Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 164 of 295
Found at i:51516968 original size:192 final size:192
Alignment explanation
Indices: 51516577--51517261 Score: 1099
Period size: 192 Copynumber: 3.6 Consensus size: 192
51516567 CTCGGCCCTG
* *
51516577 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
* *
51516642 ACATTCATCGCATCGGCCATTAGGCCTTA-T-CACATAT--ATACACTTTCACATTCATCACATC
66 ACATTCATCACATCGGCTATTAGGCCTTATTACACATATACATACACTTTCACATTCATCACATC
*
51516703 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* *
51516765 TCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
*
51516830 ACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATC
66 ACATTCATCACATCGGCTATTAGGCCTTATTACACATATACATACACTTTCACATTCATCACATC
* * *
51516895 GGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* * *
51516957 TTACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
* *
51517022 ACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATATACTTTCACATTCATCACATC
66 ACATTCATCACATCGGCTATTAGGCCTTATTACACATATACATACACTTTCACATTCATCACATC
*
51517087 GGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
131 GGCCATTAGGCCTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
51517152 A
192 A
* * *
51517153 TCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTT
1 TCACACAT--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTT
*
51517218 TCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
64 TCACATTCATCACATCGGCTATTAGGCCTTATTACACATATACA
51517262 CTCTCTTGGC
Statistics
Matches: 462, Mismatches: 25, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
188 88 0.19
189 1 0.00
190 6 0.01
192 228 0.49
194 3 0.01
196 43 0.09
198 93 0.20
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (192 bp):
TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
ACATTCATCACATCGGCTATTAGGCCTTATTACACATATACATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
Found at i:51519456 original size:50 final size:50
Alignment explanation
Indices: 51519397--51519497 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
51519387 TCACGACATA
* * *
51519397 GAATGAAATTCAGCACATGCAATTTGTTTTCAATGTTGTGACAACAACAG
1 GAATGAAATTCAGCACAGGAAATTTGTCTTCAATGTTGTGACAACAACAG
*
51519447 GAATGAAATTCAGCACAGGAAATTTGTCTTCGATGTTGTGACAACAACAG
1 GAATGAAATTCAGCACAGGAAATTTGTCTTCAATGTTGTGACAACAACAG
51519497 G
1 G
51519498 GTATGTCACA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.28
Consensus pattern (50 bp):
GAATGAAATTCAGCACAGGAAATTTGTCTTCAATGTTGTGACAACAACAG
Found at i:51521823 original size:18 final size:18
Alignment explanation
Indices: 51521800--51521834 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51521790 AAGATGTACC
51521800 AAACTATTTTCATGCATA
1 AAACTATTTTCATGCATA
*
51521818 AAACTATTTTGATGCAT
1 AAACTATTTTCATGCAT
51521835 CATGTTCTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (18 bp):
AAACTATTTTCATGCATA
Found at i:51528501 original size:39 final size:39
Alignment explanation
Indices: 51528406--51528667 Score: 302
Period size: 39 Copynumber: 6.6 Consensus size: 39
51528396 TTGAATGATG
*
51528406 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
51528444 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
51528485 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
51528524 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
51528563 TTCAGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
51528602 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* **
51528641 AACCGGGCTATCTCCCGAAGGCATTTG
1 -TCCGGGCTA-AGCCCGAAGGCATTTG
51528668 AACGAGGAGC
Statistics
Matches: 196, Mismatches: 19, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
39 128 0.65
40 56 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:51536961 original size:49 final size:48
Alignment explanation
Indices: 51536688--51537051 Score: 508
Period size: 47 Copynumber: 7.6 Consensus size: 48
51536678 CCCTTCGGGA
* * * * * *
51536688 CTTATCAGATT-TATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51536734 CTCTGTCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51536782 CTCATCACA-TATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51536829 CTTATCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGC
51536876 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--AT-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
51536927 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51536976 CTTATCACATATATATATACATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT-TATATACAC-TTTCACATTCATCACATCGGCCATTAGGC
51537026 CTTATCACATATATATACA--TTCACAT
1 CTTATCACAT-TATATACACTTTCACAT
51537052 CACAATTATC
Statistics
Matches: 292, Mismatches: 18, Indels: 15
0.90 0.06 0.05
Matches are distributed among these distances:
46 3 0.01
47 136 0.47
48 2 0.01
49 59 0.20
50 47 0.16
51 45 0.15
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (48 bp):
CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51540747 original size:40 final size:40
Alignment explanation
Indices: 51540687--51540883 Score: 322
Period size: 40 Copynumber: 4.9 Consensus size: 40
51540677 CGAATACACG
* * * * *
51540687 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
51540727 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
51540767 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCTGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
51540807 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
51540847 TCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
51540884 TTAGTAACTC
Statistics
Matches: 147, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 147 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:51540916 original size:120 final size:120
Alignment explanation
Indices: 51540687--51540909 Score: 313
Period size: 120 Copynumber: 1.9 Consensus size: 120
51540677 CGAATACACG
* * *
51540687 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCATGAATGCTCTTCGGGA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATACATCACTAGCATGAATGCTCTTCGGGA
** **
51540752 CTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACTTAGCCTGGATACA
66 CTTAGCCCGGATACATAACTAGCACCAATGCTCTTCGGGACTTAGCCTGGATACA
* * *
51540807 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATACATCACTAGCATGAATGCTCTTCGGGA
** *
51540872 CTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGG
66 CTTAGCCCGGATACA-TAACTAGCACCAATGCTCTTCGG
51540910 ATCTTAGTCC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
120 78 0.88
121 11 0.12
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (120 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCGGATACATAACTAGCACCAATGCTCTTCGGGACTTAGCCTGGATACA
Found at i:51540948 original size:120 final size:120
Alignment explanation
Indices: 51540701--51540962 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
51540691 CAGCATGATT
* * *
51540701 GCTCTTCGGGATTTAGCACGGATATATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
1 GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
** ** * * *
51540766 ATCGCTAGCATGAATGCTCTTCGGGACTTAGCCTGGATACATCACTAGCATGAAT
66 ATAACTAGCACCAATGCTCTTCGGGACTTAGCCTAGATACATCACTAGCATCAAA
* **
51540821 GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATTT
1 GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
* **
51540886 AGTAACTCGCACCAATGC-CTTC-GGATCTTAGTCC-AGATATGGTCACTTAGCA-CAAA
66 A-TAACTAGCACCAATGCTCTTCGGGA-CTTAG-CCTAGATA-CATCAC-TAGCATCAAA
51540942 GC-CTTCGGGACTTAGCCCGGA
1 GCTCTTCGGGACTTAGCCCGGA
51540963 CATCATTCGA
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
119 3 0.02
120 92 0.76
121 21 0.17
122 5 0.04
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (120 bp):
GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
ATAACTAGCACCAATGCTCTTCGGGACTTAGCCTAGATACATCACTAGCATCAAA
Found at i:51541307 original size:29 final size:29
Alignment explanation
Indices: 51541268--51541346 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
51541258 CTTAATAATC
*
51541268 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
51541298 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
51541327 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
51541347 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:51541390 original size:43 final size:43
Alignment explanation
Indices: 51541329--51541430 Score: 195
Period size: 43 Copynumber: 2.4 Consensus size: 43
51541319 GCATTTCAAG
51541329 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
1 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
*
51541372 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTG
1 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
51541415 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
51541431 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.27, C:0.36, G:0.14, T:0.23
Consensus pattern (43 bp):
CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
Found at i:51543562 original size:47 final size:47
Alignment explanation
Indices: 51543484--51543843 Score: 515
Period size: 47 Copynumber: 7.6 Consensus size: 47
51543474 CCCTTCGGGA
* * * * * *
51543484 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51543530 CTCTGTCACATATATACACTTTAACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51543578 CTCATCACATATATACATTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51543625 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51543672 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51543721 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51543770 CTTATCACATATATATACATTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACAC-TTTCACATTCATCACATCGGCCATTAGGC
* *
51543818 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
51543844 CACAATTATC
Statistics
Matches: 285, Mismatches: 22, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
46 2 0.01
47 142 0.50
48 48 0.17
49 93 0.33
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51549455 original size:20 final size:20
Alignment explanation
Indices: 51549427--51549480 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
51549417 TACATGAAAG
*
51549427 GGGCGGCAATGGAGCTTCTT
1 GGGCAGCAATGGAGCTTCTT
51549447 GGGCAGCAATGGAGCTTCTT
1 GGGCAGCAATGGAGCTTCTT
*
51549467 GGGTAGCAATGGAG
1 GGGCAGCAATGGAG
51549481 ATCATTCTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.20, C:0.17, G:0.41, T:0.22
Consensus pattern (20 bp):
GGGCAGCAATGGAGCTTCTT
Found at i:51550175 original size:17 final size:18
Alignment explanation
Indices: 51550139--51550175 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
51550129 ACTAACCCCT
51550139 ATTTTCTTAGTCATCAAA
1 ATTTTCTTAGTCATCAAA
51550157 ATTTTCTTAGTCA-CAAA
1 ATTTTCTTAGTCATCAAA
51550174 AT
1 AT
51550176 AAATTAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.43
Consensus pattern (18 bp):
ATTTTCTTAGTCATCAAA
Found at i:51559229 original size:49 final size:49
Alignment explanation
Indices: 51559172--51559273 Score: 186
Period size: 49 Copynumber: 2.1 Consensus size: 49
51559162 TCGATGCACA
* *
51559172 CATAGTTTCTGTGCATACCTGTACTGTTATGTATCTATTCTCACCATTT
1 CATAGTTTCTATACATACCTGTACTGTTATGTATCTATTCTCACCATTT
51559221 CATAGTTTCTATACATACCTGTACTGTTATGTATCTATTCTCACCATTT
1 CATAGTTTCTATACATACCTGTACTGTTATGTATCTATTCTCACCATTT
51559270 CATA
1 CATA
51559274 TCTTCGATAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.24, C:0.23, G:0.10, T:0.44
Consensus pattern (49 bp):
CATAGTTTCTATACATACCTGTACTGTTATGTATCTATTCTCACCATTT
Found at i:51559396 original size:48 final size:48
Alignment explanation
Indices: 51559325--51559418 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
51559315 TACTCGAGAG
* *
51559325 TCTTGCACCCTAAGTGCGAATATCATGGCCCAAAGCCAACTCAATGAA
1 TCTTGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAACTCAATGAA
**
51559373 TCTTGCACCCGAAGTGCCAATATCATGGCCTGAAGCCAACTCAATG
1 TCTTGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAACTCAATG
51559419 TAACCCCAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (48 bp):
TCTTGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAACTCAATGAA
Found at i:51562023 original size:18 final size:18
Alignment explanation
Indices: 51562000--51562034 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51561990 AAGATGTACC
51562000 AAACTATTTTCATGCATG
1 AAACTATTTTCATGCATG
*
51562018 AAACTATTTTGATGCAT
1 AAACTATTTTCATGCAT
51562035 CATGCTCTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (18 bp):
AAACTATTTTCATGCATG
Found at i:51575742 original size:17 final size:19
Alignment explanation
Indices: 51575720--51575754 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
51575710 AATTAAGTAT
51575720 TTCAATT-AATCT-TAATA
1 TTCAATTCAATCTATAATA
51575737 TTCAATTCAATCTATAAT
1 TTCAATTCAATCTATAAT
51575755 TCACATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 5 0.31
19 4 0.25
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (19 bp):
TTCAATTCAATCTATAATA
Found at i:51579235 original size:40 final size:40
Alignment explanation
Indices: 51579175--51579358 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
51579165 TATTCGAATG
*
51579175 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
51579215 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
51579255 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
51579295 ATATCCAGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
51579335 ATATCTGGTCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
51579359 CTCGTGCGAG
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 118 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:51579308 original size:80 final size:80
Alignment explanation
Indices: 51579175--51579358 Score: 239
Period size: 80 Copynumber: 2.3 Consensus size: 80
51579165 TATTCGAATG
* * *
51579175 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
51579239 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
51579255 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCAGG-CTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCC-GGACTAAGTCCCGAAGGC
*
51579319 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* *
51579335 ATATCTGGTCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
51579359 CTCGTGCGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
79 3 0.03
80 87 0.95
81 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:51588185 original size:49 final size:49
Alignment explanation
Indices: 51588128--51588229 Score: 186
Period size: 49 Copynumber: 2.1 Consensus size: 49
51588118 TCGATGCACA
*
51588128 CATAGTTTCTGTGCATACCTGTACTGTTATGTATCTATTCTCACCATTT
1 CATAGTTTCTGTACATACCTGTACTGTTATGTATCTATTCTCACCATTT
*
51588177 CATAGTTTCTGTACATACTTGTACTGTTATGTATCTATTCTCACCATTT
1 CATAGTTTCTGTACATACCTGTACTGTTATGTATCTATTCTCACCATTT
51588226 CATA
1 CATA
51588230 TCGTCGATAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.23, C:0.22, G:0.11, T:0.45
Consensus pattern (49 bp):
CATAGTTTCTGTACATACCTGTACTGTTATGTATCTATTCTCACCATTT
Found at i:51588355 original size:48 final size:48
Alignment explanation
Indices: 51588281--51588374 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
51588271 TACTCGAGAG
*
51588281 TCTTGCACCCTAAGTGCCAATATCATGGCCCAAAGCCAACTCAATGAA
1 TCTTGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAACTCAATGAA
* **
51588329 TCTTGCACCCGAAGTGCCAATCTCATGGCCTGAAGCCAACTCAATG
1 TCTTGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAACTCAATG
51588375 TAACCCCAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (48 bp):
TCTTGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAACTCAATGAA
Found at i:51591705 original size:41 final size:40
Alignment explanation
Indices: 51591640--51591719 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 40
51591630 ATTGTAAATA
51591640 AGGGCACGTATATGCAATTCAAGGGTACCAAAGTACAAAC
1 AGGGCACGTATATGCAATTCAAGGGTACCAAAGTACAAAC
* * **
51591680 AGGGACACGTATGTGCAATTTAAGGGTACTGAAGTACAAA
1 AGGG-CACGTATATGCAATTCAAGGGTACCAAAGTACAAA
51591720 TATGAGCACA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
40 4 0.11
41 31 0.89
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (40 bp):
AGGGCACGTATATGCAATTCAAGGGTACCAAAGTACAAAC
Found at i:51601849 original size:13 final size:13
Alignment explanation
Indices: 51601831--51601862 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
51601821 TTATCTGCCA
*
51601831 CAAATTGATGTGG
1 CAAATTGATATGG
51601844 CAAATTGATATGG
1 CAAATTGATATGG
51601857 CAAATT
1 CAAATT
51601863 AAGCTTTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (13 bp):
CAAATTGATATGG
Found at i:51607344 original size:21 final size:21
Alignment explanation
Indices: 51607320--51607374 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
51607310 GAAACAAGGC
*
51607320 ACACGCCCTTGTAAAAGGGTA
1 ACACGCCCATGTAAAAGGGTA
* *
51607341 ACACGCCCGTGTAGAAGGGTA
1 ACACGCCCATGTAAAAGGGTA
*
51607362 ACAAGCCCATGTA
1 ACACGCCCATGTA
51607375 GAATTAATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.16
Consensus pattern (21 bp):
ACACGCCCATGTAAAAGGGTA
Found at i:51617257 original size:3 final size:3
Alignment explanation
Indices: 51617249--51617282 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
51617239 TTTTAATATC
*
51617249 ATA ATA ATA ATA AGA ATA ATA ATA ATA AT- ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
51617283 TTCTTTGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:51619871 original size:26 final size:26
Alignment explanation
Indices: 51619813--51619884 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
51619803 TCCTATACAG
* *
51619813 ATATGCTTACATGAGCTGCGAAATGA
1 ATATGCTCACATGAGCTGTGAAATGA
51619839 ATATGCTCACATGAGCTGTGAAAT-A
1 ATATGCTCACATGAGCTGTGAAATGA
* * *
51619864 GGTTTGCTCACACGAGCTGTG
1 -ATATGCTCACATGAGCTGTG
51619885 GAGTATCCGT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.03
26 39 0.98
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
ATATGCTCACATGAGCTGTGAAATGA
Found at i:51623135 original size:40 final size:40
Alignment explanation
Indices: 51622944--51623168 Score: 228
Period size: 40 Copynumber: 5.7 Consensus size: 40
51622934 TTGAATGATG
* * * *
51622944 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51622984 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51623024 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATT-CTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TTACTAAA
*
51623064 TCCGGGCTAAG-CCCGAAGGCATTTGTCCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51623103 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
51623144 -CTGGGCTATGTCCCGAATGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51623169 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 115 0.72
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51623150 original size:79 final size:80
Alignment explanation
Indices: 51622999--51623168 Score: 204
Period size: 79 Copynumber: 2.1 Consensus size: 80
51622989 ACTAAGATCT
*
51622999 GAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATTCTAAT
1 GAAGGCATTTGTCCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATTCTAAT
*
51623064 TCCGGGCTAAG-CCC
66 ACCGGGCTAAGTCCC
* * **
51623078 GAAGGCATTTGTCCGAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCATTTGTGCGAG-TTACT-
1 GAAGGCATTTGTCCGAGATACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATT-CTA
* *
51623140 ATAACTGGGCTATGTCCC
64 AT-ACCGGGCTAAGTCCC
*
51623158 GAATGCATTTG
1 GAAGGCATTTG
51623169 AACGAGTAGC
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
78 5 0.06
79 60 0.77
80 13 0.17
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (80 bp):
GAAGGCATTTGTCCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATTCTAAT
ACCGGGCTAAGTCCC
Found at i:51623190 original size:79 final size:79
Alignment explanation
Indices: 51622999--51623201 Score: 184
Period size: 79 Copynumber: 2.6 Consensus size: 79
51622989 ACTAAGATCT
** * *
51622999 GAAGGCATTTGTGCGAGATACTAAATC-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGATTCTA
1 GAAGGCATTTGAACGAGTTACTAAATCTCGG-TTAA-ATCCCGAAGGCATTTGTGCGAGATTCTA
*
51623062 ATTCCGGGCTAAGCCC
64 ATACCGGGCTAAGCCC
** * *
51623078 GAAGGCATTTGTCCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TTACT-A
1 GAAGGCATTTGAACGAGTTACTAAATCTCGGTTAAATCCCGAAGGCATTTGTGCGAGATT-CTAA
* *
51623141 TAACTGGGCTATGTCCC
65 T-ACCGGGCTAAG-CCC
* * *
51623158 GAATGCATTTGAACGAG-TAGCTATATC-CGGTTAAATTCCGAAGG
1 GAAGGCATTTGAACGAGTTA-CTAAATCTCGGTTAAATCCCGAAGG
51623202 TACGTGATTT
Statistics
Matches: 103, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
78 5 0.05
79 73 0.71
80 25 0.24
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGAACGAGTTACTAAATCTCGGTTAAATCCCGAAGGCATTTGTGCGAGATTCTAAT
ACCGGGCTAAGCCC
Found at i:51638112 original size:14 final size:14
Alignment explanation
Indices: 51638093--51638120 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51638083 GTTTCGATAG
51638093 TGTCACTCATGGGA
1 TGTCACTCATGGGA
51638107 TGTCACTCATGGGA
1 TGTCACTCATGGGA
51638121 AGGAATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (14 bp):
TGTCACTCATGGGA
Found at i:51641066 original size:45 final size:45
Alignment explanation
Indices: 51640998--51641089 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
51640988 CTTACTCGTA
*
51640998 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
1 ATATCGATGCCAACATCCCAGACGTGGTCTTACACGAAAACACAT
* *
51641043 ATATCGATGCCAACATCCTAGACGTGGTCTTACACGAAAACATAT
1 ATATCGATGCCAACATCCCAGACGTGGTCTTACACGAAAACACAT
51641088 AT
1 AT
51641090 CAGAATCCTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (45 bp):
ATATCGATGCCAACATCCCAGACGTGGTCTTACACGAAAACACAT
Found at i:51642537 original size:43 final size:42
Alignment explanation
Indices: 51642483--51642650 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 42
51642473 ATCGAGATGT
*
51642483 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTG
*
51642525 AGATTACGTGTAAGACCATGTCTAGGACATTGGCATCAT-TAATT-
1 -GATTACATGTAAGACCATGTCTAGGACATTGGCAT--TGT-ATTG
*** * * *
51642569 GATTTTGTGTAAGACCCTGTCTAGGACAGTGGCATCG-ATATG
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT-TG
* * * * *
51642611 TTATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 -GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
51642651 GAGCTTATGT
Statistics
Matches: 100, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 7 0.07
43 85 0.85
44 1 0.01
45 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTG
Found at i:51645253 original size:159 final size:159
Alignment explanation
Indices: 51644928--51645245 Score: 593
Period size: 159 Copynumber: 2.0 Consensus size: 159
51644918 CTTGAATATA
*
51644928 AATGAAGTGACCAATCAATCCTGACTGCAATAAAATGAGCTGATTTCGTAAGTCGATCAACAATC
1 AATGAAGTGACCAATCAATCCTGACTGCAATAAAATGAGCCGATTTCGTAAGTCGATCAACAATC
* *
51644993 ACCCAAACAGCATTTTTCTTACTTGCTGATAAAGGTAACCCCGTTACAAAATCCATTGTGATACA
66 ACCCAAACAACAATTTTCTTACTTGCTGATAAAGGTAACCCCGTTACAAAATCCATTGTGATACA
51645058 ATCCCATTTCCATTGAGGAATAGTAATAG
131 ATCCCATTTCCATTGAGGAATAGTAATAG
51645087 AATGAAGTGACCAATCAATCCTGACTGCAATAAAATGAGCCGATTTCGTAAGTCGATCAACAATC
1 AATGAAGTGACCAATCAATCCTGACTGCAATAAAATGAGCCGATTTCGTAAGTCGATCAACAATC
51645152 ACCCAAACAACAATTTTCTTACTTG-TCGATAAAGGTAACCCCGTTACAAAATCCATTGTGATAC
66 ACCCAAACAACAATTTTCTTACTTGCT-GATAAAGGTAACCCCGTTACAAAATCCATTGTGATAC
51645216 AATCCCATTTCCATTGAGGAATAGTAATAG
130 AATCCCATTTCCATTGAGGAATAGTAATAG
51645246 GCTGAAGTAA
Statistics
Matches: 155, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
158 1 0.01
159 154 0.99
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (159 bp):
AATGAAGTGACCAATCAATCCTGACTGCAATAAAATGAGCCGATTTCGTAAGTCGATCAACAATC
ACCCAAACAACAATTTTCTTACTTGCTGATAAAGGTAACCCCGTTACAAAATCCATTGTGATACA
ATCCCATTTCCATTGAGGAATAGTAATAG
Found at i:51657067 original size:47 final size:47
Alignment explanation
Indices: 51657016--51657257 Score: 304
Period size: 47 Copynumber: 5.1 Consensus size: 47
51657006 TTAGGATTTT
*
51657016 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * * *
51657063 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAAGCCGAATGGCGA
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
51657114 ATGTGATGAATGTGAACATGCGTATGTATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
51657161 ATGTGATGAATGTGGACATGCATATATGAGATAAGGCCGAATGGGCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
51657208 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
51657255 ATG
1 ATG
51657258 CGAAATGTGT
Statistics
Matches: 166, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
47 124 0.75
48 1 0.01
50 1 0.01
51 40 0.24
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:51657126 original size:98 final size:94
Alignment explanation
Indices: 51657016--51657257 Score: 333
Period size: 98 Copynumber: 2.5 Consensus size: 94
51657006 TTAGGATTTT
*
51657016 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
51657081 TGTATATATATGCGTGATAAAGCCGAAT-GGCGA
66 TG--CATATAT--GAGATAAAGCCGAATGGGC-A
* *
51657114 ATGTGATGAATGTGAACATGCGTATGTATGATAAGGCCGAATGGCCAATGTGATGAATGTGGACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
51657179 TGCATATATGAGATAAGGCCGAATGGGCA
66 TGCATATATGAGATAAAGCCGAATGGGCA
** * * *
51657208 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
51657258 CGAAATGTGT
Statistics
Matches: 131, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
94 58 0.44
95 3 0.02
96 6 0.05
98 64 0.49
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGAGATAAAGCCGAATGGGCA
Found at i:51657367 original size:46 final size:46
Alignment explanation
Indices: 51657231--51657367 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
51657221 GAACATGTAT
* * *
51657231 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* *
51657277 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* * *
51657323 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATG
51657368 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:51658314 original size:3 final size:3
Alignment explanation
Indices: 51658306--51658343 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
51658296 CTTATTTCAA
51658306 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51658344 ATTTTTACTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:51665642 original size:40 final size:39
Alignment explanation
Indices: 51665598--51665732 Score: 130
Period size: 40 Copynumber: 3.4 Consensus size: 39
51665588 ATCAGTTTGG
* *
51665598 CACCTAGTGCCACATCGGATAATTTGAAGTAATAAATTGA
1 CACCTAGTGCCTCATCGGATAATCTGAAGT-ATAAATTGA
* * * *
51665638 CACCTAGTGTCTCATCGGCTAAACTGAAG--TAAATTGG
1 CACCTAGTGCCTCATCGGATAATCTGAAGTATAAATTGA
* * * *
51665675 CACTTACTGCCTCATCGAATTAATCTAAAGTAGTAAATTGA
1 CACCTAGTGCCTCATCGGA-TAATCTGAAGTA-TAAATTGA
*
51665716 CACCTAGTGTCTCATCG
1 CACCTAGTGCCTCATCG
51665733 ACTTGAAGTT
Statistics
Matches: 74, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
37 21 0.28
38 8 0.11
40 24 0.32
41 21 0.28
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (39 bp):
CACCTAGTGCCTCATCGGATAATCTGAAGTATAAATTGA
Found at i:51666371 original size:28 final size:28
Alignment explanation
Indices: 51666331--51666394 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
51666321 CATATTTTTC
51666331 ACAATTTAGTCCCTATTACTCAAAATTT
1 ACAATTTAGTCCCTATTACTCAAAATTT
51666359 ACAATTTAGTCCCTATTACTCAAAATTT
1 ACAATTTAGTCCCTATTACTCAAAATTT
51666387 ACAATTTA
1 ACAATTTA
51666395 TTCTTCAGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.39
Consensus pattern (28 bp):
ACAATTTAGTCCCTATTACTCAAAATTT
Found at i:51666686 original size:19 final size:19
Alignment explanation
Indices: 51666648--51666685 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
51666638 TTTTTCCTTC
51666648 TGTTTCTTTTCAATTCTTT
1 TGTTTCTTTTCAATTCTTT
*
51666667 TGTTTCTTTT-AATTGTTT
1 TGTTTCTTTTCAATTCTTT
51666685 T
1 T
51666686 TATGTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.11, C:0.11, G:0.08, T:0.71
Consensus pattern (19 bp):
TGTTTCTTTTCAATTCTTT
Found at i:51670419 original size:40 final size:40
Alignment explanation
Indices: 51670356--51670566 Score: 320
Period size: 40 Copynumber: 5.3 Consensus size: 40
51670346 ATTCGGATTG
51670356 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51670395 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
51670435 ATAACCAGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51670475 ATAACAGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51670515 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
51670555 ATATCC-GGCTAA
1 ATAACCGGGCTAA
51670567 ACCGCGAAGG
Statistics
Matches: 158, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 21 0.13
40 137 0.87
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51678508 original size:40 final size:40
Alignment explanation
Indices: 51678445--51678664 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
51678435 ATTCGGATTG
*
51678445 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
51678484 ATATCCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
51678523 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
51678563 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
51678603 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* **
51678643 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
51678665 TACTTGGTTT
Statistics
Matches: 170, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
39 66 0.39
40 104 0.61
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:51700056 original size:51 final size:50
Alignment explanation
Indices: 51699993--51700123 Score: 140
Period size: 50 Copynumber: 2.6 Consensus size: 50
51699983 ATGAACAAAT
*
51699993 GAGTTACTTAATGTATGACTTAATTTAATGATGCAAACTTTAACTAACATGA
1 GAGTTACATAATGT-TGACTTAATTTAATGATGCAAAC-TTAACTAACATGA
* * * * *
51700045 GAG-TACATAATGCGTGTCATAATTT-ATGATGCCAACTTAATTAACATGA
1 GAGTTACATAATG-TTGACTTAATTTAATGATGCAAACTTAACTAACATGA
* *
51700094 GAGTTACATAATGCTTGACTTTATTAAATG
1 GAGTTACATAATG-TTGACTTAATTTAATG
51700124 CAGAACACAT
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
49 15 0.23
50 27 0.42
51 20 0.31
52 3 0.05
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (50 bp):
GAGTTACATAATGTTGACTTAATTTAATGATGCAAACTTAACTAACATGA
Found at i:51702800 original size:47 final size:47
Alignment explanation
Indices: 51702655--51703125 Score: 789
Period size: 47 Copynumber: 9.9 Consensus size: 47
51702645 TTAGGATTCT
* *
51702655 ATGTGATGGATGTGAACATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCG
*
51702704 ATGAGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCG
51702753 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51702800 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
51702849 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51702896 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
51702945 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
51702992 ATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
51703039 ATGTGATGAATGTGAGAGTATATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51703086 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
51703126 TGTGACAGCC
Statistics
Matches: 402, Mismatches: 14, Indels: 14
0.93 0.03 0.03
Matches are distributed among these distances:
47 247 0.61
48 1 0.00
49 154 0.38
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:51702808 original size:96 final size:95
Alignment explanation
Indices: 51702655--51703125 Score: 802
Period size: 96 Copynumber: 4.9 Consensus size: 95
51702645 TTAGGATTCT
* * *
51702655 ATGTGATGGATGTGAACATGTATATATATGTGATAAGGCCTAATGGCCGATGAGATGAATGTGAA
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51702720 AGTGTATATACATGTGATAAGGCCTAATGGCCG
64 AGTGTATATA-ATGTGATAAGGCCTAATGGCCG
51702753 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
51702818 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATA-ATGTGATAAGGCCTAATGGCCG
51702849 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
51702914 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATA-ATGTGATAAGGCCTAATGGCCG
*
51702945 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
51703010 TGCATAT-ATGTGATAAGGCCTAATGGCCG
66 TGTATATAATGTGATAAGGCCTAATGGCCG
* * * *
51703039 ATGTGATGAATGTGAGAGTATATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
51703104 TGTATAT-ATGTGATAAGGCCTA
66 TGTATATAATGTGATAAGGCCTA
51703126 TGTGACAGCC
Statistics
Matches: 363, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
94 105 0.29
96 242 0.67
97 1 0.00
98 15 0.04
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (95 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATAATGTGATAAGGCCTAATGGCCG
Found at i:51705716 original size:40 final size:40
Alignment explanation
Indices: 51705663--51705934 Score: 429
Period size: 40 Copynumber: 6.8 Consensus size: 40
51705653 CAGCCGCAAA
* * * *
51705663 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
51705703 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
51705743 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
51705783 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
51705823 CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
51705863 CATAATTGCCTTCGGGTCTTAGCCCGGATAT-TCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
51705902 CATAATTGCCTTCGGGTCATAACCCGGATATAT
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATAT
51705935 TCCAATGTTC
Statistics
Matches: 213, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 37 0.17
40 176 0.83
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:51714591 original size:40 final size:40
Alignment explanation
Indices: 51714538--51714807 Score: 429
Period size: 40 Copynumber: 6.8 Consensus size: 40
51714528 CAGCCGCAAA
* * * *
51714538 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
51714578 CATAATTGCCTTCGGGTCTTAGCCCGGATATATC-A-TCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
51714616 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
51714656 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
51714696 CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
51714736 CATAATTGCCTTCGGGTCTTAGCCCGGATAT-TCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
51714775 CATAATTGCCTTCGGGTCATAACCCGGATATAT
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATAT
51714808 TCCAATGTTC
Statistics
Matches: 213, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 36 0.17
39 39 0.18
40 138 0.65
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:51727468 original size:38 final size:38
Alignment explanation
Indices: 51727333--51727626 Score: 242
Period size: 39 Copynumber: 7.6 Consensus size: 38
51727323 GCTCCTCGTT
* * * * *
51727333 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAA-GCCTTCGGG-CTTAACCCGGATTTAGTATCTCGCA
* * ** *
51727373 CAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAAGCCTTCGGG-CTTAACCCGGATTTAGTATCTCGCA
* *
51727412 CGAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCA
1 C-AAAGCCTTCGGGCTTAACCCGGATTTAGTATCTCGCA
51727451 CAAAGCCTTCGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAAGCCTTCGGGCTTAACCCGG-ATTTAGTATCTCGCA
51727489 CAAATGCCTTCGGGCTTAA-CCGGA-TT-GTATCTCGCA
1 CAAA-GCCTTCGGGCTTAACCCGGATTTAGTATCTCGCA
* * *
51727525 CAATGCCTTCGGGCTTAA-CCAGAATT-GTATCTCGCA
1 CAAAGCCTTCGGGCTTAACCCGGATTTAGTATCTCGCA
* ** * * *
51727561 CAAATGCCTTCGGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAA-GCCTTCGG-GCTTAACCCGGATTTAGT-ATC-TCGCA
*
51727602 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGG-CTTAACCCGGA
51727627 CAGCATTCAA
Statistics
Matches: 218, Mismatches: 25, Indels: 22
0.82 0.09 0.08
Matches are distributed among these distances:
35 18 0.08
36 30 0.14
37 9 0.04
38 42 0.19
39 76 0.35
40 34 0.16
41 9 0.04
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (38 bp):
CAAAGCCTTCGGGCTTAACCCGGATTTAGTATCTCGCA
Found at i:51727500 original size:77 final size:78
Alignment explanation
Indices: 51727333--51727626 Score: 300
Period size: 77 Copynumber: 3.8 Consensus size: 78
51727323 GCTCCTCGTT
* * * * * * *
51727333 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACAAAGCCTTCGGGACTTAACCCGGA
** *
51727397 ATTTAACAACTCGCA
65 ATTT-GTATCTCGCA
*
51727412 CGAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCACAAAGCCTTCGGG-CTTAACCCGGAA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCACAAAGCCTTCGGGACTTAACCCGGAA
51727476 TTTGTATCTCGCA
66 TTTGTATCTCGCA
* * *
51727489 CAAATGCCTTCGGGCTTAA-CCGGA-TT-GTATCTCGCACAATGCCTTCGGG-CTTAA-CCAGAA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCACAAAGCCTTCGGGACTTAACCCGGAA
51727549 -TTGTATCTCGCA
66 TTTGTATCTCGCA
** * * * *
51727561 CAAATGCCTTCGGATCTTAGTCCGGATATATTCA-CTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAACCCGGATTTAGT-ATC-TCGCACAAAGCCTTCGGGACTTAACCCG
51727625 GA
63 GA
51727627 CAGCATTCAA
Statistics
Matches: 183, Mismatches: 23, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
72 25 0.14
73 9 0.05
74 32 0.17
75 3 0.02
76 7 0.04
77 50 0.27
78 43 0.23
79 14 0.08
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTGTATCTCGCA
Found at i:51727524 original size:36 final size:38
Alignment explanation
Indices: 51727333--51727573 Score: 269
Period size: 39 Copynumber: 6.3 Consensus size: 38
51727323 GCTCCTCGTT
* * * * *
51727333 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGG-CTTAACCCGGATTT-GTATCTCGCA
* ** *
51727373 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTT-GTATCTCGCA
* *
51727412 CGAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTT-GTATCTCGCA
51727451 CAAA-GCCTTCGGGCTTAACCCGGAATTTGTATCTCGCA
1 CAAATGCCTTCGGGCTTAACCCGG-ATTTGTATCTCGCA
51727489 CAAATGCCTTCGGGCTTAA-CCGGA-TTGTATCTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTGTATCTCGCA
* *
51727525 C-AATGCCTTCGGGCTTAA-CCAGAATTGTATCTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTGTATCTCGCA
51727561 CAAATGCCTTCGG
1 CAAATGCCTTCGG
51727574 ATCTTAGTCC
Statistics
Matches: 183, Mismatches: 13, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
35 21 0.11
36 26 0.14
37 12 0.07
38 36 0.20
39 76 0.42
40 12 0.07
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTGTATCTCGCA
Found at i:51727610 original size:112 final size:114
Alignment explanation
Indices: 51727369--51727619 Score: 266
Period size: 112 Copynumber: 2.2 Consensus size: 114
51727359 TTTAGTAACT
* *
51727369 CACACAATGCCTTCGGGACATAACCCGGATT-TAACAACTCGCACGAATGCCTTCGGACTTAACC
1 CACA-AATGCCTTCGGGACTTAA-CCGGATTGT---ATCTCGCACGAATGCCTTCGGACTTAACC
* * * *
51727433 CGGATTTAGTATCTCGCACAAAGCCTTCGGGCTTAACCCGGAATTTGTATCTCG
61 CAGAATTAGTATCTCGCACAAAGCCTTCGGGCTTAACCCGGAATTTGCATCTAG
*
51727487 CACAAATGCCTTCGGG-CTTAACCGGATTGTATCTCGCAC-AATGCCTTCGGGCTTAA-CCAGAA
1 CACAAATGCCTTCGGGACTTAACCGGATTGTATCTCGCACGAATGCCTTCGGACTTAACCCAGAA
* **
51727549 TT-GTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATATT-CA-CTTAG
66 TTAGTATCTCGCACAAA-GCCTTCGG-GCTTAACCCGGA-AT-TTGCATC-TAG
51727600 CACAAA-GCCTTCGGGACTTA
1 CACAAATGCCTTCGGGACTTA
51727620 GCCCGGACAG
Statistics
Matches: 116, Mismatches: 10, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
110 14 0.12
111 14 0.12
112 35 0.30
113 23 0.20
114 2 0.02
115 7 0.06
116 5 0.04
117 12 0.10
118 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (114 bp):
CACAAATGCCTTCGGGACTTAACCGGATTGTATCTCGCACGAATGCCTTCGGACTTAACCCAGAA
TTAGTATCTCGCACAAAGCCTTCGGGCTTAACCCGGAATTTGCATCTAG
Found at i:51727635 original size:41 final size:41
Alignment explanation
Indices: 51727558--51727635 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
51727548 ATTGTATCTC
* * *
51727558 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
51727599 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
51727636 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:51735422 original size:40 final size:40
Alignment explanation
Indices: 51735322--51735585 Score: 272
Period size: 40 Copynumber: 6.7 Consensus size: 40
51735312 GCTCCTCGTT
* * * * *
51735322 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* ** *
51735362 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
51735401 CGAATGCCTTCGGGACTTAACCCAGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
51735441 CAAATGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
*
51735480 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
** * * *
51735520 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-ATC-TCGCA
*
51735561 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51735586 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
39 72 0.37
40 113 0.57
41 12 0.06
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:51735431 original size:79 final size:79
Alignment explanation
Indices: 51735322--51735532 Score: 266
Period size: 79 Copynumber: 2.7 Consensus size: 79
51735312 GCTCCTCGTT
* * * * *
51735322 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTCGGG-CATAACCCGG
51735386 -ATTTAACAACTCGCA
65 AATTT-ACAACTCGCA
* * *
51735401 CGAATGCCTTCGGGACTTAACCCAGATTTAGTATCTCGCACAAATGCCTTCGGGCTTAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTCGGGCATAACCCGGA
** *
51735466 ATTTGTATCTCGCA
66 ATTTACAACTCGCA
*
51735480 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTCGG
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCACAAATGCCTTCGG
51735533 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
79 95 0.83
80 20 0.17
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTCGGGCATAACCCGGA
ATTTACAACTCGCA
Found at i:51735594 original size:41 final size:41
Alignment explanation
Indices: 51735517--51735594 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
51735507 TTTGTATCTC
* * *
51735517 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
51735558 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
51735595 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:51738247 original size:27 final size:27
Alignment explanation
Indices: 51738118--51738273 Score: 138
Period size: 27 Copynumber: 5.8 Consensus size: 27
51738108 ACCCCCGACC
** * **
51738118 TGTAAAATTATTGAAATACCCCCGGGT
1 TGTAAAATTATCAAAATACCCTCGATT
*
51738145 TGTAAAATTA-CTAAAATACCTTCGATT
1 TGTAAAATTATC-AAAATACCCTCGATT
* * * * *
51738172 TGTGAAATTTTCCAAATACCCCCGACT
1 TGTAAAATTATCAAAATACCCTCGATT
51738199 TGTAAAATTA-CTAAAATACCCTCGATT
1 TGTAAAATTATC-AAAATACCCTCGATT
* *
51738226 TGTAAAATTATCAAAATACCCT-TATAG
1 TGTAAAATTATCAAAATACCCTCGAT-T
*
51738253 TGTAAAATTACCAAAATACCC
1 TGTAAAATTATCAAAATACCC
51738274 CTATAGGGTA
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
26 3 0.03
27 99 0.95
28 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TGTAAAATTATCAAAATACCCTCGATT
Found at i:51738261 original size:81 final size:80
Alignment explanation
Indices: 51738108--51738274 Score: 187
Period size: 81 Copynumber: 2.1 Consensus size: 80
51738098 GGTCGTTAAG
* * * *
51738108 ACCCCCGACCTGTAAAATTATTGAAATACCCCCGGGTTGTAAAATTACTAAAATACCTTCGATTT
1 ACCCCCGACCTGTAAAATTACTAAAATACCCCCGAGTTGTAAAATTACTAAAATACCTTC-ATGT
* *
51738173 GTGAAATTTTCC-AAAT
65 GT-AAAATTACCAAAAT
* * *
51738189 ACCCCCGACTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTA-TCAAAATACCCTT-ATA
1 ACCCCCGACCTGTAAAATTACTAAAATACCCCCGAGTTGTAAAATTACT-AAAATA-CCTTCAT-
51738252 GTGTAAAATTACCAAAAT
63 GTGTAAAATTACCAAAAT
51738270 ACCCC
1 ACCCC
51738275 TATAGGGTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
80 10 0.14
81 59 0.81
82 4 0.05
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (80 bp):
ACCCCCGACCTGTAAAATTACTAAAATACCCCCGAGTTGTAAAATTACTAAAATACCTTCATGTG
TAAAATTACCAAAAT
Found at i:51738273 original size:54 final size:54
Alignment explanation
Indices: 51738118--51738246 Score: 186
Period size: 54 Copynumber: 2.4 Consensus size: 54
51738108 ACCCCCGACC
** ** *
51738118 TGTAAAATTATTGAAATACCCCCGGGTTGTAAAATTACTAAAATACCTTCGATT
1 TGTAAAATTATCAAAATACCCCCGACTTGTAAAATTACTAAAATACCCTCGATT
* * *
51738172 TGTGAAATTTTCCAAATACCCCCGACTTGTAAAATTACTAAAATACCCTCGATT
1 TGTAAAATTATCAAAATACCCCCGACTTGTAAAATTACTAAAATACCCTCGATT
51738226 TGTAAAATTATCAAAATACCC
1 TGTAAAATTATCAAAATACCC
51738247 TTATAGTGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
TGTAAAATTATCAAAATACCCCCGACTTGTAAAATTACTAAAATACCCTCGATT
Found at i:51738278 original size:27 final size:27
Alignment explanation
Indices: 51738199--51738287 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
51738189 ACCCCCGACT
* * *
51738199 TGTAAAATTACTAAAATACCCTCGAT-T
1 TGTAAAATTACCAAAATACCC-CTATAG
* *
51738226 TGTAAAATTATCAAAATACCCTTATAG
1 TGTAAAATTACCAAAATACCCCTATAG
51738253 TGTAAAATTACCAAAATACCCCTATAG
1 TGTAAAATTACCAAAATACCCCTATAG
*
51738280 GGTAAAAT
1 TGTAAAAT
51738288 AATTGTTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.04
27 51 0.96
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCCTATAG
Found at i:51751097 original size:28 final size:28
Alignment explanation
Indices: 51751051--51751104 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
51751041 ACAGTAATAA
* * * *
51751051 AACAGTTTGGGCTTTAGCCCTATACAGT
1 AACAGTGTGGGCCTAAGCCCAATACAGT
51751079 AACAGTGTGGGCCTAAGCCCAATACA
1 AACAGTGTGGGCCTAAGCCCAATACA
51751105 ATATCAGTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (28 bp):
AACAGTGTGGGCCTAAGCCCAATACAGT
Found at i:51751326 original size:27 final size:26
Alignment explanation
Indices: 51751268--51751348 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 26
51751258 ATCTAGCAGA
*
51751268 AACAGTAAATGTGGCA-AACCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
*
51751294 ATCAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAA-TGTGGCATAGCCACCAGT
* *
51751321 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
51751348 A
1 A
51751349 GAGTACTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.04
26 12 0.26
27 31 0.66
28 2 0.04
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGCCACCAGT
Found at i:51751688 original size:53 final size:53
Alignment explanation
Indices: 51751519--51751689 Score: 182
Period size: 53 Copynumber: 3.2 Consensus size: 53
51751509 TATTACGGTC
* * * * *
51751519 ATTTCACAAACTAGGGGTATTTTAGTAA-TTCACAAATTAGGGGTATTTCGATA
1 ATTTTACAAATTAGGGGTA-TTTGGTAATTTTACAAATTGGGGGTATTTCGATA
* * *** *
51751572 ATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAGTCGGACCTATTTCAATA
1 ATTTTACAAATTAGGGGTATTT-GGTAATTTTACAAATTGGGGGTATTTCGATA
* * *
51751626 ATTTCACAAATTAGGGGTATTTGGTAATTTTACAAATTGGGGGTATTTTGGTA
1 ATTTTACAAATTAGGGGTATTTGGTAATTTTACAAATTGGGGGTATTTCGATA
*
51751679 GTTTTACAAAT
1 ATTTTACAAAT
51751690 CGGGGCCTTA
Statistics
Matches: 94, Mismatches: 22, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
52 3 0.03
53 53 0.56
54 38 0.40
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (53 bp):
ATTTTACAAATTAGGGGTATTTGGTAATTTTACAAATTGGGGGTATTTCGATA
Found at i:51751694 original size:27 final size:27
Alignment explanation
Indices: 51751506--51751689 Score: 176
Period size: 27 Copynumber: 6.9 Consensus size: 27
51751496 TACCATACAA
* * * *
51751506 GGGTATTACGGTCATTTCACAAACTAG
1 GGGTATTTCGGTAATTTTACAAATTAG
** *
51751533 GGGTATTTTAGTAA-TTCACAAATTAG
1 GGGTATTTCGGTAATTTTACAAATTAG
*
51751559 GGGTATTTCGATAATTTTACAAATTAG
1 GGGTATTTCGGTAATTTTACAAATTAG
* *
51751586 GGGTATTTCGGTAATTTTAC-AAGTCG
1 GGGTATTTCGGTAATTTTACAAATTAG
** ** *
51751612 GACCTATTTCAATAATTTCACAAATTAG
1 G-GGTATTTCGGTAATTTTACAAATTAG
*
51751640 GGGTATTT-GGTAATTTTACAAATTGG
1 GGGTATTTCGGTAATTTTACAAATTAG
* *
51751666 GGGTATTTTGGTAGTTTTACAAAT
1 GGGTATTTCGGTAATTTTACAAAT
51751690 CGGGGCCTTA
Statistics
Matches: 127, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 49 0.39
27 73 0.57
28 5 0.04
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATTAG
Found at i:51755217 original size:43 final size:43
Alignment explanation
Indices: 51755115--51755276 Score: 125
Period size: 43 Copynumber: 3.8 Consensus size: 43
51755105 AGCTCGTACA
* * * ** *
51755115 ATGCC-ATATCCCAGATATGGTCTTGCATGTTATCAC-ATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCTCAATA-CG
* * * * * *
51755157 ATGCCACTATCCTAGACAAGGTCTTACATGAAAT-TGACTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCTCAAT-ACG
* * *
51755200 ATGCCAATGTCCCAGACATGGT-TTACACGTAATCTCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCTCAATACG
* *
51755242 ATGCCAATGTTCCAGACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATC
51755277 ATATCTCGAT
Statistics
Matches: 94, Mismatches: 21, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
42 37 0.39
43 56 0.60
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCTCAATACG
Found at i:51756423 original size:28 final size:27
Alignment explanation
Indices: 51756324--51756425 Score: 71
Period size: 28 Copynumber: 3.5 Consensus size: 27
51756314 TCAGAGTTAA
* * *
51756324 CTAGGCCTTAGCCCATATCAATATTAAT
1 CTAGGCCATAGCCCAT-TCAGTATCAAT
* *
51756352 CTGGGCCATAGCCCCTTACAGTATCAGAGTAT
1 CTAGGCCATAGCCCATT-CAGTATC--A--AT
*
51756384 ACTGGGCC-TAGCCCATGTCAGTATCAAT
1 -CTAGGCCATAGCCCAT-TCAGTATCAAT
51756412 CTAGGCCATAGCCC
1 CTAGGCCATAGCCC
51756426 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 26 0.44
30 2 0.03
32 16 0.27
33 8 0.14
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (27 bp):
CTAGGCCATAGCCCATTCAGTATCAAT
Found at i:51756450 original size:60 final size:59
Alignment explanation
Indices: 51756313--51756461 Score: 151
Period size: 60 Copynumber: 2.5 Consensus size: 59
51756303 CTATTCAGAA
* * * *
51756313 ATCAGAGT-TAACTAGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATCAATCTAGGCCATAGCCCATTACAG
* *
51756373 TATCAGAGTATACTGGGCCTAGCCCATGTCAGTATCAATCTAGGCCATAGCCCTATTACA-
1 -ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTAGGCCATAGCCC-ATTACAG
* *
51756433 AGTC-GAGATATATTGGGCCTTGCCCATAT
1 A-TCAGAG-TATACTGGGCCTAGCCCATAT
51756462 TAACACAGTT
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
59 4 0.05
60 50 0.67
61 20 0.27
62 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTAGGCCATAGCCCATTACAG
Found at i:51756479 original size:20 final size:20
Alignment explanation
Indices: 51756454--51756493 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51756444 ATTGGGCCTT
51756454 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
51756474 GCCCATTTCAATACAGTTGG
1 GCCCATTTCAACACAGTTGG
51756494 CCGATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:51760430 original size:61 final size:61
Alignment explanation
Indices: 51760365--51760503 Score: 160
Period size: 60 Copynumber: 2.3 Consensus size: 61
51760355 ATGAGAGTTA
* * *
51760365 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATCAGAGTAT
1 ACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCATAGCCCTATTACAAGT-TCAGA-TAT
* * * *
51760426 ACTGGGCC-TAGCCCATGTCAGTATCAATCTAGGCCGTAGCCCTATTACAAGTTGAGATAT
1 ACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCATAGCCCTATTACAAGTTCAGATAT
*
51760486 ATTGGGCCTT-GCCCATAT
1 ACTGGGCCTTAGCCCATAT
51760504 TAACAAGTTG
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
60 46 0.70
61 17 0.26
62 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (61 bp):
ACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCATAGCCCTATTACAAGTTCAGATAT
Found at i:51770856 original size:28 final size:27
Alignment explanation
Indices: 51770806--51770858 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
51770796 CTATTCAGAA
* *
51770806 ATCAGTGTTAACTGGGCCTTAGCCCAT
1 ATCAGTATTAACTGGGCCATAGCCCAT
51770833 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTGGGCCATAGCCC
51770859 TATTACAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTGGGCCATAGCCCAT
Found at i:51770861 original size:62 final size:60
Alignment explanation
Indices: 51770783--51770927 Score: 168
Period size: 61 Copynumber: 2.4 Consensus size: 60
51770773 TCAAGCTTTA
* * *
51770783 CTGGGCCTAAGCCCTATT-CAGAAATCAGTG-TTAACTGGGCCTTAGCCCATATCAGTATTAAT
1 CTGGGCCT-AGCCCTATTACA-AAATCAGAGCAT-ACTGGGCC-TAGCCCATATCAGTATCAAT
* *
51770845 CTGGGCCATAGCCCTATTACAATATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAGT
1 CTGGGCC-TAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
*
51770906 CTGGGTCGTAGCCCTATTACAA
1 CTGGG-CCTAGCCCTATTACAA
51770928 GTCGAGATAT
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
61 37 0.51
62 32 0.44
63 4 0.05
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (60 bp):
CTGGGCCTAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
Found at i:51770973 original size:20 final size:19
Alignment explanation
Indices: 51770948--51771003 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 19
51770938 ATTGGGTCTT
*
51770948 GCCCATATTAACACAGTTGG
1 GCCCATATTAAAACAGTT-G
* * *
51770968 GCCCATTTTAATACAATTG
1 GCCCATATTAAAACAGTTG
*
51770987 GCCCATAATAAAACAGT
1 GCCCATATTAAAACAGT
51771004 CTCATATGAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (19 bp):
GCCCATATTAAAACAGTTG
Found at i:51777284 original size:40 final size:39
Alignment explanation
Indices: 51777201--51777374 Score: 224
Period size: 40 Copynumber: 4.4 Consensus size: 39
51777191 CAACCAAGTA
** *
51777201 CCTTCGGGGTTTAGCCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
* * *
51777240 CCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAATTT
1 CCTTCGGGACTTAGC-CGGATATAGTAACTCGCACAAATG
* *
51777280 CCTTCAGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
*
51777320 CCTTCGGGACTTAGCCTGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTAACTCGCACAAATG
51777360 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
51777375 ACGGTTATCA
Statistics
Matches: 119, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 16 0.13
40 102 0.86
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:51785418 original size:39 final size:40
Alignment explanation
Indices: 51785349--51785567 Score: 279
Period size: 39 Copynumber: 5.5 Consensus size: 40
51785339 CAACCAAGTA
** * *
51785349 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAG-TAACTCGCACAAATG
** *
51785388 CCTT-GGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
51785427 CCTTCCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 -----CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
51785472 CCTTC-GGACTTAGCCC-GAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
51785510 CCTTCGGGACTTAGCCC-GAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
51785549 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51785568 TTATCATCCG
Statistics
Matches: 162, Mismatches: 8, Indels: 19
0.86 0.04 0.10
Matches are distributed among these distances:
38 35 0.22
39 85 0.52
40 6 0.04
44 4 0.02
45 32 0.20
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:51788048 original size:30 final size:29
Alignment explanation
Indices: 51788001--51788068 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 29
51787991 GCCTCAAGTA
51788001 GCCAAAGCTAGTTAAATCGCACACTTAGT
1 GCCAAAGCTAGTTAAATCGCACACTTAGT
*
51788030 GCCAAAGCTAGTTTAAATCGTACACTTAGT
1 GCCAAAGCTAG-TTAAATCGCACACTTAGT
51788060 GCCAAAGCT
1 GCCAAAGCT
51788069 TTCGATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 11 0.30
30 26 0.70
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (29 bp):
GCCAAAGCTAGTTAAATCGCACACTTAGT
Found at i:51792515 original size:40 final size:40
Alignment explanation
Indices: 51792417--51792679 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
51792407 TCCTCGTTCA
* * * * *
51792417 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
51792456 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51792496 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51792536 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
51792576 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
51792616 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
51792656 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51792680 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:51806092 original size:8 final size:8
Alignment explanation
Indices: 51806081--51806114 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
51806071 GACTCAATTT
51806081 ATCAAATC
1 ATCAAATC
51806089 ATCAAATC
1 ATCAAATC
51806097 ATCAAATC
1 ATCAAATC
*
51806105 ATCATATC
1 ATCAAATC
51806113 AT
1 AT
51806115 GTCGTTTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (8 bp):
ATCAAATC
Found at i:51808189 original size:28 final size:28
Alignment explanation
Indices: 51808158--51808216 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
51808148 CACACGGGCA
51808158 TGTCCCTCACACAGCCATGACACGCCCG
1 TGTCCCTCACACAGCCATGACACGCCCG
51808186 TGTCCCTCACACAGCCATGACACGCCCG
1 TGTCCCTCACACAGCCATGACACGCCCG
51808214 TGT
1 TGT
51808217 TTTAACCTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.20, C:0.44, G:0.19, T:0.17
Consensus pattern (28 bp):
TGTCCCTCACACAGCCATGACACGCCCG
Found at i:51809007 original size:16 final size:17
Alignment explanation
Indices: 51808981--51809012 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
51808971 AAATAAGAAA
51808981 TAATAATTATAATAATT
1 TAATAATTATAATAATT
51808998 TAATAA-TATAATAAT
1 TAATAATTATAATAAT
51809013 ATATATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATAATTATAATAATT
Found at i:51809125 original size:12 final size:12
Alignment explanation
Indices: 51809108--51809141 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
51809098 AGGGAATGAA
51809108 AGAAAGAAAAAG
1 AGAAAGAAAAAG
51809120 AGAAAGAAAAAG
1 AGAAAGAAAAAG
*
51809132 A-AAGGAAAAA
1 AGAAAGAAAAA
51809142 TAGGGTTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 8 0.38
12 13 0.62
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAG
Found at i:51810928 original size:20 final size:20
Alignment explanation
Indices: 51810903--51810947 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
51810893 GCCCCACGGC
*
51810903 CATGTCCCAGGGCACACAGG
1 CATGTCCCAGGCCACACAGG
* *
51810923 CATGTCCTAGGCCACACGGG
1 CATGTCCCAGGCCACACAGG
51810943 CATGT
1 CATGT
51810948 GCCCCTATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (20 bp):
CATGTCCCAGGCCACACAGG
Found at i:51813763 original size:40 final size:40
Alignment explanation
Indices: 51813697--51813961 Score: 374
Period size: 40 Copynumber: 6.7 Consensus size: 40
51813687 GGATATAACC
* * * * * *
51813697 ACTCGCAC-AAGGCCGTCGGGTCTTAGCCCAG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
51813736 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
51813776 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
51813816 ACTCGCACAAATGCCTTCGGGACTTAGTCCGAAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
51813856 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
51813896 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
51813936 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
51813962 ACCCCGTTAG
Statistics
Matches: 208, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 7 0.03
40 199 0.96
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:51819799 original size:25 final size:26
Alignment explanation
Indices: 51819759--51819810 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
51819749 ATGTTATAAT
51819759 AATAAAAGAATAAAGAAAACA-AAAGA
1 AATAAAAGAATAAAGAAAA-AGAAAGA
*
51819785 AATAAAA-CATAAAGAAAAAGAAAGA
1 AATAAAAGAATAAAGAAAAAGAAAGA
51819810 A
1 A
51819811 GAAAGGGACG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 16 0.67
26 7 0.29
ACGTcount: A:0.77, C:0.04, G:0.12, T:0.08
Consensus pattern (26 bp):
AATAAAAGAATAAAGAAAAAGAAAGA
Found at i:51825591 original size:26 final size:27
Alignment explanation
Indices: 51825562--51825621 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
51825552 CCACATATAT
* *
51825562 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGACACA
* *
51825588 ATATCTGTATCTGGTGACTTCGACACA
1 ATATCTGTATCTGGTGACCTAGACACA
51825615 ATATCTG
1 ATATCTG
51825622 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGACACA
Found at i:51838820 original size:15 final size:15
Alignment explanation
Indices: 51838800--51838838 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
51838790 AATCCCTAAC
*
51838800 ATAATAATAATTCAA
1 ATAATAATAATACAA
*
51838815 ATAATAATAATACTA
1 ATAATAATAATACAA
51838830 ATAATAATA
1 ATAATAATA
51838839 TTAATTATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAATAATAATACAA
Found at i:51849755 original size:55 final size:55
Alignment explanation
Indices: 51849639--51849760 Score: 122
Period size: 55 Copynumber: 2.2 Consensus size: 55
51849629 CTGCCAAAGC
* * * * *
51849639 AACACGGGCGTGCGACATGCCTGTGTGGAAGACCCGTGGTTGAAACTGAGAAACT
1 AACACGGGCGTGAGACATGCCCGTGTGCAAGACCCGTGATTGAAACTGACAAACT
* * * *
51849694 AGCACGGGCGTGAGACATGCCCGTGT-CCAGCACCCGTGATTG-AACATGTCAAATT
1 AACACGGGCGTGAGACATGCCCGTGTGCAAG-ACCCGTGATTGAAAC-TGACAAACT
*
51849749 AACACGGTCGTG
1 AACACGGGCGTG
51849761 CAACACGGCC
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
54 5 0.09
55 49 0.91
ACGTcount: A:0.26, C:0.25, G:0.30, T:0.19
Consensus pattern (55 bp):
AACACGGGCGTGAGACATGCCCGTGTGCAAGACCCGTGATTGAAACTGACAAACT
Found at i:51857331 original size:48 final size:48
Alignment explanation
Indices: 51857269--51858007 Score: 1230
Period size: 48 Copynumber: 15.4 Consensus size: 48
51857259 TATATATGTG
51857269 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
51857317 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
51857365 TGTGGTAAAACCGAATGGTTAATGTGAAATATGCATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
51857413 TGCGGTAAAGCCGAAAGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
51857461 TGAGGTAAAGCCGAATGACTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
51857509 CGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
51857557 CGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
51857605 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTACA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
51857653 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
51857701 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
51857749 TGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
51857797 TGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
51857845 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG--TA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
51857891 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
51857939 TGTGGTAAATCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
51857987 TATGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
51858008 GTGATTCGGC
Statistics
Matches: 654, Mismatches: 35, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 45 0.07
48 609 0.93
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:51860428 original size:30 final size:30
Alignment explanation
Indices: 51860393--51860458 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
51860383 GGGCATACCA
*
51860393 TGTGTCACACACAGCCTAGACACATTCTCG
1 TGTGTCACACACAGCCTAGACACATGCTCG
51860423 TGTGTCACACACAGCCTAGACACATGCTCG
1 TGTGTCACACACAGCCTAGACACATGCTCG
51860453 TGTGTC
1 TGTGTC
51860459 TAGTCGTGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (30 bp):
TGTGTCACACACAGCCTAGACACATGCTCG
Found at i:51861284 original size:49 final size:47
Alignment explanation
Indices: 51861227--51861391 Score: 165
Period size: 49 Copynumber: 3.5 Consensus size: 47
51861217 GTCGATGATG
* *
51861227 TGTCCCAGATAGGTCTTACACTGGCTCTCATTTATCTGTGCCGATGCCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCATTTATCTG-GCCGATG-CA
* * * *
51861276 TGTCCCAGACAGGTCTTACACTAGCT-T-GTATATCCCGAGGCCAATGCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCATTTAT--C-TGGCCGATGCA
* * * *
51861324 TGTCCCAGACATGTCTTACACTAGCACTCA-TGATGTGGCCGATGCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCATTTATCTGGCCGATGCA
*
51861370 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACAGGTCTTACACT
51861392 GGCTTACATA
Statistics
Matches: 97, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
46 31 0.32
47 4 0.04
48 27 0.28
49 34 0.35
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
TGTCCCAGACAGGTCTTACACTAGCTCTCATTTATCTGGCCGATGCA
Found at i:51872729 original size:7 final size:7
Alignment explanation
Indices: 51872717--51872741 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51872707 GTGGCCTAAG
51872717 TGTAAAA
1 TGTAAAA
51872724 TGTAAAA
1 TGTAAAA
51872731 TGTAAAA
1 TGTAAAA
51872738 TGTA
1 TGTA
51872742 CTATGTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (7 bp):
TGTAAAA
Found at i:51878477 original size:15 final size:15
Alignment explanation
Indices: 51878457--51878486 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51878447 CTTATTATCG
*
51878457 TATCTATAATGTATA
1 TATCTATAATATATA
51878472 TATCTATAATATATA
1 TATCTATAATATATA
51878487 AAAACATCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (15 bp):
TATCTATAATATATA
Found at i:51880506 original size:22 final size:20
Alignment explanation
Indices: 51880481--51880520 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
51880471 TCGGTTGATG
51880481 AATTGGTTATATATAATTGAGT
1 AATTGGTT-TATA-AATTGAGT
51880503 AATTGGTTTATAAATTGA
1 AATTGGTTTATAAATTGA
51880521 ATTGAGAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 4 0.22
22 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (20 bp):
AATTGGTTTATAAATTGAGT
Found at i:51883240 original size:46 final size:46
Alignment explanation
Indices: 51883190--51883362 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
51883180 TGGTTGAGCA
51883190 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51883236 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
51883281 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51883329 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51883363 GGGGTGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.55
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51883346 original size:93 final size:93
Alignment explanation
Indices: 51883187--51883357 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
51883177 GGATGGTTGA
* * *
51883187 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
51883252 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
51883280 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
51883345 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51883358 ACTTAGGGGT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51883624 original size:19 final size:20
Alignment explanation
Indices: 51883587--51883624 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
51883577 ATAAGGTGGT
51883587 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
51883607 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
51883625 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:51889064 original size:43 final size:43
Alignment explanation
Indices: 51889003--51889153 Score: 169
Period size: 43 Copynumber: 3.5 Consensus size: 43
51888993 TGGAAAAAAA
* * * * *
51889003 GCCGCTATAGAACATGACCCTTAGCAGTGCTTTTTCCACAAGC
1 GCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTACCACAAAC
* **
51889046 GCCGCTATAGAACATGACCTTTAGTGGCGC-TTTACCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTACCACAAAC
* * * * *
51889088 GTCACTAAAGAGCATGACCTTTAGCTGCGCTTTTCCCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTACCACAAAC
*
51889131 GCCGCTAAAGAACATGACTTTTA
1 GCCGCTAAAGAACATGACCTTTA
51889154 AAAAAATATT
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
42 34 0.38
43 56 0.62
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
GCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTACCACAAAC
Found at i:51892888 original size:21 final size:20
Alignment explanation
Indices: 51892864--51892915 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
51892854 TTATGCCACA
*
51892864 TCAGTATTCTTATTCTGAATT
1 TCAGTATT-TTATCCTGAATT
*
51892885 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
*
51892905 TTAGTATTTTA
1 TCAGTATTTTA
51892916 ATTTGGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.52
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:51893698 original size:25 final size:25
Alignment explanation
Indices: 51893670--51893720 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
51893660 GCATGGAGAA
51893670 GAGGAATGAAGTAGTGCATTAAAAG
1 GAGGAATGAAGTAGTGCATTAAAAG
51893695 GAGGAATGAAGTAGTGCATTAAAAG
1 GAGGAATGAAGTAGTGCATTAAAAG
51893720 G
1 G
51893721 CGTTTATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.04, G:0.33, T:0.20
Consensus pattern (25 bp):
GAGGAATGAAGTAGTGCATTAAAAG
Found at i:51900897 original size:27 final size:27
Alignment explanation
Indices: 51900867--51900920 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
51900857 TCCAACCGTC
*
51900867 GAGCCTCCACATAACGAGGGCTCACAT
1 GAGCCTCCACATAACGAGGGCCCACAT
* *
51900894 GAGCCTCCATATAACTAGGGCCCACAT
1 GAGCCTCCACATAACGAGGGCCCACAT
51900921 ACTTACCCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.33, G:0.20, T:0.17
Consensus pattern (27 bp):
GAGCCTCCACATAACGAGGGCCCACAT
Found at i:51904941 original size:27 final size:28
Alignment explanation
Indices: 51904888--51904945 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
51904878 GGGATTTCGG
* *
51904888 GGGGAAAAAAGAGTAAGGAGAAGAGGTT
1 GGGGAAAAAAGAGTAAGGAAAAAAGGTT
51904916 GGGGAAAAAAGCAG-AA-GAAAAAAGGTT
1 GGGGAAAAAAG-AGTAAGGAAAAAAGGTT
51904943 GGG
1 GGG
51904946 CTACAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 12 0.44
28 13 0.48
29 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.41, T:0.09
Consensus pattern (28 bp):
GGGGAAAAAAGAGTAAGGAAAAAAGGTT
Found at i:51905018 original size:23 final size:22
Alignment explanation
Indices: 51904992--51905051 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 22
51904982 GGGGAAAAAG
*
51904992 GGGGAAATGAAATTCAGAAGAA
1 GGGGAAATGAAATTCAAAAGAA
51905014 CGGGGAAATGAAATTCAAAAGAA
1 -GGGGAAATGAAATTCAAAAGAA
51905037 GGTGGAAATGAAATT
1 GG-GGAAATGAAATT
51905052 TTTCGGCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
22 2 0.06
23 33 0.94
ACGTcount: A:0.48, C:0.05, G:0.30, T:0.17
Consensus pattern (22 bp):
GGGGAAATGAAATTCAAAAGAA
Found at i:51905971 original size:7 final size:7
Alignment explanation
Indices: 51905959--51906060 Score: 55
Period size: 7 Copynumber: 14.4 Consensus size: 7
51905949 TTAAATAATT
51905959 TAAACCA
1 TAAACCA
51905966 TAAACCA
1 TAAACCA
*
51905973 TAATCCA
1 TAAACCA
* *
51905980 TAATCTA
1 TAAACCA
*
51905987 TAAACCT
1 TAAACCA
51905994 TAAA--A
1 TAAACCA
*
51905999 TAGTAACTCT
1 TA--AAC-CA
*
51906009 TAAACCT
1 TAAACCA
*
51906016 TAAACCC
1 TAAACCA
*
51906023 TAAACTA
1 TAAACCA
* *
51906030 TATACCC
1 TAAACCA
51906037 TAAACCA
1 TAAACCA
*
51906044 TAAACCC
1 TAAACCA
*
51906051 TAAACTA
1 TAAACCA
51906058 TAA
1 TAA
51906061 TGACAATTAA
Statistics
Matches: 72, Mismatches: 18, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
5 2 0.03
7 65 0.90
8 3 0.04
10 2 0.03
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.25
Consensus pattern (7 bp):
TAAACCA
Found at i:51906585 original size:40 final size:40
Alignment explanation
Indices: 51906529--51906697 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
51906519 TATATTTTTT
* * * * * *
51906529 GCGGCGTTTTTCAAAAAGCGCCGCTAGTGGTCGACCTATA
1 GCGGCATTTTTTAAAAAGCGCCACTAATGCTCGATCTATA
*
51906569 GCGGCATTTTTTAAAAAGCGCCACTAATGCTCCATCTATA
1 GCGGCATTTTTTAAAAAGCGCCACTAATGCTCGATCTATA
* *
51906609 GC-G-ATGTTTTTCAAAAAGCGCCGCTAATTCTCGATCTATA
1 GCGGCAT-TTTTT-AAAAAGCGCCACTAATGCTCGATCTATA
* * * *
51906649 GCAGCA-TCTTTCAATAGCGCCACTAATGCTCGATCTATA
1 GCGGCATTTTTTAAAAAGCGCCACTAATGCTCGATCTATA
*
51906688 GTGGCATTTT
1 GCGGCATTTT
51906698 CTATCCAAAC
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 34 0.32
40 68 0.64
41 1 0.01
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (40 bp):
GCGGCATTTTTTAAAAAGCGCCACTAATGCTCGATCTATA
Found at i:51910371 original size:49 final size:48
Alignment explanation
Indices: 51910247--51910379 Score: 144
Period size: 50 Copynumber: 2.7 Consensus size: 48
51910237 TATGAGATGT
* **
51910247 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAAATGA
* * * *
51910295 GAGCTAGTGTAATACCATGTCTAGGACATGGCGTCGGC-CTCGATGACAAT-A
1 G-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGAT-A-AATGA
51910346 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG
51910380 ACTTGAGACA
Statistics
Matches: 69, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
48 1 0.01
49 30 0.43
50 34 0.49
51 3 0.04
52 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (48 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAAATGA
Found at i:51911558 original size:20 final size:21
Alignment explanation
Indices: 51911520--51911558 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
51911510 TCTTAGTGAT
51911520 CACACGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
51911541 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
51911559 ATTTCAAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.31, T:0.21
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:51914788 original size:28 final size:28
Alignment explanation
Indices: 51914725--51914906 Score: 312
Period size: 28 Copynumber: 6.5 Consensus size: 28
51914715 ATATTAAGTC
* *
51914725 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
51914752 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
51914780 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
51914808 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
51914836 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
51914864 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
51914892 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51914907 GTACAATTTA
Statistics
Matches: 150, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
27 22 0.15
28 128 0.85
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:51925726 original size:68 final size:65
Alignment explanation
Indices: 51925511--51925761 Score: 224
Period size: 68 Copynumber: 3.8 Consensus size: 65
51925501 CATAATTTTG
* * * *
51925511 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCCATGTGACCTAGCCA-CTTTA-TCTCGT
1 GCTCTCTTGTACACATGGTGTACACATAGTATCA-CACATGCGACCTAGCTACCTCTATTCTCGT
51925574 A
65 A
** * * * * * *
51925575 GCTCTCTTGTTTACATGGTGTCCTTCACCTAGAACCACACATGCAACCTAGCTACATCTA-TCTC
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACACATGCGACCTAGCTACCTCTATTCTC
51925639 GTA
63 GTA
*
51925642 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACACATGCGACCTAGCTACCTC-T-AT-TCT
*
51925706 CATA
62 CGTA
* * * *
51925710 GCTCTCTTGTACACATGGTATACATCCT-GTATTACACATGTGACCTAGCTAC
1 GCTCTCTTGTACACATGGTGTACA-CATAGTATCACACATGCGACCTAGCTAC
51925762 ATACCATCTG
Statistics
Matches: 150, Mismatches: 26, Indels: 18
0.77 0.13 0.09
Matches are distributed among these distances:
64 46 0.31
65 1 0.01
66 14 0.09
67 38 0.25
68 48 0.32
69 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACACATGCGACCTAGCTACCTCTATTCTCGTA
Found at i:51928574 original size:46 final size:45
Alignment explanation
Indices: 51928513--51928694 Score: 190
Period size: 46 Copynumber: 3.9 Consensus size: 45
51928503 TTTGGGTCAC
* *
51928513 TTATGTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACA
1 TTATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CA
51928559 TTATGAGAGCCAGTGTAAGACAATGTCTGGGACATGGCATCGG--CA
1 TTATGAGAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCCA
* * **
51928604 TTGAGATGAGTGCTAGTGTAAGACATGTCTAAGACATGCATCGGCCTCA
1 TT---ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CA
** *
51928653 AGACGTAG-GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
1 TTATG-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
51928695 TAAGAGTTGT
Statistics
Matches: 115, Mismatches: 12, Indels: 18
0.79 0.08 0.12
Matches are distributed among these distances:
45 4 0.03
46 59 0.51
47 26 0.23
48 24 0.21
49 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
TTATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCA
Found at i:51930318 original size:49 final size:49
Alignment explanation
Indices: 51930191--51930382 Score: 197
Period size: 49 Copynumber: 3.9 Consensus size: 49
51930181 CTCAGTACCC
* * * *
51930191 AAATAAGATGGGCCACTGGTAAGGAATGTTAGTTTCTAACCAGAATGGC-
1 AAATAAGATAGGCCACTAGTAAGGCATGTTAGTTGCTAACCAG-ATGGCA
*** * ** * * * * *
51930240 GGTTATGATAAACCATTCGTAGGGTATGTTAGTTGCTAACCAGATGGGA
1 AAATAAGATAGGCCACTAGTAAGGCATGTTAGTTGCTAACCAGATGGCA
*
51930289 AAATAAGATAGGCCACTAGTAAGGCATGTTAGTTGCTAACCAGATGGCC
1 AAATAAGATAGGCCACTAGTAAGGCATGTTAGTTGCTAACCAGATGGCA
* * *
51930338 AAATAAGATGGGCCACTGGTAGGGCATGTTAGTTGCTAACCAGAT
1 AAATAAGATAGGCCACTAGTAAGGCATGTTAGTTGCTAACCAGAT
51930383 TGGCGTAAGT
Statistics
Matches: 114, Mismatches: 28, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
48 4 0.04
49 110 0.96
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (49 bp):
AAATAAGATAGGCCACTAGTAAGGCATGTTAGTTGCTAACCAGATGGCA
Found at i:51930360 original size:98 final size:98
Alignment explanation
Indices: 51930191--51930382 Score: 242
Period size: 98 Copynumber: 2.0 Consensus size: 98
51930181 CTCAGTACCC
* * * *** * *
51930191 AAATAAGATGGGCCACTGGTAAGGAATGTTAGTTTCTAACCAGAATGGCGGTTATGATAAACCAT
1 AAATAAGATAGGCCACTAGTAAGGAATGTTAGTTGCTAACCAGAATGGCAAATAAGATAAACCAC
*
51930256 TCGTAGGGTATGTTAGTTGCTAACCAGATGGGA
66 TCGTAGGGCATGTTAGTTGCTAACCAGATGGGA
* ***
51930289 AAATAAGATAGGCCACTAGTAAGGCATGTTAGTTGCTAACCAG-ATGGCCAAATAAGATGGGCCA
1 AAATAAGATAGGCCACTAGTAAGGAATGTTAGTTGCTAACCAGAATGG-CAAATAAGATAAACCA
*
51930353 CTGGTAGGGCATGTTAGTTGCTAACCAGAT
65 CTCGTAGGGCATGTTAGTTGCTAACCAGAT
51930383 TGGCGTAAGT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
97 4 0.05
98 75 0.95
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (98 bp):
AAATAAGATAGGCCACTAGTAAGGAATGTTAGTTGCTAACCAGAATGGCAAATAAGATAAACCAC
TCGTAGGGCATGTTAGTTGCTAACCAGATGGGA
Found at i:51931944 original size:49 final size:50
Alignment explanation
Indices: 51931855--51931952 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 50
51931845 ATGGTAGTTG
* ** *
51931855 TAATTCCTTTTGGGAAGAATATAATTTTTTTTAATACTTTCCATATGTTA
1 TAATTCCTTTTGGAAAGAATATAATCGTGTTTAATACTTTCCATATGTTA
* *
51931905 TAATTCTTTTTGGAAAGAATATAA-CGTGTTTAATGCTTTCCATATGTT
1 TAATTCCTTTTGGAAAGAATATAATCGTGTTTAATACTTTCCATATGTT
51931953 CTTTATAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 20 0.48
50 22 0.52
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.48
Consensus pattern (50 bp):
TAATTCCTTTTGGAAAGAATATAATCGTGTTTAATACTTTCCATATGTTA
Found at i:51933844 original size:19 final size:20
Alignment explanation
Indices: 51933812--51933877 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
51933802 AAAAAAAAAA
51933812 TCAAAATAATTTTTAAAATT
1 TCAAAATAATTTTTAAAATT
51933832 TCAAAATAATTTTTAAAA-T
1 TCAAAATAATTTTTAAAATT
*
51933851 TCAAAAT-ATTTATAAAAATT
1 TCAAAATAATTT-TTAAAATT
51933871 TCAAAAT
1 TCAAAAT
51933878 TTATATATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
18 4 0.09
19 13 0.30
20 26 0.60
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (20 bp):
TCAAAATAATTTTTAAAATT
Found at i:51933879 original size:18 final size:18
Alignment explanation
Indices: 51933826--51933882 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 18
51933816 AATAATTTTT
* *
51933826 AAAATTTCAAAATAATTTTT
1 AAAATTTCAAAAT--TTATA
51933846 AAAA-TTCAAAATATTTATA
1 AAAATTTC-AAA-ATTTATA
51933865 AAAATTTCAAAATTTATA
1 AAAATTTCAAAATTTATA
51933883 TATTTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
18 7 0.22
19 13 0.41
20 10 0.31
21 2 0.06
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAATTTCAAAATTTATA
Found at i:51933896 original size:20 final size:21
Alignment explanation
Indices: 51933853--51933937 Score: 65
Period size: 20 Copynumber: 4.2 Consensus size: 21
51933843 TTTAAAATTC
*
51933853 AAAATATTTATAAAAA-TTT-
1 AAAAAATTTATAAAAATTTTA
* * *
51933872 -CAAAATTTAT-ATATTTTTA
1 AAAAAATTTATAAAAATTTTA
51933891 AAAAAA-TTATAAAAATTTTA
1 AAAAAATTTATAAAAATTTTA
*
51933911 AAAAAATTCTA-AAAAATATATA
1 AAAAAATT-TATAAAAAT-TTTA
51933933 AAAAA
1 AAAAA
51933938 GTTAAAATTT
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
17 2 0.04
18 11 0.22
19 4 0.08
20 17 0.33
21 7 0.14
22 10 0.20
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAAAATTTATAAAAATTTTA
Found at i:51933904 original size:10 final size:10
Alignment explanation
Indices: 51933891--51933937 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
51933881 TATATTTTTA
51933891 AAAAAATTAT
1 AAAAAATTAT
*
51933901 -AAAAATTTT
1 AAAAAATTAT
*
51933910 AAAAAAATTCT
1 -AAAAAATTAT
51933921 AAAAAATATAT
1 AAAAAAT-TAT
51933932 AAAAAA
1 AAAAAA
51933938 GTTAAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.26
10 7 0.23
11 16 0.52
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:51933943 original size:20 final size:19
Alignment explanation
Indices: 51933889--51933944 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 19
51933879 TATATATTTT
*
51933889 TAAAAAAATTATAAAAATTT
1 TAAAAAAATTA-AAAAATTA
51933909 TAAAAAAATTCTAAAAAATATA
1 TAAAAAAA-T-TAAAAAAT-TA
*
51933931 TAAAAAAGTTAAAA
1 TAAAAAAATTAAAA
51933945 TTTTAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 13 0.42
21 8 0.26
22 10 0.32
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
TAAAAAAATTAAAAAATTA
Found at i:51936601 original size:18 final size:18
Alignment explanation
Indices: 51936574--51936611 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
51936564 CATATCATGA
*
51936574 TGATTTTGGTGGATTTGG
1 TGATTATGGTGGATTTGG
*
51936592 TGATTATGGTGGCTTTGG
1 TGATTATGGTGGATTTGG
51936610 TG
1 TG
51936612 GTGGTGCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.39, T:0.47
Consensus pattern (18 bp):
TGATTATGGTGGATTTGG
Found at i:51938930 original size:22 final size:23
Alignment explanation
Indices: 51938896--51938938 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
51938886 AATGTGGAAG
*
51938896 GATCTAAGTTTTAAGTATGTTAA
1 GATCTAAGTTTTAAATATGTTAA
51938919 GATCTAAG-TTTAAATATGTT
1 GATCTAAGTTTTAAATATGTT
51938939 GAAGTGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (23 bp):
GATCTAAGTTTTAAATATGTTAA
Found at i:51940305 original size:22 final size:21
Alignment explanation
Indices: 51940274--51940314 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
51940264 CTCTTAACAT
**
51940274 AGGGGAACACGTCCGTGTGGG
1 AGGGGAACACACCCGTGTGGG
51940295 AGGGGCAACACACCCGTGTG
1 AGGGG-AACACACCCGTGTG
51940315 ACATTTCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.22, C:0.24, G:0.41, T:0.12
Consensus pattern (21 bp):
AGGGGAACACACCCGTGTGGG
Found at i:51944644 original size:47 final size:47
Alignment explanation
Indices: 51944592--51945137 Score: 880
Period size: 47 Copynumber: 11.6 Consensus size: 47
51944582 GATAATTGTG
* *
51944592 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51944639 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51944686 ATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51944733 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51944780 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51944827 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51944874 ATGTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51944923 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51944970 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51945019 ATGTGAAAGTGTATATATATGATAAGG-CTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
51945065 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
51945112 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
51945138 TCCCGAAGGG
Statistics
Matches: 466, Mismatches: 26, Indels: 13
0.92 0.05 0.03
Matches are distributed among these distances:
45 2 0.00
46 40 0.09
47 331 0.71
48 2 0.00
49 91 0.20
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:51947334 original size:38 final size:38
Alignment explanation
Indices: 51947270--51947342 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
51947260 AATCCGAGTT
*
51947270 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCTGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCTGG
* *
51947308 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCC
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCC
51947343 GGATTAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCTGG
Done.