Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 177 of 295
Found at i:56086643 original size:16 final size:16
Alignment explanation
Indices: 56086622--56086664 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
56086612 ATGTATCGGC
*
56086622 AAAAGCAGAAATGCCG
1 AAAAGCAGAAACGCCG
*
56086638 AAAAGCTGAAACGCCG
1 AAAAGCAGAAACGCCG
*
56086654 AAAAGCCGAAA
1 AAAAGCAGAAA
56086665 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.21, G:0.23, T:0.05
Consensus pattern (16 bp):
AAAAGCAGAAACGCCG
Found at i:56086648 original size:8 final size:8
Alignment explanation
Indices: 56086622--56086664 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
56086612 ATGTATCGGC
*
56086622 AAAAGCAG
1 AAAAGCCG
*
56086630 AAATGCCG
1 AAAAGCCG
*
56086638 AAAAGCTG
1 AAAAGCCG
*
56086646 AAACGCCG
1 AAAAGCCG
56086654 AAAAGCCG
1 AAAAGCCG
56086662 AAA
1 AAA
56086665 GTTTGGCTAC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.51, C:0.21, G:0.23, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:56095175 original size:40 final size:40
Alignment explanation
Indices: 56094954--56095177 Score: 202
Period size: 40 Copynumber: 5.5 Consensus size: 40
56094944 GAATTCTTGT
* * * * *
56094954 ACACTAAGTGTCAATACATAGCTGAAGCTAT-TTTAATCTCAC
1 ACACTAAGTG-CCATATATAGCCGAAGCTATCTTGAA--TCGC
** * * * *
56094996 ACACTAAGTGCGTTATATATCCGTAGCTATCTCGAATCAC
1 ACACTAAGTGCCATATATAGCCGAAGCTATCTTGAATCGC
* ** * *
56095036 GCACTAAGTGTTATACATAGCCAAAGCTATCTTGAATCGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATCTTGAATCGC
* *
56095076 ACATTAAGTGCCATACATAGCCGAAGCTATCTTG-ATCTTGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATCTTGAATC--GC
56095117 ACACTAAGTGCCATATATAGCCGAAGCTAT-TTCGAATCGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATCTT-GAATCGC
*
56095157 ACACTAAGTGCCACATATAGC
1 ACACTAAGTGCCATATATAGC
56095178 TGATTTGTCA
Statistics
Matches: 151, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.02
40 87 0.58
41 45 0.30
42 16 0.11
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (40 bp):
ACACTAAGTGCCATATATAGCCGAAGCTATCTTGAATCGC
Found at i:56095438 original size:14 final size:15
Alignment explanation
Indices: 56095419--56095462 Score: 63
Period size: 14 Copynumber: 2.9 Consensus size: 15
56095409 ATTTAGCCTA
56095419 AAATTTACAATTTT-
1 AAATTTACAATTTTC
56095433 AAATTTACAATTTTGC
1 AAATTTACAATTTT-C
56095449 AAATTTACACATTT
1 AAATTTACA-ATTT
56095463 GCCCCTAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.52
16 9 0.33
17 4 0.15
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.45
Consensus pattern (15 bp):
AAATTTACAATTTTC
Found at i:56095463 original size:16 final size:15
Alignment explanation
Indices: 56095419--56095464 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
56095409 ATTTAGCCTA
*
56095419 AAATTTACAATTT-T
1 AAATTTACAATTTGC
56095433 AAATTTACAATTTTGC
1 AAATTTACAA-TTTGC
56095449 AAATTTACACATTTGC
1 AAATTTACA-ATTTGC
56095465 CCCTAATGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 10 0.36
15 3 0.11
16 14 0.50
17 1 0.04
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.43
Consensus pattern (15 bp):
AAATTTACAATTTGC
Found at i:56098163 original size:16 final size:17
Alignment explanation
Indices: 56098136--56098167 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
56098126 ACATTAGGGG
56098136 CAAATGTGTAAATTTTC
1 CAAATGTGTAAATTTTC
56098153 CAAAT-TGTAAATTTT
1 CAAATGTGTAAATTTT
56098168 AGGCTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (17 bp):
CAAATGTGTAAATTTTC
Found at i:56099558 original size:28 final size:28
Alignment explanation
Indices: 56099518--56099614 Score: 85
Period size: 28 Copynumber: 3.5 Consensus size: 28
56099508 ATAATTTTGC
*
56099518 GCACACACAGTGCCTTACACCCGATCTT
1 GCACACATAGTGCCTTACACCCGATCTT
**
56099546 GCACACATAGTGCTCGGTTA-A--TAAT-TT
1 GCACACATAGTGC-C--TTACACCCGATCTT
* *
56099573 CACACACATAGTGCCTTACACCCGATCTC
1 -GCACACATAGTGCCTTACACCCGATCTT
56099602 GCACACATAGTGC
1 GCACACATAGTGC
56099615 ATATATTCAT
Statistics
Matches: 53, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 3 0.06
28 40 0.75
29 2 0.04
30 1 0.02
31 3 0.06
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (28 bp):
GCACACATAGTGCCTTACACCCGATCTT
Found at i:56107175 original size:28 final size:28
Alignment explanation
Indices: 56107144--56107238 Score: 106
Period size: 28 Copynumber: 3.4 Consensus size: 28
56107134 TAATTTTGCA
* *
56107144 CACACACAGTGCCTTACACTCGATCTCG
1 CACACATAGTGCCTTACACTCGATTTCG
*
56107172 CACACATAGTGCTCGGTTA-A-T-AATTTCG
1 CACACATAGTGC-C--TTACACTCGATTTCG
*
56107200 CACACATAGTGCCTTACACCCGATTTCG
1 CACACATAGTGCCTTACACTCGATTTCG
56107228 CACACATAGTG
1 CACACATAGTG
56107239 TTCGGTTACT
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 1 0.02
28 45 0.80
29 2 0.04
30 1 0.02
31 3 0.05
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (28 bp):
CACACATAGTGCCTTACACTCGATTTCG
Found at i:56107229 original size:56 final size:56
Alignment explanation
Indices: 56107144--56107264 Score: 188
Period size: 56 Copynumber: 2.2 Consensus size: 56
56107134 TAATTTTGCA
* * *
56107144 CACACACAGTGCCTTACACTCGATCTCGCACACATAGTGCTCGGTTAATAATTTCG
1 CACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTAATAATCTCG
* * *
56107200 CACACATAGTGCCTTACACCCGATTTCGCACACATAGTGTTCGGTTACTAATCTCG
1 CACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTAATAATCTCG
56107256 CACACATAG
1 CACACATAG
56107265 AGCATATATT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (56 bp):
CACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGGTTAATAATCTCG
Found at i:56107256 original size:28 final size:27
Alignment explanation
Indices: 56107166--56107264 Score: 87
Period size: 28 Copynumber: 3.6 Consensus size: 27
56107156 CTTACACTCG
*
56107166 ATCTCGCACACATAGTGCTCGGTTAATA
1 ATCTCGCACACATAGTG-TCGGTTACTA
* *
56107194 ATTTCGCACACATAGTG-C-CTTAC-A
1 ATCTCGCACACATAGTGTCGGTTACTA
*
56107218 CCCGATTTCGCACACATAGTGTTCGGTTACTA
1 ----ATCTCGCACACATAGTG-TCGGTTACTA
56107250 ATCTCGCACACATAG
1 ATCTCGCACACATAG
56107265 AGCATATATT
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
24 1 0.02
25 3 0.05
26 1 0.02
28 47 0.81
30 1 0.02
31 4 0.07
32 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
ATCTCGCACACATAGTGTCGGTTACTA
Found at i:56108982 original size:40 final size:40
Alignment explanation
Indices: 56108919--56109047 Score: 134
Period size: 40 Copynumber: 3.2 Consensus size: 40
56108909 TGTCACATAT
*
56108919 TGTGCGATTCAAGATAGCGTTGGCTATGTATGGCACTTAG
1 TGTGCGATTCAAGATAGCTTTGGCTATGTATGGCACTTAG
* * * *
56108959 TGTGCGATTCCAGATCGCTTTGGCTATATATAGCACTTAG
1 TGTGCGATTCAAGATAGCTTTGGCTATGTATGGCACTTAG
* ** **
56108999 TGTGTGATATTGTA-ATAGCTTCAGCTATGTATTGGCACTTAG
1 TGTGCG--ATTCAAGATAGCTTTGGCTATGTA-TGGCACTTAG
56109041 TGTGCGA
1 TGTGCGA
56109048 GAATTCGAGT
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
40 41 0.57
41 13 0.18
42 18 0.25
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (40 bp):
TGTGCGATTCAAGATAGCTTTGGCTATGTATGGCACTTAG
Found at i:56112748 original size:38 final size:39
Alignment explanation
Indices: 56112635--56112866 Score: 290
Period size: 39 Copynumber: 6.0 Consensus size: 39
56112625 CAAATTCAAT
* * * *
56112635 CACCACCAC-AATGCATGCGGGACTTTAAGCCCGGATCTAA
1 CACCAGCACGAATGCCTTCGGGAC-TT-AGCCCGGATATAA
* * * * *
56112675 TACCAGCA-TAAAGCCTTCGGGACTTAACCCAGATATAA
1 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
56112713 CACCAGCACGAATGCCTTCGGGACTTA-CCCGGATATAA
1 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
* *
56112751 CACCAGCACGAATGCCTTCAGGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
*
56112790 CACCAGCACGAATGCCTTCGGGACTTAGCCCGAATATAA
1 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
* * *
56112829 CACCAGCACAAACGCCTTCGGGAATTAGCCCGGATATA
1 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATA
56112867 TATCTCACAC
Statistics
Matches: 168, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
38 53 0.32
39 98 0.58
40 17 0.10
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.18
Consensus pattern (39 bp):
CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
Found at i:56112784 original size:77 final size:78
Alignment explanation
Indices: 56112635--56112866 Score: 299
Period size: 77 Copynumber: 3.0 Consensus size: 78
56112625 CAAATTCAAT
* * * * * *
56112635 CACCACCAC-AATGCATGCGGGACTTTAAGCCCGGATCTAATACCAGCA-TAAAGCCTTCGGGAC
1 CACCAGCACGAATGCCTTCGGGAC-TT-AGCCCGGATATAACACCAGCACAAAAGCCTTCGGGAC
*
56112698 TTAACCCAGATATAA
64 TTAGCCCAGATATAA
* * *
56112713 CACCAGCACGAATGCCTTCGGGACTTA-CCCGGATATAACACCAGCACGAATGCCTTCAGGACTT
1 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAAAGCCTTCGGGACTT
56112777 AGCCCAGATATAA
66 AGCCCAGATATAA
* * *
56112790 CACCAGCACGAATGCCTTCGGGACTTAGCCCGAATATAACACCAGCACAAACGCCTTCGGGAATT
1 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAAAGCCTTCGGGACTT
*
56112855 AGCCCGGATATA
66 AGCCCAGATATA
56112867 TATCTCACAC
Statistics
Matches: 136, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
76 17 0.12
77 54 0.40
78 53 0.39
79 12 0.09
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.18
Consensus pattern (78 bp):
CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAAAGCCTTCGGGACTT
AGCCCAGATATAA
Found at i:56115987 original size:53 final size:54
Alignment explanation
Indices: 56115902--56116108 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
56115892 TTCCCTTTCA
* *
56115902 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * **
56115955 AACTCACCATTGCAATGCCTTGGCATGGTCTTACATGGGATTTTTGCCTTATAG
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
56116009 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
56116064 AACTTACCAATT-CCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACC-ATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
56116109 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 44 0.37
54 34 0.29
55 41 0.34
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:56119342 original size:44 final size:44
Alignment explanation
Indices: 56119279--56119366 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
56119269 CTCTCAAAAA
56119279 CTGTAAAACTATTCTCAAATGCTCTGAATGCTCAGTCTTTTCAT
1 CTGTAAAACTATTCTCAAATGCTCTGAATGCTCAGTCTTTTCAT
56119323 CTGTAAAA-TCATTCTCAAATGCTCTGAATGCTCAGTCTTTTCAT
1 CTGTAAAACT-ATTCTCAAATGCTCTGAATGCTCAGTCTTTTCAT
56119367 GAGAATAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 1 0.02
44 42 0.98
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (44 bp):
CTGTAAAACTATTCTCAAATGCTCTGAATGCTCAGTCTTTTCAT
Found at i:56123151 original size:55 final size:53
Alignment explanation
Indices: 56122994--56123202 Score: 229
Period size: 53 Copynumber: 3.9 Consensus size: 53
56122984 CTTTCCTTTT
* * **
56122994 TGAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTA
1 TGAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * * * *
56123047 TGAACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTA
1 TGAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
** * * * * *
56123100 TCGTAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTG
1 T-G-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* *
56123155 TGAAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TG-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
56123203 AAACCCCAAT
Statistics
Matches: 126, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 47 0.37
54 39 0.31
55 40 0.32
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (53 bp):
TGAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:56137918 original size:1 final size:1
Alignment explanation
Indices: 56137914--56137945 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
56137904 CACCATACAT
56137914 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
56137946 TCAGCCACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:56148247 original size:1 final size:1
Alignment explanation
Indices: 56148241--56148269 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
56148231 ACATTCATCT
56148241 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
56148270 TTATTCAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:56148282 original size:1 final size:1
Alignment explanation
Indices: 56148278--56148302 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
56148268 AATTATTCAA
56148278 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
56148303 CTATATACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:56150819 original size:17 final size:17
Alignment explanation
Indices: 56150797--56150830 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
56150787 ATAGATTCGC
*
56150797 TTAGATATACTTAGTAT
1 TTAGATATAATTAGTAT
56150814 TTAGATATAATTAGTAT
1 TTAGATATAATTAGTAT
56150831 AATATACGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (17 bp):
TTAGATATAATTAGTAT
Found at i:56152415 original size:8 final size:8
Alignment explanation
Indices: 56152402--56152427 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
56152392 TGTGCTCCTT
56152402 AAGAACTA
1 AAGAACTA
56152410 AAGAACTA
1 AAGAACTA
56152418 AAGAACTA
1 AAGAACTA
56152426 AA
1 AA
56152428 CAAGTGGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.12, G:0.12, T:0.12
Consensus pattern (8 bp):
AAGAACTA
Found at i:56158089 original size:13 final size:13
Alignment explanation
Indices: 56158058--56158091 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
56158048 TTTTAATTTC
56158058 AATTT-ATTTAAT
1 AATTTAATTTAAT
56158070 AATTTTAATTTAAT
1 AA-TTTAATTTAAT
56158084 AATTTAAT
1 AATTTAAT
56158092 CCAAGGAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 2 0.10
13 9 0.45
14 9 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTTAATTTAAT
Found at i:56159862 original size:24 final size:23
Alignment explanation
Indices: 56159806--56159875 Score: 65
Period size: 25 Copynumber: 3.0 Consensus size: 23
56159796 ATTTTCTTTC
56159806 TATAT-TATTAATATTATTTATT
1 TATATATATTAATATTATTTATT
*
56159828 TAAATATTATTAATA-TATTTAAATT
1 TATATA-TATTAATATTATTT--ATT
*
56159853 TATATATATTTAA-ATTATATATT
1 TATATATA-TTAATATTATTTATT
56159876 GAAATGATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
22 4 0.10
23 8 0.21
24 11 0.28
25 16 0.41
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TATATATATTAATATTATTTATT
Found at i:56159872 original size:15 final size:15
Alignment explanation
Indices: 56159836--56159874 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
56159826 TTTAAATATT
56159836 ATTA-ATATATTTAA
1 ATTATATATATTTAA
56159850 ATTTATATATATTTAA
1 A-TTATATATATTTAA
56159866 ATTATATAT
1 ATTATATAT
56159875 TGAAATGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.04
15 11 0.48
16 11 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATATATATTTAA
Found at i:56160087 original size:21 final size:21
Alignment explanation
Indices: 56160047--56160085 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
56160037 AAATCATGGA
56160047 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
56160068 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
56160086 TCGTAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:56162623 original size:12 final size:12
Alignment explanation
Indices: 56162606--56162630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
56162596 ATTTTATAAC
56162606 ATAAATATTGTT
1 ATAAATATTGTT
56162618 ATAAATATTGTT
1 ATAAATATTGTT
56162630 A
1 A
56162631 ATAGCCTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:56164099 original size:1 final size:1
Alignment explanation
Indices: 56164095--56164150 Score: 112
Period size: 1 Copynumber: 56.0 Consensus size: 1
56164085 TCGAAAAAGG
56164095 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
56164151 TAAATTCTAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:56174662 original size:15 final size:15
Alignment explanation
Indices: 56174644--56174689 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
56174634 ACACGTGCTT
56174644 GTGTGACACACGAGCG
1 GTGTGACACACG-GCG
56174660 TGTGTGACACACGGCG
1 -GTGTGACACACGGCG
*
56174676 TGTGTGACATACGG
1 -GTGTGACACACGG
56174690 TCTGCCCGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 16 0.57
17 12 0.43
ACGTcount: A:0.22, C:0.22, G:0.37, T:0.20
Consensus pattern (15 bp):
GTGTGACACACGGCG
Found at i:56174678 original size:16 final size:17
Alignment explanation
Indices: 56174631--56174684 Score: 83
Period size: 17 Copynumber: 3.2 Consensus size: 17
56174621 CACACGGGCA
* *
56174631 GACACACGTGCTTGTGT
1 GACACACGAGCGTGTGT
56174648 GACACACGAGCGTGTGT
1 GACACACGAGCGTGTGT
56174665 GACACACG-GCGTGTGT
1 GACACACGAGCGTGTGT
56174681 GACA
1 GACA
56174685 TACGGTCTGC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
16 12 0.34
17 23 0.66
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.20
Consensus pattern (17 bp):
GACACACGAGCGTGTGT
Found at i:56186590 original size:47 final size:47
Alignment explanation
Indices: 56186539--56186901 Score: 586
Period size: 47 Copynumber: 7.7 Consensus size: 47
56186529 TTAGGATTCT
* * *
56186539 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
56186586 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
56186633 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
56186680 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
56186727 ATGTGACGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
56186773 ATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
56186820 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
56186867 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
56186902 TCCCGAAGGG
Statistics
Matches: 299, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 47 0.16
47 252 0.84
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:56186793 original size:187 final size:188
Alignment explanation
Indices: 56186560--56186901 Score: 587
Period size: 187 Copynumber: 1.8 Consensus size: 188
56186550 GTGAACATGC
*
56186560 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGAGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * *
56186625 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
*
56186690 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGT
131 TGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGT
*
56186748 ATATATGTGATAAGG-CTAATGGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGAGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * *
56186812 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
56186877 TGTGAAAGTGTATAAATGTGATAAG
131 TGTGAAAGTGTATAAATGTGATAAG
56186902 TCCCGAAGGG
Statistics
Matches: 144, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
187 130 0.90
188 14 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (188 bp):
ATATATGAGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
TGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGT
Found at i:56187076 original size:37 final size:37
Alignment explanation
Indices: 56187020--56187098 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
56187010 CCGAGCTCTA
* * *
56187020 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
56187057 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
56187094 AAGAC
1 AAGAC
56187099 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:56189183 original size:40 final size:40
Alignment explanation
Indices: 56188953--56189268 Score: 270
Period size: 40 Copynumber: 7.9 Consensus size: 40
56188943 TCGAATGATG
* *
56188953 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCT-AGTGACTATA
* * * *
56188993 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCTAGTGACTATA
* * * *
56189032 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACTATA
* * *
56189072 TCCGGGTTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCT-AGTGACTATA
* * *
56189112 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGACTATA
*
56189152 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATA
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGACTATA
* ** * *
56189192 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTG-TTATA
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGACTATA
* * * *
56189232 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGAC
56189269 GTGTATTCGG
Statistics
Matches: 233, Mismatches: 32, Indels: 21
0.81 0.11 0.07
Matches are distributed among these distances:
39 35 0.15
40 178 0.76
41 19 0.08
42 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACTATA
Found at i:56192194 original size:47 final size:47
Alignment explanation
Indices: 56192143--56192506 Score: 595
Period size: 47 Copynumber: 7.7 Consensus size: 47
56192133 TTAGGATTCT
* * *
56192143 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
56192190 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
56192237 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
56192284 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
56192331 ATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
56192378 ATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
56192425 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
56192472 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
56192507 TCCCGAAGGG
Statistics
Matches: 301, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 300 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:56192681 original size:37 final size:37
Alignment explanation
Indices: 56192625--56192703 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
56192615 CCTAGCTCTA
* * *
56192625 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
56192662 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
56192699 AAGAC
1 AAGAC
56192704 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:56196442 original size:20 final size:20
Alignment explanation
Indices: 56196387--56196444 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
56196377 TGAGCTGAAA
*
56196387 TTGAGCTGGATGTGAACTTG
1 TTGAGCTGGATGTGAGCTTG
* **
56196407 TTAAGCTGGAACTGAGCTTG
1 TTGAGCTGGATGTGAGCTTG
*
56196427 TTGAGCTGGTTGTGAGCT
1 TTGAGCTGGATGTGAGCT
56196445 GGACAAGCTA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.19, C:0.12, G:0.34, T:0.34
Consensus pattern (20 bp):
TTGAGCTGGATGTGAGCTTG
Found at i:56200429 original size:20 final size:20
Alignment explanation
Indices: 56200390--56200434 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
56200380 TGAGCTGAAA
**
56200390 TTGAGCTGGATGTGAACTTG
1 TTGAGCTGGAACTGAACTTG
*
56200410 TTGAGCTGGAACTGAGCTTG
1 TTGAGCTGGAACTGAACTTG
*
56200430 CTGAG
1 TTGAG
56200435 ATGGTTGTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.13, G:0.36, T:0.31
Consensus pattern (20 bp):
TTGAGCTGGAACTGAACTTG
Found at i:56202287 original size:3 final size:3
Alignment explanation
Indices: 56202281--56202306 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
56202271 TATTTACTTT
56202281 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
56202307 CCTACGAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:56202966 original size:15 final size:15
Alignment explanation
Indices: 56202946--56202977 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
56202936 ATGAATATTC
*
56202946 TAAAATTTATTAAAT
1 TAAAATTAATTAAAT
56202961 TAAAATTAATTAAAT
1 TAAAATTAATTAAAT
56202976 TA
1 TA
56202978 TATCCCACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAAATTAATTAAAT
Found at i:56205887 original size:16 final size:16
Alignment explanation
Indices: 56205866--56205933 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
56205856 TTTGGTTCGC
56205866 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
56205882 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
56205898 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
*
56205914 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
56205930 TGTA
1 TGTA
56205934 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:56205973 original size:45 final size:41
Alignment explanation
Indices: 56205914--56206023 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 41
56205904 GGATTAGAGG
*
56205914 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
56205956 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
56205999 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
56206024 TAATGGAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.39
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:56206186 original size:16 final size:16
Alignment explanation
Indices: 56206149--56206190 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
56206139 TTAATCATAT
*
56206149 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
56206165 TT-AAATATATTATAA
1 TTAAAATATATTATAA
56206180 TTAAAATATAT
1 TTAAAATATAT
56206191 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:56206197 original size:14 final size:15
Alignment explanation
Indices: 56206158--56206199 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
56206148 TTTAAACATA
*
56206158 ATTATTATTAAATAT
1 ATTATAATTAAATAT
56206173 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
56206187 A-TATAATTTAATA
1 ATTATAATTAAATA
56206200 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:56206249 original size:61 final size:61
Alignment explanation
Indices: 56206184--56206371 Score: 215
Period size: 61 Copynumber: 3.1 Consensus size: 61
56206174 TTATAATTAA
56206184 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * * *
56206245 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATATTAAAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCAAATCAT
56206304 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
56206365 AATATAT
1 AATATAT
56206372 GATACTATAA
Statistics
Matches: 97, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
58 1 0.01
59 32 0.33
60 24 0.25
61 39 0.40
62 1 0.01
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:56206302 original size:120 final size:120
Alignment explanation
Indices: 56206152--56206381 Score: 451
Period size: 120 Copynumber: 1.9 Consensus size: 120
56206142 ATCATATTTA
*
56206152 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTAAAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
56206217 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
56206272 AACATAATTATTATTAAATATATTAAAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTAAAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
56206337 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
56206382 TTTACTCAAA
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 109 1.00
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTAAAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:56206370 original size:59 final size:59
Alignment explanation
Indices: 56206187--56206370 Score: 180
Period size: 59 Copynumber: 3.1 Consensus size: 59
56206177 TAATTAAAAT
56206187 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
* * * * * * * * * *
56206246 ATAT-ATGATACTATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATATTAAAATTAAAA
1 ATATAAT-TTA--ATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCAAA-TCATA
56206306 TATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 -ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
56206366 ATATA
1 ATATA
56206371 TGATACTATA
Statistics
Matches: 93, Mismatches: 20, Indels: 24
0.68 0.15 0.18
Matches are distributed among these distances:
58 2 0.02
59 32 0.34
60 30 0.32
61 27 0.29
62 2 0.02
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
Found at i:56224221 original size:13 final size:13
Alignment explanation
Indices: 56224168--56224219 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
56224158 TTCAAATATT
*
56224168 TATTAATAATAAA
1 TATTATTAATAAA
*
56224181 CATTATTGAA-AAA
1 TATTATT-AATAAA
*
56224194 TATTATTATTAAA
1 TATTATTAATAAA
56224207 TATTCATTAATAA
1 TATT-ATTAATAA
56224220 TAAAATGGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
12 1 0.03
13 21 0.68
14 9 0.29
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (13 bp):
TATTATTAATAAA
Found at i:56224432 original size:7 final size:8
Alignment explanation
Indices: 56224412--56224436 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
56224402 TTTCAATATT
56224412 TAAAAATA
1 TAAAAATA
56224420 TAAAAATA
1 TAAAAATA
56224428 TAAAAATA
1 TAAAAATA
56224436 T
1 T
56224437 TTTTAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
TAAAAATA
Found at i:56226870 original size:94 final size:94
Alignment explanation
Indices: 56226751--56227032 Score: 564
Period size: 94 Copynumber: 3.0 Consensus size: 94
56226741 ATCCATTCCC
56226751 TGCTAAACAACTGACTGCATTTATTCATATTCATACACCTAACTGTTCAAAGCTAGGTTATGTTT
1 TGCTAAACAACTGACTGCATTTATTCATATTCATACACCTAACTGTTCAAAGCTAGGTTATGTTT
56226816 CTGTTCAATCAAAGAATCCATAGTGTTGA
66 CTGTTCAATCAAAGAATCCATAGTGTTGA
56226845 TGCTAAACAACTGACTGCATTTATTCATATTCATACACCTAACTGTTCAAAGCTAGGTTATGTTT
1 TGCTAAACAACTGACTGCATTTATTCATATTCATACACCTAACTGTTCAAAGCTAGGTTATGTTT
56226910 CTGTTCAATCAAAGAATCCATAGTGTTGA
66 CTGTTCAATCAAAGAATCCATAGTGTTGA
56226939 TGCTAAACAACTGACTGCATTTATTCATATTCATACACCTAACTGTTCAAAGCTAGGTTATGTTT
1 TGCTAAACAACTGACTGCATTTATTCATATTCATACACCTAACTGTTCAAAGCTAGGTTATGTTT
56227004 CTGTTCAATCAAAGAATCCATAGTGTTGA
66 CTGTTCAATCAAAGAATCCATAGTGTTGA
56227033 ATGACAGGAG
Statistics
Matches: 188, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 188 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (94 bp):
TGCTAAACAACTGACTGCATTTATTCATATTCATACACCTAACTGTTCAAAGCTAGGTTATGTTT
CTGTTCAATCAAAGAATCCATAGTGTTGA
Found at i:56232025 original size:31 final size:31
Alignment explanation
Indices: 56231953--56232034 Score: 107
Period size: 29 Copynumber: 2.7 Consensus size: 31
56231943 TCAGTCTCAA
*
56231953 CATATACTGGGCCGAAGTC-TTTCATTAAAT
1 CATATACTGGGCCGAAGCCTTTTCATTAAAT
* *
56231983 GAT-TACTGGGCCGAAGCCTTTTCA-TAATT
1 CATATACTGGGCCGAAGCCTTTTCATTAAAT
56232012 CATATCACTGGGCCGAAGCCTTT
1 CATAT-ACTGGGCCGAAGCCTTT
56232035 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
29 20 0.44
30 8 0.18
31 17 0.38
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (31 bp):
CATATACTGGGCCGAAGCCTTTTCATTAAAT
Found at i:56234002 original size:40 final size:40
Alignment explanation
Indices: 56233921--56234103 Score: 280
Period size: 40 Copynumber: 4.6 Consensus size: 40
56233911 TATTCGGATG
* *
56233921 ATATCCGGGCTAAGACTCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
56233962 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
56234002 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
56234042 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
56234082 ATATCC-GGCTAAATCTCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
56234104 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 13 0.10
40 96 0.72
41 25 0.19
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:56235695 original size:20 final size:21
Alignment explanation
Indices: 56235670--56235717 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
56235660 AAATGAATAC
*
56235670 ATCATGTGCATAACATA-CAT
1 ATCATGTGCATAACATATCAA
*
56235690 ATCATGTGCATATCATATCAA
1 ATCATGTGCATAACATATCAA
56235711 ATCATGT
1 ATCATGT
56235718 ATATCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (21 bp):
ATCATGTGCATAACATATCAA
Found at i:56238530 original size:40 final size:39
Alignment explanation
Indices: 56238446--56238623 Score: 182
Period size: 40 Copynumber: 4.5 Consensus size: 39
56238436 TTGAATGATG
* * * *
56238446 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
56238486 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
56238526 TCCGGGCT-AGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
56238564 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
56238605 -CCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAGT-CCGAAGG
56238624 GTTTGAACGA
Statistics
Matches: 117, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 32 0.27
39 4 0.03
40 71 0.61
41 10 0.09
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:56238581 original size:78 final size:79
Alignment explanation
Indices: 56238446--56238628 Score: 203
Period size: 78 Copynumber: 2.3 Consensus size: 79
56238436 TTGAATGATG
* *
56238446 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCT-AGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
56238511 GTGCGAGATACTA-A
65 GTGCGAGATACTATA
* * * **
56238525 TTCCGGGCTAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 -TCCGGGCTAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
56238587 TTGTGCGAGTTACTATA
63 TTGTGCGAGATACTATA
* *
56238604 ACCGGGCTATGTCCCGAAGGGTTTG
1 TCCGGGCTA-GTCCCGAAGGCTTTG
56238629 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
77 1 0.01
78 56 0.64
79 15 0.17
80 16 0.18
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTG
TGCGAGATACTATA
Found at i:56238650 original size:78 final size:78
Alignment explanation
Indices: 56238499--56238661 Score: 181
Period size: 78 Copynumber: 2.1 Consensus size: 78
56238489 GGACTAAGAT
* * **
56238499 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
56238564 TCCGGGTTAAGTC
66 TCCGGGTTAAATC
* *
56238577 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGG-GTTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTA-G-CCCGAAGGCATTTGAACGAGTTA-C
* *
56238639 TATATCC-GGTTAAATT
62 TAAATCCGGGTTAAATC
56238655 CCGAAGG
1 CCGAAGG
56238662 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
77 2 0.03
78 46 0.64
79 16 0.22
80 8 0.11
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGGTTAAATC
Found at i:56246454 original size:79 final size:79
Alignment explanation
Indices: 56246318--56246496 Score: 202
Period size: 79 Copynumber: 2.2 Consensus size: 79
56246308 TTGAATGATG
* *
56246318 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCT-AGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
56246383 GTGCGAGATACTA-A
65 GTGCGAGATACTATA
* * * * **
56246397 TTCCGGGCTAGGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 -TCCGGGCTAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
56246460 TTGTGCGAGTTACTATA
63 TTGTGCGAGATACTATA
*
56246477 ACCGGGCTATGTCCCGAAGG
1 TCCGGGCTA-GTCCCGAAGG
56246497 TGTTTGAACG
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.69
80 25 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTG
TGCGAGATACTATA
Found at i:56246509 original size:40 final size:39
Alignment explanation
Indices: 56246318--56246496 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 39
56246308 TTGAATGATG
* * * *
56246318 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCT-AGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
56246358 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCT-AG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
56246398 TCCGGGCTAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
56246437 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
56246478 -CCGGGCTATGTCCCGAAGG
1 TCCGGGCTA-GTCCCGAAGG
56246497 TGTTTGAACG
Statistics
Matches: 118, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
39 35 0.30
40 73 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:56246524 original size:79 final size:79
Alignment explanation
Indices: 56246371--56246535 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
56246361 GGACTAAGAT
* * **
56246371 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAGGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAGGCCCGAAGGCATTTGAACGAGTTACTAA
*
56246436 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * **
56246450 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGTGTTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTA-GGCCCGAAGGCATTTGAACGAGTTA-C
* *
56246513 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
56246529 CCGAAGG
1 CCGAAGG
56246536 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAGGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:56249873 original size:15 final size:15
Alignment explanation
Indices: 56249849--56249879 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
56249839 AATTGTTTTA
56249849 TTACAAAATTTCACT
1 TTACAAAATTTCACT
*
56249864 TTACATAATTTCACT
1 TTACAAAATTTCACT
56249879 T
1 T
56249880 ACTCTATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
TTACAAAATTTCACT
Found at i:56250266 original size:101 final size:101
Alignment explanation
Indices: 56250140--56250422 Score: 485
Period size: 101 Copynumber: 2.8 Consensus size: 101
56250130 CCGGTACATG
* * * * *
56250140 TAGTAGCCTGCACTTAGTACTACACATATGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
*
56250205 AGTACTACACACGTGATCGAAGTTAATGTGTACGCA
66 AGTACTACACACGTGATCGAAGTTAATGGGTACGCA
* *
56250241 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
56250306 AGTACTACACACGTGATCGAAGTTAATGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTAATGGGTACGCA
*
56250342 TAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
56250407 AGTACTACACACGTGA
66 AGTACTACACACGTGA
56250423 CTCACAACGG
Statistics
Matches: 171, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 171 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTAATGGGTACGCA
Found at i:56250396 original size:151 final size:151
Alignment explanation
Indices: 56250079--56250417 Score: 429
Period size: 151 Copynumber: 2.2 Consensus size: 151
56250069 ACCGAAGCTC
**
56250079 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCCGGTACATGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCCGGTACACATAGT
* * *
56250144 AGCCTGCACTTAGTACTACACATATGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTA
66 AGCCTGCACTTAGTACTACACATATGACTTAA-CATCGGATACACATAGTAGCCTACACTTAGTA
* *
56250209 CTACACACGTGATCGAAGTTAA
130 CTACACACGTGATCCAAGTCAA
* * *
56250231 TGT-GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCCGGTACACATAGT
* * *
56250295 AGCCTGCACTTAGTACTACACACGTGATCGAAGTT-A-AT-GGGTACGCATAGTAGCCTACACTT
66 AGCCTGCACTTAGTACTACACA--T-AT-G-ACTTAACATCGGATACACATAGTAGCCTACACTT
* *
56250357 AGTACTACACATGTGA-CCTA-TCAA
126 AGTACTACACACGTGATCCAAGTCAA
* *
56250381 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA
56250418 CGTGACTCAC
Statistics
Matches: 163, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
150 5 0.03
151 112 0.69
152 36 0.22
153 3 0.02
154 2 0.01
155 2 0.01
156 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCCGGTACACATAGT
AGCCTGCACTTAGTACTACACATATGACTTAACATCGGATACACATAGTAGCCTACACTTAGTAC
TACACACGTGATCCAAGTCAA
Found at i:56250423 original size:50 final size:50
Alignment explanation
Indices: 56250079--56250423 Score: 388
Period size: 50 Copynumber: 6.9 Consensus size: 50
56250069 ACCGAAGCTC
* **
56250079 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* ** * * * *
56250129 TCCGGTACATGTAGTAGCCTGCACTTAGTACTACACATATGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * ** *
56250179 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * *
56250231 TGT-GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* ** *
56250280 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * *
56250332 T-GGGTACGCATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* *
56250381 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC
56250424 TCACAACGGA
Statistics
Matches: 241, Mismatches: 48, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
49 9 0.04
50 152 0.63
51 73 0.30
52 7 0.03
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:56250799 original size:19 final size:20
Alignment explanation
Indices: 56250771--56250817 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
56250761 AAGAACATGT
56250771 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
56250792 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
56250811 TATATAT
1 TATATAT
56250818 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:56251082 original size:30 final size:30
Alignment explanation
Indices: 56251038--56251096 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
56251028 CAAAAATCAT
* * *
56251038 ACTTTTACAAATTTGTATTTTGACCCCTAA
1 ACTTTCACAAATTTGCACTTTGACCCCTAA
* *
56251068 ACTTTCACATATTTGCACTTTGGCCCCTA
1 ACTTTCACAAATTTGCACTTTGACCCCTA
56251097 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.41
Consensus pattern (30 bp):
ACTTTCACAAATTTGCACTTTGACCCCTAA
Found at i:56252093 original size:17 final size:18
Alignment explanation
Indices: 56252071--56252104 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
56252061 AAGTGAATTG
56252071 AAATTGC-GAAATTAAAT
1 AAATTGCAGAAATTAAAT
56252088 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
56252105 ATGAGGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:56254151 original size:10 final size:10
Alignment explanation
Indices: 56254132--56254181 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
56254122 TGAAATTCTA
56254132 AAAGATAAAT
1 AAAGATAAAT
56254142 ACAA-ATAAAT
1 A-AAGATAAAT
56254152 AAAGATAAAT
1 AAAGATAAAT
56254162 AAAGATAAAT
1 AAAGATAAAT
56254172 GAAA-ATAAAT
1 -AAAGATAAAT
56254182 CCTAAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:56256749 original size:30 final size:30
Alignment explanation
Indices: 56256693--56256749 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
56256683 TCCAGGGCCG
** * *
56256693 TGTCCCTCACATGACTGAGACGCACGCTTA
1 TGTCCCTCACACAACTAAGACACACGCTTA
56256723 TGTCCCTCACACAACTAAGACACACGC
1 TGTCCCTCACACAACTAAGACACACGC
56256750 CTGTGTCTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.37, G:0.16, T:0.19
Consensus pattern (30 bp):
TGTCCCTCACACAACTAAGACACACGCTTA
Found at i:56265789 original size:42 final size:42
Alignment explanation
Indices: 56265730--56265813 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
56265720 AATCTTAATT
* * *
56265730 GGGAAAATAATTTCCTTATTTTAATAAACTACTAAAATATAA
1 GGGAAAATAATTCCCTTATTTTAATAAACCACTAAAAGATAA
*
56265772 GGGAAAATAGTTCCCTTATTTTAATAAACCACTAAAAGATAA
1 GGGAAAATAATTCCCTTATTTTAATAAACCACTAAAAGATAA
56265814 AATAAAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (42 bp):
GGGAAAATAATTCCCTTATTTTAATAAACCACTAAAAGATAA
Found at i:56265866 original size:19 final size:18
Alignment explanation
Indices: 56265844--56265883 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
56265834 TTAATAAAAC
56265844 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
56265863 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
56265881 TTA
1 TTA
56265884 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:56273848 original size:42 final size:42
Alignment explanation
Indices: 56273765--56273877 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 42
56273755 TGCCGATTCT
** * **
56273765 ATGTCCCAAACATGGTCTTACACGGGACCTCACATTGATGCC
1 ATGTCCCAAACATGGTCTTACACGAAATCTCACATCAATGCC
*
56273807 ATGTCCCAGACATGGTCTTACACGAAATCTC-CTATCAATGCC
1 ATGTCCCAAACATGGTCTTACACGAAATCTCAC-ATCAATGCC
* * * *
56273849 ATATCCCATATATGGTCTTACATGAAATC
1 ATGTCCCAAACATGGTCTTACACGAAATC
56273878 ACATATTGAG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 1 0.02
42 59 0.98
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (42 bp):
ATGTCCCAAACATGGTCTTACACGAAATCTCACATCAATGCC
Found at i:56273929 original size:48 final size:49
Alignment explanation
Indices: 56273846--56273968 Score: 133
Period size: 48 Copynumber: 2.6 Consensus size: 49
56273836 TCCTATCAAT
* **
56273846 GCCATATCCCATATATGGTCTTACA-TGAAATCACATATTGAGGCTAAC
1 GCCATATCCCAAATATGGTCTTACACTGAAATCACATATCAAGGCTAAC
** * *
56273894 GCCATATCCCAAATATGGTCTTACACTGGCA-CACATATCAATGCTAAT
1 GCCATATCCCAAATATGGTCTTACACTGAAATCACATATCAAGGCTAAC
* * * *
56273942 ACCATGTCCCAGACATGGTCTTACACT
1 GCCATATCCCAAATATGGTCTTACACT
56273969 AGCTATCATA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 60 0.95
49 3 0.05
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.28
Consensus pattern (49 bp):
GCCATATCCCAAATATGGTCTTACACTGAAATCACATATCAAGGCTAAC
Found at i:56273979 original size:48 final size:47
Alignment explanation
Indices: 56273908--56274024 Score: 121
Period size: 47 Copynumber: 2.5 Consensus size: 47
56273898 TATCCCAAAT
* *
56273908 ATGGTCTTACACTGGC-ACACATATCA-ATGCTAATACCATGTCCCAGAC
1 ATGGTCTTACACTGGCTA-TCATATCACGT-C-AATACCATGTCCCAGAC
* * *
56273956 ATGGTCTTACACTAGCTATCATATCACGTCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTGGCTATCATATCACGTCAATACCATGTCCCAGAC
* * *
56274003 ATAGCCTTACACTGGCTCTCAT
1 ATGGTCTTACACTGGCTATCAT
56274025 TAATCATGGT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
47 33 0.57
48 23 0.40
49 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (47 bp):
ATGGTCTTACACTGGCTATCATATCACGTCAATACCATGTCCCAGAC
Found at i:56284731 original size:40 final size:40
Alignment explanation
Indices: 56284676--56284878 Score: 209
Period size: 40 Copynumber: 5.1 Consensus size: 40
56284666 CGGAATTTAA
* * ** *
56284676 CCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
56284716 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
56284756 CCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
56284795 CCGG-AATTAGTAACTCGCACAAATTCCTTC-GGATCTTAGT
1 CCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
56284835 CTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
56284875 CCGG
1 CCGG
56284879 ACATCATTTG
Statistics
Matches: 136, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.01
39 30 0.22
40 90 0.66
41 14 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:56284806 original size:79 final size:80
Alignment explanation
Indices: 56284662--56284879 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 80
56284652 GAATCACGTA
* * * ** * * *
56284662 CCTTCGGAATTTAACCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATAG
56284726 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
56284741 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATA
*
56284804 GTAACTCGCACAAATT
65 GTAACTCGCACAAATG
* * * * *
56284820 CCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCCCGGA
56284880 CATCATTTGA
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.60
80 44 0.38
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATAG
TAACTCGCACAAATG
Found at i:56286694 original size:50 final size:51
Alignment explanation
Indices: 56286637--56286741 Score: 185
Period size: 50 Copynumber: 2.1 Consensus size: 51
56286627 AATATCTCCT
* *
56286637 TTCTTACAATGTATCAAAGGTCATACATAAGGCTAATTCATTGAATAC-AA
1 TTCTTACAATGTATCAAAGGTCATACATAAGACCAATTCATTGAATACAAA
56286687 TTCTTACAATGTATCAAAGGTCATACATAAGACCAATTCATTGAATACAAA
1 TTCTTACAATGTATCAAAGGTCATACATAAGACCAATTCATTGAATACAAA
56286738 TTCT
1 TTCT
56286742 ATTATGCATA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
50 46 0.88
51 6 0.12
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.32
Consensus pattern (51 bp):
TTCTTACAATGTATCAAAGGTCATACATAAGACCAATTCATTGAATACAAA
Found at i:56288091 original size:43 final size:44
Alignment explanation
Indices: 56288036--56288404 Score: 372
Period size: 43 Copynumber: 8.7 Consensus size: 44
56288026 ATATCGTACA
*
56288036 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCACATATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
56288079 ATGCC-ACTGTCCCAGATAGGGTCTTACACG-AATCAAATAT-G
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
56288120 ATGCCGA-TGTCCTAGACATGGTCTTACACATAATCACATATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* *
56288163 ATGCCAAC-GTCCTAGACGTGGTCTTACACGTAA-CACATATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * *
56288205 ATGCC-ACTATCCCAGATAGGGTCTTACATGTAATCACATATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
56288248 ATGCCAAC-GTCCCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * *
56288291 ATACCAACAT-T-CCAG-TATGGTCTTACAAG-AGAACACATATTG
1 ATGCCAAC-TGTCCCAGACATGGTCTTACACGTA-ATCACATATCG
* * * * *
56288333 ATTCC-ACTGTCCCAAATAGGGTTTTACACGTAATCACATATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
*
56288376 ATGCCAA-TGTCCCAGACGTGGTCTTACAC
1 ATGCCAACTGTCCCAGACATGGTCTTACAC
56288405 TTTTTACAAT
Statistics
Matches: 267, Mismatches: 43, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
40 1 0.00
41 31 0.12
42 81 0.30
43 149 0.56
44 5 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:56288249 original size:85 final size:87
Alignment explanation
Indices: 56288036--56288403 Score: 368
Period size: 85 Copynumber: 4.3 Consensus size: 87
56288026 ATATCGTACA
* *
56288036 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGATAGGG
1 ATGCCAACTATCCCAGACATGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAAATAGGG
*
56288100 TCTTACACG-AATCAAATAT-G
66 TCTTACACGTAATCACATATCG
* * * ** * * *
56288120 ATGCCGA-TGTCCTAGACATGGTCTTACACATAATCACATATCGATGCCAAC-GTCCTAGA-CGT
1 ATGCCAACTATCCCAGACATGGTCTTACATGTAATCACATATCGATGCC-ACTGTCCCAAATAG-
56288182 GGTCTTACACGTAA-CACATATCG
64 GGTCTTACACGTAATCACATATCG
* * *
56288205 ATGCC-ACTATCCCAGATAGGGTCTTACATGTAATCACATATCGATGCCAAC-GTCCCAAA-CGT
1 ATGCCAACTATCCCAGACATGGTCTTACATGTAATCACATATCGATGCC-ACTGTCCCAAATAG-
*
56288267 GGTCTTACATGTAATCACATATCG
64 GGTCTTACACGTAATCACATATCG
* * * * * * *
56288291 ATACCAAC-ATTCCAG-TATGGTCTTACAAG-AGAACACATATTGATTCCACTGTCCCAAATAGG
1 ATGCCAACTATCCCAGACATGGTCTTACATGTA-ATCACATATCGATGCCACTGTCCCAAATAGG
*
56288353 GTTTTACACGTAATCACATATCG
65 GTCTTACACGTAATCACATATCG
* *
56288376 ATGCCAA-TGTCCCAGACGTGGTCTTACA
1 ATGCCAACTATCCCAGACATGGTCTTACA
56288404 CTTTTTACAA
Statistics
Matches: 240, Mismatches: 31, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
83 1 0.00
84 71 0.30
85 136 0.57
86 30 0.12
87 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (87 bp):
ATGCCAACTATCCCAGACATGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAAATAGGG
TCTTACACGTAATCACATATCG
Found at i:56288298 original size:128 final size:126
Alignment explanation
Indices: 56288039--56288404 Score: 468
Period size: 128 Copynumber: 2.9 Consensus size: 126
56288029 TCGTACAATG
*
56288039 CCAACGTCCCAGACATGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGATAGGGTCTT
1 CCAACGT-CCAGAC-TGGTCTTACAAGTAA-CACATATCGATGCCACTGTCCCAGATAGGGTCTT
* * * * *
56288104 ACACG-AATCAAATAT-GATGCCGATGTCCTAGACATGGTCTTACACATAATCACATATCGATG
63 ACACGTAATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACATAATCACATATCGATA
* *
56288166 CCAACGTCCTAGACGTGGTCTTACACGTAACACATATCGATGCCACTATCCCAGATAGGGTCTTA
1 CCAACGTCC-AGAC-TGGTCTTACAAGTAACACATATCGATGCCACTGTCCCAGATAGGGTCTTA
* * * **
56288231 CATGTAATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATCGATA
64 CACGTAATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACATAATCACATATCGATA
* * * * * *
56288294 CCAACATTCCAGTA-TGGTCTTACAAGAGAACACATATTGATTCCACTGTCCCAAATAGGGTTTT
1 CCAAC-GTCCAG-ACTGGTCTTACAAG-TAACACATATCGATGCCACTGTCCCAGATAGGGTCTT
56288358 ACACGTAATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACAC
63 ACACGTAATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACAC
56288405 TTTTTACAAT
Statistics
Matches: 208, Mismatches: 25, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
126 39 0.19
127 45 0.22
128 120 0.58
129 4 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (126 bp):
CCAACGTCCAGACTGGTCTTACAAGTAACACATATCGATGCCACTGTCCCAGATAGGGTCTTACA
CGTAATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACATAATCACATATCGATA
Found at i:56299198 original size:47 final size:47
Alignment explanation
Indices: 56299058--56299570 Score: 846
Period size: 47 Copynumber: 10.7 Consensus size: 47
56299048 TTAGGATTCT
56299058 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
56299107 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
56299156 ATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
56299203 ATGTGATGAACGTAAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
56299250 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
56299297 ATGTGATGAAGGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
56299346 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
56299393 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
56299442 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
56299489 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
56299536 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
56299571 TCCCGAAGGG
Statistics
Matches: 444, Mismatches: 16, Indels: 10
0.94 0.03 0.02
Matches are distributed among these distances:
47 283 0.64
49 161 0.36
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:56299208 original size:96 final size:96
Alignment explanation
Indices: 56299058--56299570 Score: 872
Period size: 96 Copynumber: 5.4 Consensus size: 96
56299048 TTAGGATTCT
56299058 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
56299123 AGTGTATATATATGTGATAAGGCCTAATGGCCG
64 AGTGTATATATATGTGATAAGGCCTAATGGCCG
* * *
56299156 ATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTAAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
56299221 TG--TATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCG
*
56299250 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAGGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
56299315 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCG
56299346 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
56299411 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCG
56299442 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * *
56299507 TG--TATATATGTGACAGGGCCGAGTGGCCA
66 TGTATATATATGTGATAAGGCCTAATGGCCG
* * *
56299536 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
56299571 TCCCGAAGGG
Statistics
Matches: 398, Mismatches: 15, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
94 145 0.36
96 234 0.59
98 19 0.05
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:56299236 original size:143 final size:143
Alignment explanation
Indices: 56299058--56299570 Score: 863
Period size: 143 Copynumber: 3.6 Consensus size: 143
56299048 TTAGGATTCT
56299058 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
56299123 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGAT
64 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGAT
56299188 AAGGCCTAATGGCCG
129 AAGGCCTAATGGCCG
* *
56299203 ATGTGATGAACGTAAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
56299268 TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAGGTGAAAGTGTATATATATGTGAT
66 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTG--TATATATGTGAT
56299331 AAGGCCTAATGGCCG
129 AAGGCCTAATGGCCG
56299346 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
56299411 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAA
56299476 GGCCTAATGGCCG
131 GGCCTAATGGCCG
* * * * * * *
56299489 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
56299554 TGTATA-A-ATGTGATAAG
66 TGTATATATATGTGATAAG
56299571 TCCCGAAGGG
Statistics
Matches: 351, Mismatches: 13, Indels: 12
0.93 0.03 0.03
Matches are distributed among these distances:
141 56 0.16
142 1 0.00
143 230 0.66
145 64 0.18
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCG
Found at i:56299739 original size:37 final size:37
Alignment explanation
Indices: 56299689--56299804 Score: 187
Period size: 37 Copynumber: 3.1 Consensus size: 37
56299679 CCGAGCTCTA
56299689 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
*
56299726 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
56299763 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
56299800 AAGAC
1 AAGAC
56299805 TTCGTAATAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:56303633 original size:79 final size:80
Alignment explanation
Indices: 56303491--56303671 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
56303481 TACTCGTTCA
* **
56303491 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
56303556 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
56303571 AATGCCTTC-GGACTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
56303633 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
56303650 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
56303672 GACATCATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.67
80 26 0.30
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:56303673 original size:40 final size:40
Alignment explanation
Indices: 56303470--56303673 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
56303460 CGGAATTTAA
** *
56303470 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
56303510 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
56303550 CCGGATTTAGTAACTCGCACCAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
56303589 CCAGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
56303629 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
56303669 CCGGA
1 CCGGA
56303674 CATCATTCGA
Statistics
Matches: 140, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
39 38 0.27
40 90 0.64
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:56306718 original size:39 final size:39
Alignment explanation
Indices: 56306664--56306781 Score: 200
Period size: 39 Copynumber: 3.0 Consensus size: 39
56306654 CAAGACACTC
* *
56306664 GAAATGTATCCGGGCTAAAGACCCACAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
56306703 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
56306742 GAAATGTATCCGGGCTAAAGTCCTGCAGGCTTTGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
56306781 G
1 G
56306782 TAACATAATT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.24
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:56308933 original size:12 final size:12
Alignment explanation
Indices: 56308916--56308942 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
56308906 AAAGGTTTGG
56308916 CACGGCCTAGCA
1 CACGGCCTAGCA
56308928 CACGGCCTAGCA
1 CACGGCCTAGCA
56308940 CAC
1 CAC
56308943 AGGCATGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.44, G:0.22, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:56325711 original size:36 final size:37
Alignment explanation
Indices: 56325664--56325755 Score: 159
Period size: 37 Copynumber: 2.5 Consensus size: 37
56325654 AAAAATGATT
*
56325664 AAAATATAAAAATTGAAAA-AATATATTTATTAATTA
1 AAAATAAAAAAATTGAAAATAATATATTTATTAATTA
56325700 AAAATAAAAAAATTGAAAATAATATATTTATTAATTA
1 AAAATAAAAAAATTGAAAATAATATATTTATTAATTA
56325737 AAAATAAAAAAATTTGAAA
1 AAAATAAAAAAA-TTGAAA
56325756 CAGTATGAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
36 18 0.34
37 29 0.55
38 6 0.11
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (37 bp):
AAAATAAAAAAATTGAAAATAATATATTTATTAATTA
Found at i:56326090 original size:28 final size:28
Alignment explanation
Indices: 56326058--56326116 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
56326048 GGTTTATTTC
* * *
56326058 CCTAAATAATTTAAAACCGACTTAAAGG
1 CCTAAAAAATTCAAAACCGACCTAAAGG
* *
56326086 CCTAAAAAATTCAAAATCGGCCTAAAGG
1 CCTAAAAAATTCAAAACCGACCTAAAGG
56326114 CCT
1 CCT
56326117 TATTTAACCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.44, C:0.22, G:0.12, T:0.22
Consensus pattern (28 bp):
CCTAAAAAATTCAAAACCGACCTAAAGG
Found at i:56348665 original size:21 final size:19
Alignment explanation
Indices: 56348615--56348684 Score: 59
Period size: 21 Copynumber: 3.5 Consensus size: 19
56348605 AAAGAATTTG
*
56348615 AAAGAAAAAAAGAAATGAAAG
1 AAAG-AAAAAAGAAAT-AAAA
* *
56348636 AGAGCAAAAAGAAAGTAAGAA
1 AAAGAAAAAAGAAA-TAA-AA
* *
56348657 AAAGAAAAATGAAATTAAA
1 AAAGAAAAAAGAAATAAAA
56348676 AAAGAAAAA
1 AAAGAAAAA
56348685 GAATTTGATC
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
19 11 0.28
20 13 0.32
21 16 0.40
ACGTcount: A:0.74, C:0.01, G:0.17, T:0.07
Consensus pattern (19 bp):
AAAGAAAAAAGAAATAAAA
Found at i:56348683 original size:18 final size:18
Alignment explanation
Indices: 56348655--56348715 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
56348645 AGAAAGTAAG
56348655 AAAAAGAAAAATGAAATTA
1 AAAAAG-AAAATGAAATTA
* * *
56348674 AAAAAGAAAAAGAATTTG
1 AAAAAGAAAATGAAATTA
** *
56348692 ATCAAGAAAATAAAATTGA
1 AAAAAGAAAATGAAATT-A
56348711 AAAAA
1 AAAAA
56348716 AATTGAGTAT
Statistics
Matches: 30, Mismatches: 11, Indels: 2
0.70 0.26 0.05
Matches are distributed among these distances:
18 21 0.70
19 9 0.30
ACGTcount: A:0.70, C:0.02, G:0.11, T:0.16
Consensus pattern (18 bp):
AAAAAGAAAATGAAATTA
Found at i:56353367 original size:20 final size:22
Alignment explanation
Indices: 56353310--56353367 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 22
56353300 TTTAAAGCTA
*
56353310 GCTAAGACAAATTAAATTTGGCT
1 GCTAAGACAAATTAAA-TTGGCG
* * *
56353333 GCTATGATAACTTAAA-T-GCG
1 GCTAAGACAAATTAAATTGGCG
56353353 GCTAAGACAAATTAA
1 GCTAAGACAAATTAA
56353368 TTGAATCATG
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
20 14 0.50
21 1 0.04
23 13 0.46
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (22 bp):
GCTAAGACAAATTAAATTGGCG
Found at i:56358869 original size:6 final size:6
Alignment explanation
Indices: 56358846--56358908 Score: 54
Period size: 6 Copynumber: 9.8 Consensus size: 6
56358836 GATCTCAATC
* * **
56358846 TCTTTT TCCTTC TCTTTT TCTTTT TCAATT TCATTTT TCTTTT TCTTATT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TC-TTTT TCTTTT TCTT-TT
56358896 CTCTTTT TGCTTT
1 -TCTTTT T-CTTT
56358909 CTTTCACACT
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
6 29 0.64
7 12 0.27
8 4 0.09
ACGTcount: A:0.06, C:0.21, G:0.02, T:0.71
Consensus pattern (6 bp):
TCTTTT
Found at i:56359948 original size:47 final size:47
Alignment explanation
Indices: 56359844--56360304 Score: 780
Period size: 47 Copynumber: 9.7 Consensus size: 47
56359834 ATGATAGTAT
56359844 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
56359893 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
56359940 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
56359987 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
56360034 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
56360081 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
56360128 GGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAG--TGTATATATGTGATAA
*
56360177 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
56360223 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
56360272 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
56360305 CCCGAAGGGC
Statistics
Matches: 393, Mismatches: 13, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
46 32 0.08
47 240 0.61
48 12 0.03
49 105 0.27
50 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:56359959 original size:22 final size:23
Alignment explanation
Indices: 56359931--56360011 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
56359921 AAGTGTATAT
56359931 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
*** ****
56359953 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGCCTAA-TG-GCCG
56359978 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
56360000 ATGTGATGAATG
1 ATGTGATGAATG
56360012 TGAAAGTGTA
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (23 bp):
ATGTGATGAATGCCTAATGGCCG
Found at i:56360478 original size:37 final size:37
Alignment explanation
Indices: 56360422--56360500 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
56360412 CCGAGCTCTA
* * *
56360422 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
56360459 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
56360496 AAGAC
1 AAGAC
56360501 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:56361887 original size:52 final size:52
Alignment explanation
Indices: 56361799--56361902 Score: 147
Period size: 52 Copynumber: 2.0 Consensus size: 52
56361789 TTTGAAGTCT
* * *
56361799 GTTAACACCTCGTGTTCGACTCCGGCGACGGCCTCGGGTTCGGGGTGTTACA
1 GTTAACACCTCGTGTTCGACTCCGGCAACGGCCTCGGGTACGGGGCGTTACA
* *
56361851 GTTAACACC-CTGTGTTCGACTCCGGTAACGGTCTCGGGTACGGGGCGTTACA
1 GTTAACACCTC-GTGTTCGACTCCGGCAACGGCCTCGGGTACGGGGCGTTACA
56361903 ATTTTATTAG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
51 1 0.02
52 45 0.98
ACGTcount: A:0.15, C:0.28, G:0.32, T:0.25
Consensus pattern (52 bp):
GTTAACACCTCGTGTTCGACTCCGGCAACGGCCTCGGGTACGGGGCGTTACA
Found at i:56368017 original size:13 final size:13
Alignment explanation
Indices: 56367994--56368027 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
56367984 AAACATATTA
56367994 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
56368008 TAAAATTTTGTGT
1 TAAAATTTTGTGT
56368021 TAGAAAT
1 TA-AAAT
56368028 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:56369004 original size:13 final size:13
Alignment explanation
Indices: 56368981--56369014 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
56368971 AAACATATTA
56368981 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
56368995 TAAAATTTTGTGT
1 TAAAATTTTGTGT
56369008 TAGAAAT
1 TA-AAAT
56369015 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:56369991 original size:13 final size:13
Alignment explanation
Indices: 56369968--56370001 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
56369958 AAACATATTA
56369968 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
56369982 TAAAATTTTGTGT
1 TAAAATTTTGTGT
56369995 TAGAAAT
1 TA-AAAT
56370002 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:56371965 original size:13 final size:13
Alignment explanation
Indices: 56371942--56371975 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
56371932 AAACATATTA
56371942 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
56371956 TAAAATTTTGTGT
1 TAAAATTTTGTGT
56371969 TAGAAAT
1 TA-AAAT
56371976 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:56372788 original size:986 final size:987
Alignment explanation
Indices: 56366898--56372819 Score: 11684
Period size: 987 Copynumber: 6.0 Consensus size: 987
56366888 ATGTGATAGG
56366898 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
1 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
*
56366963 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAATATT
66 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
56367028 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
131 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
*
56367093 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAGAAAGGTTGAAGA
196 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAAAAAGGTTGAAGA
56367158 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
261 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
56367223 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
326 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
* *
56367288 TACTCGGCCATGTATGTTGTCTTTCTTGGTTGGTGTTTGATGTTGTGGTGATGAGGCATGAAGAT
391 TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
* *
56367353 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGAGTGTGTGTGAGAATTTGAAAAGGATG
456 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
56367418 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
521 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
56367483 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
586 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
56367548 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
651 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
56367613 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
716 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
56367678 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
781 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
56367743 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
846 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
56367808 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
911 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
56367873 GTACCTTGAGTT
976 GTACCTTGAGTT
56367885 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
1 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
56367950 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
66 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
56368015 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
131 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
56368080 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAAAAAGGTTGAAGA
196 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAAAAAGGTTGAAGA
56368145 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
261 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
56368210 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
326 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
56368275 TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
391 TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
56368340 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
456 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
56368405 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
521 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
56368470 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
586 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
56368535 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
651 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
56368600 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
716 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
56368665 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
781 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
56368730 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
846 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
56368795 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
911 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
56368860 GTACCTTGAGTT
976 GTACCTTGAGTT
56368872 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
1 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
56368937 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
66 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
56369002 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
131 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
56369067 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAAAAAGGTTGAAGA
196 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAAAAAGGTTGAAGA
56369132 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
261 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
56369197 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
326 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
56369262 TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
391 TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
56369327 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
456 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
56369392 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
521 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
56369457 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
586 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
56369522 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
651 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
56369587 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
716 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
56369652 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
781 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
56369717 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
846 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
56369782 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
911 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
56369847 GTACCTTGAGTT
976 GTACCTTGAGTT
56369859 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
1 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
56369924 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
66 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
56369989 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
131 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
56370054 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAAAAAGGTTGAAGA
196 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAAAAAGGTTGAAGA
56370119 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
261 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
56370184 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
326 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
56370249 TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
391 TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
56370314 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
456 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
56370379 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
521 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
56370444 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
586 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
56370509 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
651 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
56370574 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
716 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
56370639 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
781 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
56370704 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
846 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
56370769 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
911 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
56370834 GTACCTTGAGTT
976 GTACCTTGAGTT
56370846 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
1 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
*
56370911 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAATATT
66 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
56370976 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
131 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
*
56371041 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAGAAAGGTTGAAGA
196 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAAAAAGGTTGAAGA
56371106 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
261 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
56371171 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
326 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
* *
56371236 TACTCGGCCATGTATGTTGTCTTTCTTGGTTGGTGTTTGATGTTGTGGTGATGAGGCATGAAGAT
391 TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
* *
56371301 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGAGTGTGTGTGAGAATTTGAAAAGGATG
456 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
*
56371366 GGTCTTAGCAACTTCATGAGGTATTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
521 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
56371431 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
586 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
56371496 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
651 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
56371561 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
716 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
56371626 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
781 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
56371691 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
846 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
56371756 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
911 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
56371821 GTACCTTGAGTT
976 GTACCTTGAGTT
56371833 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
1 TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
56371898 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
66 AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
56371963 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
131 TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
56372028 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAG-AAAAAAGGTTGAAGA
196 CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAAAAAGGTTGAAGA
56372092 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
261 AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
56372157 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
326 TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
56372222 TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
391 TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
56372287 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
456 GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
56372352 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
521 GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
56372417 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
586 AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
56372482 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
651 GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
56372547 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
716 TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
* *
56372612 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTACACATTTGGCTA
781 CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
56372677 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
846 TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
* *
56372742 ATGTTGAACTTGATTCATGATTTCATATACATATGACTCTAATGTCTAATGTATATATGGGCTAA
911 ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
56372807 GTACCTTGAGTT
976 GTACCTTGAGTT
56372819 T
1 T
56372820 CTCTTTGATG
Statistics
Matches: 4911, Mismatches: 24, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
986 733 0.15
987 4178 0.85
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (987 bp):
TTAATCTATAAGGATCTATTAATGCATGTTAGAAAATGCTTGTACTTGCATGTCAAATTACCCAA
AATTTTAGGTAGTGGCCGGCCATGCTATGGGTTAAAACATATTATAAACATTTTGTGTTAAAATT
TTGTGTTAGAAATAATAAAATAAAAGGTTAGTAATAAAGTAATGGAAATTGGGGGGTGATGAAAA
CAAAGTGAGAGTTTGGTTCTTCTTGGCCGAAAAACCAAGTAAAAGAAAGAAAAAAAGGTTGAAGA
AGTTCGGCCATGCTTGTAACTAGGTTGAGGTATGTTTGATGTTATTCCATGAAATTCATGCATAT
TTTTAGTTGTTAGTTTGAATTCTACCTAGCCCATGGTTTAAATTTTTGCTATTTGATGGAGATGA
TACTCGGCCATGGATGTTGTCTTTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAAGAT
GATTGAGTTTGAGTGCTTAATAAAAAGGATTGGATGTGATTGTGCGTGAGAATTTGAAAAGGATG
GGTCTTAGCAACTTCATGAGGTGTTCGGCCATGGTGCTAAAATGTTGTATTTGTGTTTAAACTTA
AAATTGTTTAGTTATATGGTTAGTATAGGTATGGATGACCGAATATGAGAGCATGAATAGATGAA
GAGTTTTGTAATTATAAACAAAATTGGTTAATTGATATGTGGTAAATGTTAAGTGTTAAATGAAA
TGGAAATGATATCATATTGGAATATGTATATTCGACCACATGAATGAATACATAGATTGATGTTG
CATATATTCGGCCTTTAATTAAGGATGTAGGTGATAGTGATAGATTGAAGTTGCACATTCGGCTA
TAGGTAAGCATATTGATGATTTTATCTTGACTTAGATAATCGGCTAAAGGAGAATATTGGCTAAT
ATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGTCTAATGTATATATGGGCTAA
GTACCTTGAGTT
Found at i:56373324 original size:40 final size:40
Alignment explanation
Indices: 56373276--56373441 Score: 246
Period size: 40 Copynumber: 4.2 Consensus size: 40
56373266 GGACTAAGAT
*
56373276 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
56373316 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
56373356 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* * *
56373396 CCGAAGGCATTTGTGCAAGTTG-CTATATTC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
56373435 CCGAAGG
1 CCGAAGG
56373442 TACTTGGGTT
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 14 0.12
40 102 0.87
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:56376789 original size:15 final size:15
Alignment explanation
Indices: 56376769--56376799 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
56376759 TATAATGAAA
56376769 AAATGAAAGAAAAAG
1 AAATGAAAGAAAAAG
*
56376784 AAATGAGAGAAAAAG
1 AAATGAAAGAAAAAG
56376799 A
1 A
56376800 GTGTGAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.23, T:0.06
Consensus pattern (15 bp):
AAATGAAAGAAAAAG
Found at i:56377234 original size:36 final size:36
Alignment explanation
Indices: 56377187--56377261 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
56377177 CCAAAAGGTA
*
56377187 AGCAAGGTATGAGTTTTGAAGTTTTTAAAACATATC
1 AGCAAGGTATGAGTTTTGAAGTTTTTAAAACACATC
56377223 AGCAAGGTATGAGTTTTGAAGTTTTTAAAACACATC
1 AGCAAGGTATGAGTTTTGAAGTTTTTAAAACACATC
56377259 AGC
1 AGC
56377262 CTCATTTGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (36 bp):
AGCAAGGTATGAGTTTTGAAGTTTTTAAAACACATC
Found at i:56385941 original size:29 final size:29
Alignment explanation
Indices: 56385902--56385980 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
56385892 CTTAATAATC
*
56385902 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
56385932 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
56385961 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
56385981 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:56393063 original size:20 final size:18
Alignment explanation
Indices: 56393030--56393066 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
56393020 GCAACTCATA
56393030 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
56393048 ATTTACAACTTATTTTACA
1 ATTT-CAAC-TATTTTACA
56393067 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:56396016 original size:39 final size:40
Alignment explanation
Indices: 56395921--56396143 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
56395911 TTGAATGATG
*
56395921 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
56395959 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
56396000 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
56396039 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
56396078 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
56396117 AACCGGGCTATGTCCCGATGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
56396144 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:56396107 original size:79 final size:81
Alignment explanation
Indices: 56395921--56396143 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 81
56395911 TTGAATGATG
* * *
56395921 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
56395983 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
56396000 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
56396061 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * * *
56396078 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGATGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
56396142 TG
66 TG
56396144 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 46 0.37
79 56 0.44
80 24 0.19
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:56396165 original size:79 final size:79
Alignment explanation
Indices: 56395921--56396176 Score: 208
Period size: 79 Copynumber: 3.3 Consensus size: 79
56395911 TTGAATGATG
* * * *
56395921 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
56395982 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
56396000 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
56396064 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
56396078 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGATGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
56396141 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
56396158 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
56396177 TACGTGATTT
Statistics
Matches: 152, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 35 0.23
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:56403185 original size:39 final size:40
Alignment explanation
Indices: 56403088--56403310 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
56403078 TTGAATGATG
*
56403088 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
56403126 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
56403167 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
56403206 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
56403245 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
56403284 AACCGGGCTATGTCCCGATGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
56403311 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 91 0.57
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:56403274 original size:79 final size:79
Alignment explanation
Indices: 56403088--56403310 Score: 242
Period size: 79 Copynumber: 2.8 Consensus size: 79
56403078 TTGAATGATG
* * * * * *
56403088 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CTGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
56403150 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
*
56403167 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCATT
*
56403229 TGTGCGAGTTACTAAA
64 TGTGCGAGATACTAAA
* * *
56403245 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGATGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
56403310 G
65 G
56403311 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
78 45 0.36
79 57 0.46
80 21 0.17
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:56403332 original size:79 final size:79
Alignment explanation
Indices: 56403142--56403343 Score: 200
Period size: 79 Copynumber: 2.6 Consensus size: 79
56403132 ACTAAGATCT
** * *
56403142 GAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAA
1 GAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
*
56403205 TTCCGGGCTAAGCCC
65 TACCGGGCTAAGCCC
** *
56403220 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-A
1 GAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAA
*
56403283 TAACCGGGCTATGTCCC
65 T-ACCGGGCTAAG-CCC
* * * *
56403300 GATGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 GAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
56403344 TACGTGATTT
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 35 0.33
79 47 0.44
80 24 0.22
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
ACCGGGCTAAGCCC
Found at i:56406268 original size:46 final size:44
Alignment explanation
Indices: 56406194--56406395 Score: 160
Period size: 46 Copynumber: 4.5 Consensus size: 44
56406184 ATCGATGCCG
* * * *
56406194 TGTCCCAGACAGGTCTTACACTGACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACATTGACACATCT---CGTAGCCGACGCA
*
56406240 TGTCCTAGACATGTCTTACATT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACATTGA-CACATCTCGTAGCCGACGCA
* * *
56406284 TGTCCCAGACATGTCTGACATTGGCTAACATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACATTGAC--ACATCTCGTA-GCCGACGCA
* * * * * *
56406330 TGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACATTGACACATC-T-C-GTAGCCGACGCA
56406376 TGTCCCAGACATGTCTTACA
1 TGTCCCAGACATGTCTTACA
56406396 CTAGCCCTCG
Statistics
Matches: 132, Mismatches: 14, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
43 5 0.04
44 31 0.23
45 3 0.02
46 93 0.70
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACATTGACACATCTCGTAGCCGACGCA
Found at i:56406396 original size:46 final size:46
Alignment explanation
Indices: 56406237--56406397 Score: 186
Period size: 46 Copynumber: 3.5 Consensus size: 46
56406227 CCGTGCTGAC
* * * *
56406237 GCATGTCCTAGACATGTCTTACATTAGC--ACATCTCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTGGCTAACATCTCG-AGGCCGAT
* *
56406281 GCATGTCCCAGACATGTCTGACATTGGCTAACATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGAGGCCGAT
** * *
56406327 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTAACAT-CTCGAGGCCGAT
56406373 GCATGTCCCAGACATGTCTTACACT
1 GCATGTCCCAGACATGTCTTACACT
56406398 AGCCCTCGTA
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
44 25 0.24
45 1 0.01
46 75 0.73
47 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGAGGCCGAT
Found at i:56406420 original size:46 final size:46
Alignment explanation
Indices: 56406320--56406443 Score: 151
Period size: 46 Copynumber: 2.7 Consensus size: 46
56406310 AACATCTCGA
* * *
56406320 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATACTGT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATACTAT
* * *
56406366 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTATTAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATACT-AT
*
56406413 -GCCGATGCCATGTCCCATACATGGTCTTACA
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACA
56406444 TTGGCACACA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 45 0.67
47 14 0.21
48 8 0.12
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATACTAT
Found at i:56408091 original size:20 final size:18
Alignment explanation
Indices: 56408057--56408093 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
56408047 GCAATTCATA
56408057 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
56408075 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
56408094 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:56408902 original size:50 final size:51
Alignment explanation
Indices: 56408792--56408912 Score: 156
Period size: 50 Copynumber: 2.4 Consensus size: 51
56408782 CTGTTACAAT
* * * *
56408792 GAGTTACTTATTGCATGACTTAATTTAATGATGCAAACTTTAACTAACATG
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATA
* *
56408843 GCAGTTACATAATGCATGTCATAATTT-ATTATGCAAAC-TTAACTAACATTA
1 G-AGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACA-TA
56408894 GAGTTACATAATGCATGAC
1 GAGTTACATAATGCATGAC
56408913 TTTATTAAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
50 27 0.44
51 13 0.21
52 21 0.34
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (51 bp):
GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATA
Found at i:56411109 original size:50 final size:50
Alignment explanation
Indices: 56410931--56411135 Score: 206
Period size: 50 Copynumber: 4.1 Consensus size: 50
56410921 ATCTATTGTG
* * * * *
56410931 AGGTCACGTGTGTATTACTAAGTACAGGTTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* *
56410981 -GGT-AGCATGTGTAGTACTAAGTGCAGGCTACT--ATGCATACCCGATAACTT
1 AGGTCA-CGTGTGTAGTACTAAGTGCAGGCTACTACATG--TACCAGATAA-TT
* * * **
56411031 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
*
56411081 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAG-ATAATT
56411131 -GGTCA
1 AGGTCA
56411136 GATTGATTGG
Statistics
Matches: 128, Mismatches: 18, Indels: 19
0.78 0.11 0.12
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 41 0.32
50 46 0.36
51 34 0.27
52 1 0.01
53 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
Found at i:56418302 original size:51 final size:49
Alignment explanation
Indices: 56418175--56418369 Score: 221
Period size: 49 Copynumber: 3.9 Consensus size: 49
56418165 TCTATTGTAA
* * *
56418175 GGTCACATGTGTAGTACTAAGTGCAGGCTACT-TCATGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGTTACTAT-GTGTACCAGATAATT
* * *
56418224 GGTCGCATGTGTAGTATTAAGTGCAGGTTACTATGTGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGTTACTATGTGTACCAGATAA-TT
* * *
56418274 CGGTCACGTGTGTAGTACTAAGTACAGGTTACTACGTGTACCAGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGTTACTATGTGTACCAGATAATT
* * * * * *
56418324 GGTCGCATGTGTAGTACTCAGTGCAGGCTATTATGCGTACTAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGTTACTATGTGTACCAGATA
56418370 GTTTTGGCTA
Statistics
Matches: 123, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 77 0.63
50 5 0.04
51 41 0.33
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGTTACTATGTGTACCAGATAATT
Found at i:56420766 original size:16 final size:15
Alignment explanation
Indices: 56420745--56420774 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
56420735 TTAAAGGAAT
56420745 AATGTTCAAGACATGA
1 AATGTTCAAG-CATGA
56420761 AATGTTCAAGCATG
1 AATGTTCAAGCATG
56420775 GTAATTATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (15 bp):
AATGTTCAAGCATGA
Done.