Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 163 of 295
Found at i:51102691 original size:284 final size:279
Alignment explanation
Indices: 51101397--51108460 Score: 5458
Period size: 285 Copynumber: 24.9 Consensus size: 279
51101387 CCATTTTCTA
* * *
51101397 TAATTTCATTTTTTAAATATTAAAATTCAAATTTCGAGGCAACGTTGATTATAGAATCAAAGATA
1 TAATTTCA-TTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTTCATTACAGAATCAAAGATA
* * * *
51101462 AAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTATCATGTGATGCATAGCAAAGTTCTCGTGT
64 AAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGT
* ** ** *
51101527 TTTATGATTTTTTATAATTTCATTTTTAAATATTAAAATTCAAATTTTGAGGCCAAGTTAGTTAT
127 TTTAT--TTTTTT-TAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTAC
* * * * *
51101592 AGAGTTAGAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATGGC
189 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * * *
51101657 AAAGTTCCCATCTGTTATGATTGTTTT
254 AAACTTCTCGTGTTTTATGATT-TTTT
* * * * ** * *
51101684 CAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGCCCGTTACAGAATTAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTTCATTACAGAATCAAAGATAA
* * * * * ** *
51101749 AATATAATTTTTTAAGAGGTTAATATGGAAATATACAATGTGATGCATAGAAAACTAATTGTGTG
65 AGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGT-
*** * * * * *
51101814 TTCCGCTTTTTTAAATTTTATTTTTAAATATTAAAATATGAAATTCGAGG-CAACGTCGGTTACA
127 TT-TATTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAA-GTCCGTTACA
* * * * * *
51101878 AAATCAAAGATAGAGTATAAATTTTTAAGAGGTTAAGATGGAGATTTATCATGTGATGCATAGAA
190 GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCA
* *
51101943 AACTTGTGGTGTTTTATGATTTTTTT
255 AACTTCTCGTGTTTTATGA-TTTTTT
** * * *
51101969 TAATTTCATTTTTTGATATTAAAATTCGAATGTAGAGGCAAAG-TCAGTTACATAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTTCA-TTACAGAATCAAAGATA
* * ** *
51102033 AAGTATAAATTTTTAAGAGATTAAAATGGAAATTTACAATGTGATACATAGCGAAGTTCTCGTGT
64 AAGTATAAATTTTTAAGAG--TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGT
* * * * * ** ** * *
51102098 CTTATGATTGTTTTT-AGTATATTTTTAAATACTGAAACATGAATTTTGAGGTGAATTTCGTTAC
127 -TT-T-ATTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTAC
* * * * * *
51102162 -GCAATTAAAGATAAAATATAAATTTTTAAGTGGTTAAAATAGAAATTCACCTTGTGATGCAT--
189 AG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
51102224 -AAACTTCTCGTGTTTTATGATTTTTT
253 CAAACTTCTCGTGTTTTATGATTTTTT
* * * * ** * * *
51102250 ATAATTTCATTTTTAAATATTAAAATTC-AACTTCCAAGGTAACATTGGTTTCAAAATTAAAGAT
1 -TAATTTCATTTTTAAATATTAAAATTCGAA-TTTCGAGGCAA-GTTCATTACAGAATCAAAGAT
* ** *
51102314 AAAGTATAAA-TTTTAAGAGGTTAAAAAGGAAATTTATAATGTGATGCATAGAAAACTTCTCGTA
63 AAAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTG
*
51102378 TTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTAC
126 TTTTAT--TTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTAC
* * * * * *
51102443 AGAATCGAAGATAAAGTATAAATTTTTAATAGATTAAAGTGGATATTTACCATGTGATGCTTAGC
189 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* *
51102508 AAAGTTCTCGTGTCTTATGATTCTTTT
254 AAACTTCTCGTGTTTTATGATT-TTTT
* * * * * * *
51102535 GAATTTCATTTTTAAATATTGAAACTCGAATATT-GAGTCGAAGTTCATTACGGAATTATAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAAT-TTCGAGGC-AAGTTCATTACAGAATCAAAGATA
* * * * **
51102599 AGAATATAAAATTTTAAGA-TAAAATGGAAA-GTACCAGGTGATGCATAGAAAACTAATCGTGTT
64 A-AGTATAAATTTTTAAGAGTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGTT
* * * * *
51102662 TTGCATTTTTTTTTTAATTTTACTTTTAAATATTAAAATTTGAGTTTCGAGG-CAACATCAGTTA
128 TT--A--TTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAA-GTCCGTTA
* * ** **
51102726 CAGAATAAAAGTTAAAGTATAAATTTTTAAGAGGTTATGATGGAAATTTATTATGTGATGCATAG
188 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
*
51102791 CAAACTTTTCGTGTTTTATGATTTTTT
253 CAAACTTCTCGTGTTTTATGATTTTTT
* * * * *
51102818 AAATTTTATTTTTAAATATTAAAATTTGAATTTCAAGGCAAAG-TCGGA-TACTGAATCAAAGAT
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTTC--ATTACAGAATCAAAGAT
* * * * *
51102881 AAAGTATACATTTTTAAGAGGTTAAAATGGAAATTTACAATATGATGCATAGCGAAA-TTCTCAT
63 AAAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAG-AAAACTTCTCGT
* * * ** ** **
51102945 GTCTTATGATTGTTTTTAA-TTTATTTTTAAATATTGAAACTCAAATTTTGAGGTGAAGTCTATT
125 GT-TT-T-ATTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTT
*** * * * * * *
51103009 GTGGAATTAAAGATATAGTGTAAATTTCTAA-ATGGTTAAAATGGAAATTTTCAATGTGATGCAT
187 ACAGAATCAAAGATAAAGTATAAATTTTTAAGA-GGTTAAAATGGAAATTTACCATGTGATGCAT
* * *
51103073 AGCGAAA-TTCTTGTGTCTTATGATTCTCTT
251 AGC-AAACTTCTCGTGTTTTATGATT-TTTT
* * * ** *
51103103 TAATTTCATTTTTAAATATTAAAACTCAAATTTCAAGGCGAAG-TCGGCTACAGAATTAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTTC-ATTACAGAATCAAAGATA
* * *
51103167 AAGTATAAATTTTTAAGAGGTTAAAATTGGAAATTTACCATATGATGCATAGCAAAGTTCTCGTG
64 AAGTATAAATTTTTAAGA-G-TAAAA-TGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTG
* * * * *
51103232 TTTTATGAGTTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGACCAAGT-TGATTA
126 TTTTAT--TTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCG-TTA
* * * * * *
51103296 TAGAATCAAAGATAAAGTATAAATTTGTGAA-AGGCTAAAATGGAAATTTACAATGCGATGCGTA
188 CAGAATCAAAGATAAAGTATAAATTT-TTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
* * *
51103360 GCGAAGTTCTCGTGTCTTATGATTCTTTT
252 GCAAACTTCTCGTGTTTTATGATT-TTTT
* * * * * * *
51103389 TAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGTAAGTCCGTTACAGAATCAAAGAAAAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAGTTCATTACAGAATCAAAGATAAA
** * *
51103454 GTATACTTTTTTGATAG-GTTAAAATGGAAATTTACCATGTGATGCATAGCAAAA-TTCTCATAT
66 GTATAAATTTTT-A-AGAG-TAAAATGGAAATTTACCATGTGATGCATAG-AAAACTTCTCGTGT
* * * * * * *
51103517 TTTATGATTTTTTTAAACTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCGAGGTCAGTTAT
127 TTTAT--TTTTTTT-AATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTAC
* * *
51103582 AAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGTATAGC
189 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * *
51103647 GAAGTTCTCGTATCTTATGATTCTTTT
254 AAACTTCTCGTGTTTTATGATT-TTTT
* * * ** * * * *
51103674 TAATTTCATTTTTAAATATTGAAACTCGAATTTTGAATCGAAGTCCGTTACGGAATTATAA-ATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTTCATTACAGAATCA-AAGATA
* * * ** *
51103738 AAGTACAAACTTTTAAGAGGCTAAAATGGAAATTTACCAT-TGATGCACAGAAAACTAATTGTGT
64 AAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGT
** ** * *
51103802 TTTGCGCTTTTTTT-ATTTTATTTTTAAATATTAAAATTCAAATTTCGAGG-CAACGTCGGTTAC
127 TTT--ATTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAA-GTCCGTTAC
* *
51103865 AGAATAAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGC
189 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* *
51103930 AAACTTCTAGTGTTGTATGATTTTTTT
254 AAACTTCTCGTGTTTTATGA-TTTTTT
* * * *
51103957 TAATTCCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAAG-TCGGTTACAAAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGTTC-ATTACAGAATCAAAGATA
* * * *
51104021 AAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATTCATAGCAAAA-TTCTTGTG
64 AAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAG-AAAACTTCTCGTG
* * * * * * * *
51104085 TCTTATGATTTTTTAAATTTATTTTTAAATATTAAAACTCGAATTTTGAGGCGAACTCCGTTACG
126 TTTTAT-TTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTACA
* * * * *
51104150 GAATTAAAGATAAAGTATAATTTTTTAAGTGGTTAAAATAGAAATTTACCTTGT-ATTGCATAG-
190 GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGA-TGCATAGC
* *
51104213 AGAACTTCTCTTGTTTTATGAATTTTTA
254 A-AACTTCTCGTGTTTTATG-ATTTTTT
** * * **
51104241 TAATTTCATTTTTAAATATTAAAATTAAAATTTCAAGGCAACG-TCGGTTACAGAATCAATTATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTTC-ATTACAGAATCAAAGATA
* * **
51104305 ATGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTATGA
64 AAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTG-
* * * * * * * **
51104370 TTTATGATTTTTTTAAATTTCATTTTAAAATGTTAAAATTCG-ATTTTCTAGGCAAAGTTGGTTA
126 TTT-T-ATTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTT-GAGGCCAAGTCCGTTA
* * * * *
51104434 CAGAATCAAAGATACAGTATAAATTTTTCAGAGATTAAGATGGAAATTTACAATGTGATGCATAG
188 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
* * ** * *
51104499 CGAAGTTCTTATGTCTTATGAATCTTTT
253 CAAACTTCTCGTGTTTTATG-ATTTTTT
* * * * * ** * *
51104527 TAATTACATTTTTAAATATTGAAACTCGAATTTTGAGGCAACGTTCGTTATGGAATTATAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTTCATTACAGAATCAAAGATAA
* *
51104592 AGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGTT
65 AGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGTT
* * * * * **
51104657 TTATGCTCTCTTTTTTTAATTTCATTTTTCAATATTAAAATTTGAATTTT-AAGTCAACATCAAT
128 TTA-----T-TTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAA-GTCCGT
* * *
51104721 TACAGAATCAAAGATAAAGTATAAATTTTAAAGAGGGTAAAATGGAAATTTATCATGTGATGCAT
186 TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
* * * * *
51104786 AGCAAGCTTCTTGTGTTATATGA-TATTC
251 AGCAAACTTCTCGTGTTTTATGATTTTTT
* * ** * *
51104814 TAATTTGATTTTTAAATATTGAAATTCGAATTTCGACACCAAGTCTC-TTAAAGAATCAAAGTTA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGA-GGCAAGT-TCATTACAGAATCAAAGATA
** *
51104878 GTGTATAAATTTTTAAGAGGTTAAAATGGAAACTTA-CA----ATG--T-G-----TTCTCGTGT
64 AAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGT
* * * * * * * * * *
51104930 CTTATGATTGTTTTAAATTTA-TTTTAAGATTTTGAAACTCGAATTTTTAGGCGAA---CTTTAC
127 TTTAT--TTTTTTTAATTTTATTTTTAA-ATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTAC
* * * *
51104991 AAAATTAAAGTTAAAGTATAAATTTTTAGTTGGTTTTTAGTTGGTTAAAATGGAAATTTACCATG
189 AGAATCAAAGATAAAGTATAAATTTTTA----------AG-AGGTTAAAATGGAAATTTACCATG
** *
51105056 TGATGCATATAAAACTTCTTGTGTTTTATGATTTTTTT
243 TGATGCATAGCAAACTTCTCGTGTTTTATGA-TTTTTT
** *
51105094 GTAATTTCATTTTTAAATATTAAAATTTTAATTTCGAGGCAACG-TCAATTAAAGAAT-AAGAGA
1 -TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTTC-ATTACAGAATCAA-AGA
* * * * * *
51105157 TAAAGTTTGAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATACATAGCAAAGTTCTCGT
62 TAAAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGT
* ** * ** *
51105222 GTTTTATGATTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTCAAGGCAAAGTCAATTAG
125 GTTTTAT-TTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTAC
* * * ** *
51105287 AGAATCAAAGATAAAGTATAAACTTTTAAGAGGCTAAAATGAAAATTTATAATGTGATTCATAGC
189 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * *
51105352 GAAGTTCTCGTATCTTATGATTGTTTT
254 AAACTTCTCGTGTTTTATGATT-TTTT
* * * ** *
51105379 TAATTT-A-TTTTAAGATTTTGAAACTT-GAATTTTGAGGCAAACTCTATTACAGAATTAAAGAT
1 TAATTTCATTTTTAA-ATATT-AAAATTCGAATTTCGAGGCAAGTTC-ATTACAGAATCAAAGAT
* * * * *
51105441 AAAGTATAAATTTTTAAGTGGTTAAAATAGAAATTTACCATATGATGCATAGCAAAGTT-TCGTG
63 AAAGTATAAATTTTTAAG-AG-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTG
* * *
51105505 TTTTATGAGTTTTTTAATTTTATTTTTAAATATTAAAATTTGGATTTCGAGGCCAAGT-CGATTA
126 TTTTAT--TTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCG-TTA
* * * * *
51105569 TAGAATCAAAGATAAAGTATAAATTTGTAAGAGGTTAAAATGGATATTTACGATGCGATG--T-G
188 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
** * *
51105631 CAATGTTCTCATGTCTTATGATTCTTTT
253 CAAACTTCTCGTGTTTTATGATT-TTTT
* * *
51105659 TAATTTCATTTTTAAATATT-AAATTAAGAAATTCGAGGCAAAG-TCGATTATAGAATCAAAGAT
1 TAATTTCATTTTTAAATATTAAAATT-CGAATTTCGAGGC-AAGTTC-ATTACAGAATCAAAGAT
* * ** * *
51105722 AAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCATGGCGAAGTTCTTGTG
63 AAAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTG
* * * * ** ** * *
51105787 TCTTATGATTCTTTTTAATTTCATTTTTAAGTATTGAAGCTCCAA-TTTGAGTCGAAGTCCGTT-
126 T-TT-T-ATTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTA
* *
51105850 ----AT--AA-ATAAAGTATAAACTTTTAAGAGGTT---A---AAA--TA--GTGTGATGCATAG
188 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
* * *
51105898 AAAACTAT-TAGTGTTTTGTG-TTTTTT
253 CAAACT-TCTCGTGTTTTATGATTTTTT
* * * * **
51105924 TAAATTTTAATTCTAAATATTAAAATTCGATTTTCGAGGCAACATCGATTACAGAATCAAAGATA
1 T-AATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAGTTC-ATTACAGAATCAAAGATA
* ** * * *
51105989 AAATATAAATTTTTAAGAGGTTAAAAAAGAAATTTACCATGTGATGCATAGCAAAGTTCTCATGT
64 AAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGT
* **
51106054 TTTATGATATTTTTTAATTTTATTTTTAAATATTAAAATTCGAATTTTGAGG-CAATGTGGGTTA
127 TTTAT--T-TTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAA-GTCCGTTA
* * *
51106118 CAGAATCAAAGATAAAGTATAGATTTTT-AGTAGGTTAAAATGG-AATTTACCATATGATGGATA
188 CAGAATCAAAGATAAAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTACCATGTGATGCATA
* * * * *
51106181 CCGAAGTTCTTGTGTCTTATGATTCTTTT
252 GCAAACTTCTCGTGTTTTATGATT-TTTT
** * * * * * * **
51106210 GGATTTCATTTTTAAATATTGAAACTCGAAATTT-GAGTCGAAGTCCATTTC-GCAATTATGGAT
1 TAATTTCATTTTTAAATATTAAAATTCG-AATTTCGAGGC-AAGTTCATTACAG-AATCAAAGAT
* * * *
51106273 AGAGTATAAACTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCATAGAAAAGTAAT-TC-
63 AAAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACT--TCTCG
* * * * *
51106336 TGTTTTGCGCTTTATTTT-ATTTTATTTTTAAATATTAAAATTTAAATTTCGAGG-CAACGTCGG
124 TGTTTT---ATTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAA-GTCCG
* * *
51106399 TTACAGAATAAAAGATAAAGTATAAATTTTTAAGAGTTTAAAATGGAAATTTATCATGTGATGCA
185 TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
*
51106464 TAGCAAACTTCTCGTGTTGTATGATTTTTT
250 TAGCAAACTTCTCGTGTTTTATGATTTTTT
* * *
51106494 TAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAAG-TCGGTTACAAAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGTTC-ATTACAGAATCAAAGATA
*
51106558 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGCAAAA-TTCTCGTG
64 AAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAG-AAAACTTCTCGTG
* * * * * * ** *
51106622 TCTTATAATTTTTTAAATTTATTTTTAACTATTAAAACTCGAATTTTGAGGTGAACTCCGTTACA
126 TTTTAT-TTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTACA
* * * * * ** * **
51106687 GAATTAAAGATAAAGTATAATTTTTTAAGTGGTTAAAATGAAAATTTACAATGCAATGCGTAGTG
190 GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCA
*
51106752 AACTTCTCATGTTTTATGATTTTTT
255 AACTTCTCGTGTTTTATGATTTTTT
* * * * ** * *
51106777 TAACTTGACTTTTAAATATTAAAATTTGAATTTTAAGGTCAAG-TCAGCTACAGAATCAAATATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGTTCA-TTACAGAATCAAAGATA
* *
51106841 AAGTATAAATTTTTAAGAGGTTAAAACGGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
64 AAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGT
* ** * * *
51106906 TTTATGCTTTTCTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCAAAG-TAACGTCGGTTA
127 TTTAT--TTTT-TTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAA-GTCCGTTA
* * * * * * *
51106970 CAAAATCAAAGATAGAGTATAAATTTTGAAGAGGCTAAAATGGAAACTTATCATGTGATGTATAG
188 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
* * *
51107035 CAAGCTTCTCATATTTTATGATTTTTT
253 CAAACTTCTCGTGTTTTATGATTTTTT
* * * *
51107062 TAATTTGATTTTTAAATATTATAATTCGAATTTCGAGGCCAA-ATCAGTTAGAGAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGTTCA-TTACAGAATCAAAGATA
* * * * ** * *
51107126 AAGTATAAATTTTTAATAGGTTAAAATAGAAATTTACAATGTGATGCATTGTGAAGTTTTCGTGT
64 AAGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGT
* * * * * * *
51107191 CTTATGATTATTTTTAA-TTTA-TTTTAAGATTTTGAAACTCGAATTTTGAGGCAAACTCCGTTA
127 -TT-T-ATTTTTTTTAATTTTATTTTTAA-ATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTA
* * * * * *
51107254 CGGAATTAAAGATAAAGTATACATTTTTAAGTGGTTAAAATAGAAATTTACCTTGTGATGCATAG
188 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
* * *
51107319 AAAACTTCTCCTATTTTATGATTTTTTATGAATTTTTA
253 CAAACTTCT-C--------G-TGTTTTATG-ATTTTTT
* ** *
51107357 TAATTTCATTTTTAAATATTAAAATTCAAATTTCGAGGCAACGTTGGTTACAGAATCAAATATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTTCATTACAGAATCAAAGATAA
* * ** *
51107422 AGTATAAAATTTTTAAGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCGAAGTTCTCGTGT
65 AGTAT-AAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGT
* * * ** * *
51107487 CTTATGATTCTTTTTAATTTTATTTTTAAATATTGAAACTCAAATTTTGAGTCGAAGTCCGTTAC
127 -TT-T-ATTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTAC
* * * * * * *
51107552 AAAATTATAA-AAAAAGTATCAACTTTTAAGAGATTAAAATGGAAATTTACCATGTGATGCACAG
189 AGAATCA-AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
* *
51107616 AAAACTAT-TCGTG-TTT-TGCACTTTTT
253 CAAACT-TCTCGTGTTTTATG-ATTTTTT
* * * * *
51107642 T-ATTTTATTTTTAAATATTAAAATTCAAATTTCGAGGCAACTTCAATTACATAATAAAAGATAA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAGTTC-ATTACAGAATCAAAGATAA
* *
51107706 AGTATAAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATA-ACAAACTTCTCCTGT
65 AGTATAAATTTTTAAGA-G-TAAAATGGAAATTTACCATGTGATGCATAGA-AAACTTCTCGTGT
* * *
51107770 TGTATGATTTTTTTTAAATTTCATTTTTAAATATTAAAATTTGAATTTTGAGGCTAAGTCGGTTA
127 T-T-T-ATTTTTTTT-AATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTA
* * * * *
51107835 TAGAATCAAAGATAAAGTATAAATTTTTAAGAGGCTAAAATGTAAATTTACAATGTGATTCATAG
188 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
51107900 CGAAA-TTCTCGTGTTTTATGA-TTTTT
253 C-AAACTTCTCGTGTTTTATGATTTTTT
* * * * *
51107926 TAATTT-ATTTTTAAA-ATTTGAAACTT-GAATTTTGAGGCAAACTCCATTACGGAATCAAAGAT
1 TAATTTCATTTTTAAATA-TT-AAAATTCGAATTTCGAGGC-AAGTTCATTACAGAATCAAAGAT
* * * * * * *
51107988 -AA-TACAAATTTTTAAGTGGTTAAATTGGAAATTTACCTTCTAATGCATAGAAAACTTCTCTTG
63 AAAGTATAAATTTTTAAG-AG-TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTG
* * * * * *
51108051 TTTTATGAATTTTTATAATTTCATTTTAAAATATTAAAATTTGAATTTCGAGG-TAATGTCTGTT
126 TTTTAT---TTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAA-GTCCGTT
* ** *
51108115 ACA-AATCAAATATAAAGTATAAATTTTTAAGAGGAGAAAATGGAAATTTACCATATGATGCATA
187 ACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
* *
51108179 GCATACTTCTCGTGATTTATGATTGTTTT
252 GCAAACTTCTCGTGTTTTATGATT-TTTT
* * * * * * *
51108208 TAGTTTCATTTTTAAATATTAAAATTTGATTTTCTAGGCAAAG-TCGGTTGCGGAATCAAAGATA
1 TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGTTC-ATTACAGAATCAAAGATA
* * * * * ** * *
51108272 CAGTAT-AATCTTTTAAGAGATTAAGATGAAAATTTACAATGTGTTGCATAGCGAAGTTCTAGTG
64 AAGTATAAAT-TTTTAAGAG--TAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTG
* * * * * ** ***
51108336 TCTTTTGATTCTTTTTAATTTCATTTTTAAATACTGAAACTCAAATTTTGAGTTGAAGTCCGTTA
126 --TTTT-ATTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTA
* * * *
51108401 CGGAATTATAGATAAAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
188 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
51108461 TGTAAAGCCC
Statistics
Matches: 5480, Mismatches: 1020, Indels: 555
0.78 0.14 0.08
Matches are distributed among these distances:
263 2 0.00
264 7 0.00
265 10 0.00
266 138 0.03
267 56 0.01
268 3 0.00
269 6 0.00
270 26 0.00
271 5 0.00
272 2 0.00
274 38 0.01
275 22 0.00
277 4 0.00
278 51 0.01
279 12 0.00
280 124 0.02
281 350 0.06
282 255 0.05
283 845 0.15
284 1092 0.20
285 1201 0.22
286 664 0.12
287 116 0.02
288 19 0.00
289 105 0.02
290 5 0.00
293 31 0.01
294 30 0.01
295 62 0.01
296 98 0.02
297 92 0.02
298 9 0.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (279 bp):
TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAGTTCATTACAGAATCAAAGATAAA
GTATAAATTTTTAAGAGTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTCGTGTTTTA
TTTTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTTGAGGCCAAGTCCGTTACAGAATCA
AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
TCGTGTTTTATGATTTTTT
Found at i:51108844 original size:13 final size:11
Alignment explanation
Indices: 51108824--51108857 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 11
51108814 ACTCCCATTA
51108824 TTTTTTTCTTT
1 TTTTTTTCTTT
51108835 CTTCTTTTTCTTT
1 -TT-TTTTTCTTT
51108848 TTTTTTTCTT
1 TTTTTTTCTT
51108858 CTTGGCGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.38
12 4 0.19
13 9 0.43
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:51109163 original size:42 final size:40
Alignment explanation
Indices: 51109117--51109278 Score: 198
Period size: 41 Copynumber: 3.9 Consensus size: 40
51109107 TTGTAAAACG
* *
51109117 CAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCGCTAAAGAC
1 CAGAGCATTAGCGGCGTTTTGGT--AAAACGCCGCTAAAGAC
*
51109159 CAGAGCATTAGCGGCACTTTTGGTAAAACGCCGCTAAAGAC
1 CAGAGCATTAGCGGC-GTTTTGGTAAAACGCCGCTAAAGAC
*
51109200 AAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
1 CAGAGCATTAGCGGCG-TTTTGGTAAAACGCCGCTAAAGAC
* * * * *
51109241 CATAGCATTAGTGGCACTTTTGGTAAATCGCCACTAAA
1 CAGAGCATTAGCGGC-GTTTTGGTAAAACGCCGCTAAA
51109279 AGTCATATAA
Statistics
Matches: 106, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
41 86 0.81
42 14 0.13
43 6 0.06
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (40 bp):
CAGAGCATTAGCGGCGTTTTGGTAAAACGCCGCTAAAGAC
Found at i:51109196 original size:41 final size:41
Alignment explanation
Indices: 51109142--51109278 Score: 220
Period size: 41 Copynumber: 3.3 Consensus size: 41
51109132 GTTTTAGTAA
51109142 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCACTTTTGGT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCACTTTTGGT
* *
51109183 AAAACGCCGCTAAAGACAAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCACTTTTGGT
* *
51109224 AAAACGCCGCTAAAGACCATAGCATTAGTGGCACTTTTGGT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCACTTTTGGT
* *
51109265 AAATCGCCACTAAA
1 AAAACGCCGCTAAA
51109279 AGTCATATAA
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAGACCAGAGCATTAGCGGCACTTTTGGT
Found at i:51109257 original size:82 final size:82
Alignment explanation
Indices: 51109118--51109278 Score: 243
Period size: 82 Copynumber: 2.0 Consensus size: 82
51109108 TGTAAAACGC
51109118 AGAGCAATAGCGGCGTTTTAGTAAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCACTTTTGGT
1 AGAGCAATAGCGGCGTTTTAGT-AAAAACGCCGCTAAAGACCAGAGCATTAGCGGCACTTTTGGT
*
51109183 AAAACGCCGCTAAAGACA
65 AAAACGCCACTAAAGACA
* * * *
51109201 AGAGCATTAGCGGCGCTTTTGGT-AAAACGCCGCTAAAGACCATAGCATTAGTGGCACTTTTGGT
1 AGAGCAATAGCGGCG-TTTTAGTAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCACTTTTGGT
*
51109265 AAATCGCCACTAAA
65 AAAACGCCACTAAA
51109279 AGTCATATAA
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
82 51 0.72
83 14 0.20
84 6 0.08
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.21
Consensus pattern (82 bp):
AGAGCAATAGCGGCGTTTTAGTAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCACTTTTGGTA
AAACGCCACTAAAGACA
Found at i:51109458 original size:14 final size:14
Alignment explanation
Indices: 51109436--51109535 Score: 65
Period size: 14 Copynumber: 6.9 Consensus size: 14
51109426 TTAATTATCA
*
51109436 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
51109450 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
51109464 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
* *
51109478 TTAAGGTTTATGAGT
1 TTATGGTTTAAG-GT
*
51109493 TAACTATGGTTTAAGAT
1 T---TATGGTTTAAGGT
* * *
51109510 ATATGATTTAGGGT
1 TTATGGTTTAAGGT
*
51109524 TTAAGGTTTAAG
1 TTATGGTTTAAG
51109536 AGTTAACTAG
Statistics
Matches: 63, Mismatches: 19, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
14 50 0.79
15 3 0.05
17 1 0.02
18 9 0.14
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:51109471 original size:21 final size:21
Alignment explanation
Indices: 51109447--51109528 Score: 83
Period size: 21 Copynumber: 3.7 Consensus size: 21
51109437 TATAGTTTAA
*
51109447 GGTTTATGGTTTAAGATATAT
1 GGTTTAGGGTTTAAGATATAT
* *
51109468 GGTTTAGGGTTTAAGGTTTAT
1 GGTTTAGGGTTTAAGATATAT
*
51109489 GAGTTAACTATGGTTTAAGATATAT
1 G-GTT---TAGGGTTTAAGATATAT
*
51109514 GATTTAGGGTTTAAG
1 GGTTTAGGGTTTAAG
51109529 GTTTAAGAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
21 29 0.59
22 3 0.06
24 2 0.04
25 15 0.31
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (21 bp):
GGTTTAGGGTTTAAGATATAT
Found at i:51109501 original size:46 final size:46
Alignment explanation
Indices: 51109451--51109544 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
51109441 GTTTAAGGTT
* *
51109451 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAAGAGTTAAC
51109497 TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAAGAGTTAAC
1 TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAAGAGTTAAC
51109543 TA
1 TA
51109545 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.43
Consensus pattern (46 bp):
TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAAGAGTTAAC
Found at i:51109651 original size:7 final size:7
Alignment explanation
Indices: 51109639--51109706 Score: 64
Period size: 7 Copynumber: 9.4 Consensus size: 7
51109629 TGGGTTTGGA
51109639 GTTAAGG
1 GTTAAGG
51109646 GTTAAGG
1 GTTAAGG
51109653 GTTAAGG
1 GTTAAGG
*
51109660 GTTTAGG
1 GTTAAGG
*
51109667 GTTTAATG
1 G-TTAAGG
* *
51109675 TTTATGG
1 GTTAAGG
*
51109682 GATAAGG
1 GTTAAGG
51109689 GTTAAGAG
1 GTTAAG-G
*
51109697 GTTTAGG
1 GTTAAGG
51109704 GTT
1 GTT
51109707 TAGATTAATT
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
7 38 0.79
8 10 0.21
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.37
Consensus pattern (7 bp):
GTTAAGG
Found at i:51109707 original size:7 final size:7
Alignment explanation
Indices: 51109630--51109709 Score: 54
Period size: 7 Copynumber: 11.1 Consensus size: 7
51109620 TGTGTAAGCT
51109630 GGGTTT-
1 GGGTTTA
*
51109636 GGAGTTAA
1 GG-GTTTA
*
51109644 GGGTTAA
1 GGGTTTA
*
51109651 GGGTTAA
1 GGGTTTA
51109658 GGGTTTA
1 GGGTTTA
51109665 GGGTTTA
1 GGGTTTA
**
51109672 ATGTTTA
1 GGGTTTA
* *
51109679 TGGGATAA
1 -GGGTTTA
*
51109687 GGGTTAA
1 GGGTTTA
51109694 GAGGTTTA
1 G-GGTTTA
51109702 GGGTTTA
1 GGGTTTA
51109709 G
1 G
51109710 ATTAATTAGT
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
6 2 0.03
7 47 0.78
8 11 0.18
ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36
Consensus pattern (7 bp):
GGGTTTA
Found at i:51116330 original size:19 final size:19
Alignment explanation
Indices: 51116308--51116348 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
51116298 TTTATTGATA
51116308 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
51116326 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
51116345 TTTT
1 TTTT
51116349 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:51118652 original size:143 final size:142
Alignment explanation
Indices: 51118401--51120173 Score: 1598
Period size: 143 Copynumber: 12.5 Consensus size: 142
51118391 GGCAACGTCA
* * *
51118401 GTTACAAAATCAAAGATAAAGTTTAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATGTGATGC
1 GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
** ** * * * *
51118466 ATAGCGATGTTCTCGTG-TCTTATGAGTCTTTTTAATTTCATTTTTAAATATTGAAACTATAATT
66 ATAGAAAACTTCTTGTGTTC-TATGA-TTTTTTTAATTTCATTTTTAAATATTAAAACTCTAATT
*
51118530 TTGAGGCAAAGTTC
129 TCGAGGCAAAGTTC
* * * * *
51118544 GTTACAAAATTATAGATAAAGTATATATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGC
1 GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
* * * * * *
51118609 ATAGAAAACTCCTTGTGTTCTATGCTTTTATTTTATTTTATTTTTAAATATTAAAATTCGAATTT
66 ATAGAAAACTTCTTGTGTTCTATGATTTT-TTTAATTTCATTTTTAAATATTAAAACTCTAATTT
* *
51118674 CAAGGCAACG-TC
130 CGAGGCAAAGTTC
* * * * *
51118686 GATTACAGAATCAAAGAGAAAGTATAAATTTTAAAGAGGATAAAATAGAAATTTACCATATGATG
1 G-TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
* * * * * * *
51118751 CATAGCAAGCTT-TTCGTGTTTTATGA-TTTTTTAATTTGA-TTTTAAATATTAAAATTCGAAAT
65 CATAGAAAACTTCTT-GTGTTCTATGATTTTTTTAATTTCATTTTTAAATATTAAAACTCTAATT
*
51118813 TCGAGGCAACG-TC
129 TCGAGGCAAAGTTC
* * *
51118826 GGTTACAGAATCAAAGATAAAGTACAAATTTTTAGGAGGTTAAAATGGAAATTTACAATGTGATG
1 -GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
** * * * * *
51118891 CATAGTGAAGTTCTCGTG-TCTTAGGATTGTTTTTAATTT-A-TTTTAAGATTTTGAAACTCTAA
65 CATAGAAAACTTCTTGTGTTC-TATGATT-TTTTTAATTTCATTTTTAA-ATATTAAAACTCTAA
* ***
51118953 TTTTGAGGCAAACCCC
127 TTTCGAGGCAAAGTTC
* ** * * * * *
51118969 GCTATGGAATTAAAGATAATGTAGAAATTTTTAAGTGGTTAAAATTGAAATTTACCATGTGATGC
1 GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
** * * * *
51119034 ATAGAAAACTTCTCATGTTTTATGATTTTTTATAATATCATTTTTAAAT-TTTAAACTTCGAATT
66 ATAGAAAACTTCTTGTGTTCTATGATTTTTT-TAATTTCATTTTTAAATATTAAAAC-TCTAATT
51119098 TCGAGGCAACA--TC
129 TCGAGGCAA-AGTTC
* * * *
51119111 GATTAGAGAATCAAATATAAAGTATAAATTTTTAAGTGGTTTAAATGGAAATTTACCATGTGATG
1 G-TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
* * * * * *
51119176 CATAAAAAACTTCTCGTGATT-TATGATTTTTTTTAATTTCATTTTTAAATAATAAAATTCGATT
65 CATAGAAAACTTCTTGTG-TTCTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAACTCTAAT
* ** * *
51119240 TTCTAGGTGAAGCTG
128 TTCGAGGCAAAGTTC
* * * * * * *
51119255 GTTACAGAATCAAAGATACAGTACAAATTTTTAAGAGATTAAGATAGAAATTTGCAATGTGATGC
1 GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
** * *** * * * * * *
51119320 ATAGTGAAGTTAACGTG-TCTTATTAATATTTTTAATTTTATTTTTAAATATTGATACTCGAATT
66 ATAGAAAACTTCTTGTGTTC-TA-TGATTTTTTTAATTTCATTTTTAAATATTAAAACTCTAATT
* ** *
51119384 TCAAGGTGAAGTCC
129 TCGAGGCAAAGTTC
* * * * *
51119398 GTTACAGAATCAATGATAAAGTATAAATTTTTAAGAGTTTAAATTGGAAATTTACCATGTGACGT
1 GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
* ** ** * * * * * *
51119463 GTAGAAAACTAATTGTGTGT-TGCGCTTTTTGTAATTTTATTTTTAAATATTAAAATTCGAGTTT
66 ATAGAAAACTTCTTGTGT-TCTATGATTTTTTTAATTTCATTTTTAAATATTAAAACTCTAATTT
** * *
51119527 TAAGGCAACGTTA
130 CGAGGCAAAGTTC
*
51119540 GTTACAGAGTCAAAGATTAAAGTATAAATTTTTAAGAGGTTAGAAA--GAAAGTTTACCATGTGA
1 GTTACAGAATCAAAGA-TAAAGTATAAATTTTTAAGAGGTTA-AAATGGAAA-TTTACCATGTGA
** ** * * * *
51119603 TGCATAGCGATGTT-TTCGTG-TCTTATGAGTCTTTTTAATTTCATTTTTAGATATTGAAACTCG
63 TGCATAGAAAACTTCTT-GTGTTC-TATGA-TTTTTTTAATTTCATTTTTAAATATTAAAACTCT
*
51119666 AATTTTGAGGCAAAGTTC
125 AATTTCGAGGCAAAGTTC
* * * * * *
51119684 GTTACGGAATTATAGATAAAGTATATATTTTTAAGAGTTTAAAATGGAAATTTACCATTTGATGC
1 GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
* * * *
51119749 ATAGAAAACTTCTTGTGTTTTAT--TTTTTTTAATTTCATTTTTAAGTATTAAAATTCTAATTTT
66 ATAGAAAACTTCTTGTGTTCTATGATTTTTTTAATTTCATTTTTAAATATTAAAACTCTAATTTC
* *
51119812 AAGGCAACG-TC
131 GAGGCAAAGTTC
* * * *
51119823 GGTTACAGATTCAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATAGAAATTTACCATGGGATG
1 -GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
* * * * *
51119888 TATATAAAACTTCTTGTGTTTTATGATTTTTTATAATTTCATTTTTAAATAGTAAAAAATCTAAT
65 CATAGAAAACTTCTTGTGTTCTATGATTTTTT-TAATTTCATTTTTAAATA-TTAAAACTCTAAT
51119953 TTCGAGGCAACA-TT-
128 TTCGAGGCAA-AGTTC
* * *
51119967 GTTTACAGAATCAAAGATAAAGTATAAATTTTTAAGTGATTAAAATGGAAATTTATCATGTGATG
1 G-TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
* * * * * *
51120032 CATAGCAAAGTTCTTGTGTTTTATGATTTTTTTAACTTCATTTTTAAATATTAAAATTCAAATTT
65 CATAGAAAACTTCTTGTGTTCTATGATTTTTTTAATTTCATTTTTAAATATTAAAACTCTAATTT
*
51120097 CGAGGCCAAGTT-
130 CGAGGCAAAGTTC
* *
51120109 GATTACAGAATCAAAGATAAAGTATAAATTTTTAAGGGGTTAAAATGGAAATTTACAATGTGATG
1 G-TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
51120174 TGTAACACCC
Statistics
Matches: 1330, Mismatches: 252, Indels: 97
0.79 0.15 0.06
Matches are distributed among these distances:
139 3 0.00
140 221 0.17
141 25 0.02
142 279 0.21
143 607 0.46
144 193 0.15
145 2 0.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (142 bp):
GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
ATAGAAAACTTCTTGTGTTCTATGATTTTTTTAATTTCATTTTTAAATATTAAAACTCTAATTTC
GAGGCAAAGTTC
Found at i:51122621 original size:142 final size:142
Alignment explanation
Indices: 51122397--51124095 Score: 1544
Period size: 143 Copynumber: 12.0 Consensus size: 142
51122387 TGTTTTGCGC
* * * * * *
51122397 TTTTTTTAATTTTATTTTTAAATGTTAAAATTTGAAATTCGAGGCAACGTCAGTTACAGAATCAA
1 TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAAGTCGGTTACAGAATCAA
* * * * *
51122462 AGATAAAATATAAATTTTTAAGA-GTTTACATGGAAATTTATCATGTGATGCATAGCAAACTTGT
66 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCT
51122526 CGTGTTTTATGA
131 CGTGTTTTATGA
* * * *
51122538 TTTCTTTTAATTTCATTTTTAGATATTAGAATTCGAATGTCGAGGCAAAGTCAGTTACAGAATCA
1 TTT-TTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAAGTCGGTTACAGAATCA
* * * * *
51122603 AAGATAAAGTATAAATTTTTAAGAGATTAAAATAGAAATTTACAATGTGATGCATAGCGAAGTTC
65 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
*
51122668 TCGTGTCTTATGA
130 TCGTGTTTTATGA
* * * * * *
51122681 TTGTTTTTAATAT-ATTTTT-AA-A-T---ACT-GAAATT---GGCAAACTCCGTTAC-GCAATT
1 TT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAAGTCGGTTACAG-AATC
* * * * *
51122734 AAAGATAAAGTATAAATTTTGAAGTGGTTAAAATTGAAATTTACCATGTAATGCATAGAAAACTT
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTT
*
51122799 ATCGTGTTTTATGA
129 CTCGTGTTTTATGA
* * * * * *
51122813 TTTTTTATAATTTCATTTTTAAATATTAAAATTTGAATTTCTAGGCAACGTTGGTTTCGGAATCA
1 TTTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAAGTCGGTTACAGAATCA
* * * * *
51122878 AAGATAAAGTATAAACTTTTAAAAGGTTAAAAAGGAAATTTATCATGTGATGCATAGAAAACTTC
65 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
*
51122943 TCGTCTTTTATGA
130 TCGTGTTTTATGA
* * * *
51122956 TTTTTTTTAATTTCATTTTTAAATATTATAATTCGAATTCCGAGGCCAAGTCGGTTACAGAATTA
1 -TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAAGTCGGTTACAGAATCA
* * * * ** *
51123021 AAGGTAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTATCATGTGATGCATGGTGAAGTTC
65 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
**
51123086 TCGTGTCCTATGA
130 TCGTGTTTTATGA
* * * * * * * ** *
51123099 TTCTTTTGAATTTCAGTTTTAAATATTGAAACTCGAATTTTGAGTCGAAGTTTGTTACGGAA-CT
1 TT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAAGTCGGTTACAGAATC-
* * * * *
51123163 ATAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATGTGATGTATAGAAAACTA
64 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTT
* * ** *
51123228 ATTGTGTTTTGCGC
129 CTCGTGTTTTATGA
* * * *
51123242 TTTTTTAAAATTT-ATTTTTAAATATTAAAATTCGAGTTTCAAGGC-AACTCGGTTACAGAAT-A
1 TTTTTT-TAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAAGTCGGTTACAGAATCA
* * * * * * * *
51123304 ACAGATAAAGTATAAATTTTTAAAAGGTTAAAGTAGAATTTTACAATGTGACGCATAGCGAAGTT
65 A-AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTT
*
51123369 CTCGTGTCTTATGTA
129 CTCGTGTTTTATG-A
* * * * * *** **
51123384 TCTTTTTAATTTCATTTTTAAATGTTAAAACTCAAATTTTGAGATGAAGTCCATTACAGAATCAA
1 TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAAGTCGGTTACAGAATCAA
* * * *
51123449 AGATAAAGTTTGAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTAATGCATAGCGAAA-TTG
66 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC-AAACTTC
* * *
51123513 TCATGTCTTAAGA
130 TCGTGTTTTATGA
* * * * * *
51123526 TTCTTTTGAATTTCATTTTTAAATATTGAAACTCGAATCTT-GAGTCGAAGTCCGTTAC-GAAAT
1 TT-TTTTTAATTTCATTTTTAAATATTAAAATTCGAAT-TTCGAGGCAAAGTCGGTTACAG-AAT
* * * * * * *
51123589 TATAGATAAAGTATAAACTTTTAAGAGGTTAATAA-AGAATTTTACCATGTGATGCATAGAAAAA
63 CAAAGATAAAGTATAAATTTTTAAGAGGTTAA-AATGGAAATTTACCATGTGATGCATAGCAAAC
** * ** *
51123653 TAATTGTGTTTTGCGCT
127 TTCTCGTGTTTTATG-A
* * * * * *
51123670 TTTTTTTAATTT-ATTTTTAAATATTAAAATTC-AAGTTTCAATGC-AACTCGGGTACAAAATAA
1 TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAA-TTTCGAGGCAAAGTCGGTTACAGAATCA
* * * *
51123732 AAGATAAAGTATAAATTTTTAAGAGGTT-AAATAGTAATTTACAATGT-AGTGCATAGCAAAGTT
65 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGA-TGCATAGCAAACTT
* *
51123795 CTCATGTCTTATGAA
129 CTCGTGTTTTATG-A
* * * * * * *
51123810 TTTTTTTAATTTCATTTTTAAATGTTGAAACTCGAATTTTGAGTCGAAGTCTGTTACAGAATCAA
1 TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAAGTCGGTTACAGAATCAA
* * * * *
51123875 ATATATAGTTTGAATTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGCAAACTTCT
66 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCT
*
51123940 CGTGTTTTAAGA
131 CGTGTTTTATGA
* * * * * * *
51123952 TTTTTTTAATTTCAATTTTAAATATTAAAATACGAATTTCTAGG-AGAAATCGATTACATAATTA
1 TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCA-AAGTCGGTTACAGAATCA
** * *
51124016 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAAAATGTGATGCATAGCGAAGTTC
65 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* *
51124081 TTGTGTCTTATGA
130 TCGTGTTTTATGA
51124094 TT
1 TT
51124096 CTTAGTCTAT
Statistics
Matches: 1245, Mismatches: 268, Indels: 89
0.78 0.17 0.06
Matches are distributed among these distances:
131 5 0.00
132 91 0.07
133 6 0.00
134 2 0.00
135 5 0.00
136 3 0.00
139 6 0.00
140 50 0.04
141 143 0.11
142 327 0.26
143 588 0.47
144 19 0.02
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (142 bp):
TTTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAAGTCGGTTACAGAATCAA
AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCT
CGTGTTTTATGA
Found at i:51123405 original size:284 final size:282
Alignment explanation
Indices: 51122366--51124072 Score: 1370
Period size: 284 Copynumber: 6.0 Consensus size: 282
51122356 GGGCATTACA
* * * * * * * *
51122366 TGATGCATGGGAAACTAATTGTGTTTTGCGCTTTTTTTAATTTTATTTTTAAATGTTAAAATTTG
1 TGATGCATAGAAAACTAATCGTGTTTTACGATTTTTTTAAATTTATTTTTAAATATTAAAATTCG
* * * * * *
51122431 AAATTCGAGGCAACGTCAGTTACAGAATCAAAGATAAAATATAAATTTTTAAGA-GTTTACATGG
66 AATTTCGAGGCAAC-TCGGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAT-G
* * * *
51122495 AAATTTATCATGTGATGCATAGCAAACTTGTCGTGTTTTATGATTTCTTTTAATTTCATTTTTAG
129 AAATTTATCATGTGATGCATAGCAAACTTCTCGTGTCTTATGATCT-TTTTAATTTCATTTTTAA
* * * * *
51122560 ATATTAGAATTCGAATGTCGAGGCAAAGTCAGTTACAGAATCAAAGATAAAGTATAAATTTTTAA
193 ATATTAAAACTCGAATTTTGAGGCGAAGTCAGTTACAGAATCAAAGATAAAGTATAAATTTTTAA
* *
51122625 GAGATTAAAATA-GAAATTTACAATG
258 GAGGTTAAAA-AGGAAATTTACCATG
** * ** * * * * *
51122650 TGATGCATAGCGAAGTTCTCGTGTCTTATGATTGTTTTT-AATATATTTTTAAATACTGAAATT-
1 TGATGCATAGAAAACTAATCGTGTTTTACGATT-TTTTTAAATTTATTTTTAAATATTAAAATTC
* * * *
51122713 G----GC-A---AACTCCGTTAC-GCAATTAAAGATAAAGTATAAATTTTGAAGTGGTTAAAATT
65 GAATTTCGAGGCAACTCGGTTACAG-AATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAA-T
* * * * * *
51122769 GAAATTTACCATGTAATGCATAGAAAACTTATCGTGTTTTATGATTTTTTATAATTTCATTTTTA
128 GAAATTTATCATGTGATGCATAGCAAACTTCTCGTGTCTTATGATCTTTT-TAATTTCATTTTTA
* * ** * * *
51122834 AATATTAAAATTTGAATTTCT-AGGC-AACGTTGGTTTCGGAATCAAAGATAAAGTATAAACTTT
192 AATATTAAAACTCGAATTT-TGAGGCGAA-GTCAGTTACAGAATCAAAGATAAAGTATAAATTTT
* *
51122897 TAAAAGGTTAAAAAGGAAATTTATCATG
255 TAAGAGGTTAAAAAGGAAATTTACCATG
** * * * *
51122925 TGATGCATAGAAAACTTCTCGTCTTTTATGATTTTTTTTAATTTCATTTTTAAATATTATAATTC
1 TGATGCATAGAAAACTAATCGTGTTTTACGATTTTTTTAAATTT-ATTTTTAAATATTAAAATTC
* * *
51122990 GAATTCCGAGGCCAAGTCGGTTACAGAATTAAAGGTAAAGTATAAATTTTTAAGAGGTTAAAATG
65 GAATTTCGAGG-CAACTCGGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATG
* ** * * * *
51123055 AAAATTTATCATGTGATGCATGGTGAAGTTCTCGTGTCCTATGATTCTTTTGAATTTCAGTTTTA
129 -AAATTTATCATGTGATGCATAGCAAACTTCTCGTGTCTTATGA-TCTTTTTAATTTCATTTTTA
* * ** * *
51123120 AATATTGAAACTCGAATTTTGAGTCGAAGTTTGTTACGGAA-CTATAGATAAAGTATAAATTTTT
192 AATATTAAAACTCGAATTTTGAGGCGAAGTCAGTTACAGAATC-AAAGATAAAGTATAAATTTTT
51123184 AAGAGGTTAAAAAGGAAATTTACCATG
256 AAGAGGTTAAAAAGGAAATTTACCATG
* * * * *
51123211 TGATGTATAGAAAACTAATTGTGTTTTGCGCTTTTTTAAAATTTATTTTTAAATATTAAAATTCG
1 TGATGCATAGAAAACTAATCGTGTTTTACGATTTTTTTAAATTTATTTTTAAATATTAAAATTCG
* * * *
51123276 AGTTTCAAGGCAACTCGGTTACAGAA-TAACAGATAAAGTATAAATTTTTAAAAGGTTAAAGTAG
66 AATTTCGAGGCAACTCGGTTACAGAATTAA-AGATAAAGTATAAATTTTTAAGAGGTTAAAAT-G
* * * *
51123340 AATTTTA-CAATGTGACGCATAGCGAAGTTCTCGTGTCTTATGTATCTTTTTAATTTCATTTTTA
129 AAATTTATC-ATGTGATGCATAGCAAACTTCTCGTGTCTTATG-ATCTTTTTAATTTCATTTTTA
* * ** * *
51123404 AATGTTAAAACTCAAATTTTGAGATGAAGTCCA-TTACAGAATCAAAGATAAAGTTTGAATTTTT
192 AATATTAAAACTCGAATTTTGAGGCGAAGT-CAGTTACAGAATCAAAGATAAAGTATAAATTTTT
*
51123468 AAGAGGTTAAAATGGAAATTTACCATG
256 AAGAGGTTAAAAAGGAAATTTACCATG
* * ** * * * * * * *
51123495 TAATGCATAGCGAAA-TTGTCATGTCTTAAGATTCTTTTGAATTTCATTTTTAAATATTGAAACT
1 TGATGCATAG-AAAACTAATCGTGTTTTACGATTTTTTTAAATTT-ATTTTTAAATATTAAAATT
* * * * *
51123559 CGAATCTT-GAGTCGAAGTCCGTTAC-GAAATTATAGATAAAGTATAAACTTTTAAGAGGTTAAT
64 CGAAT-TTCGAGGC-AACTCGGTTACAG-AATTAAAGATAAAGTATAAATTTTTAAGAGGTTAA-
* * * * * ** * * ** * *
51123622 AAAGAATTTTACCATGTGATGCATAGAAAAATAATTGTGTTTTGCGCTTTTTTTTAATTT-ATTT
125 AATGAAATTTATCATGTGATGCATAGCAAACTTCTCGTGTCTTATG-ATCTTTTTAATTTCATTT
* ** * * * * * *
51123686 TTAAATATTAAAATTC-AAGTTTCAATGC-AACTCGGGTACAAAATAAAAGATAAAGTATAAATT
189 TTAAATATTAAAACTCGAA-TTTTGAGGCGAAGTCAGTTACAGAATCAAAGATAAAGTATAAATT
* * *
51123749 TTTAAGAGGTTAAATA-GTAATTTACAATG
253 TTTAAGAGGTTAAAAAGGAAATTTACCATG
* * ** * * * * * *
51123778 T-AGTGCATAGCAAAGTTCTCATGTCTTATGAATTTTTTT-AATTTCATTTTTAAATGTTGAAAC
1 TGA-TGCATAGAAAACTAATCGTGTTTTACG-ATTTTTTTAAATTT-ATTTTTAAATATTAAAAT
* * * * * * * * *
51123841 TCGAATTTTGAGTCGAAGTCTGTTACAGAATCAAATATATAGTTTGAATTTTTAAGAGGTTAAAA
63 TCGAATTTCGAGGC-AACTCGGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAA
* * * *
51123906 TGGAAATTTATCATGTGATGCATAGCAAACTTCTCGTGTTTTAAGATTTTTTTAATTTCAATTTT
127 T-GAAATTTATCATGTGATGCATAGCAAACTTCTCGTGTCTTATGATCTTTTTAATTTCATTTTT
* * * *
51123971 AAATATTAAAA-TACGAATTTCT-AGGAGAAATC-GATTACATAATTAAAGATAAAGTATAAATT
191 AAATATTAAAACT-CGAATTT-TGAGGCGAAGTCAG-TTACAGAATCAAAGATAAAGTATAAATT
* **
51124033 TTTAAGAGGTTAAAATGGAAATTTAAAATG
253 TTTAAGAGGTTAAAAAGGAAATTTACCATG
51124063 TGATGCATAG
1 TGATGCATAG
51124073 CGAAGTTCTT
Statistics
Matches: 1158, Mismatches: 209, Indels: 111
0.78 0.14 0.08
Matches are distributed among these distances:
273 1 0.00
274 43 0.04
275 168 0.15
276 17 0.01
277 1 0.00
278 1 0.00
279 1 0.00
281 1 0.00
282 22 0.02
283 168 0.15
284 335 0.29
285 108 0.09
286 280 0.24
287 12 0.01
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (282 bp):
TGATGCATAGAAAACTAATCGTGTTTTACGATTTTTTTAAATTTATTTTTAAATATTAAAATTCG
AATTTCGAGGCAACTCGGTTACAGAATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAA
ATTTATCATGTGATGCATAGCAAACTTCTCGTGTCTTATGATCTTTTTAATTTCATTTTTAAATA
TTAAAACTCGAATTTTGAGGCGAAGTCAGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAG
GTTAAAAAGGAAATTTACCATG
Found at i:51123467 original size:427 final size:424
Alignment explanation
Indices: 51122366--51124072 Score: 1887
Period size: 427 Copynumber: 4.0 Consensus size: 424
51122356 GGGCATTACA
* * * * * *
51122366 TGATGCATGGGAAACTAATTGTGTTTTGCGCTTTTTTTAATTTTATTTTTAAATGTTAAAATTTG
1 TGATGCATAGAAAACTAATTGTGTTTTGCGCTTTTTTAAAATTTATTTTTAAATATTAAAATTCG
* * * * * * * *
51122431 AAATTCGAGGCAACGTCAGTTACAGAATCAAAGATAAAATATAAATTTTTAAGAGTTTACATGGA
66 AATTTCAAGGCAACGTCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAAAGGTTAAATAGA
* * *
51122496 AATTTATCATGTGATGCATAGCAAACTTGTCGTGTTTTATGATTTCTTTTAATTTCATTTTTAGA
131 AATTTATCATGTGATGCATAGCAAACTTCTCGTGTCTTATGATTT-TTTTAATTTCATTTTTAAA
* * * *
51122561 TATTAGAATTCGAATGTCGAGGCAAAGT-CAGTTACAGAATCAAAGATAAAGTATAAATTTTTAA
195 TATTAAAACTCGAATTTCGAGGCGAAGTCCA-TTACAGAATCAAAGATAAAGTATAAATTTTTAA
* * *
51122625 GAGATTAAAAT-AGAAATTTA-CAATGTGATGCATAGCGAAGTTCTCGTGTCTTATGATTGTTTT
259 GAGGTTAAAATGA-AAATTTATC-ATGTGATGCATAGCGAAGTTCTCGTGTCTTAAGATTCTTTT
* * * * * * *
51122688 TAATAT-ATTTTTAA-A-T--ACT-GAA-ATTG-G-CAAACTCCGTTACGCAATTAAAGATAAAG
322 GAATTTCATTTTAAATATTAAACTCGAATTTTGAGTCGAAGTCCGTTACGAAATTAAAGATAAAG
* * **
51122744 TATAAATTTTGAAGTGGTTAAAATTGAAATTTACCATG
387 TATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATG
* * * ** * * *
51122782 TAATGCATAGAAAACTTATCGTGTTTTATGATTTTTTATAATTTCATTTTTAAATATTAAAATTT
1 TGATGCATAGAAAACTAATTGTGTTTTGCGCTTTTTTAAAATTT-ATTTTTAAATATTAAAATTC
* * * * * *
51122847 GAATTTCTAGGCAACGTTGGTTTCGGAATCAAAGATAAAGTATAAACTTTTAAAAGGTTAAAAAG
65 GAATTTCAAGGCAACGTCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAAAGGTTAAATA-
* * *
51122912 GAAATTTATCATGTGATGCATAGAAAACTTCTCGTCTTTTATGATTTTTTTTAATTTCATTTTTA
129 GAAATTTATCATGTGATGCATAGCAAACTTCTCGTGTCTTATGA-TTTTTTTAATTTCATTTTTA
* * * * ** * *
51122977 AATATTATAATTCGAATTCCGAGGCCAAGTCGGTTACAGAATTAAAGGTAAAGTATAAATTTTTA
193 AATATTAAAACTCGAATTTCGAGGCGAAGTCCATTACAGAATCAAAGATAAAGTATAAATTTTTA
* * * *
51123042 AGAGGTTAAAATGAAAATTTATCATGTGATGCATGGTGAAGTTCTCGTGTCCTATGATTCTTTTG
258 AGAGGTTAAAATGAAAATTTATCATGTGATGCATAGCGAAGTTCTCGTGTCTTAAGATTCTTTTG
** * * *
51123107 AATTTCAGTTTTAAATATTGAAACTCGAATTTTGAGTCGAAGTTTGTTACGGAACTATAGATAAA
323 AATTTCA-TTTTAAATATT-AAACTCGAATTTTGAGTCGAAGTCCGTTACGAAATTAAAGATAAA
51123172 GTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATG
386 GTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATG
*
51123211 TGATGTATAGAAAACTAATTGTGTTTTGCGCTTTTTTAAAATTTATTTTTAAATATTAAAATTCG
1 TGATGCATAGAAAACTAATTGTGTTTTGCGCTTTTTTAAAATTTATTTTTAAATATTAAAATTCG
*
51123276 AGTTTCAAGGCAAC-TCGGTTACAGAAT-AACAGATAAAGTATAAATTTTTAAAAGGTTAAAGTA
66 AATTTCAAGGCAACGTCGGTTACAGAATCAA-AGATAAAGTATAAATTTTTAAAAGGTTAAA-TA
* * * * *
51123339 GAATTTTA-CAATGTGACGCATAGCGAAGTTCTCGTGTCTTATGTATCTTTTTAATTTCATTTTT
129 GAAATTTATC-ATGTGATGCATAGCAAACTTCTCGTGTCTTATG-ATTTTTTTAATTTCATTTTT
* * * ** * *
51123403 AAATGTTAAAACTCAAATTTTGAGATGAAGTCCATTACAGAATCAAAGATAAAGTTTGAATTTTT
192 AAATATTAAAACTCGAATTTCGAGGCGAAGTCCATTACAGAATCAAAGATAAAGTATAAATTTTT
* * * * * *
51123468 AAGAGGTTAAAATGGAAATTTACCATGTAATGCATAGCGAAATTGTCATGTCTTAAGATTCTTTT
257 AAGAGGTTAAAATGAAAATTTATCATGTGATGCATAGCGAAGTTCTCGTGTCTTAAGATTCTTTT
* *
51123533 GAATTTCATTTTTAAATATTGAAACTCGAATCTTGAGTCGAAGTCCGTTACGAAATTATAGATAA
322 GAATTTCA-TTTTAAATATT-AAACTCGAATTTTGAGTCGAAGTCCGTTACGAAATTAAAGATAA
* *
51123598 AGTATAAACTTTTAAGAGGTTAATAAA-GAATTTTACCATG
385 AGTATAAATTTTTAAGAGGTTAA-AAAGGAAATTTACCATG
* **
51123638 TGATGCATAGAAAAATAATTGTGTTTTGCGCTTTTTTTTAATTTATTTTTAAATATTAAAATTC-
1 TGATGCATAGAAAACTAATTGTGTTTTGCGCTTTTTTAAAATTTATTTTTAAATATTAAAATTCG
* * * * *
51123702 AAGTTTCAATGCAAC-TCGGGTACAAAATAAAAGATAAAGTATAAATTTTTAAGAGGTTAAATAG
66 AA-TTTCAAGGCAACGTCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAAAGGTTAAATAG
* * *
51123766 TAATTTA-CAATGT-AGTGCATAGCAAAGTTCTCATGTCTTATGAATTTTTTTAATTTCATTTTT
130 AAATTTATC-ATGTGA-TGCATAGCAAACTTCTCGTGTCTTATG-ATTTTTTTAATTTCATTTTT
* * * * ** * * * *
51123829 AAATGTTGAAACTCGAATTTTGAGTCGAAGTCTGTTACAGAATCAAATATATAGTTTGAATTTTT
192 AAATATTAAAACTCGAATTTCGAGGCGAAGTCCATTACAGAATCAAAGATAAAGTATAAATTTTT
* * * *
51123894 AAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGCAAACTTCTCGTGTTTTAAGATT-TTTT
257 AAGAGGTTAAAATGAAAATTTATCATGTGATGCATAGCGAAGTTCTCGTGTCTTAAGATTCTTTT
* * ** *
51123958 TAATTTCAATTTTAAATATTAAAATACGAATTTCT-AGGAGAAAT-CGATTAC-ATAATTAAAGA
322 GAATTTC-ATTTTAAATATTAAACT-CGAATTT-TGAGTCGAAGTCCG-TTACGA-AATTAAAGA
* **
51124020 TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAAAATG
382 TAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATG
51124063 TGATGCATAG
1 TGATGCATAG
51124073 CGAAGTTCTT
Statistics
Matches: 1103, Mismatches: 157, Indels: 53
0.84 0.12 0.04
Matches are distributed among these distances:
416 33 0.03
417 70 0.06
418 172 0.16
419 6 0.01
420 6 0.01
421 1 0.00
422 1 0.00
424 9 0.01
425 94 0.09
426 176 0.16
427 403 0.37
428 40 0.04
429 92 0.08
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (424 bp):
TGATGCATAGAAAACTAATTGTGTTTTGCGCTTTTTTAAAATTTATTTTTAAATATTAAAATTCG
AATTTCAAGGCAACGTCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAAAGGTTAAATAGA
AATTTATCATGTGATGCATAGCAAACTTCTCGTGTCTTATGATTTTTTTAATTTCATTTTTAAAT
ATTAAAACTCGAATTTCGAGGCGAAGTCCATTACAGAATCAAAGATAAAGTATAAATTTTTAAGA
GGTTAAAATGAAAATTTATCATGTGATGCATAGCGAAGTTCTCGTGTCTTAAGATTCTTTTGAAT
TTCATTTTAAATATTAAACTCGAATTTTGAGTCGAAGTCCGTTACGAAATTAAAGATAAAGTATA
AATTTTTAAGAGGTTAAAAAGGAAATTTACCATG
Found at i:51126234 original size:3 final size:3
Alignment explanation
Indices: 51126228--51126253 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
51126218 CTCCTCCTCG
51126228 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
51126254 GCCATCCTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:51130916 original size:11 final size:11
Alignment explanation
Indices: 51130900--51130925 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
51130890 AATATAAATT
51130900 TAAATATTAAA
1 TAAATATTAAA
51130911 TAAATATTAAA
1 TAAATATTAAA
51130922 TAAA
1 TAAA
51130926 AGATTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAAATATTAAA
Found at i:51137141 original size:20 final size:21
Alignment explanation
Indices: 51137107--51137145 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
51137097 ATTAATTTAC
*
51137107 ATATATAACCTTTATAATAAA
1 ATATATAACCATTATAATAAA
51137128 ATATA-AACCATTATAATA
1 ATATATAACCATTATAATA
51137146 TAGGGTCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (21 bp):
ATATATAACCATTATAATAAA
Found at i:51141784 original size:40 final size:40
Alignment explanation
Indices: 51141729--51141955 Score: 400
Period size: 40 Copynumber: 5.7 Consensus size: 40
51141719 AACATTGGAT
51141729 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51141769 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51141809 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * * *
51141849 CATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51141889 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
51141929 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
51141956 ATGTGTTTGC
Statistics
Matches: 177, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:51144878 original size:18 final size:18
Alignment explanation
Indices: 51144855--51144895 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
51144845 TGTACAAAGT
51144855 TAGATTTACTGAAAAATA
1 TAGATTTACTGAAAAATA
51144873 TAGATTTACTGAAAAATA
1 TAGATTTACTGAAAAATA
51144891 TAGAT
1 TAGAT
51144896 ATAAGATCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.34
Consensus pattern (18 bp):
TAGATTTACTGAAAAATA
Found at i:51155034 original size:34 final size:34
Alignment explanation
Indices: 51154988--51155053 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
51154978 AAGGCCTTGC
* *
51154988 TACTGTGTTCTGAAAAGGGCTTCGGTCCACTGTA
1 TACTGTGTTCTGAAAAGGGCTTAGGCCCACTGTA
*
51155022 TACTGT-TATCTGAATAGGGCTTAGGCCCACTG
1 TACTGTGT-TCTGAAAAGGGCTTAGGCCCACTG
51155054 GGCTCGAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 1 0.04
34 27 0.96
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (34 bp):
TACTGTGTTCTGAAAAGGGCTTAGGCCCACTGTA
Found at i:51171859 original size:21 final size:19
Alignment explanation
Indices: 51171833--51171903 Score: 58
Period size: 19 Copynumber: 3.7 Consensus size: 19
51171823 ATTTCAGTTG
*
51171833 AAAACCCTAAACCCTTTTTGA
1 AAAACCCTAAA-CCTTATT-A
*
51171854 AAAACCTTAAACCTTATTA
1 AAAACCCTAAACCTTATTA
*
51171873 AAAACCTTAATA--TTATT-
1 AAAACCCTAA-ACCTTATTA
*
51171890 TAAACCCTAAACCT
1 AAAACCCTAAACCT
51171904 AAAAATATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
16 1 0.02
17 8 0.19
18 6 0.14
19 11 0.26
20 7 0.16
21 10 0.23
ACGTcount: A:0.44, C:0.24, G:0.01, T:0.31
Consensus pattern (19 bp):
AAAACCCTAAACCTTATTA
Found at i:51171877 original size:19 final size:21
Alignment explanation
Indices: 51171833--51171882 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 21
51171823 ATTTCAGTTG
* *
51171833 AAAACCCTAAACCCTTTTTGA
1 AAAACCTTAAACCCTTATTGA
51171854 AAAACCTTAAA-CCTTATT-A
1 AAAACCTTAAACCCTTATTGA
51171873 AAAACCTTAA
1 AAAACCTTAA
51171883 TATTATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 11 0.41
20 6 0.22
21 10 0.37
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.28
Consensus pattern (21 bp):
AAAACCTTAAACCCTTATTGA
Found at i:51175951 original size:14 final size:14
Alignment explanation
Indices: 51175932--51175984 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
51175922 TTCAATTTGA
51175932 TTTATTTTTTTATT
1 TTTATTTTTTTATT
**
51175946 TTTATTTAATTATT
1 TTTATTTTTTTATT
*
51175960 TTT-TATTTTCTATT
1 TTTAT-TTTTTTATT
51175974 CTTTATTTTTT
1 -TTTATTTTTT
51175985 GTGATTTGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
13 1 0.03
14 21 0.70
15 7 0.23
16 1 0.03
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTATTTTTTTATT
Found at i:51175983 original size:22 final size:20
Alignment explanation
Indices: 51175932--51175984 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
51175922 TTCAATTTGA
51175932 TTTATTTTTTTATTTTTATT
1 TTTATTTTTTTATTTTTATT
51175952 TAATTA-TTTTTTATTTTCTATT
1 T--TTATTTTTTTATTTT-TATT
51175974 CTTTATTTTTT
1 -TTTATTTTTT
51175985 GTGATTTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
20 1 0.04
21 14 0.50
22 12 0.43
23 1 0.04
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTATTTTTTTATTTTTATT
Found at i:51176741 original size:14 final size:14
Alignment explanation
Indices: 51176722--51176750 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
51176712 TAATAATTAT
51176722 AAAAAATTATAATA
1 AAAAAATTATAATA
51176736 AAAAAATTATAATA
1 AAAAAATTATAATA
51176750 A
1 A
51176751 GAGATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAAAATTATAATA
Found at i:51201825 original size:47 final size:45
Alignment explanation
Indices: 51201759--51201895 Score: 136
Period size: 47 Copynumber: 3.0 Consensus size: 45
51201749 ATCTCATAGT
* *
51201759 CGATGCATGTCCCAGACATGTCTTACACTAGCAGT-TGCCTCAA-TG-C
1 CGATGCATGTCCCAAACATGTCTTACACTAGC--TCT-CAT-AAGTGTC
*
51201805 CGATGCCATGTCCCAAACATGGCCTTACACTAGCTCTCATAATGTGTC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATAA-GTGTC
* * *
51201853 CGATGCATGTCCCAAACATATCTTACACTAGCTCACACAAGTG
1 CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAAGTG
51201896 ACTCCAAACG
Statistics
Matches: 78, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
45 5 0.06
46 25 0.32
47 30 0.38
48 18 0.23
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (45 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAAGTGTC
Found at i:51207217 original size:19 final size:17
Alignment explanation
Indices: 51207172--51207208 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
51207162 AATTTGTTAT
*
51207172 TACGGAAATATATTCGA
1 TACGAAAATATATTCGA
*
51207189 TACGAAAATATATTTGA
1 TACGAAAATATATTCGA
51207206 TAC
1 TAC
51207209 TTGAGAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (17 bp):
TACGAAAATATATTCGA
Found at i:51209250 original size:39 final size:39
Alignment explanation
Indices: 51209207--51209322 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
51209197 CTGGACATAT
* * *
51209207 TTCCAGCACGTAGCCTGCGGACCTTAAGTTCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
51209246 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
51209285 TTCCAGCACATAGCCCGCGGACCCTAAGTCCGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
51209323 CATCACTGAA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:51216552 original size:93 final size:94
Alignment explanation
Indices: 51216341--51216609 Score: 319
Period size: 94 Copynumber: 2.8 Consensus size: 94
51216331 TGATATGTGT
*
51216341 GCTAGTGTAAGACATGTCTGAGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGACATGTCT
* **
51216406 GGGACATGCATCGGCTTCGAGATATTTAA
66 GGGACATGCATCGGCCTCGAGATATACAA
* * * *
51216435 GCCAGTGTAAGACATGTCTTGGACATGCATCAGCCGCAGTATGAGAGCTAGTGTAAGACAT-TCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGACATGTCT
*
51216499 GGGCCATGCATCGGCCTC-ACGATATACAA
66 GGGACATGCATCGGCCTCGA-GATATACAA
* ** * **
51216528 GCTAGTGTAAGACCTGTCTGGGACATGGCATGGGCCTCACTA-TATGAAAGGTAGTGTAAGATCA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAG-C-CAC-AGTATGAGAGCCAGTGTAAGA-CA
51216592 TGTCTGGGACATGGCATC
61 TGTCTGGGACAT-GCATC
51216610 AGCATCTTAA
Statistics
Matches: 149, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
92 1 0.01
93 49 0.33
94 61 0.41
95 1 0.01
96 19 0.13
97 4 0.03
98 9 0.06
99 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGACATGTCT
GGGACATGCATCGGCCTCGAGATATACAA
Found at i:51216584 original size:49 final size:49
Alignment explanation
Indices: 51216341--51216609 Score: 272
Period size: 46 Copynumber: 5.7 Consensus size: 49
51216331 TGATATGTGT
* * * *
51216341 GCTAGTGTAAGACATGTCTGAGACAT-GCATCAGCCACA-G-TATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCACGATATGAAA
* * **
51216387 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCTTCGA-GATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTC-ACGATATGAAA
* * * * *
51216435 GCCAGTGTAAGACATGTCTTGGACAT-GCATCAGCCGCA-G-TATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCACGATATGAAA
*
51216481 GCTAGTGTAAGACAT-TCTGGGCCAT-GCATCGGCCTCACGATAT-ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCACGATATGA-AA
* * *
51216528 GCTAGTGTAAGACCTGTCTGGGACATGGCATGGGCCTCACTATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCACGATATGAAA
*
51216577 GGTAGTGTAAGATCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATC
51216610 AGCATCTTAA
Statistics
Matches: 186, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
45 18 0.10
46 52 0.28
47 22 0.12
48 46 0.25
49 29 0.16
50 19 0.10
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCACGATATGAAA
Found at i:51224036 original size:48 final size:46
Alignment explanation
Indices: 51223924--51224048 Score: 153
Period size: 48 Copynumber: 2.7 Consensus size: 46
51223914 TATGTGTGCT
** *
51223924 AGTGTAAGACATGTCTAGGACATGCATCAGCCACAGTATGAGAGGC
1 AGTGTAAGACATGTCTAGGACATGCATTGGCCACAGTATGAGAGCC
* * *
51223970 AGTGTAAGACATTTCTAGGACATGCATTGGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATTGGCCAC-AG-TA-TGAGAGCC
*
51224018 AGTGTAAAACATGTCTAGGACATGCATTGGC
1 AGTGTAAGACATGTCTAGGACATGCATTGGC
51224049 ATTGAGACGA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 30 0.44
47 2 0.03
48 34 0.50
49 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATTGGCCACAGTATGAGAGCC
Found at i:51224211 original size:49 final size:49
Alignment explanation
Indices: 51224155--51224282 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
51224145 TGTTGTGTGT
* * *
51224155 CAGTGTAAGACCTATCTAGGACATGGCTTCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * * *
51224204 CAGTGTAAGACCTATTTGGGGCATGGCATCGGCCTCGCTATATGAAAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATAGATGAAAGC
*
51224253 CAGTGTAAGACCATGTCTGGGACATGGCAT
1 CAGTGTAAGACC-TATCTGGGACATGGCAT
51224283 TGGCATCTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.02
49 51 0.77
50 14 0.21
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:51225884 original size:40 final size:40
Alignment explanation
Indices: 51225847--51226072 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
51225837 GCTACTCGTT
* *
51225847 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
51225887 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
51225927 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
51225967 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * * *
51226007 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
51226048 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51226073 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 12 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51233858 original size:40 final size:40
Alignment explanation
Indices: 51233821--51234003 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
51233811 GCTACTCGTT
*
51233821 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
51233861 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
51233901 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
51233940 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
51233981 CAAA-GCCTTC-GGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
51234004 ACATCATTCA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
38 2 0.02
39 40 0.32
40 71 0.57
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51233932 original size:79 final size:81
Alignment explanation
Indices: 51233821--51234004 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
51233811 GCTACTCGTT
* *
51233821 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51233884 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
51233901 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
51233965 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
51233981 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGA
51234005 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
78 3 0.03
79 65 0.71
80 23 0.25
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:51238371 original size:43 final size:43
Alignment explanation
Indices: 51238319--51238428 Score: 139
Period size: 43 Copynumber: 2.6 Consensus size: 43
51238309 AGGATTACCC
* * *
51238319 ATATGTGATTACATGTAAGACCATGTCTTGGACATTGGCATCG
1 ATATATGATTACATGTAAGACCATGTCTGGGACAGTGGCATCG
* * * *
51238362 TTATATGATTTCATGTAAGACCCTGTCTGGGACAGTGGCTTCG
1 ATATATGATTACATGTAAGACCATGTCTGGGACAGTGGCATCG
* *
51238405 ATATGTGATAACATGTAAGACCAT
1 ATATATGATTACATGTAAGACCAT
51238429 ATCCGGGATA
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
ATATATGATTACATGTAAGACCATGTCTGGGACAGTGGCATCG
Found at i:51245203 original size:43 final size:43
Alignment explanation
Indices: 51245155--51245301 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 43
51245145 GATTACCGAG
*
51245155 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTA
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
* * *
51245198 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
* * * * * * * *
51245241 ATATGATTTCGTGTAAGACCCTATCTGGGACAGTGTCA-TCTA
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
*
51245283 TATGTGATAACATGTAAGA
1 -ATGTGATTACATGTAAGA
51245302 ACATATCCGG
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 1 0.01
43 85 0.99
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
Found at i:51250791 original size:34 final size:33
Alignment explanation
Indices: 51250731--51250801 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 33
51250721 GCATTTCTGT
51250731 TACTATTACAATAATAGGCTAAGGCCCACACTGA
1 TACTATTACAATAATAGGCTAAGGCCC-CACTGA
** * *
51250765 TACTATTACTGTAAT-GGTCTATGGCCCTACTGA
1 TACTATTACAATAATAGG-CTAAGGCCCCACTGA
51250798 TACT
1 TACT
51250802 GGACTATCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 11 0.34
34 21 0.66
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (33 bp):
TACTATTACAATAATAGGCTAAGGCCCCACTGA
Found at i:51253275 original size:78 final size:78
Alignment explanation
Indices: 51253141--51253296 Score: 276
Period size: 78 Copynumber: 2.0 Consensus size: 78
51253131 TAATTCTATT
*
51253141 CCCAAAATTTATTTTAAGTTATGGAAGCTAATTTTAAAAGTAATTGATTTACGAAAACGTGATGT
1 CCCAAAATTTATTTTAAGTTACGGAAGCTAATTTTAAAAGTAATTGATTTACGAAAACGTGATGT
*
51253206 CAAAAACAACTAA
66 CAAAAAAAACTAA
* *
51253219 CCCAAAATTTCTTTTAAGTTACGGAAGCTAATTTTAAAAGTAATTGATTTATGAAAACGTGATGT
1 CCCAAAATTTATTTTAAGTTACGGAAGCTAATTTTAAAAGTAATTGATTTACGAAAACGTGATGT
51253284 CAAAAAAAACTAA
66 CAAAAAAAACTAA
51253297 GTTGCGAAAC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.32
Consensus pattern (78 bp):
CCCAAAATTTATTTTAAGTTACGGAAGCTAATTTTAAAAGTAATTGATTTACGAAAACGTGATGT
CAAAAAAAACTAA
Found at i:51253756 original size:31 final size:33
Alignment explanation
Indices: 51253700--51253764 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 33
51253690 TTTGGGTCAC
* *
51253700 AACCTATAACAGAATCAATTGGGCCT-AGCCCA
1 AACCAATAACAGAATCAAGTGGGCCTAAGCCCA
*
51253732 AACCAATAACAGGA-CAAGTGGGCCTAAGCCCA
1 AACCAATAACAGAATCAAGTGGGCCTAAGCCCA
51253764 A
1 A
51253765 TACAGTGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 10 0.34
32 19 0.66
ACGTcount: A:0.40, C:0.28, G:0.18, T:0.14
Consensus pattern (33 bp):
AACCAATAACAGAATCAAGTGGGCCTAAGCCCA
Found at i:51254012 original size:32 final size:32
Alignment explanation
Indices: 51253967--51254049 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 32
51253957 CTCTAAGTCT
*
51253967 TCAGTAGCGGTATTATAATTGGCACAAAGCCA
1 TCAGTAACGGTATTATAATTGGCACAAAGCCA
* ** *
51253999 TCAGTAACTGTATTATGTTTGGCACATAGCCA
1 TCAGTAACGGTATTATAATTGGCACAAAGCCA
* *
51254031 TCAGCAACGGTAATATAAT
1 TCAGTAACGGTATTATAAT
51254050 CGACACAGAG
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (32 bp):
TCAGTAACGGTATTATAATTGGCACAAAGCCA
Found at i:51254553 original size:27 final size:27
Alignment explanation
Indices: 51254521--51254635 Score: 112
Period size: 27 Copynumber: 4.3 Consensus size: 27
51254511 CAAAACAATC
51254521 ATTTTACCTTAC-AGGAGTATTTCGATA
1 ATTTTACCTTACAAGG-GTATTTCGATA
51254548 ATTTTACAC-TACAAGGGTATTTCGGA-A
1 ATTTTAC-CTTACAAGGGTATTTC-GATA
* *
51254575 ATTTTTCATTACAAGGGTATTTCGATA
1 ATTTTACCTTACAAGGGTATTTCGATA
* * * *
51254602 ATTTTACAATT-CAAGGATATTTTGGTA
1 ATTTTAC-CTTACAAGGGTATTTCGATA
51254629 ATTTTAC
1 ATTTTAC
51254636 AAATAGAGGT
Statistics
Matches: 76, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
26 2 0.03
27 65 0.86
28 9 0.12
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (27 bp):
ATTTTACCTTACAAGGGTATTTCGATA
Found at i:51254579 original size:54 final size:54
Alignment explanation
Indices: 51254521--51254636 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
51254511 CAAAACAATC
* * *
51254521 ATTTTACCTTAC-AGGAGTATTTCGATAATTTTACACTACAAGGGTATTTCGGAA
1 ATTTTACATTACAAGG-GTATTTCGATAATTTTACAATACAAGGATATTTCGGAA
* * * *
51254575 ATTTTTCATTACAAGGGTATTTCGATAATTTTACAATTCAAGGATATTTTGGTA
1 ATTTTACATTACAAGGGTATTTCGATAATTTTACAATACAAGGATATTTCGGAA
51254629 ATTTTACA
1 ATTTTACA
51254637 AATAGAGGTC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 50 0.94
55 3 0.06
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (54 bp):
ATTTTACATTACAAGGGTATTTCGATAATTTTACAATACAAGGATATTTCGGAA
Found at i:51254636 original size:27 final size:27
Alignment explanation
Indices: 51254537--51254637 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
51254527 CCTTACAGGA
* * *
51254537 GTATTTCGATAATTTTACACTACAAGG
1 GTATTTCGGTAATTTTACAATTCAAGG
* *
51254564 GTATTTCGGAAATTTTTC-ATTACAAGG
1 GTATTTCGGTAATTTTACAATT-CAAGG
*
51254591 GTATTTCGATAATTTTACAATTCAAGG
1 GTATTTCGGTAATTTTACAATTCAAGG
* *
51254618 ATATTTTGGTAATTTTACAA
1 GTATTTCGGTAATTTTACAA
51254638 ATAGAGGTCT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
26 1 0.02
27 57 0.93
28 3 0.05
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.42
Consensus pattern (27 bp):
GTATTTCGGTAATTTTACAATTCAAGG
Found at i:51274871 original size:13 final size:13
Alignment explanation
Indices: 51274850--51274882 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
51274840 TGGGCTTCCT
51274850 CACACGGGTAAGC
1 CACACGGGTAAGC
*
51274863 CACATGGGTAAGC
1 CACACGGGTAAGC
51274876 CACACGG
1 CACACGG
51274883 CCGTGTCCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.30, T:0.09
Consensus pattern (13 bp):
CACACGGGTAAGC
Found at i:51283718 original size:54 final size:54
Alignment explanation
Indices: 51283566--51283722 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
51283556 GTGTTGGTAG
* * * *
51283566 ACTATCCCACGTTTATTGTCCCAGTGGATTATCCCATGTCTA-CTGTCCTAGCAG
1 ACTAACCCACGTTTATTGTCACAATGGATTATCCCATGTCTATC-GTCCTAGCAA
* ** * * * * * *
51283620 ACTAACCCACGTTTATTTTCATGACGGACTATCCCGTGTTTATCGTCTTGGCAA
1 ACTAACCCACGTTTATTGTCACAATGGATTATCCCATGTCTATCGTCCTAGCAA
* *
51283674 ACTAACCCACATTTATTGTCACAATGGATTATCCCATGCCTATCGTCCT
1 ACTAACCCACGTTTATTGTCACAATGGATTATCCCATGTCTATCGTCCT
51283723 GGTGGACCGT
Statistics
Matches: 79, Mismatches: 23, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
54 78 0.99
55 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.34
Consensus pattern (54 bp):
ACTAACCCACGTTTATTGTCACAATGGATTATCCCATGTCTATCGTCCTAGCAA
Found at i:51290045 original size:57 final size:58
Alignment explanation
Indices: 51289964--51290074 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 58
51289954 AAATCCACAT
* *
51289964 ACCTCTATCTGGCCCATTAAGCCC-AATCATACTCATATGGCCTATTAGGCCCAAACC
1 ACCTCTATATGGCCCATTAAGCCCAAATCACACTCATATGGCCTATTAGGCCCAAACC
* * * * * *
51290021 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCTTGTTAGGCCCA
1 ACCTCTATATGGCCCATTAAGCCCAAATCACACTCATATGGCCTATTAGGCCCA
51290075 GTCACATCCA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 21 0.47
58 24 0.53
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (58 bp):
ACCTCTATATGGCCCATTAAGCCCAAATCACACTCATATGGCCTATTAGGCCCAAACC
Found at i:51290069 original size:29 final size:29
Alignment explanation
Indices: 51289998--51290074 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 29
51289988 AATCATACTC
*
51289998 ATATGGCCTATTAGGCCCAAACCACCTGT
1 ATATGGCCTATTAGGCCCAAACCACATGT
* * *
51290027 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCTATTAGGCCCAAACCACATGT
* *
51290056 ATATGGCTTGTTAGGCCCA
1 ATATGGCCTATTAGGCCCA
51290075 GTCACATCCA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (29 bp):
ATATGGCCTATTAGGCCCAAACCACATGT
Found at i:51290168 original size:17 final size:18
Alignment explanation
Indices: 51290146--51290179 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51290136 TGCCTATTAT
51290146 GGGCCCAAC-AGCCCATC
1 GGGCCCAACTAGCCCATC
*
51290163 GGGCCCATCTAGCCCAT
1 GGGCCCAACTAGCCCAT
51290180 TCTGGCTCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.44, G:0.24, T:0.12
Consensus pattern (18 bp):
GGGCCCAACTAGCCCATC
Found at i:51290311 original size:8 final size:8
Alignment explanation
Indices: 51290298--51290343 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
51290288 GTAGCTAAAC
*
51290298 TTTCGACT
1 TTTCGACA
51290306 TTTCGACA
1 TTTCGACA
*
51290314 TTTAGACA
1 TTTCGACA
*
51290322 TTTCGGCA
1 TTTCGACA
*
51290330 TTTCGGCA
1 TTTCGACA
51290338 TTTCGA
1 TTTCGA
51290344 GTTTTACCGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.41
Consensus pattern (8 bp):
TTTCGACA
Found at i:51297359 original size:29 final size:29
Alignment explanation
Indices: 51297293--51297400 Score: 110
Period size: 29 Copynumber: 3.8 Consensus size: 29
51297283 TCCAAATACC
* * * *
51297293 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAACCACA
* * * *
51297321 TTTATATGGCCTATTGGGCCCAAACCACC
1 TGTATATGGCCCATTAGGCCCAAACCACA
*
51297350 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAACCACA
* *
51297379 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
51297401 GCCACATTCA
Statistics
Matches: 64, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 16 0.25
29 48 0.75
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAACCACA
Found at i:51302713 original size:42 final size:42
Alignment explanation
Indices: 51302654--51302820 Score: 201
Period size: 42 Copynumber: 4.0 Consensus size: 42
51302644 GGAAATATTT
*
51302654 GAGATAGCTTCAGCTATGCATTAGCACTTAGTGTGCGAGATC
1 GAGATAGCTTCAGCTATGCATTGGCACTTAGTGTGCGAGATC
* *
51302696 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTTCGAGATC
1 GAGATAGCTTCAGCTATGCATTGGCACTTAGTGTGCGAGATC
* * * *
51302738 AAGATAGCTTC-GACTATGCATTGGCACTTAGTGTGTGTGATT
1 GAGATAGCTTCAG-CTATGCATTGGCACTTAGTGTGCGAGATC
* *** * *
51302780 GAGTTAGCTTCAGCTACATATTGGCACTTAGTTTACGAGAT
1 GAGATAGCTTCAGCTATGCATTGGCACTTAGTGTGCGAGAT
51302821 TCCCGAGTAA
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
41 1 0.01
42 104 0.98
43 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
GAGATAGCTTCAGCTATGCATTGGCACTTAGTGTGCGAGATC
Found at i:51302936 original size:32 final size:32
Alignment explanation
Indices: 51302891--51302954 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
51302881 ATGAGATTGG
* *
51302891 TACGAGATTGTACAGGTATGTACGAAAATTCA
1 TACGAGATGGTACAAGTATGTACGAAAATTCA
51302923 TACGAGATGGTACAAGTATGTACGAAAATTCA
1 TACGAGATGGTACAAGTATGTACGAAAATTCA
51302955 ATTGAGTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (32 bp):
TACGAGATGGTACAAGTATGTACGAAAATTCA
Found at i:51304511 original size:24 final size:24
Alignment explanation
Indices: 51304483--51304580 Score: 115
Period size: 24 Copynumber: 4.0 Consensus size: 24
51304473 AAGGCTGACA
*
51304483 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGAAGCTGATAAG
* *
51304507 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGAAGCTGATAAG
* * * * *
51304531 GGAGAGGTTTTAGAATCTAATAAA
1 GGAGAAGATTTAGAAGCTGATAAG
51304555 GGAGAAGATTTAGAAGCTGATCAAG
1 GGAGAAGATTTAGAAGCTGAT-AAG
51304580 G
1 G
51304581 AGCAGGAGTT
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
24 59 0.95
25 3 0.05
ACGTcount: A:0.38, C:0.05, G:0.35, T:0.22
Consensus pattern (24 bp):
GGAGAAGATTTAGAAGCTGATAAG
Found at i:51312450 original size:24 final size:24
Alignment explanation
Indices: 51312417--51312514 Score: 133
Period size: 24 Copynumber: 4.0 Consensus size: 24
51312407 AAGGCTATCA
*
51312417 GGAGAAGATTTAGGAGCTGTTAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
51312441 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
51312465 GGAGAGGATTTAGGAGATGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
51312489 GGAGAAGATTTAGAAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
51312514 G
1 G
51312515 AGCAGGAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
24 62 0.95
25 3 0.05
ACGTcount: A:0.37, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:51318524 original size:47 final size:47
Alignment explanation
Indices: 51318459--51318577 Score: 229
Period size: 47 Copynumber: 2.5 Consensus size: 47
51318449 CGAATGTCCA
51318459 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
*
51318506 AACTCGTTGAGTTGAGTCCAAGTTCGTGAAATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
51318553 AACTCGTTGAGTTGAGTCCGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTC
51318578 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
Found at i:51320795 original size:46 final size:46
Alignment explanation
Indices: 51320723--51320944 Score: 290
Period size: 46 Copynumber: 4.8 Consensus size: 46
51320713 TGTAACCTGC
* *
51320723 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCAT
* *
51320769 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
51320815 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
51320865 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
51320908 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51320945 TGCCCAAATA
Statistics
Matches: 152, Mismatches: 16, Indels: 16
0.83 0.09 0.09
Matches are distributed among these distances:
43 6 0.04
44 2 0.01
45 4 0.03
46 102 0.67
47 28 0.18
48 2 0.01
49 2 0.01
50 6 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:51320902 original size:93 final size:94
Alignment explanation
Indices: 51320723--51320948 Score: 329
Period size: 93 Copynumber: 2.4 Consensus size: 94
51320713 TGTAACCTGC
* * * *
51320723 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GG--GCGTTTGCATCCATGAGTGAACTCAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGATGCCTTTACATCCATCAGCGAACTCAG
51320785 ACTCAACTCAACGAGTTCGGACATTTGCAT
65 ACTCAACTCAACGAGTTCGGACATTTGCAT
*
51320815 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-CGAACTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCT--TTACATCCATCAGCGAACTCA
*
51320877 GACTCAACTCAACGAGTTTGGACATTTGCAT
64 GACTCAACTCAACGAGTTCGGACATTTGCAT
51320908 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
51320949 CAAATATCCC
Statistics
Matches: 123, Mismatches: 6, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
91 2 0.02
92 33 0.27
93 77 0.63
94 5 0.04
95 1 0.01
96 5 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (94 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTTTACATCCATCAGCGAACTCAGA
CTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:51323374 original size:30 final size:30
Alignment explanation
Indices: 51323330--51323418 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
51323320 CAAAGATAAC
51323330 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* * *
51323359 GAGAAACCCAGAATAAAGAGATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
51323389 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
51323419 CGATACTATG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 9 0.19
30 37 0.77
31 2 0.04
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:51323386 original size:15 final size:15
Alignment explanation
Indices: 51323330--51323409 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
51323320 CAAAGATAAC
*
51323330 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
51323344 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
51323359 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
*
51323374 AAGAGATCCAGAATA
1 AAGAAATCCAGAATA
* *
51323389 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
51323404 AAGAAA
1 AAGAAA
51323410 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.19, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:51323418 original size:15 final size:15
Alignment explanation
Indices: 51323341--51323418 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
51323331 AGAAAACCGA
51323341 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
51323356 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
*
51323370 AATAAAGAGATCC-AG
1 -ATAAAGAAATCCAAG
* *
51323385 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
51323401 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51323416 ATA
1 ATA
51323419 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51326403 original size:46 final size:46
Alignment explanation
Indices: 51326331--51326552 Score: 297
Period size: 46 Copynumber: 4.8 Consensus size: 46
51326321 TGTAACCCGG
* * * *
51326331 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
51326377 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
51326423 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
51326473 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
51326516 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51326553 TGCCCAAAAT
Statistics
Matches: 154, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
43 6 0.04
44 2 0.01
45 2 0.01
46 105 0.68
47 29 0.19
48 2 0.01
49 2 0.01
50 6 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:51326509 original size:93 final size:95
Alignment explanation
Indices: 51326331--51326556 Score: 340
Period size: 93 Copynumber: 2.4 Consensus size: 95
51326321 TGTAACCCGG
* * * *
51326331 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGG--G-CGTTCGCATCCATGAGTGAACTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCGTTCACATCCATCAGCGAACTCGG
51326393 ACTCAACTCAACGAGCTCGGACATTTGCAT
66 ACTCAACTCAACGAGCTCGGACATTTGCAT
51326423 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC--GTTCACATCCATCAGCGAACTC
*
51326484 GGACTCAACTCAACGAGTTCGGACATTTGCAT
64 GGACTCAACTCAACGAGCTCGGACATTTGCAT
51326516 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
51326557 CAAAATCCCA
Statistics
Matches: 124, Mismatches: 5, Indels: 9
0.90 0.04 0.07
Matches are distributed among these distances:
92 35 0.28
93 78 0.63
94 3 0.02
95 2 0.02
96 3 0.02
97 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (95 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCGTTCACATCCATCAGCGAACTCGG
ACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:51328976 original size:30 final size:30
Alignment explanation
Indices: 51328932--51329020 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
51328922 CAAAGATAAC
51328932 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* * *
51328961 GAGAAACCCAGAATAAAGAGATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
51328991 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
51329021 CGATACTATG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 9 0.19
30 37 0.77
31 2 0.04
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:51328988 original size:15 final size:15
Alignment explanation
Indices: 51328932--51329011 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
51328922 CAAAGATAAC
*
51328932 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
51328946 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
51328961 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
*
51328976 AAGAGATCCAGAATA
1 AAGAAATCCAGAATA
* *
51328991 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
51329006 AAGAAA
1 AAGAAA
51329012 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.19, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:51329020 original size:15 final size:15
Alignment explanation
Indices: 51328943--51329020 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
51328933 AGAAAACCGA
51328943 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
51328958 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
*
51328972 AATAAAGAGATCC-AG
1 -ATAAAGAAATCCAAG
* *
51328987 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
51329003 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51329018 ATA
1 ATA
51329021 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51332007 original size:46 final size:46
Alignment explanation
Indices: 51331935--51332156 Score: 297
Period size: 46 Copynumber: 4.8 Consensus size: 46
51331925 TGTAACCCGG
* * * *
51331935 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
51331981 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
51332027 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
51332077 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
51332120 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51332157 TGCCCAAAAT
Statistics
Matches: 154, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
43 6 0.04
44 2 0.01
45 2 0.01
46 105 0.68
47 29 0.19
48 2 0.01
49 2 0.01
50 6 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:51332113 original size:93 final size:95
Alignment explanation
Indices: 51331935--51332160 Score: 340
Period size: 93 Copynumber: 2.4 Consensus size: 95
51331925 TGTAACCCGG
* * * *
51331935 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGG--G-CGTTCGCATCCATGAGTGAACTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCGTTCACATCCATCAGCGAACTCGG
51331997 ACTCAACTCAACGAGCTCGGACATTTGCAT
66 ACTCAACTCAACGAGCTCGGACATTTGCAT
51332027 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC--GTTCACATCCATCAGCGAACTC
*
51332088 GGACTCAACTCAACGAGTTCGGACATTTGCAT
64 GGACTCAACTCAACGAGCTCGGACATTTGCAT
51332120 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
51332161 CAAAATCCCA
Statistics
Matches: 124, Mismatches: 5, Indels: 9
0.90 0.04 0.07
Matches are distributed among these distances:
92 35 0.28
93 78 0.63
94 3 0.02
95 2 0.02
96 3 0.02
97 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (95 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCGTTCACATCCATCAGCGAACTCGG
ACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:51336505 original size:40 final size:40
Alignment explanation
Indices: 51336450--51336710 Score: 375
Period size: 40 Copynumber: 6.6 Consensus size: 40
51336440 TATTCGAATG
* *
51336450 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
51336490 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
51336530 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
51336570 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * * *
51336609 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTTCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
51336649 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
51336689 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
51336711 TACTTGGGTT
Statistics
Matches: 200, Mismatches: 19, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
39 52 0.26
40 146 0.73
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:51336618 original size:79 final size:80
Alignment explanation
Indices: 51336450--51336710 Score: 375
Period size: 79 Copynumber: 3.3 Consensus size: 80
51336440 TATTCGAATG
* * *
51336450 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
*
51336515 TTTGTGCTATTGATT
66 TTTGTGCTAGTGATT
51336530 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGATTATATCC-GGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
51336594 TTTGTGCTAGTGATT
66 TTTGTGCTAGTGATT
* * * * * *
51336609 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTTCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
* *
51336674 TTTGTGCGAGTTG-CT
66 TTTGTGCTAG-TGATT
*
51336689 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
51336711 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
79 87 0.53
80 76 0.46
81 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGATT
Found at i:51336671 original size:119 final size:119
Alignment explanation
Indices: 51336450--51336710 Score: 398
Period size: 119 Copynumber: 2.2 Consensus size: 119
51336440 TATTCGAATG
*
51336450 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCC-GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
* * * *
51336515 TTTGTGCTATTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTACTAG-TGATT
65 TTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG-CT
* * *
51336570 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCTGAAGGCTT
1 ATATCCGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCAT
* *
51336635 TTGTTCTATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
66 TTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCT
*
51336689 ATATCCGGCTAAATCCCGAAGG
1 ATATCCGGCTAAGTCCCGAAGG
51336711 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
119 121 0.94
120 8 0.06
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (119 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCT
Found at i:51338436 original size:31 final size:31
Alignment explanation
Indices: 51338396--51338461 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
51338386 TGGAAGTGTG
*
51338396 TGAG-AATGATTATTGATTAGAGTTTAACCT
1 TGAGTAATGATTACTGATTAGAGTTTAACCT
51338426 TGAGTAATGATTACTGATTAGAGTTTAACCT
1 TGAGTAATGATTACTGATTAGAGTTTAACCT
51338457 TGAGT
1 TGAGT
51338462 GGCATTTGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 4 0.12
31 30 0.88
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (31 bp):
TGAGTAATGATTACTGATTAGAGTTTAACCT
Found at i:51343873 original size:16 final size:16
Alignment explanation
Indices: 51343854--51343885 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51343844 GTCAAAAAAT
51343854 CGAAATGCCGAAAAGC
1 CGAAATGCCGAAAAGC
51343870 CGAAATGCCGAAAAGC
1 CGAAATGCCGAAAAGC
51343886 TGGCATTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.25, T:0.06
Consensus pattern (16 bp):
CGAAATGCCGAAAAGC
Found at i:51344317 original size:28 final size:26
Alignment explanation
Indices: 51344270--51344330 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
51344260 TGGAGGAAGC
* *
51344270 GTTCTGGTGGCACTGCCACAAATATTT
1 GTTCTGGTGACACTGCCAC-AATATCT
* *
51344297 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGACACTGCCACAATATCT
51344324 GTTCTGG
1 GTTCTGG
51344331 CAGCCATGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 5 0.17
27 10 0.34
28 14 0.48
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGACACTGCCACAATATCT
Found at i:51345553 original size:62 final size:62
Alignment explanation
Indices: 51345456--51345581 Score: 243
Period size: 62 Copynumber: 2.0 Consensus size: 62
51345446 TTAATAGAGA
*
51345456 GTCACTTAGGTGGCTACTGTGGAGTTCCATAGCTCGAGCTCAGCAACCAGATCAGGAATGGC
1 GTCACTTAGGTGGCTACTGTGGAATTCCATAGCTCGAGCTCAGCAACCAGATCAGGAATGGC
51345518 GTCACTTAGGTGGCTACTGTGGAATTCCATAGCTCGAGCTCAGCAACCAGATCAGGAATGGC
1 GTCACTTAGGTGGCTACTGTGGAATTCCATAGCTCGAGCTCAGCAACCAGATCAGGAATGGC
51345580 GT
1 GT
51345582 GTTACATGTT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.23
Consensus pattern (62 bp):
GTCACTTAGGTGGCTACTGTGGAATTCCATAGCTCGAGCTCAGCAACCAGATCAGGAATGGC
Found at i:51354254 original size:20 final size:20
Alignment explanation
Indices: 51354204--51354254 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
51354194 TCCCTATTCA
* * *
51354204 CACTACGGTGCCCTTTTTTG
1 CACTTCGGTGCCCTTATCTG
*
51354224 CACATT-TGTGCCCTTATCTG
1 CAC-TTCGGTGCCCTTATCTG
51354244 CACTTCGGTGC
1 CACTTCGGTGC
51354255 TCTTGTTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
19 2 0.08
20 21 0.88
21 1 0.04
ACGTcount: A:0.12, C:0.31, G:0.20, T:0.37
Consensus pattern (20 bp):
CACTTCGGTGCCCTTATCTG
Found at i:51357499 original size:47 final size:47
Alignment explanation
Indices: 51357443--51357714 Score: 211
Period size: 46 Copynumber: 5.8 Consensus size: 47
51357433 AGGGTATGAT
* *
51357443 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCTCAA
* * * * * * *
51357490 GTCGATGCCATGTCCTAGACACGGTCTTACACTGACT-ATTGTTATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-T-CTCTC-AA
* * * *
51357539 GCCGACGCCATGTCCAAGACATGGTCTTACACTGACACA--TCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCTCA-A
* * * * *
51357585 GCCGATG-CATGTCCCTGACAT-GTCTTATACTGGCTTAACT-TACGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCT-C-AA
* * * *
51357631 GCCAAT-ACATGTCCCAGACAT-GTCTTACACTAGATC-TCCTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CTCTCAA
51357676 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
51357715 TCATAATGTG
Statistics
Matches: 175, Mismatches: 35, Indels: 29
0.73 0.15 0.12
Matches are distributed among these distances:
44 12 0.07
45 15 0.09
46 49 0.28
47 49 0.28
48 16 0.09
49 33 0.19
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCTCAA
Found at i:51368350 original size:24 final size:23
Alignment explanation
Indices: 51368322--51368433 Score: 104
Period size: 24 Copynumber: 4.8 Consensus size: 23
51368312 GCTTTTCATG
51368322 AGCTGATAATAGTAAGCTCTATTA
1 AGCTGA-AATAGTAAGCTCTATTA
* *
51368346 AGCTGAAAATGGTAAGCTCTATTG
1 AGCTG-AAATAGTAAGCTCTATTA
* *
51368370 AGCTG-AACAGTAAGCTCTTTTGA
1 AGCTGAAATAGTAAGCTCTATT-A
* *
51368393 A-CTG-AATCAGCAAGCTCCATTA
1 AGCTGAAAT-AGTAAGCTCTATTA
*
51368415 AGCTGAAACAGTAAGCTCT
1 AGCTGAAATAGTAAGCTCT
51368434 TACGAGCTAT
Statistics
Matches: 70, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
22 20 0.29
23 22 0.31
24 27 0.39
25 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (23 bp):
AGCTGAAATAGTAAGCTCTATTA
Found at i:51368420 original size:23 final size:22
Alignment explanation
Indices: 51368332--51368433 Score: 107
Period size: 23 Copynumber: 4.5 Consensus size: 22
51368322 AGCTGATAAT
*
51368332 AGTAAGCTCTATTAAGCTGAAA
1 AGTAAGCTCTATTAAGCTGAAC
*
51368354 ATGGTAAGCTCTATTGAGCTGAAC
1 A--GTAAGCTCTATTAAGCTGAAC
*
51368378 AGTAAGCTCTTTTGAA-CTGAATC
1 AGTAAGCTCTATT-AAGCTGAA-C
* *
51368401 AGCAAGCTCCATTAAGCTGAAAC
1 AGTAAGCTCTATTAAGCTG-AAC
51368424 AGTAAGCTCT
1 AGTAAGCTCT
51368434 TACGAGCTAT
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
22 19 0.29
23 24 0.37
24 22 0.34
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (22 bp):
AGTAAGCTCTATTAAGCTGAAC
Found at i:51368441 original size:23 final size:22
Alignment explanation
Indices: 51368321--51368441 Score: 70
Period size: 23 Copynumber: 5.2 Consensus size: 22
51368311 AGCTTTTCAT
*
51368321 GAGCTGATAATAGTAAGCTCTATTA
1 GAGCTGA-AACAGTAAGCTC--TTA
*
51368346 -AGCTGAAA-ATGGTAAGCTCTATT
1 GAGCTGAAACA--GTAAGCTCT-TA
*
51368369 GAGCTG-AACAGTAAGCTCTTTT
1 GAGCTGAAACAGTAAGCTC-TTA
* * *
51368391 GAACTGAATCAGCAAGCTCCATTA
1 GAGCTGAAACAGTAAGCT-C-TTA
51368415 -AGCTGAAACAGTAAGCTCTTA
1 GAGCTGAAACAGTAAGCTCTTA
51368436 CGAGCT
1 -GAGCT
51368442 ATGGTGAGTC
Statistics
Matches: 77, Mismatches: 9, Indels: 22
0.71 0.08 0.20
Matches are distributed among these distances:
21 3 0.04
22 18 0.23
23 33 0.43
24 23 0.30
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (22 bp):
GAGCTGAAACAGTAAGCTCTTA
Found at i:51371833 original size:46 final size:46
Alignment explanation
Indices: 51371732--51371819 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
51371722 TGTAACCCGC
* * *
51371732 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
51371778 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
51371820 AACCATCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:51374233 original size:30 final size:30
Alignment explanation
Indices: 51374189--51374277 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
51374179 CAAAGATAAC
*
51374189 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
51374218 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
51374248 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
51374278 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:51374237 original size:15 final size:14
Alignment explanation
Indices: 51374189--51374271 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
51374179 CAAAGATAAC
*
51374189 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
51374203 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
51374218 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
51374233 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
51374248 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
51374263 AAGAAACCC
1 AAGAAACCC
51374272 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:51374277 original size:15 final size:15
Alignment explanation
Indices: 51374200--51374277 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
51374190 AGAAAACCGA
51374200 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
51374215 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
51374229 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
51374244 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
51374260 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51374275 ATA
1 ATA
51374278 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51377291 original size:46 final size:46
Alignment explanation
Indices: 51377190--51377277 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
51377180 TGTAACCCGC
* * * *
51377190 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGCTCCCAT
* *
51377236 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGCTC
51377278 AACCATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGCTCCCAT
Found at i:51382022 original size:50 final size:50
Alignment explanation
Indices: 51381904--51382337 Score: 325
Period size: 50 Copynumber: 8.6 Consensus size: 50
51381894 ATTTGGTATG
* * * ** *
51381904 CATAGTAGCCTACACTTAGTACTACACATGCGACC-AAAAAT-TCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCT-GATACA
* * *
51381953 CGTAGTAGCCAGCACTTAGTACTACACACGTGACCTAACTATCTGATACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACA
* * * * * * *
51382003 CATAGTAGCCTACACTTAGTACTGCACACGTGATCGAAGT-TGTCGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCT-GA-TACA
* * *
51382054 CATAGACGTAGCTTGCACTTAGTACTACACATGTGACCTAACTATCTGGTACA
1 CAT--A-GTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACA
* * * *
51382107 CGTAGTAGCCTACACTTAGTACTACACACGTGATCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACA
* * * * * * * * * * **
51382157 CGTAATAGCCTGCACTTAGTACTACATACATGATCGAAGTTGTCGGGTATG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CTATCTGATACA
* * * * *
51382208 CAGAGTAACCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACA
** * * * * *
51382258 TGTAGTAGCTTGCACTTAGTACTACACATGTGACCTAAAACCATCTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACTATCTGATACA
* *
51382310 CATAGCAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
51382338 TGTGTTCTGA
Statistics
Matches: 298, Mismatches: 76, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
49 32 0.11
50 153 0.51
51 42 0.14
52 33 0.11
53 6 0.02
54 30 0.10
55 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACA
Found at i:51382126 original size:154 final size:151
Alignment explanation
Indices: 51381907--51382337 Score: 526
Period size: 154 Copynumber: 2.8 Consensus size: 151
51381897 TGGTATGCAT
* * **
51381907 AGTAGCCTACACTTAGTACTACACATGCGACC-AAAAAT-TCGGTACACGTAGTAGCC-AGCACT
1 AGTAACCTGCACTTAGTACTACACATGCGACCTAACTATCT-GGTACACGTAGTAGCCTA-CACT
* * * * *
51381969 TAGTACTACACACGTGACCTAACTATCTGATACGCATAGTAGCCTACACTTAGTACTGCACACGT
64 TAGTACTACACACGTGACCTAACCATCTGATACACATAATAGCCTACACTTAGTACTACACACAT
51382034 GATCGAAGTTGTCGAGTACGCATAG
129 GATCGAAGTTGTCGAGTACGC--AG
* * *
51382059 ACGTAGCTTGCACTTAGTACTACACATGTGACCTAACTATCTGGTACACGTAGTAGCCTACACTT
1 A-GTAACCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTACACTT
* * * *
51382124 AGTACTACACACGTGATCTAACCATCTGATACACGTAATAGCCTGCACTTAGTACTACATACATG
65 AGTACTACACACGTGACCTAACCATCTGATACACATAATAGCCTACACTTAGTACTACACACATG
* *
51382189 ATCGAAGTTGTCGGGTATGCAG
130 ATCGAAGTTGTCGAGTACGCAG
* * *
51382211 AGTAACCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACATGTAGTAGCTTGCACTTA
1 AGTAACCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTACACTTA
* * * ** * *
51382276 GTACTACACATGTGACCTAAAACCATCTTAAACACATAGCAGCCTGCACATAGTACTACACA
66 GTACTACACACGTGACCT--AACCATCTGATACACATAATAGCCTACACTTAGTACTACACA
51382338 TGTGTTCTGA
Statistics
Matches: 242, Mismatches: 31, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
151 74 0.31
152 4 0.02
153 63 0.26
154 99 0.41
155 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (151 bp):
AGTAACCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTACACTTA
GTACTACACACGTGACCTAACCATCTGATACACATAATAGCCTACACTTAGTACTACACACATGA
TCGAAGTTGTCGAGTACGCAG
Found at i:51383577 original size:22 final size:22
Alignment explanation
Indices: 51383552--51383618 Score: 125
Period size: 22 Copynumber: 3.0 Consensus size: 22
51383542 TCCATTTTTG
51383552 TCCACCAACTTAACCAATGGTA
1 TCCACCAACTTAACCAATGGTA
51383574 TCCACCAACTTAACCAATGGTA
1 TCCACCAACTTAACCAATGGTA
*
51383596 TCCACCAGCTTAACCAATGGTA
1 TCCACCAACTTAACCAATGGTA
51383618 T
1 T
51383619 AATTACCATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.34, C:0.31, G:0.10, T:0.24
Consensus pattern (22 bp):
TCCACCAACTTAACCAATGGTA
Found at i:51405474 original size:17 final size:17
Alignment explanation
Indices: 51405452--51405485 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51405442 TTTAGGATAA
*
51405452 ATTTTGATTGATTTATC
1 ATTTTGATTGATATATC
51405469 ATTTTGATTGATATATC
1 ATTTTGATTGATATATC
51405486 TTGAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (17 bp):
ATTTTGATTGATATATC
Found at i:51409005 original size:24 final size:24
Alignment explanation
Indices: 51408965--51409038 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
51408955 CTGATGAGCT
*
51408965 GAATTAGTAAGCCCATACGAGCTGA
1 GAATT-GTAAGCTCATACGAGCTGA
51408990 GAATTGTAAGCTCATACGAGCTGA
1 GAATTGTAAGCTCATACGAGCTGA
* * *
51409014 TATATCGATAAGCTCATATGAGCTG
1 GA-ATTG-TAAGCTCATACGAGCTG
51409039 TGGTGAGTCC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 19 0.44
25 8 0.19
26 16 0.37
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26
Consensus pattern (24 bp):
GAATTGTAAGCTCATACGAGCTGA
Found at i:51414618 original size:49 final size:49
Alignment explanation
Indices: 51414546--51414903 Score: 602
Period size: 47 Copynumber: 7.3 Consensus size: 49
51414536 CCCTTTGGGA
51414546 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51414593 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51414642 CTTATCTC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
51414689 CTTATCAC--GCATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51414736 CTTATCACGTATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51414787 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51414836 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51414887 CTTATCACATATATATA
1 CTTATCACATATATATA
51414904 TTATCACATA
Statistics
Matches: 295, Mismatches: 8, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
47 100 0.34
48 1 0.00
49 100 0.34
51 94 0.32
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51414775 original size:51 final size:51
Alignment explanation
Indices: 51414557--51415022 Score: 650
Period size: 51 Copynumber: 9.1 Consensus size: 51
51414547 TTATCACATT
*
51414557 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
51414606 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--C-T-CATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
**
51414653 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----GCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
51414700 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51414751 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51414800 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51414851 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
51414902 TATTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TA-TA-CAC-----T-T-T-CACATT--CAT----CACATCGGCCATTAGGCCTTATCACATATA
51414967 TA
50 TA
51414969 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51415020 TAT
1 TAT
51415023 TATCACATAT
Statistics
Matches: 384, Mismatches: 8, Indels: 48
0.87 0.02 0.11
Matches are distributed among these distances:
47 90 0.23
49 90 0.23
51 138 0.36
52 2 0.01
53 3 0.01
55 3 0.01
57 5 0.01
58 2 0.01
59 2 0.01
60 2 0.01
61 5 0.01
63 3 0.01
65 3 0.01
66 2 0.01
67 34 0.09
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (51 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:51414832 original size:100 final size:99
Alignment explanation
Indices: 51414546--51414903 Score: 606
Period size: 100 Copynumber: 3.7 Consensus size: 99
51414536 CCCTTTGGGA
*
51414546 CTTATCAC-AT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA
1 CTTATCACTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51414608 TACACTTTCACATTCATCACATCGGCCATTAGGC
66 TACACTTTCACATTCATCACATCGGCCATTAGGC
* **
51414642 CTTAT--CT-CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--GCATA
1 CTTATCACTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51414702 TACACTTTCACATTCATCACATCGGCCATTAGGC
66 TACACTTTCACATTCATCACATCGGCCATTAGGC
51414736 CTTATCACGTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC-TATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
51414801 ATACACTTTCACATTCATCACATCGGCCATTAGGC
65 ATACACTTTCACATTCATCACATCGGCCATTAGGC
51414836 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC-TATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
51414901 ATA
65 ATA
51414904 TTATCACATA
Statistics
Matches: 245, Mismatches: 8, Indels: 14
0.92 0.03 0.05
Matches are distributed among these distances:
94 43 0.18
95 1 0.00
96 49 0.20
97 1 0.00
98 47 0.19
100 104 0.42
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (99 bp):
CTTATCACTATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
TACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51414909 original size:16 final size:16
Alignment explanation
Indices: 51414888--51414920 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51414878 CCATTAGGCC
51414888 TTATCACATATATATA
1 TTATCACATATATATA
51414904 TTATCACATATATATA
1 TTATCACATATATATA
51414920 T
1 T
51414921 ACACTTTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (16 bp):
TTATCACATATATATA
Found at i:51414913 original size:67 final size:67
Alignment explanation
Indices: 51414837--51414971 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
51414827 CCATTAGGCC
51414837 TTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51414902 TA
66 TA
51414904 TTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51414969 TA
66 TA
51414971 T
1 T
51414972 ACACTTTCAC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.36
Consensus pattern (67 bp):
TTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
TA
Found at i:51414931 original size:118 final size:116
Alignment explanation
Indices: 51414788--51415073 Score: 554
Period size: 118 Copynumber: 2.4 Consensus size: 116
51414778 CCATTAGGCC
51414788 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
51414853 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
66 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
51414904 TTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
51414969 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
64 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
51415022 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
51415074 CTATCATTTC
Statistics
Matches: 168, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
116 52 0.31
118 116 0.69
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.35
Consensus pattern (116 bp):
TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
Found at i:51415048 original size:18 final size:16
Alignment explanation
Indices: 51415006--51415037 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51414996 CCATTAGGCC
51415006 TTATCACATATATATA
1 TTATCACATATATATA
51415022 TTATCACATATATATA
1 TTATCACATATATATA
51415038 CACTTTCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (16 bp):
TTATCACATATATATA
Found at i:51429577 original size:48 final size:48
Alignment explanation
Indices: 51429523--51429896 Score: 236
Period size: 48 Copynumber: 7.8 Consensus size: 48
51429513 ATATCGGTTT
* * *
51429523 CGATGCCATGTCCTAGACATGGTTTTACACGGGATCTCATATCGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
* * *** * * ** *
51429571 CAATGCCATATCTTGGATATGTTCTTACTTGAGA--ACATATACTGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGATCACATAT-C-GATGC
* * * * * * * * *
51429619 CGATGTCATATCCCATATATTGTCTTACACTGGAACACATATCAAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
* **
51429667 CGATGCCATGTCCCAGACATGGTCTTACATTC-GCA-CACATATTAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACA--CGGGATCACATATCGATGC
* * * *
51429715 CGATGCCATGTTCCAGACATGGTCTTACACTGGCA-CACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACAC-GGGATCACATATCGATGC
** * * * *
51429763 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTGGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGATCACAT-ATCGATGC
* * * * *
51429812 CAATGCCATGTCCCAGACATTGTCTTACACAGGATCTCATCTCGGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATC-GATGC
* * * * * *
51429861 TGGTGTCGTGTCCCAGACATGGTTTTACACGAGATC
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGATC
51429897 TCATTAACCA
Statistics
Matches: 253, Mismatches: 62, Indels: 21
0.75 0.18 0.06
Matches are distributed among these distances:
46 6 0.02
47 1 0.00
48 165 0.65
49 74 0.29
50 7 0.03
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
Found at i:51429693 original size:96 final size:96
Alignment explanation
Indices: 51429523--51429841 Score: 273
Period size: 96 Copynumber: 3.3 Consensus size: 96
51429513 ATATCGGTTT
* * * * * * * * * * ***
51429523 CGATGCCATGTCCTAGACATGGTTTTACACGGGATCTCATATCGATGCCAATGCCATATCTTGGA
1 CGATGCCATATCCCAGACATGGTCTTACACTGGAACACATATCAAAGCCGATGCCATGTCCCAGA
* * * *
51429588 TATGTTCTTAC-TTGAGAACATATACTGATGC
66 CATGGTCTTACATT-AGAACACATACTAATGC
* * * *
51429619 CGATGTCATATCCCATATATTGTCTTACACTGGAACACATATCAAAGCCGATGCCATGTCCCAGA
1 CGATGCCATATCCCAGACATGGTCTTACACTGGAACACATATCAAAGCCGATGCCATGTCCCAGA
* * *
51429684 CATGGTCTTACATTCGCACACATATTAATGC
66 CATGGTCTTACATTAGAACACATACTAATGC
* * * *
51429715 CGATGCCATGTTCCAGACATGGTCTTACACTGGCACACATATCAACGCCGATGCCATGTCCCAGA
1 CGATGCCATATCCCAGACATGGTCTTACACTGGAACACATATCAAAGCCGATGCCATGTCCCAGA
* ** * *
51429780 CATGGTCTTACACTAGCTCTCAT-CTTGGATGC
66 CATGGTCTTACATTAGAACACATAC-T-AATGC
* * *
51429812 CAATGCCATGTCCCAGACATTGTCTTACAC
1 CGATGCCATATCCCAGACATGGTCTTACAC
51429842 AGGATCTCAT
Statistics
Matches: 179, Mismatches: 41, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
96 146 0.82
97 33 0.18
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (96 bp):
CGATGCCATATCCCAGACATGGTCTTACACTGGAACACATATCAAAGCCGATGCCATGTCCCAGA
CATGGTCTTACATTAGAACACATACTAATGC
Found at i:51432737 original size:46 final size:46
Alignment explanation
Indices: 51432678--51432806 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
51432668 TGGTTGAGCA
* * *
51432678 TCCGGACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
51432724 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
51432770 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51432807 GTGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:51437520 original size:17 final size:17
Alignment explanation
Indices: 51437498--51437530 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
51437488 TCAATAGATT
*
51437498 GTATCCACTTGCGGATG
1 GTATCCACTAGCGGATG
51437515 GTATCCACTAGCGGAT
1 GTATCCACTAGCGGAT
51437531 ACTTCTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.27
Consensus pattern (17 bp):
GTATCCACTAGCGGATG
Found at i:51448096 original size:46 final size:47
Alignment explanation
Indices: 51447992--51448170 Score: 206
Period size: 46 Copynumber: 3.8 Consensus size: 47
51447982 CCACATTTTC
* * * *
51447992 AGAGCCAGTGTAAGACCATGCCTAGGACATGGCATCGGCATTGAGACG
1 AGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGACCTTGAGACG
*
51448040 AGAGCTAGTGTAAGA-CATGTCTGGGACATGCAAT-GACCTTGAGACG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGC-ATCGACCTTGAGACG
*
51448086 TA-AGCCAGTGTAAGA-CATGTCTGGGACATGCATCGA-CTATGAGATG
1 -AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGACCT-TGAGACG
* *
51448132 ATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 AGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGAC
51448171 ACTTTAACCA
Statistics
Matches: 115, Mismatches: 8, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
45 5 0.04
46 60 0.52
47 29 0.25
48 21 0.18
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.21
Consensus pattern (47 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGACCTTGAGACG
Found at i:51462530 original size:47 final size:47
Alignment explanation
Indices: 51462423--51462761 Score: 509
Period size: 47 Copynumber: 7.1 Consensus size: 47
51462413 GAAATGATAG
51462423 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
51462472 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
51462519 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51462566 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
*
51462617 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51462664 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
51462711 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51462758 TAAG
1 TAAG
51462762 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 16, Indels: 13
0.90 0.05 0.04
Matches are distributed among these distances:
46 5 0.02
47 180 0.67
48 2 0.01
49 36 0.13
51 45 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51462640 original size:98 final size:98
Alignment explanation
Indices: 51462423--51462761 Score: 489
Period size: 98 Copynumber: 3.5 Consensus size: 98
51462413 GAAATGATAG
51462423 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
51462488 ATGTGATGAATGTGAAAGTG----TATATACGTGA
64 ATGTGATGAATGTGAAAGTGTATATATATACGTGA
* *
51462519 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
51462584 GTGATGAATGTGAAAGTGTATATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATACGTGA
*
51462617 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
51462682 GTGATGAATGTGAAAGTG--TATATAT--GTGA
66 GTGATGAATGTGAAAGTGTATATATATACGTGA
* * * * * * *
51462711 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51462762 TCCCGAAGGG
Statistics
Matches: 224, Mismatches: 14, Indels: 12
0.90 0.06 0.05
Matches are distributed among these distances:
93 4 0.02
94 88 0.39
96 42 0.19
98 90 0.40
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (98 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATACGTGA
Found at i:51462684 original size:145 final size:145
Alignment explanation
Indices: 51462423--51462750 Score: 536
Period size: 145 Copynumber: 2.3 Consensus size: 145
51462413 GAAATGATAG
51462423 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
51462486 CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66 CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51462551 AGCGTATATATGAGA
131 AGCGTATATATGAGA
*
51462566 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAGGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
*
51462631 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66 CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
51462696 AGTGTATATATGTGA
131 AGCGTATATATGAGA
* * * * * *
51462711 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATA
51462751 AATGTGATAA
Statistics
Matches: 172, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
143 36 0.21
144 5 0.03
145 131 0.76
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (145 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGCGTATATATGAGA
Found at i:51462936 original size:37 final size:37
Alignment explanation
Indices: 51462880--51462958 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
51462870 CCGAGCTTTA
* * * *
51462880 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
*
51462917 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGAGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
51462954 AAGAC
1 AAGAC
51462959 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
Found at i:51471645 original size:19 final size:20
Alignment explanation
Indices: 51471621--51471661 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
51471611 AAGGATAACC
51471621 AAAATTC-ATAAT-TAAAAAT
1 AAAATTCTA-AATCTAAAAAT
51471640 AAAATTCTAAATCTAAAAAT
1 AAAATTCTAAATCTAAAAAT
51471660 AA
1 AA
51471662 TAATAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAATTCTAAATCTAAAAAT
Found at i:51481635 original size:42 final size:42
Alignment explanation
Indices: 51481578--51481670 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
51481568 GCCCAGCTAC
* *
51481578 GGTCTTACACAAAATCTCATATTGATGCCATATC-CTATATAT
1 GGTCTTACACAAAATCTCATAATGATGCCATATCTC-AGATAT
* *
51481620 GGTTTTACACGAAATCTCATAATGATGCCATATCTCAGATAT
1 GGTCTTACACAAAATCTCATAATGATGCCATATCTCAGATAT
51481662 GGTCTTACA
1 GGTCTTACA
51481671 TATAGTCTCG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.34
Consensus pattern (42 bp):
GGTCTTACACAAAATCTCATAATGATGCCATATCTCAGATAT
Found at i:51489748 original size:27 final size:27
Alignment explanation
Indices: 51489718--51489895 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
51489708 ATATTGAGCC
* *
51489718 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
51489745 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
51489772 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
51489800 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
51489827 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
51489854 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
51489881 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51489896 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:51489830 original size:55 final size:54
Alignment explanation
Indices: 51489718--51489895 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
51489708 ATATTGAGCC
* * * * *
51489718 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
51489772 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
51489827 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
51489881 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51489896 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:51497753 original size:27 final size:27
Alignment explanation
Indices: 51497723--51497900 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
51497713 ATATTGAGCC
* *
51497723 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
51497750 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
51497777 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
51497805 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
51497832 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
51497859 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
51497886 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51497901 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:51497835 original size:55 final size:54
Alignment explanation
Indices: 51497723--51497900 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
51497713 ATATTGAGCC
* * * * *
51497723 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
51497777 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
51497832 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
51497886 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51497901 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:51502963 original size:27 final size:27
Alignment explanation
Indices: 51502925--51503139 Score: 279
Period size: 27 Copynumber: 8.0 Consensus size: 27
51502915 ATATATACTG
* *
51502925 CACAT-AGAGGCAAAACAATCATCTTAC
1 CACATAAG-GGCAAAACAGTCATTTTAC
*
51502952 CACATAAGGGCAAAACATTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
51502979 CATATAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
51503006 CATATAAGGGCAAAACAGGCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
51503033 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
51503060 CATATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
51503087 CTCATAAGGGAAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
51503114 CTCATAAGGGCAAAAGAATCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
51503140 TCTATTAGTG
Statistics
Matches: 167, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 165 0.99
28 2 0.01
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:51503068 original size:81 final size:81
Alignment explanation
Indices: 51502933--51503139 Score: 317
Period size: 81 Copynumber: 2.6 Consensus size: 81
51502923 TGCACATAGA
* * * *
51502933 GGCAAAACAATCATCTTACCACATAAGGGCAAAACATTCATTTTACCATATAAGGGAAAAATAGT
1 GGCAAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCATATAAGGGAAAAACAGT
51502998 CATTTTACCAT-ATAAG
66 CATTTTACC-TCATAAG
* *
51503014 GGCAAAACAGGCATTTTACCACATAAGGGCAAAACAATCATTTTACCATATAAGGGCAAAACAGT
1 GGCAAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCATATAAGGGAAAAACAGT
51503079 CATTTTACCTCATAAG
66 CATTTTACCTCATAAG
* * *
51503095 GGAAAAACAGTCATTTTACCTCATAAGGGCAAAAGAATCATTTTA
1 GGCAAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTA
51503140 TCTATTAGTG
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 114 0.99
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (81 bp):
GGCAAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCATATAAGGGAAAAACAGT
CATTTTACCTCATAAG
Found at i:51503413 original size:17 final size:19
Alignment explanation
Indices: 51503362--51503407 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
51503352 TGTGGTTAAC
51503362 CCGTGTGGGGCCCACATAT
1 CCGTGTGGGGCCCACATAT
51503381 CCGTGTGGGGCCCACATAT
1 CCGTGTGGGGCCCACATAT
*
51503400 CTGTGTGG
1 CCGTGTGG
51503408 CTCACACTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.13, C:0.28, G:0.35, T:0.24
Consensus pattern (19 bp):
CCGTGTGGGGCCCACATAT
Found at i:51505831 original size:42 final size:42
Alignment explanation
Indices: 51505751--51505875 Score: 189
Period size: 42 Copynumber: 3.0 Consensus size: 42
51505741 CTTATATGAG
* * *
51505751 ATCTCATTTCGATGCCAATAGCCCAACTATGGTTTTACACAAA
1 ATCTCATATCGATGCC-ATATCCCAAATATGGTTTTACACAAA
*
51505794 ATCTCATATCGATGCCATATCCCAAATATGGTCTTACACAAA
1 ATCTCATATCGATGCCATATCCCAAATATGGTTTTACACAAA
51505836 ATCTCATAAT-GATGCCATATCCCAAATATGGTTTTACACA
1 ATCTCAT-ATCGATGCCATATCCCAAATATGGTTTTACACA
51505876 TAGTCTTGAT
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
42 59 0.78
43 17 0.22
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.30
Consensus pattern (42 bp):
ATCTCATATCGATGCCATATCCCAAATATGGTTTTACACAAA
Found at i:51507395 original size:30 final size:30
Alignment explanation
Indices: 51507361--51507451 Score: 173
Period size: 30 Copynumber: 3.0 Consensus size: 30
51507351 AGTGTTGGTA
51507361 ATGCTAGGTCTAATAAGCCTGAGTGCCAAC
1 ATGCTAGGTCTAATAAGCCTGAGTGCCAAC
51507391 ATGCTAGGTCTAATAAGCCTGAGTGCCAAC
1 ATGCTAGGTCTAATAAGCCTGAGTGCCAAC
*
51507421 ATGCTAGGTCTAATAAGCCTGAGTACCAAC
1 ATGCTAGGTCTAATAAGCCTGAGTGCCAAC
51507451 A
1 A
51507452 CTATGGTAGA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (30 bp):
ATGCTAGGTCTAATAAGCCTGAGTGCCAAC
Found at i:51516381 original size:37 final size:37
Alignment explanation
Indices: 51516331--51516409 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51516321 TTATTACGAA
* * *
51516331 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
51516368 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
51516405 GTCTT
1 GTCTT
51516410 TAGAGCTAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:51516628 original size:47 final size:47
Alignment explanation
Indices: 51516577--51517263 Score: 1059
Period size: 47 Copynumber: 14.3 Consensus size: 47
51516567 CTCGGCCCTG
*
51516577 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* *
51516624 TCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
51516671 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
51516718 TTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* *
51516765 TCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
51516812 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
51516859 TTACATATATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 -T-CACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* *
51516910 TCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* * *
51516957 TTACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
51517004 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* *
51517051 TTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
51517102 TCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
51517153 TCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
51517202 TTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
51517249 TCACACATATACACT
1 TCACATATATACACT
51517264 CTCTTGGCTG
Statistics
Matches: 604, Mismatches: 24, Indels: 24
0.93 0.04 0.04
Matches are distributed among these distances:
47 417 0.69
48 1 0.00
49 62 0.10
50 1 0.00
51 115 0.19
53 4 0.01
55 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
Done.