTAAGATGGAGATTTATCATGTGATGCATAGAAAACTTGTGGTG
64 AAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTG
51101954 TTTTATGATTTTTTT
129 TTTTATGA-TTTTTT
** * * * *
51101969 TAATTTCATTTTTTGATATTAAAATTCGAATGTAGAGGCAAAGTCAGTTACATAATCAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * * *
51102034 AGTATAAATTTTTAAGAGATTAAAATGGAAATTTACAATGTGATACATAGCGAAGTTCTCGTGTC
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
51102099 TTATGATTGTTTT
131 TTATGATT-TTTT
* * * ** * *
51102112 TAGTAT-ATTTTTAAATACTGAAACA-T-GAATTTTGAGGTGAATTTC-GTTAC-GCAATTAAAG
1 TAATTTCATTTTTAAATA-TTAAA-ATTCGAATTTTGAGGCCAA-GTCAGTTACAG-AATCAAAG
* * * * * *
51102172 ATAAAATATAAATTTTTAAGTGGTTAAAATAGAAATTCACCTTGTGATGCAT---AAACTTCTCG
62 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCG
51102234 TGTTTTATGATTTTTT
127 TGTTTTATGATTTTTT
*** * * ** * * *
51102250 ATAATTTCATTTTTAAATATTAAAATTC-AACTTCCAAGG-TAACATTGGTTTCAAAATTAAAGA
1 -TAATTTCATTTTTAAATATTAAAATTCGAA-TTTTGAGGCCAA-GTCAGTTACAGAATCAAAGA
* ** * *
51102313 TAAAGTATAAA-TTTTAAGAGGTTAAAAAGGAAATTTATAATGTGATGCATAGAAAACTTCTCGT
63 TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGT
*
51102377 ATTTTATGATTTTTT
128 GTTTTATGATTTTTT
* * *
51102392 TAATTTCATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTACAGAATCGAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * * * *
51102457 AGTATAAATTTTTAATAGATTAAAGTGGATATTTACCATGTGATGCTTAGCAAAGTTCTCGTGTC
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
51102522 TTATGATTCTTTT
131 TTATGATT-TTTT
* * * * * * * * *
51102535 GAATTTCATTTTTAAATATTGAAACTCGAATATTGAGTCGAAGTTCA-TTACGGAATTATAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAG-TCAGTTACAGAATCAAAGATA
* * * * * * **
51102599 AGAATATAAAATTTTAAGA---TAAAATGGAAA-GTACCAGGTGATGCATAGAAAACTAATCGTG
65 A-AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTG
**
51102660 TTTTGCATTTTTTTTT
129 TTTT--ATGATTTTTT
* * * * * * * *
51102676 TAATTTTACTTTTAAATATTAAAATTTGAGTTTCGAGG-CAACATCAGTTACAGAATAAAAGTTA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGATA
** ** * *
51102740 AAGTATAAATTTTTAAGAGGTTATGATGGAAATTTATTATGTGATGCATAGCAAACTTTTCGTGT
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
51102805 TTTATGATTTTTT
130 TTTATGATTTTTT
* * * ** * * * *
51102818 AAATTTTATTTTTAAATATTAAAATTTGAATTTCAAGGCAAAGTCGGATACTGAATCAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * *
51102883 AGTATACATTTTTAAGAGGTTAAAATGGAAATTTACAATATGATGCATAGCGAAA-TTCTCATGT
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC-AAAGTTCTCGTGT
*
51102947 CTTATGATTGTTTT
130 TTTATGATT-TTTT
* * * ** *** *
51102961 TAATTT-ATTTTTAAATATTGAAACTCAAATTTTGAGGTGAAGTCTA-TTGTGGAATTAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTC-AGTTACAGAATCAAAGATA
* * * * * *
51103024 TAGTGTAAATTTCTAA-ATGGTTAAAATGGAAATTTTCAATGTGATGCATAGCGAAA-TTCTTGT
65 AAGTATAAATTTTTAAGA-GGTTAAAATGGAAATTTACCATGTGATGCATAGC-AAAGTTCTCGT
* *
51103087 GTCTTATGATTCTCTT
128 GTTTTATGATT-TTTT
* * ** * * * *
51103103 TAATTTCATTTTTAAATATTAAAACTCAAATTTCAAGGCGAAGTCGGCTACAGAATTAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
*
51103168 AGTATAAATTTTTAAGAGGTTAAAATTGGAAATTTACCATATGATGCATAGCAAAGTTCTCGTGT
66 AGTATAAATTTTTAAGAGGTTAAAA-TGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
*
51103233 TTTATGAGTTTTT
130 TTTATGATTTTTT
* * * * *
51103246 TAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGACCAAGT-TGATTATAGAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAG-TTACAGAATCAAAGATA
* * * * * *
51103310 AAGTATAAATTTGTGAA-AGGCTAAAATGGAAATTTACAATGCGATGCGTAGCGAAGTTCTCGTG
65 AAGTATAAATTT-TTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTG
*
51103374 TCTTATGATTCTTTT
129 TTTTATGATT-TTTT
* * * * *
51103389 TAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGG-TAAGTCCGTTACAGAATCAAAGAAAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
** * * * * *
51103453 AGTATACTTTTTTGATAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAATTCTCATATT
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
51103518 TTATGATTTTTT
131 TTATGATTTTTT
* * * * * * *
51103530 TAAACTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCGAGGTCAGTTATAAAATCAAAGATA
1 T-AATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATA
* * * *
51103595 AAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGTATAGCGAAGTTCTCGTAT
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
*
51103660 CTTATGATTCTTTT
130 TTTATGATT-TTTT
* * ** * * * *
51103674 TAATTTCATTTTTAAATATTGAAACTCGAATTTTGAATCGAAGTCCGTTACGGAATTATAA-ATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCA-AAGATA
* * * * * * ** *
51103738 AAGTACAAACTTTTAAGAGGCTAAAATGGAAATTTACCAT-TGATGCACAGAAAACTAATTGTGT
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
** *
51103802 TTTGCGCTTTTTT
130 TTTATGATTTTTT
* * * * *
51103815 T-ATTTTATTTTTAAATATTAAAATTCAAATTTCGAGG-CAACGTCGGTTACAGAATAAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGATA
* * *
51103878 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGCAAACTTCTAGTGT
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
*
51103943 TGTATGATTTTTTT
130 TTTATGA-TTTTTT
* * * * *
51103957 TAATTCCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAAGTCGGTTACAAAATCAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * * * *
51104022 AGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATTCATAGCAAAATTCTTGTGTC
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
51104087 TTATGATTTTTT
131 TTATGATTTTTT
* * * * * * *
51104099 AAATTT-ATTTTTAAATATTAAAACTCGAATTTTGAGGCGAACTCCGTTACGGAATTAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * * * *
51104163 AGTATAATTTTTTAAGTGGTTAAAATAGAAATTTACCTTGT-ATTGCATAG-AGAACTTCTCTTG
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGA-TGCATAGCA-AAGTTCTCGTG
*
51104226 TTTTATGAATTTTTA
129 TTTTATG-ATTTTTT
** ** * **
51104241 TAATTTCATTTTTAAATATTAAAATTAAAATTTCAAGG-CAACGTCGGTTACAGAATCAATTATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGATA
* * ** *
51104305 ATGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTATGA
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
51104370 TTTATGATTTTTT
130 TTTATGATTTTTT
* * * * **
51104383 TAAATTTCATTTTAAAATGTTAAAATTCG-ATTTTCTAGGCAAAGTTGGTTACAGAATCAAAGAT
1 T-AATTTCATTTTTAAATATTAAAATTCGAATTTT-GAGGCCAAGTCAGTTACAGAATCAAAGAT
* * * * * * **
51104447 ACAGTATAAATTTTTCAGAGATTAAGATGGAAATTTACAATGTGATGCATAGCGAAGTTCTTATG
64 AAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTG
* *
51104512 TCTTATGAATCTTTT
129 TTTTATG-ATTTTTT
* * * ** * *
51104527 TAATTACATTTTTAAATATTGAAACTCGAATTTTGAGG-CAACGTTC-GTTATGGAATTATAGAT
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-G-TCAGTTACAGAATCAAAGAT
* * * *
51104590 AAAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTG
64 AAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTG
*
51104655 TTTTATGCTCTCTTTTTT
129 TTTTATG----ATTTTTT
* * * * * *
51104673 TAATTTCATTTTTCAATATTAAAATTTGAATTTT-AAGTCAACATCAATTACAGAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGATA
* * * *
51104737 AAGTATAAATTTTAAAGAGGGTAAAATGGAAATTTATCATGTGATGCATAGC-AAGCTTCTTGTG
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAG-TTCTCGTG
* * *
51104801 TTATATGA-TATTC
129 TTTTATGATTTTTT
* * * ** ** * * *
51104814 TAATTTGATTTTTAAATATTGAAATTCGAATTTCGACACCAAGTCTCTTAAAGAATCAAAGTTAG
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * *
51104879 TGTATAAATTTTTAAGAGGTTAAAATGGAAACTTA-CA----ATG--T------GTTCTCGTGTC
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
51104931 TTATGATTGTTTT
131 TTATGATT-TTTT
* * * * * * * * * *
51104944 AAATTT-A-TTTTAAGATTTTGAAACTCGAATTTTTAGGCGAA--C-TTTACAAAATTAAAGTTA
1 TAATTTCATTTTTAA-ATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATA
* **
51105004 AAGTATAAATTTTTAGTTGGTTTTTAGTTGGTTAAAATGGAAATTTACCATGTGATGCATATAAA
65 AAGTATAAATTTTTA----------AG-AGGTTAAAATGGAAATTTACCATGTGATGCATAGCAA
* *
51105069 ACTTCTTGTGTTTTATGATTTTTTT
119 AGTTCTCGTGTTTTATGA-TTTTTT
** * * *
51105094 GTAATTTCATTTTTAAATATTAAAATTTTAATTTCGAGG-CAACGTCAATTAAAGAAT-AAGAGA
1 -TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAA-AGA
* * * *
51105157 TAAAGTTTGAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATACATAGCAAAGTTCTCGT
63 TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGT
51105222 GTTTTATGA-TTTTT
128 GTTTTATGATTTTTT
* * ** * * *
51105236 TAATTTTATTTTTAAATATTAAAATTTGAATTTCAAGGCAAAGTCAATTAGAGAATCAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * ** * * * *
51105301 AGTATAAACTTTTAAGAGGCTAAAATGAAAATTTATAATGTGATTCATAGCGAAGTTCTCGTATC
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
51105366 TTATGATTGTTTT
131 TTATGATT-TTTT
* * * * *
51105379 TAATTT-A-TTTTAAGATTTTGAAACTT-GAATTTTGAGGCAAACTCTA-TTACAGAATTAAAGA
1 TAATTTCATTTTTAA-ATATT-AAAATTCGAATTTTGAGGCCAAGTC-AGTTACAGAATCAAAGA
* * *
51105440 TAAAGTATAAATTTTTAAGTGGTTAAAATAGAAATTTACCATATGATGCATAGCAAAGTT-TCGT
63 TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGT
*
51105504 GTTTTATGAGTTTTT
128 GTTTTATGATTTTTT
* * * * *
51105519 TAATTTTATTTTTAAATATTAAAATTTGGATTTCGAGGCCAAGTC-GATTATAGAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAG-TTACAGAATCAAAGATA
* * * * * *
51105583 AAGTATAAATTTGTAAGAGGTTAAAATGGATATTTACGATGCGATG--T-GCAATGTTCTCATGT
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
*
51105645 CTTATGATTCTTTT
130 TTTATGATT-TTTT
* * * * *
51105659 TAATTTCATTTTTAAATATT-AAATTAAGAAATTCGAGGCAAAGTC-GATTATAGAATCAAAGAT
1 TAATTTCATTTTTAAATATTAAAATT-CGAATTTTGAGGCCAAGTCAG-TTACAGAATCAAAGAT
* * * *
51105722 AAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCATGGCGAAGTTCTTGTG
64 AAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTG
*
51105787 TCTTATGATTCTTTT
129 TTTTATGATT-TTTT
* * ** * * * *
51105802 TAATTTCATTTTTAAGTATTGAAGCTCCAA-TTTGAGTCGAAGTCCGTT-----AT--AA-ATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * * *
51105858 AGTATAAACTTTTAAGAGGTT---A---AAA--TA--GTGTGATGCATAGAAAACTAT-TAGTGT
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGT-TCTCGTGT
*
51105912 TTTGTG-TTTTTT
130 TTTATGATTTTTT
* * * *
51105924 TAAATTTTAATTCTAAATATTAAAATTCG-ATTTTCGAGG-CAACATC-GATTACAGAATCAAAG
1 T-AATTTCATTTTTAAATATTAAAATTCGAATTTT-GAGGCCAA-GTCAG-TTACAGAATCAAAG
* ** *
51105986 ATAAAATATAAATTTTTAAGAGGTTAAAAAAGAAATTTACCATGTGATGCATAGCAAAGTTCTCA
62 ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCG
51106051 TGTTTTATGATATTTTT
127 TGTTTTATGAT-TTTTT
* **
51106068 TAATTTTATTTTTAAATATTAAAATTCGAATTTTGAGG-CAATGTGGGTTACAGAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGATA
* * * * * *
51106132 AAGTATAGATTTTT-AGTAGGTTAAAATGG-AATTTACCATATGATGGATACCGAAGTTCTTGTG
65 AAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTG
*
51106195 TCTTATGATTCTTTT
129 TTTTATGATT-TTTT
** * * * * * * * **
51106210 GGATTTCATTTTTAAATATTGAAACTCGAAATTTGAGTCGAAGTCCA-TTTC-GCAATTATGGAT
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGT-CAGTTACAG-AATCAAAGAT
* * * *
51106273 AGAGTATAAACTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCATAGAAAAGTAAT-TC-
64 AAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGT--TCTCG
** *
51106336 TGTTTTGCGCTTTATTT
127 TGTTTTATGATTT-TTT
* ** * * *
51106353 T-ATTTTATTTTTAAATATTAAAATTTAAATTTCGAGG-CAACGTCGGTTACAGAATAAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGATA
* * *
51106416 AAGTATAAATTTTTAAGAGTTTAAAATGGAAATTTATCATGTGATGCATAGCAAACTTCTCGTGT
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
*
51106481 TGTATGATTTTTT
130 TTTATGATTTTTT
* * * *
51106494 TAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAAGTCGGTTACAAAATCAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * *
51106559 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGCAAAATTCTCGTGTC
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
*
51106624 TTATAATTTTTT
131 TTATGATTTTTT
* * * ** * * *
51106636 AAATTT-ATTTTTAACTATTAAAACTCGAATTTTGAGGTGAACTCCGTTACAGAATTAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * * ** * ** * *
51106700 AGTATAATTTTTTAAGTGGTTAAAATGAAAATTTACAATGCAATGCGTAGTGAACTTCTCATGTT
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
51106765 TTATGATTTTTT
131 TTATGATTTTTT
* * * * * * * *
51106777 TAACTTGACTTTTAAATATTAAAATTTGAATTTTAAGGTCAAGTCAGCTACAGAATCAAATATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * *
51106842 AGTATAAATTTTTAAGAGGTTAAAACGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGTT
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
*
51106907 TTATGCTTTTCTT
131 TTATGATTTT-TT
* ** * * * *
51106920 TAATTTCATTTTTAAATATTAAAATTTGAATTTCAAAG-TAACGTCGGTTACAAAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGATA
* * * * * * * *
51106984 GAGTATAAATTTTGAAGAGGCTAAAATGGAAACTTATCATGTGATGTATAGC-AAGCTTCTCATA
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAG-TTCTCGTG
51107048 TTTTATGATTTTTT
129 TTTTATGATTTTTT
* * * * *
51107062 TAATTTGATTTTTAAATATTATAATTCGAATTTCGAGGCCAAATCAGTTAGAGAATCAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
* * * * ** * *
51107127 AGTATAAATTTTTAATAGGTTAAAATAGAAATTTACAATGTGATGCATTGTGAAGTTTTCGTGTC
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
51107192 TTATGATTATTTT
131 TTATGATT-TTTT
* * * * * * * *
51107205 TAATTT-A-TTTTAAGATTTTGAAACTCGAATTTTGAGGCAAACTCCGTTACGGAATTAAAGATA
1 TAATTTCATTTTTAA-ATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATA
* * * * * *
51107268 AAGTATACATTTTTAAGTGGTTAAAATAGAAATTTACCTTGTGATGCATAGAAAACTTCTCCTAT
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCT-C---
* *
51107333 TTTATGATTTTTTATGAATTTTTA
126 -----G-TGTTTTATG-ATTTTTT
* * ** *
51107357 TAATTTCATTTTTAAATATTAAAATTCAAATTTCGAGG-CAACGTTGGTTACAGAATCAAATATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGATA
* * *
51107421 AAGTATAAAATTTTTAAGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCGAAGTTCTCGTG
65 AAGTAT-AAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTG
*
51107486 TCTTATGATTCTTTT
129 TTTTATGATT-TTTT
* * * * * * * * * *
51107501 TAATTTTATTTTTAAATATTGAAACTCAAATTTTGAGTCGAAGTCCGTTACAAAATTATAA-AAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCA-AAGATA
* * * * * *
51107565 AAGTATCAACTTTTAAGAGATTAAAATGGAAATTTACCATGTGATGCACAGAAAACTAT-TCGTG
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGT-TCTCGTG
*
51107629 -TTT-TGCACTTTTT
129 TTTTATG-ATTTTTT
* * * * * * *
51107642 T-ATTTTATTTTTAAATATTAAAATTCAAATTTCGAGG-CAACTTCAATTACATAATAAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGATA
* * * *
51107705 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAACAAACTTCTCCTGT
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
*
51107770 TGTATGATTTTTTT
130 TTTATGA-TTTTTT
* * * *
51107784 TAAATTTCATTTTTAAATATTAAAATTTGAATTTTGAGGCTAAGTCGGTTATAGAATCAAAGATA
1 T-AATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATA
* * * *
51107849 AAGTATAAATTTTTAAGAGGCTAAAATGTAAATTTACAATGTGATTCATAGCGAAA-TTCTCGTG
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC-AAAGTTCTCGTG
51107913 TTTTATGA-TTTTT
129 TTTTATGATTTTTT
* * * *
51107926 TAATTT-ATTTTTAAA-ATTTGAAACTT-GAATTTTGAGGCAAACTCCA-TTACGGAATCAAAGA
1 TAATTTCATTTTTAAATA-TT-AAAATTCGAATTTTGAGGCCAAGT-CAGTTACAGAATCAAAGA
* * * * * * * * *
51107987 T-AA-TACAAATTTTTAAGTGGTTAAATTGGAAATTTACCTTCTAATGCATAGAAAACTTCTCTT
63 TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGT
*
51108050 GTTTTATGAATTTTTA
128 GTTTTATG-ATTTTTT
* * * * * *
51108066 TAATTTCATTTTAAAATATTAAAATTTGAATTTCGAGG-TAATGTCTGTTACA-AATCAAATATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAA-GTCAGTTACAGAATCAAAGATA
** * * * *
51108129 AAGTATAAATTTTTAAGAGGAGAAAATGGAAATTTACCATATGATGCATAGCATACTTCTCGTGA
65 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
51108194 TTTATGATTGTTTT
130 TTTATGATT-TTTT
* * * * * * *
51108208 TAGTTTCATTTTTAAATATTAAAATTTG-ATTTTCTAGGCAAAGTCGGTTGCGGAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTT-GAGGCCAAGTCAGTTACAGAATCAAAGATA
* * * * * * * *
51108272 CAGTAT-AATCTTTTAAGAGATTAAGATGAAAATTTACAATGTGTTGCATAGCGAAGTTCTAGTG
65 AAGTATAAAT-TTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTG
51108336 TCTTT-TGATTCTTTT
129 T-TTTATGATT-TTTT
* * * * *** * * * *
51108351 TAATTTCATTTTTAAATACTGAAACTCAAATTTTGAGTTGAAGTCCGTTACGGAATTATAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
*
51108416 AGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
66 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
51108461 TGTAAAGCCC
Statistics
Matches: 5616, Mismatches: 1060, Indels: 489
0.78 0.15 0.07
Matches are distributed among these distances:
122 6 0.00
123 27 0.00
124 30 0.01
125 1 0.00
126 29 0.01
127 1 0.00
128 22 0.00
129 25 0.00
130 7 0.00
131 3 0.00
132 23 0.00
134 25 0.00
135 3 0.00
136 5 0.00
137 22 0.00
138 69 0.01
139 96 0.02
140 453 0.08
141 729 0.13
142 1632 0.29
143 1706 0.30
144 379 0.07
145 19 0.00
146 112 0.02
150 18 0.00
151 10 0.00
152 35 0.01
153 51 0.01
154 54 0.01
155 24 0.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (142 bp):
TAATTTCATTTTTAAATATTAAAATTCGAATTTTGAGGCCAAGTCAGTTACAGAATCAAAGATAA
AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGTT
TTATGATTTTTT
Done.