Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 183 of 295
Found at i:57882329 original size:23 final size:23
Alignment explanation
Indices: 57882299--57882347 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
57882289 ATCACAAATA
57882299 CATAATTAATTTTACTTTCATTT
1 CATAATTAATTTTACTTTCATTT
57882322 CATAATTAATTTTACTTTCATTT
1 CATAATTAATTTTACTTTCATTT
57882345 CAT
1 CAT
57882348 CAGTTACCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (23 bp):
CATAATTAATTTTACTTTCATTT
Found at i:57885804 original size:93 final size:93
Alignment explanation
Indices: 57885671--57885840 Score: 250
Period size: 93 Copynumber: 1.8 Consensus size: 93
57885661 GCCCATAAGT
* * * * *
57885671 GAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACACAAATCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
57885736 CAAGCTCGGATGTCTAGTTACATCTCTC
66 CAAGCTCGGATGTCTAGTTACATCTCTC
* * *
57885764 GAACTCGGACACAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACACAAATCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
57885829 CGAGTTCGGATG
66 CAAGCTCGGATG
57885841 CCCAAATATC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACACAAATCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CAAGCTCGGATGTCTAGTTACATCTCTC
Found at i:57891278 original size:46 final size:46
Alignment explanation
Indices: 57891154--57891282 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
57891144 TGTAACCCGC
* * * *
57891154 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
57891200 CCATAAGTGAACTCGGACTCAAGTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
57891246 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57891283 TGCCCAAATA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:57894342 original size:19 final size:17
Alignment explanation
Indices: 57894318--57894360 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
57894308 TGGGCCACGT
*
57894318 TGGGCCTAGATGGGCTGTG
1 TGGGCCTA-ATGGGCT-CG
*
57894337 TGGGCCCAATGGGCTCG
1 TGGGCCTAATGGGCTCG
57894354 TGGGCCT
1 TGGGCCT
57894361 CACACGGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 7 0.33
19 7 0.33
ACGTcount: A:0.09, C:0.23, G:0.44, T:0.23
Consensus pattern (17 bp):
TGGGCCTAATGGGCTCG
Found at i:57894623 original size:27 final size:26
Alignment explanation
Indices: 57894579--57894642 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
57894569 GACCCCGGTT
*
57894579 TGTAAAATCACCAAAATACC-CTTGTA
1 TGTAAAATGACCAAAATACCAC-TGTA
**
57894605 GTGTAAAATGACCGTAATACCACTGTA
1 -TGTAAAATGACCAAAATACCACTGTA
57894632 TGGTAAAATGA
1 T-GTAAAATGA
57894643 AGATAATGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.03
27 30 0.94
28 1 0.03
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.27
Consensus pattern (26 bp):
TGTAAAATGACCAAAATACCACTGTA
Found at i:57902248 original size:37 final size:37
Alignment explanation
Indices: 57902208--57902331 Score: 149
Period size: 37 Copynumber: 3.4 Consensus size: 37
57902198 AGCTTTTCGG
*
57902208 AGCATCTGGCATGTTATCAGGTGGATTAGCTCTTATG
1 AGCATCTGGCATGTTATCAGGTGGATTAGCTCTTATA
* ** *
57902245 AGCACCTGGTGTGTTATCAGGTGGATTAGCTCTTAAA
1 AGCATCTGGCATGTTATCAGGTGGATTAGCTCTTATA
* * * * *
57902282 AGAATTTGGCATGCTATCAAGTGGATTAGATCTTATA
1 AGCATCTGGCATGTTATCAGGTGGATTAGCTCTTATA
*
57902319 AACATCTGGCATG
1 AGCATCTGGCATG
57902332 CTTCGGTTGG
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (37 bp):
AGCATCTGGCATGTTATCAGGTGGATTAGCTCTTATA
Found at i:57904770 original size:27 final size:26
Alignment explanation
Indices: 57904726--57904776 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
57904716 CTCGCTGCAA
*
57904726 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
57904753 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
57904777 TGTAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:57904895 original size:98 final size:98
Alignment explanation
Indices: 57904726--57904989 Score: 467
Period size: 98 Copynumber: 2.7 Consensus size: 98
57904716 CTCGCTGCAA
* * *
57904726 TCTGGTGGCCTCGCCACATATATCTGT-TCTGGTGACTTCGTCACAATATCTTGTAGCCTCGCTG
1 TCTGGTGGCCTAGCCGCA-ATATTTGTATCTGGTGACTTCGTCACAATATCTTGTAGCCTCGCTG
57904790 CAATCTGGTGGCTTTGCCATATATATATATCTGT
65 CAATCTGGTGGCTTTGCCATATATATATATCTGT
57904824 TCTGGTGGCCTAGCCGCAATATTTGTATCTGGTGACTTCGTCACAATATCTTGTAGCCTCGCTGC
1 TCTGGTGGCCTAGCCGCAATATTTGTATCTGGTGACTTCGTCACAATATCTTGTAGCCTCGCTGC
*
57904889 AATCTGGTGGCTTTGCCATTTATATATATCTGT
66 AATCTGGTGGCTTTGCCATATATATATATCTGT
*
57904922 TCTGGTGGCCTAGCCGCAATATTTGTATCTGGTGACTTCGTCACAATATCTGGTAGCCTCGCTGC
1 TCTGGTGGCCTAGCCGCAATATTTGTATCTGGTGACTTCGTCACAATATCTTGTAGCCTCGCTGC
57904987 AAT
66 AAT
57904990 TTCTGTGGAG
Statistics
Matches: 160, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
97 7 0.04
98 153 0.96
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (98 bp):
TCTGGTGGCCTAGCCGCAATATTTGTATCTGGTGACTTCGTCACAATATCTTGTAGCCTCGCTGC
AATCTGGTGGCTTTGCCATATATATATATCTGT
Found at i:57904989 original size:48 final size:48
Alignment explanation
Indices: 57904824--57904989 Score: 113
Period size: 48 Copynumber: 3.4 Consensus size: 48
57904814 ATATATCTGT
*
57904824 TCTGGTGGCCTAGCCGCAATATTTGTATCTGGTGACTTCGTCACAATA
1 TCTGGTAGCCTAGCCGCAATATTTGTATCTGGTGACTTCGTCACAATA
* * * * * ** * * ** * *
57904872 TCTTGTAGCCTCGCTGCAAT-CTGGTGGCT-TTGCCATTTAT-ATATATCTGT
1 TCTGGTAGCCTAGCCGCAATATTTGTATCTGGTGAC-TTCGTCACA-A--T-A
*
57904922 TCTGGTGGCCTAGCCGCAATATTTGTATCTGGTGACTTCGTCACAATA
1 TCTGGTAGCCTAGCCGCAATATTTGTATCTGGTGACTTCGTCACAATA
* *
57904970 TCTGGTAGCCTCGCTGCAAT
1 TCTGGTAGCCTAGCCGCAAT
57904990 TTCTGTGGAG
Statistics
Matches: 79, Mismatches: 31, Indels: 16
0.63 0.25 0.13
Matches are distributed among these distances:
46 5 0.06
47 9 0.11
48 33 0.42
49 2 0.03
50 16 0.20
51 9 0.11
52 5 0.06
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (48 bp):
TCTGGTAGCCTAGCCGCAATATTTGTATCTGGTGACTTCGTCACAATA
Found at i:57917674 original size:27 final size:26
Alignment explanation
Indices: 57917630--57917680 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
57917620 CTCACTGCAA
*
57917630 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
57917657 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
57917681 TGTAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:57928507 original size:48 final size:48
Alignment explanation
Indices: 57928436--57928821 Score: 619
Period size: 48 Copynumber: 8.0 Consensus size: 48
57928426 CAAGATAAAT
* *
57928436 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
57928484 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGACATATGCATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
57928532 ATATCTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
** * * *
57928580 ATATGTATATGTGGTAAAGCTAAATGGATAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
57928628 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
57928676 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
57928724 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
57928772 ATATGTATATTTGGTAAAGCTGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
57928820 AT
1 AT
57928822 GTGTGTATAT
Statistics
Matches: 312, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 312 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:57929012 original size:37 final size:37
Alignment explanation
Indices: 57928962--57929064 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
57928952 GGAAATATAT
57928962 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
57928999 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
57929036 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCTGGGTAAGACCCGATGACTACGTGTGG
57929065 TGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:57936707 original size:40 final size:40
Alignment explanation
Indices: 57936520--57936700 Score: 181
Period size: 40 Copynumber: 4.5 Consensus size: 40
57936510 ATGATGTCCA
* * * *
57936520 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * * *
57936560 GACTAAGAT-CCGAAGGCTTTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* * *
57936600 GGCTAAG-CCCGAAGGCATTGGTGTGAGTTATTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
57936639 GGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
57936679 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
57936701 AACGAGTAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 31 0.27
40 73 0.64
41 10 0.09
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:57944392 original size:37 final size:37
Alignment explanation
Indices: 57944342--57944420 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
57944332 TTATTACGAA
* *
57944342 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
57944379 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
57944416 GTCTT
1 GTCTT
57944421 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:57944617 original size:47 final size:47
Alignment explanation
Indices: 57944539--57944984 Score: 766
Period size: 47 Copynumber: 9.4 Consensus size: 47
57944529 CCCTTCGGGA
* * * * * * *
57944539 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
57944586 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57944633 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57944680 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57944727 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57944776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57944823 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57944870 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57944919 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57944966 CTTATCACATATATACACT
1 CTTATCACATATATACACT
57944985 GTCTTGGCTG
Statistics
Matches: 382, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 289 0.76
49 93 0.24
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:57944768 original size:96 final size:94
Alignment explanation
Indices: 57944539--57944984 Score: 766
Period size: 96 Copynumber: 4.7 Consensus size: 94
57944529 CCCTTCGGGA
* * * * * * * * *
57944539 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
57944604 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
57944633 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
57944698 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
57944727 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
57944792 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
57944823 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
57944888 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
57944919 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
57944984 T
66 T
57944985 GTCTTGGCTG
Statistics
Matches: 337, Mismatches: 11, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 150 0.45
96 187 0.55
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:57944795 original size:143 final size:143
Alignment explanation
Indices: 57944539--57944984 Score: 788
Period size: 143 Copynumber: 3.1 Consensus size: 143
57944529 CCCTTCGGGA
* * * * * * * * *
57944539 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
57944602 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
57944667 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
57944680 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
57944745 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
57944810 TCGGCCATTAGGC
131 TCGGCCATTAGGC
57944823 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
57944888 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
57944953 TCGGCCATTAGGC
131 TCGGCCATTAGGC
57944966 CTTATCACATATATACACT
1 CTTATCACATATATACACT
57944985 GTCTTGGCTG
Statistics
Matches: 292, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
141 45 0.15
143 247 0.85
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:57949494 original size:79 final size:81
Alignment explanation
Indices: 57949358--57949540 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
57949348 TCGAATGATG
* *
57949358 TCCGGGCTAAGTCCCGAAGG-ATTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
57949422 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
57949437 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
57949499 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
57949517 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
57949541 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:57949556 original size:40 final size:40
Alignment explanation
Indices: 57949359--57949542 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
57949349 CGAATGATGT
* * * *
57949359 CCGGGCTAAGTCCCGAAGG-ATTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
57949399 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
57949439 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
57949477 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
57949518 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57949543 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 79 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:57949564 original size:79 final size:79
Alignment explanation
Indices: 57949411--57949565 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
57949401 GGACTAAGAT
* **
57949411 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
57949476 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
57949490 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
57949553 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
57949566 ATTTCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:57951619 original size:18 final size:19
Alignment explanation
Indices: 57951577--57951619 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
57951567 CTATTTAGCT
*
57951577 ATCAAACTTATAAATCATC
1 ATCAAACTTATAAACCATC
57951596 ATCAAACTT-TAAAACCATC
1 ATCAAACTTAT-AAACCATC
57951615 A-CAAA
1 ATCAAA
57951620 TTCATGAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (19 bp):
ATCAAACTTATAAACCATC
Found at i:57956589 original size:27 final size:27
Alignment explanation
Indices: 57956558--57956735 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
57956548 TAAATTGTAC
57956558 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
57956585 TGCACTAAGTGTACGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57956611 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
57956639 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
57956667 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57956694 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
57956721 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
57956736 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:57956672 original size:82 final size:81
Alignment explanation
Indices: 57956559--57956714 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
57956549 AAATTGTACA
* *
57956559 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTACGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTA-GCACTAAGTG
57956623 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
57956640 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTG
*
57956705 TGCGAGTTGA
65 TGCGAATTGA
57956715 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:57956726 original size:82 final size:81
Alignment explanation
Indices: 57956555--57956735 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
57956545 GATTAAATTG
* *
57956555 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTACGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
57956620 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
57956636 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGAT-GCACT
* **
57956700 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
57956718 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
57956736 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:57964082 original size:27 final size:27
Alignment explanation
Indices: 57964018--57964252 Score: 226
Period size: 27 Copynumber: 8.7 Consensus size: 27
57964008 TTAGTTTACC
* *
57964018 AAATTACGAAAATA-CCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
57964044 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
57964071 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
57964098 AAATTACCAAAATACCCTTGGTTTAG-A
1 AAATTACCAAAATACCCCTGGTTT-GTA
*
57964125 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
57964152 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
57964179 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
** **
57964206 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* *
57964233 AAATTACTAAAGTACCCCTG
1 AAATTACCAAAATACCCCTG
57964253 ATTTATAGAA
Statistics
Matches: 179, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
26 18 0.10
27 156 0.87
28 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:57964183 original size:54 final size:54
Alignment explanation
Indices: 57964018--57964251 Score: 249
Period size: 54 Copynumber: 4.4 Consensus size: 54
57964008 TTAGTTTACC
* * *
57964018 AAATTACGAAAATA-CCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
* *
57964071 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTAG-A
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTT-GTA
* * *
57964125 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
** * ** ** * **
57964179 AAATTACTGAAATA-CCCTCGACCTGTAAAATTATTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTGGTTTGTA
* *
57964233 AAATTACTAAAGTACCCCT
1 AAATTACCAAAATACCCCT
57964252 GATTTATAGA
Statistics
Matches: 153, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
53 18 0.12
54 131 0.86
55 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
Found at i:57964275 original size:27 final size:27
Alignment explanation
Indices: 57964248--57964465 Score: 179
Period size: 27 Copynumber: 8.4 Consensus size: 27
57964238 ACTAAAGTAC
*
57964248 CCCT-GATTTATAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTATCGTTTTA
* * *
57964274 CCTTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTATCGTTTTA
* * *
57964301 CCATCGATTTATAGAATTATTGTTTTA
1 CCCTCGATTTACAGAATTATCGTTTTA
* *
57964328 CCTTTGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTATCGTTTTA
* *
57964355 CCCTCGATTTACAAAATTA-CTATTTTA
1 CCCTCGATTTACAGAATTATC-GTTTTA
* *
57964382 CCCTCAATTTAC--------CATTTTA
1 CCCTCGATTTACAGAATTATCGTTTTA
* * * *
57964401 CCCTCAACTTATAAAATTA-CTGTTTTA
1 CCCTCGATTTACAGAATTATC-GTTTTA
*
57964428 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTATCGTTTTA
57964455 CCCTCGATTTA
1 CCCTCGATTTA
57964466 TAAAATTACT
Statistics
Matches: 156, Mismatches: 25, Indels: 21
0.77 0.12 0.10
Matches are distributed among these distances:
19 16 0.10
20 1 0.01
26 5 0.03
27 133 0.85
28 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.43
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTATCGTTTTA
Found at i:57964290 original size:54 final size:54
Alignment explanation
Indices: 57964232--57964346 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
57964222 CTCGACTTGT
* *
57964232 AAAATTACTAAAGTACC-CCTGATTTATAGAATTATCGTTTTACCTTCGATTTAC
1 AAAATTACCAAAGTACCATC-GATTTATAGAATTATCGTTTTACCTTCGATTTAC
**** * *
57964286 AAAATTACCGTTTTACCATCGATTTATAGAATTATTGTTTTACCTTTGATTTAC
1 AAAATTACCAAAGTACCATCGATTTATAGAATTATCGTTTTACCTTCGATTTAC
*
57964340 AGAATTA
1 AAAATTA
57964347 TCGTTTTACC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 50 0.98
55 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.42
Consensus pattern (54 bp):
AAAATTACCAAAGTACCATCGATTTATAGAATTATCGTTTTACCTTCGATTTAC
Found at i:57964319 original size:81 final size:81
Alignment explanation
Indices: 57964234--57964392 Score: 201
Period size: 81 Copynumber: 2.0 Consensus size: 81
57964224 CGACTTGTAA
* * *
57964234 AATTACTAAAGTACCCCTGATTTATAGAATTATCGTTTTACCTTCGATTTACAAAATTACCGTTT
1 AATTACTAAAGTACCCCTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCATTT
*
57964299 TACCATCGATTTATAG
66 TACCATCAATTTATAG
* **** ** *
57964315 AATTATTGTTTTACCTTTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACTATTT
1 AATTACTAAAGTACCCCTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCATTT
*
57964380 TACCCTCAATTTA
66 TACCATCAATTTA
57964393 CCATTTTACC
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (81 bp):
AATTACTAAAGTACCCCTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCATTT
TACCATCAATTTATAG
Found at i:57964352 original size:54 final size:54
Alignment explanation
Indices: 57964252--57964473 Score: 208
Period size: 54 Copynumber: 4.3 Consensus size: 54
57964242 AAGTACCCCT
*
57964252 GATTTATAGAATTATCGTTTTACCTTCGATTTACAAAATTACCGTTTTACCATC
1 GATTTATAGAATTATTGTTTTACCTTCGATTTACAAAATTACCGTTTTACCATC
* * * *
57964306 GATTTATAGAATTATTGTTTTACCTTTGATTTACAGAATTATCGTTTTACCCTC
1 GATTTATAGAATTATTGTTTTACCTTCGATTTACAAAATTACCGTTTTACCATC
* * * * * * *
57964360 GATTTACAAAATTACTATTTTACC--C----T-C-AATTTACCATTTTACCCTC
1 GATTTATAGAATTATTGTTTTACCTTCGATTTACAAAATTACCGTTTTACCATC
* * * * * * *
57964406 AACTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
1 GATTTATAGAATTATTGTTTTACCTTCGATTTACAAAATTACCGTTTTACCATC
*
57964460 GATTTATAAAATTA
1 GATTTATAGAATTA
57964474 CTACCCCTAT
Statistics
Matches: 137, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
46 35 0.26
47 1 0.01
48 2 0.01
52 1 0.01
53 1 0.01
54 97 0.71
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (54 bp):
GATTTATAGAATTATTGTTTTACCTTCGATTTACAAAATTACCGTTTTACCATC
Found at i:57964393 original size:19 final size:19
Alignment explanation
Indices: 57964371--57964407 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
57964361 ATTTACAAAA
*
57964371 TTACTATTTTACCCTCAAT
1 TTACCATTTTACCCTCAAT
57964390 TTACCATTTTACCCTCAA
1 TTACCATTTTACCCTCAA
57964408 CTTATAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (19 bp):
TTACCATTTTACCCTCAAT
Found at i:57964403 original size:46 final size:46
Alignment explanation
Indices: 57964350--57964439 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 46
57964340 AGAATTATCG
* *
57964350 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAATTTACCA
1 TTTTACCCTCAACTTACAAAATTACTATTTTACCCTCAATTTACCA
* * *
57964396 TTTTACCCTCAACTTATAAAATTACTGTTTTACCCTCGATTTAC
1 TTTTACCCTCAACTTACAAAATTACTATTTTACCCTCAATTTAC
57964440 AGAATTACCG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.29, C:0.26, G:0.03, T:0.42
Consensus pattern (46 bp):
TTTTACCCTCAACTTACAAAATTACTATTTTACCCTCAATTTACCA
Found at i:57964463 original size:100 final size:100
Alignment explanation
Indices: 57964290--57964476 Score: 284
Period size: 100 Copynumber: 1.9 Consensus size: 100
57964280 ATTTACAAAA
* * * * * * * *
57964290 TTACCGTTTTACCATCGATTTATAGAATTATTGTTTTACCTTTGATTTACAGAATTATCGTTTTA
1 TTACCATTTTACCATCAACTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTA
57964355 CCCTCGATTTACAAAATTACTATTTTACCCTCAAT
66 CCCTCGATTTACAAAATTACTATTTTACCCTCAAT
*
57964390 TTACCATTTTACCCTCAACTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTA
1 TTACCATTTTACCATCAACTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTA
*
57964455 CCCTCGATTTATAAAATTACTA
66 CCCTCGATTTACAAAATTACTA
57964477 CCCCTATGGT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (100 bp):
TTACCATTTTACCATCAACTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTA
CCCTCGATTTACAAAATTACTATTTTACCCTCAAT
Found at i:57964472 original size:27 final size:27
Alignment explanation
Indices: 57964390--57964474 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
57964380 TACCCTCAAT
* * *
57964390 TTACCATTTTACCCTCAACTTATAAAA
1 TTACCGTTTTACCCTCGATTTATAAAA
* * *
57964417 TTACTGTTTTACCCTCGATTTACAGAA
1 TTACCGTTTTACCCTCGATTTATAAAA
57964444 TTACCGTTTTACCCTCGATTTATAAAA
1 TTACCGTTTTACCCTCGATTTATAAAA
57964471 TTAC
1 TTAC
57964475 TACCCCTATG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.40
Consensus pattern (27 bp):
TTACCGTTTTACCCTCGATTTATAAAA
Found at i:57964794 original size:27 final size:26
Alignment explanation
Indices: 57964742--57964800 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
57964732 ATATGTATAT
*
57964742 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
57964768 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
57964795 ATATCT
1 ATATCT
57964801 AGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:57964955 original size:31 final size:31
Alignment explanation
Indices: 57964920--57964995 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 31
57964910 TTGCATTCAC
* * * * *
57964920 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTATCACCTGATACTA
*
57964951 ATTCTGATTCTAATTCTATCACCTGATTCTA
1 ATTCTGATTCTAATTCTATCACCTGATACTA
57964982 ATTCT-AGTTCTAAT
1 ATTCTGA-TTCTAAT
57964996 AATGTTTCTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 1 0.03
31 37 0.97
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTATCACCTGATACTA
Found at i:57968354 original size:9 final size:9
Alignment explanation
Indices: 57968340--57968370 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
57968330 GATTATTCTT
57968340 TTTTTTTTC
1 TTTTTTTTC
57968349 TTTTTTTTC
1 TTTTTTTTC
57968358 TTTTCTTTTC
1 TTTT-TTTTC
57968368 TTT
1 TTT
57968371 CTTCTTCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.62
10 8 0.38
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:57968361 original size:14 final size:14
Alignment explanation
Indices: 57968338--57968378 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
57968328 AGGATTATTC
57968338 TTTTTT-TTTTCTT
1 TTTTTTCTTTTCTT
57968351 TTTTTTCTTTTCTT
1 TTTTTTCTTTTCTT
*
57968365 TTCTTTCTTCTTCT
1 TTTTTTCTT-TTCT
57968379 CTAGCTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 6 0.24
14 15 0.60
15 4 0.16
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTCTTTTCTT
Found at i:57969505 original size:25 final size:25
Alignment explanation
Indices: 57969477--57969526 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
57969467 CCTTATAATA
* *
57969477 TGAAAATGACCATTTTGCCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
57969502 TGAAAATGACCATTATACCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
57969527 GATATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (25 bp):
TGAAAATGACCATTATACCCCTAGG
Found at i:57969581 original size:10 final size:10
Alignment explanation
Indices: 57969566--57969605 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
57969556 CTGTTTTGTA
57969566 CATGATATGC
1 CATGATATGC
57969576 CATGATATGC
1 CATGATATGC
*
57969586 ACCTGATATGC
1 -CATGATATGC
57969597 CATGATATG
1 CATGATATG
57969606 TTCATATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (10 bp):
CATGATATGC
Found at i:57972038 original size:17 final size:19
Alignment explanation
Indices: 57972006--57972047 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
57971996 CCATATTGCG
57972006 AGCCCATGTGGGCCCACAT
1 AGCCCATGTGGGCCCACAT
57972025 A-CCCATGT-GGCCCACAT
1 AGCCCATGTGGGCCCACAT
57972042 AGCCCA
1 AGCCCA
57972048 GAAATGGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.45
18 11 0.50
19 1 0.05
ACGTcount: A:0.24, C:0.40, G:0.21, T:0.14
Consensus pattern (19 bp):
AGCCCATGTGGGCCCACAT
Found at i:57978739 original size:43 final size:41
Alignment explanation
Indices: 57978692--57978877 Score: 192
Period size: 43 Copynumber: 4.3 Consensus size: 41
57978682 AGCGCCACTG
* * *
57978692 AAGGTCATTTTCTTTAGCAGCTTTTGTGACAAAACCACTGCTA
1 AAGGTCATGTTCTTTAGC-GCATTTGCGACAAAA-CACTGCTA
*
57978735 AAGGTCATGTTCTTTAGCGGAGTTTGCGACAAAAGCACTGCTA
1 AAGGTCATGTTCTTTAGCGCA-TTTGCGACAAAA-CACTGCTA
* * *
57978778 AAGGTCATGTTCTTTAGCGACATTTGTGACAAAAGAGCCGCTA
1 AAGGTCATGTTCTTTAGCG-CATTTGCGACAAAACA-CTGCTA
* ** *
57978821 AAGGTCATGTCCTTTAGCTGCATTTGCGACAAAAGTGCCGCCTA
1 AAGGTCATGTTCTTTAGC-GCATTTGCGACAAAA-CACTG-CTA
57978865 AAGGTCATGTTCT
1 AAGGTCATGTTCT
57978878 GTGACAGCCC
Statistics
Matches: 123, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
42 2 0.02
43 104 0.85
44 17 0.14
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (41 bp):
AAGGTCATGTTCTTTAGCGCATTTGCGACAAAACACTGCTA
Found at i:57978821 original size:86 final size:87
Alignment explanation
Indices: 57978692--57978877 Score: 236
Period size: 86 Copynumber: 2.1 Consensus size: 87
57978682 AGCGCCACTG
* * * * *
57978692 AAGGTCATTTTCTTTAGCAGCTTTTGTGACAAAACCACTGCTAAAGGTCATGTTCTTTAGC-GGA
1 AAGGTCATGTTCTTTAGCAGCATTTGTGACAAAACCACCGCTAAAGGTCATGTCCTTTAGCTGCA
*
57978756 GTTTGCGACAAAAGCACTG-CTA
66 -TTTGCGACAAAAGCACCGCCTA
*
57978778 AAGGTCATGTTCTTTAGC-GACATTTGTGACAAAA-GAGCCGCTAAAGGTCATGTCCTTTAGCTG
1 AAGGTCATGTTCTTTAGCAG-CATTTGTGACAAAACCA-CCGCTAAAGGTCATGTCCTTTAGCTG
**
57978841 CATTTGCGACAAAAGTGCCGCCTA
64 CATTTGCGACAAAAGCACCGCCTA
57978865 AAGGTCATGTTCT
1 AAGGTCATGTTCT
57978878 GTGACAGCCC
Statistics
Matches: 87, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
85 2 0.02
86 67 0.77
87 18 0.21
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (87 bp):
AAGGTCATGTTCTTTAGCAGCATTTGTGACAAAACCACCGCTAAAGGTCATGTCCTTTAGCTGCA
TTTGCGACAAAAGCACCGCCTA
Found at i:57980633 original size:39 final size:40
Alignment explanation
Indices: 57980568--57980675 Score: 157
Period size: 39 Copynumber: 2.7 Consensus size: 40
57980558 TATTCAGATG
* *
57980568 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
57980608 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
57980647 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
57980676 AGCAAGTAGC
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
39 34 0.57
40 26 0.43
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:57980689 original size:40 final size:40
Alignment explanation
Indices: 57980568--57980689 Score: 144
Period size: 40 Copynumber: 3.1 Consensus size: 40
57980558 TATTCAGATG
* *
57980568 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCTAGT-GACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CT
* *
57980608 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCT
*
57980647 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCT
57980687 ATA
1 ATA
57980690 TCTGGCTAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 12
0.80 0.07 0.14
Matches are distributed among these distances:
39 34 0.49
40 36 0.51
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCT
Found at i:57980697 original size:39 final size:39
Alignment explanation
Indices: 57980573--57980708 Score: 127
Period size: 39 Copynumber: 3.5 Consensus size: 39
57980563 AGATGATAAC
* *
57980573 CGGGCTAAGTCTCGAAGGCATTTGTGCTAGT-GACTA-ATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-T
* *
57980612 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTATAAC
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTAT-AT
*
57980652 CGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATAT
* * *
57980691 CTGGCTAAATTCCGAAGG
1 CGGGCTAAGTCCCGAAGG
57980709 TACTTGGTTT
Statistics
Matches: 81, Mismatches: 9, Indels: 13
0.79 0.09 0.13
Matches are distributed among these distances:
39 48 0.59
40 32 0.40
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATAT
Found at i:58004997 original size:5 final size:5
Alignment explanation
Indices: 58004987--58005030 Score: 79
Period size: 5 Copynumber: 8.6 Consensus size: 5
58004977 TTGTTTGTTC
58004987 TTTAT TTTAT TTTAT TTTATT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT TTT
58005031 CATAGGACAG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 33 0.87
6 5 0.13
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:58005011 original size:21 final size:21
Alignment explanation
Indices: 58004987--58005030 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
58004977 TTGTTTGTTC
58004987 TTTATTTTATTTTATTTTATT
1 TTTATTTTATTTTATTTTATT
58005008 TTTATTTTATTTTATTTTATT
1 TTTATTTTATTTTATTTTATT
58005029 TT
1 TT
58005031 CATAGGACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTATTTTATTTTATTTTATT
Found at i:58005561 original size:9 final size:9
Alignment explanation
Indices: 58005549--58005837 Score: 270
Period size: 9 Copynumber: 32.6 Consensus size: 9
58005539 TATATCATAT
58005549 CATAACTTA
1 CATAACTTA
* *
58005558 CATACCTCA
1 CATAACTTA
*
58005567 CATAACATA
1 CATAACTTA
58005576 CATAACTTA
1 CATAACTTA
58005585 CATAACTTA
1 CATAACTTA
* *
58005594 TATAA-ATA
1 CATAACTTA
* *
58005602 TA-AATTATA
1 CATAACT-TA
*
58005611 TCCTAACTTA
1 -CATAACTTA
58005621 CATAACTTA
1 CATAACTTA
58005630 CATAACTTA
1 CATAACTTA
58005639 CATAACTTA
1 CATAACTTA
*
58005648 CATAATTTA
1 CATAACTTA
*
58005657 CATAATTTA
1 CATAACTTA
58005666 CATAACTTA
1 CATAACTTA
58005675 CATAACTTA
1 CATAACTTA
58005684 CATAA--TA
1 CATAACTTA
58005691 CATAA--TA
1 CATAACTTA
*
58005698 CATAA-ATA
1 CATAACTTA
* * *
58005706 TATATCATA
1 CATAACTTA
*
58005715 TCATAAATGT-
1 -CATAACT-TA
58005725 CATAACTTA
1 CATAACTTA
*
58005734 CATAACATA
1 CATAACTTA
*
58005743 CATAATTTA
1 CATAACTTA
58005752 CATAACTTA
1 CATAACTTA
*
58005761 CATAATTTA
1 CATAACTTA
*
58005770 CATAATTTA
1 CATAACTTA
58005779 CATAACTTA
1 CATAACTTA
58005788 CATAACTTA
1 CATAACTTA
* *
58005797 CATAATTTT
1 CATAACTTA
58005806 CATAACTTA
1 CATAACTTA
* *
58005815 CATTATTTA
1 CATAACTTA
*
58005824 CATAACTAA
1 CATAACTTA
58005833 CATAA
1 CATAA
58005838 ATAAATATCA
Statistics
Matches: 234, Mismatches: 37, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
7 16 0.07
8 10 0.04
9 199 0.85
10 5 0.02
11 4 0.02
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:58005612 original size:63 final size:63
Alignment explanation
Indices: 58005511--58005848 Score: 203
Period size: 63 Copynumber: 5.6 Consensus size: 63
58005501 TCTTTAAAAT
* * * * * *
58005511 TACATAACTCACATACCTTACCTACATATATATCATATCATAACTTACATACCTCACATAACA
1 TACATAACTTACATAACTTACATAAATATAAATCATATCATAACTTACATAACTCACATAACA
* * * * *
58005574 TACATAACTTACATAACTTATATAAATATAAATTATATCCTAACTTACATAACTTACATAACT
1 TACATAACTTACATAACTTACATAAATATAAATCATATCATAACTTACATAACTCACATAACA
* *
58005637 TACATAACTTACATAATTTACAT--A-AT---T--TA-CATAACTTACATAACTTACAT-A-A
1 TACATAACTTACATAACTTACATAAATATAAATCATATCATAACTTACATAACTCACATAACA
* * * *
58005689 TACATAA--TACATAA-ATATATATCATATCATAA--ATGTCATAACTTACATAACAT-ACATAA
1 TACATAACTTACATAACTTACATA-AATAT-A-AATCATATCATAACTTACATAAC-TCACATAA
**
58005748 TT
62 CA
* * * * * ** *
58005750 TACATAACTTACATAATTTACAT-AATTTACATAACT-TACATAACTTACATAATTTTCATAACT
1 TACATAACTTACATAACTTACATAAATATAAATCA-TAT-CATAACTTACATAACTCACATAACA
* * *
58005813 TACATTATTTACATAACTAACATAAATA-AATATCAT
1 TACATAACTTACATAACTTACATAAATATAA-ATCAT
58005849 TTTCTCAACT
Statistics
Matches: 217, Mismatches: 34, Indels: 48
0.73 0.11 0.16
Matches are distributed among these distances:
49 4 0.02
50 7 0.03
52 8 0.04
53 3 0.01
54 20 0.09
55 2 0.01
57 1 0.00
58 1 0.00
59 19 0.09
60 5 0.02
61 9 0.04
62 6 0.03
63 122 0.56
64 10 0.05
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.36
Consensus pattern (63 bp):
TACATAACTTACATAACTTACATAAATATAAATCATATCATAACTTACATAACTCACATAACA
Found at i:58009116 original size:384 final size:384
Alignment explanation
Indices: 58008407--58009150 Score: 1479
Period size: 384 Copynumber: 1.9 Consensus size: 384
58008397 AGAGGTCCTT
58008407 AGTTGGTAATTAGACCATTGGATAAGTTAGTGGACAAAAATGGACATGAATAAGTAAAATTTCAA
1 AGTTGGTAATTAGACCATTGGATAAGTTAGTGGACAAAAATGGACATGAATAAGTAAAATTTCAA
58008472 AGTTATGCATTAAGGGCATTTTGGTCATTTGGTAAATAAAAGAATAAAAAGGGAAAATAAAGCTA
66 AGTTATGCATTAAGGGCATTTTGGTCATTTGGTAAATAAAAGAATAAAAAGGGAAAATAAAGCTA
58008537 AAATTTGCTCATCTTTCTTCAACCTTGGCTGAAAATTTGAAGAACACCATAGCTAGGATTTTTTT
131 AAATTTGCTCATCTTTCTTCAACCTTGGCTGAAAATTTGAAGAACACCATAGCTAGGATTTTTTT
58008602 CAACTTTCAAGCTTGATAGAAAGTGCATCCTAGCCCTGTTTTTAATGCTCTTTACATTTTTGAAG
196 CAACTTTCAAGCTTGATAGAAAGTGCATCCTAGCCCTGTTTTTAATGCTCTTTACATTTTTGAAG
58008667 TCGTTATCATCCGATTTACCTATTTTTACATTATTTTGAAGTAGGGTTTATGTTTAAAAATTTAC
261 TCGTTATCATCCGATTTACCTATTTTTACATTATTTTGAAGTAGGGTTTATGTTTAAAAATTTAC
58008732 CCATGTGTGACATGCATTTATTTTGATGTTTGATGTAAATTTGCTCTTTACTTAGTAAA
326 CCATGTGTGACATGCATTTATTTTGATGTTTGATGTAAATTTGCTCTTTACTTAGTAAA
58008791 AGTTGGTAATTAGACCATTGGATAAGTTAGTGGACAAAAATGGACATGAATAAGTAAAATTTCAA
1 AGTTGGTAATTAGACCATTGGATAAGTTAGTGGACAAAAATGGACATGAATAAGTAAAATTTCAA
58008856 AGTTATGCATTAAGGGCATTTTGGTCATTTGGTAAATAAAAGAATAAAAAGGGAAAATAAAGCTA
66 AGTTATGCATTAAGGGCATTTTGGTCATTTGGTAAATAAAAGAATAAAAAGGGAAAATAAAGCTA
58008921 AAATTTGCTCATCTTTCTTCAACCTTGGCTGAAAATTTGAAGAACACCATAGCTAGGATTTTTTT
131 AAATTTGCTCATCTTTCTTCAACCTTGGCTGAAAATTTGAAGAACACCATAGCTAGGATTTTTTT
*
58008986 TAACTTTCAAGCTTGATAGAAAGTGCATCCTAGCCCTGTTTTTAATGCTCTTTACATTTTTGAAG
196 CAACTTTCAAGCTTGATAGAAAGTGCATCCTAGCCCTGTTTTTAATGCTCTTTACATTTTTGAAG
58009051 TCGTTATCATCCGATTTACCTATTTTTACATTATTTTGAAGTAGGGTTTATGTTTAAAAATTTAC
261 TCGTTATCATCCGATTTACCTATTTTTACATTATTTTGAAGTAGGGTTTATGTTTAAAAATTTAC
58009116 CCATGTGTGACATGCATTTATTTTGATGTTTGATG
326 CCATGTGTGACATGCATTTATTTTGATGTTTGATG
58009151 GAAGATATTG
Statistics
Matches: 359, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
384 359 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (384 bp):
AGTTGGTAATTAGACCATTGGATAAGTTAGTGGACAAAAATGGACATGAATAAGTAAAATTTCAA
AGTTATGCATTAAGGGCATTTTGGTCATTTGGTAAATAAAAGAATAAAAAGGGAAAATAAAGCTA
AAATTTGCTCATCTTTCTTCAACCTTGGCTGAAAATTTGAAGAACACCATAGCTAGGATTTTTTT
CAACTTTCAAGCTTGATAGAAAGTGCATCCTAGCCCTGTTTTTAATGCTCTTTACATTTTTGAAG
TCGTTATCATCCGATTTACCTATTTTTACATTATTTTGAAGTAGGGTTTATGTTTAAAAATTTAC
CCATGTGTGACATGCATTTATTTTGATGTTTGATGTAAATTTGCTCTTTACTTAGTAAA
Found at i:58014620 original size:46 final size:46
Alignment explanation
Indices: 58014553--58014725 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
58014543 TAGATGAGCA
*
58014553 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
58014599 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
58014646 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
58014692 CCCGATCTCGTTGAGTTGAGTCCGAGTTCGCTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
58014726 AGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:58014709 original size:93 final size:93
Alignment explanation
Indices: 58014550--58014721 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
58014540 ATTTAGATGA
* * *
58014550 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
58014615 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
58014643 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGATCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
58014708 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
58014722 CTTAAGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58020159 original size:46 final size:46
Alignment explanation
Indices: 58020106--58020281 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
58020096 AGGTTGAGCA
58020106 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
* * * * *
58020152 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAA--ATG
* *
58020197 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCTAATG
1 --TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
* * *
58020245 -CCTGAGCTCGTTGAGTTCAGTCTGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
58020282 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 6 0.06
46 58 0.54
47 28 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
Found at i:58020272 original size:93 final size:93
Alignment explanation
Indices: 58020103--58020274 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
58020093 GGAAGGTTGA
*
58020103 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAATGTCCGAACTCGTTGAGT
*
58020168 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TCAGTCCGAGTTCGTGAGATGTAACTAG
* *
58020196 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCTAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAATGTCC-GAACTCGTTGAG
*
58020260 TTCAGTCTGAGTTCG
65 TTCAGTCCGAGTTCG
58020275 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAATGTCCGAACTCGTTGAGT
TCAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58029292 original size:27 final size:26
Alignment explanation
Indices: 58029262--58029331 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 26
58029252 CATTGACTTG
58029262 TAAAATTACCAAAGTACCCCCGATTTA
1 TAAAATTACCAAA-TACCCCCGATTTA
* * *
58029289 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTA-CCAAATACCCCCGATTTA
58029316 TAAAATTACCGAAATA
1 TAAAATTACC-AAATA
58029332 AGATAGAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.05
27 31 0.82
28 5 0.13
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (26 bp):
TAAAATTACCAAATACCCCCGATTTA
Found at i:58029366 original size:27 final size:27
Alignment explanation
Indices: 58029336--58029424 Score: 151
Period size: 27 Copynumber: 3.3 Consensus size: 27
58029326 GAAATAAGAT
58029336 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
58029363 AGAATTACCATTTTACCCTTGATTTCC
1 AGAATTACCATTTTACCCTCGATTTAC
58029390 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
58029417 AAAATTAC
1 AGAATTAC
58029425 TGAAATACCC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:58029433 original size:27 final size:27
Alignment explanation
Indices: 58029349--58029515 Score: 138
Period size: 27 Copynumber: 6.2 Consensus size: 27
58029339 ATTACCATTT
* ***
58029349 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
58029376 TACCCTTGATTTCCAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
**
58029403 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
58029430 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
** *
58029457 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
58029484 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
58029511 TACCC
1 TACCC
58029516 CTTATTTGTG
Statistics
Matches: 116, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
26 1 0.01
27 115 0.99
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:58029434 original size:54 final size:54
Alignment explanation
Indices: 58029336--58029488 Score: 164
Period size: 54 Copynumber: 2.8 Consensus size: 54
58029326 GAAATAAGAT
* ** *
58029336 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTCC
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACCATAATACCCTTGATTTAC
* *
58029390 AGAATTACCATTTTACCCTCGATTTACAAAATTACTGA-AATACCCTTGGTTTAC
1 AGAATTACCATTTTACCCTCGATTTACAAAATTAC-CATAATACCCTTGATTTAC
* *** ** * *
58029444 AAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCC
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACCATAATACCC
58029489 CTGGTTTGTA
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 81 0.98
55 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.32
Consensus pattern (54 bp):
AGAATTACCATTTTACCCTCGATTTACAAAATTACCATAATACCCTTGATTTAC
Found at i:58029516 original size:27 final size:27
Alignment explanation
Indices: 58029405--58029544 Score: 129
Period size: 27 Copynumber: 5.1 Consensus size: 27
58029395 TACCATTTTA
* **
58029405 CCCTCGATTTACAAAATTACTGAAATAC
1 CCCT-GATTTATAAAATTACCAAAATAC
* * *
58029433 CCTTGGTTTACAAAATTACCAAAATA-
1 CCCTGATTTATAAAATTACCAAAATAC
**
58029459 CCCTCGATCAATAAAATTACCAAAATAC
1 CCCT-GATTTATAAAATTACCAAAATAC
* *
58029487 CCCTGGTTTGTAAAATTACCAAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
* * * *
58029514 CCCTTATTTGTGAAATTACCGAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
58029541 CCCT
1 CCCT
58029545 ATAGGGTAGA
Statistics
Matches: 93, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.03
27 83 0.89
28 7 0.08
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.29
Consensus pattern (27 bp):
CCCTGATTTATAAAATTACCAAAATAC
Found at i:58029544 original size:54 final size:54
Alignment explanation
Indices: 58029403--58029515 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
58029393 ATTACCATTT
** * * *
58029403 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATCAATAAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAA
* **
58029457 TACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATCAATAAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAA
58029511 TACCC
1 TACCC
58029516 CTTATTTGTG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.41, C:0.25, G:0.07, T:0.27
Consensus pattern (54 bp):
TACCCTCGATCAATAAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAA
Found at i:58029557 original size:27 final size:27
Alignment explanation
Indices: 58029527--58029668 Score: 187
Period size: 27 Copynumber: 5.3 Consensus size: 27
58029517 TTATTTGTGA
*
58029527 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
*
58029554 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
*
58029581 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* *
58029608 AATTACCGAAATACCCGTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* * * *
58029635 AATTA-CTAAGATACCCTTGTGGGGTAA
1 AATTACCGAA-ATACCCTTATAGGGTAG
58029662 AATTACC
1 AATTACC
58029669 ATTTTGCCCT
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.03
27 98 0.96
28 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTATAGGGTAG
Found at i:58029558 original size:81 final size:82
Alignment explanation
Indices: 58029473--58029669 Score: 206
Period size: 81 Copynumber: 2.4 Consensus size: 82
58029463 CGATCAATAA
** **
58029473 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTTAT-TTGT-GAAATTACCG
1 AATTACCAAAATACCCCTGGTAGGGTAAAATTACCAAAATA-CCCTTATAGGGTAG-AATTACCG
58029535 AAATACCCCTATAGGGTAG
64 AAATACCCCTATAGGGTAG
* * * **
58029554 AATTACCGAAATA-CCCTTGTAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAATTACCGAA
1 AATTACCAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCTTATAGGGTAGAATTACCGAA
* *
58029618 ATACCCGTGTAGGGTAG
66 ATACCCCTATAGGGTAG
* * * *
58029635 AATTACTAAGATA-CCCTTGTGGGGTAAAATTACCA
1 AATTACCAAAATACCCCTGGTAGGGTAAAATTACCA
58029670 TTTTGCCCTT
Statistics
Matches: 95, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
80 13 0.14
81 81 0.85
82 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (82 bp):
AATTACCAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCTTATAGGGTAGAATTACCGAA
ATACCCCTATAGGGTAG
Found at i:58029641 original size:54 final size:54
Alignment explanation
Indices: 58029527--58029668 Score: 214
Period size: 54 Copynumber: 2.6 Consensus size: 54
58029517 TTATTTGTGA
* * *
58029527 AATTACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCGTGTAGGGTAG
58029581 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCGTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCGTGTAGGGTAG
* * *
58029635 AATTACT-AAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAA-ATACCCTTATAGGGTAGAATTACC
58029669 ATTTTGCCCT
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 2 0.02
54 79 0.98
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCGTGTAGGGTAG
Found at i:58030060 original size:6 final size:6
Alignment explanation
Indices: 58030051--58030132 Score: 71
Period size: 6 Copynumber: 13.3 Consensus size: 6
58030041 TTGCATTCAC
* *
58030051 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
58030099 ATCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
58030133 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 5 0.08
6 48 0.77
7 6 0.10
8 3 0.05
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:58030082 original size:25 final size:25
Alignment explanation
Indices: 58030054--58030124 Score: 85
Period size: 25 Copynumber: 2.8 Consensus size: 25
58030044 CATTCACATT
58030054 CTGATTCTGATTCTG-TTACCTGAT-A-
1 CTGATTCTGATTCTGATT--CT-ATCAC
*
58030079 CTGATTTTGATTCTGATTCTATCAC
1 CTGATTCTGATTCTGATTCTATCAC
58030104 CTGATTCTGATTCTGATTCTA
1 CTGATTCTGATTCTGATTCTA
58030125 GTTCTGATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
23 2 0.05
24 3 0.07
25 34 0.83
26 2 0.05
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTATCAC
Found at i:58030093 original size:31 final size:31
Alignment explanation
Indices: 58030051--58030123 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
58030041 TTGCATTCAC
* *
58030051 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATCACCTGATACTG
* *
58030082 ATTTTGATTCTGATTCTATCACCTGATTCTG
1 ATTCTGATTCTGATTCTATCACCTGATACTG
58030113 ATTCTGATTCT
1 ATTCTGATTCT
58030124 AGTTCTGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTGATACTG
Found at i:58032113 original size:27 final size:27
Alignment explanation
Indices: 58032082--58032414 Score: 119
Period size: 27 Copynumber: 12.6 Consensus size: 27
58032072 TTAGTTTACC
* * *
58032082 AAATTACTAAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
58032109 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
58032136 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* ** *
58032163 AAATTGCTGAAATA----AGA----TA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** **
58032182 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** **
58032209 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** *
58032236 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** **
58032263 GAATTACCATTTTACCCTCGATTTAAA
1 AAATTACCAAAATACCCTCGATTTGTA
** * * **
58032290 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* ***
58032317 AAATTACCAAAATACCCTTGATCAATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
58032344 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
58032371 AAATTACCAAAATA-CCTCTAATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
58032398 AAATTATCGAAATACCC
1 AAATTACCAAAATACCC
58032415 CTGTAAGGTA
Statistics
Matches: 242, Mismatches: 53, Indels: 21
0.77 0.17 0.07
Matches are distributed among these distances:
19 9 0.04
23 4 0.02
26 2 0.01
27 225 0.93
28 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:58032244 original size:54 final size:54
Alignment explanation
Indices: 58032181--58032296 Score: 196
Period size: 54 Copynumber: 2.1 Consensus size: 54
58032171 GAAATAAGAT
* *
58032181 AGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAA
*
58032235 AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAA
1 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAA
*
58032289 AAAATTAC
1 AGAATTAC
58032297 TGAAATACCC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (54 bp):
AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAA
Found at i:58032306 original size:54 final size:54
Alignment explanation
Indices: 58032183--58032360 Score: 162
Period size: 54 Copynumber: 3.3 Consensus size: 54
58032173 AATAAGATAG
** * * *
58032183 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCATAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAA
** *
58032237 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAA
1 AATTACCATAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAA
* * * * *** * *
58032291 AATTACTGA-AATACCCTTGGTTTACAAAATTACCAAAATACCCTTGA-TCAATAA
1 AATTAC-CATAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAA-AA
*
58032345 AATTACCAAAATACCC
1 AATTACCATAATACCC
58032361 CTGGTTTGTA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 4 0.04
54 99 0.95
55 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.34
Consensus pattern (54 bp):
AATTACCATAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAA
Found at i:58032333 original size:81 final size:81
Alignment explanation
Indices: 58032179--58032352 Score: 204
Period size: 81 Copynumber: 2.1 Consensus size: 81
58032169 CTGAAATAAG
* * *** *
58032179 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTAAAAAATTACCGAAATACCCTCGATTTACAAAATTACC
*** **
58032244 ATTTTACCCTCGATTT
66 AAAATACCCTCGATCA
* * *
58032260 ATAGAATTACCATTTTACCCTCGATTTAAAAAATTACTGAAATACCCTTGGTTTACAAAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTAAAAAATTACCGAAATACCCTCGATTTACAAAATTACC
*
58032325 AAAATACCCTTGATCA
66 AAAATACCCTCGATCA
*
58032341 ATAAAATTACCA
1 ATAGAATTACCA
58032353 AAATACCCCT
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTCGATTTAAAAAATTACCGAAATACCCTCGATTTACAAAATTACC
AAAATACCCTCGATCA
Found at i:58032402 original size:54 final size:54
Alignment explanation
Indices: 58032289--58032417 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
58032279 CTCGATTTAA
* * *
58032289 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATCAAT
1 AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCTTAATCAAT
* ** ***
58032343 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCTCTAATTTGT
1 AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCT-TAATCAAT
* *
58032397 GAAATTATCGAAATACCCCTG
1 AAAATTACCGAAATACCCCTG
58032418 TAAGGTAGAA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
53 3 0.05
54 59 0.95
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (54 bp):
AAAATTACCGAAATACCCCTGGTTTACAAAATTACCAAAATACCCTTAATCAAT
Found at i:58032429 original size:27 final size:27
Alignment explanation
Indices: 58032399--58032540 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
58032389 TAATTTGTGA
* *
58032399 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
* *
58032426 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
* *
58032453 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
*
58032480 AATTACCGAAATACCCCTGT-AGGATAG
1 AATTACCGAAATACCCTTGTAAGG-TAG
* * *
58032507 AATTACCGAGATACCCTTGTGAGGTAA
1 AATTACCGAAATACCCTTGTAAGGTAG
58032534 AATTACC
1 AATTACC
58032541 ATTTTGCCCC
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.02
27 98 0.95
28 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAAGGTAG
Found at i:58032954 original size:6 final size:6
Alignment explanation
Indices: 58032923--58033010 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
58032913 TTGCATTCAC
* *
58032923 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
58032972 -TCACCTG ATTCTG ATTTTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
58033011 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:58032958 original size:31 final size:31
Alignment explanation
Indices: 58032923--58033001 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
58032913 TTGCATTCAC
* *
58032923 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
58032954 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
58032985 ATTTTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
58033002 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:58033010 original size:18 final size:18
Alignment explanation
Indices: 58032923--58033010 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
58032913 TTGCATTCAC
*
58032923 ATTCTGATTTTGATTCTG
1 ATTCTGATTCTGATTCTG
*
58032941 -TTACCTGATACTGATTCTG
1 ATT--CTGATTCTGATTCTG
*
58032960 ATTCTGATTCTG-TCACCTG
1 ATTCTGATTCTGAT--TCTG
*
58032979 ATTCTGATTTTGATTCTG
1 ATTCTGATTCTGATTCTG
58032997 ATTCT-AGTTCTGAT
1 ATTCTGA-TTCTGAT
58033011 AATGTTTCTT
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
17 4 0.07
18 22 0.39
19 27 0.48
20 3 0.05
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (18 bp):
ATTCTGATTCTGATTCTG
Found at i:58040229 original size:98 final size:98
Alignment explanation
Indices: 58040103--58040332 Score: 388
Period size: 98 Copynumber: 2.3 Consensus size: 98
58040093 CTGGAGGCCT
* * * *
58040103 AGCCTCTTTTAATAACTGGGGAAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACT
1 AGCC-CTTTTGATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACT
* *
58040168 GGGGCATAAGCCCTTTTTTAATAACTAGGGTATA
65 GGGGCATAAGCCCTTTTTTAATAACTAGGGCAGA
58040202 AGCCCTTTTGATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTG
1 AGCCCTTTTGATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTG
*
58040267 GGGCATAAGCCCTTTTTTAATAACTGGGGCAGA
66 GGGCATAAGCCCTTTTTTAATAACTAGGGCAGA
58040300 AGCCCTTTTGATAACTAGGGCATAAGCCCTTTT
1 AGCCCTTTTGATAACTAGGGCATAAGCCCTTTT
58040333 GCACTTCCTC
Statistics
Matches: 124, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
98 120 0.97
99 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (98 bp):
AGCCCTTTTGATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTG
GGGCATAAGCCCTTTTTTAATAACTAGGGCAGA
Found at i:58040333 original size:24 final size:24
Alignment explanation
Indices: 58040089--58040332 Score: 319
Period size: 24 Copynumber: 10.0 Consensus size: 24
58040079 ACTTTATCAT
*
58040089 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
58040114 ATAACTGGGGAAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
58040138 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
58040162 ATAACTGGGGCATAAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
* * *
58040188 ATAACTAGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
58040212 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
58040236 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
58040260 ATAACTGGGGCATAAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
* *
58040286 ATAACTGGGGCAGAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
58040310 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
58040333 GCACTTCCTC
Statistics
Matches: 195, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
24 140 0.72
25 12 0.06
26 43 0.22
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:58040333 original size:74 final size:72
Alignment explanation
Indices: 58040089--58040332 Score: 328
Period size: 74 Copynumber: 3.3 Consensus size: 72
58040079 ACTTTATCAT
* *
58040089 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGAAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGAATAAGCCCTTTTAATAACTGGGGCATAA
58040153 GCCCTTTTG
64 GCCCTTTTG
* * * *
58040162 ATAACTGGGGCATAAGCCCTTTTTTAATAACTAGGGTATAAGCCCTTTTGATAACTAGGGCATAA
1 ATAACTGGGGCATAAGCCC--TTTTAATAACTGGGGAATAAGCCCTTTTAATAACTGGGGCATAA
*
58040227 GCCCTTTTA
64 GCCCTTTTG
* * *
58040236 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTTAATAACTGGGGCAGAA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGAATAAGCCC--TTTTAATAACTGGGGCATAA
58040301 GCCCTTTTG
64 GCCCTTTTG
*
58040310 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
58040333 GCACTTCCTC
Statistics
Matches: 151, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
72 26 0.17
73 12 0.08
74 113 0.75
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGAATAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTTG
Found at i:58040406 original size:20 final size:20
Alignment explanation
Indices: 58040381--58040447 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
58040371 TTATGAATAC
58040381 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
58040401 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
58040421 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
58040441 ACCATGT
1 ATCATGT
58040448 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:58040412 original size:11 final size:11
Alignment explanation
Indices: 58040381--58040436 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
58040371 TTATGAATAC
58040381 ATCATGTGCAT
1 ATCATGTGCAT
*
58040392 ATCA--TACAT
1 ATCATGTGCAT
58040401 ATCATGTGCAT
1 ATCATGTGCAT
*
58040412 ATCA--TACAT
1 ATCATGTGCAT
*
58040421 GTCATGTGCAT
1 ATCATGTGCAT
58040432 ATCAT
1 ATCAT
58040437 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:58057410 original size:25 final size:25
Alignment explanation
Indices: 58057376--58057425 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
58057366 GAGGGATTGA
58057376 AAGCAATTGGGAAAGGAAACATCGG
1 AAGCAATTGGGAAAGGAAACATCGG
58057401 AAGCAATTGGGAAAGGAAACATCGG
1 AAGCAATTGGGAAAGGAAACATCGG
58057426 TTACTGAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.32, T:0.12
Consensus pattern (25 bp):
AAGCAATTGGGAAAGGAAACATCGG
Found at i:58065455 original size:40 final size:40
Alignment explanation
Indices: 58065378--58065555 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
58065368 AGACCAAGTA
* * *
58065378 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
58065417 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58065457 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
58065497 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
58065537 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
58065556 TTACCATTCG
Statistics
Matches: 129, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 15 0.12
40 114 0.88
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:58070378 original size:48 final size:46
Alignment explanation
Indices: 58070316--58070484 Score: 180
Period size: 48 Copynumber: 3.6 Consensus size: 46
58070306 TGATATGTGT
*
58070316 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATA--TAA
* * *
58070364 GCCAGTGTAAGACATGTCTGGGACATGCATC-GACATTGAGACGA-AA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATCGAGA-TATAA
* * *
58070410 GCTAGTGTAAGACATGTCTGGGTCATGCATCAGCTTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATAT--AA
* * *
58070458 GCTAGTGTAAAACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
58070485 ATGTCAGCTT
Statistics
Matches: 101, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 36 0.36
47 2 0.02
48 61 0.60
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATATAA
Found at i:58071183 original size:18 final size:18
Alignment explanation
Indices: 58071156--58071193 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
58071146 AAGATAGTCT
*
58071156 TTCATGGATGTAGAATTG
1 TTCATAGATGTAGAATTG
*
58071174 TTCATAGATGTGGAATTG
1 TTCATAGATGTAGAATTG
58071192 TT
1 TT
58071194 GGCATGGCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.42
Consensus pattern (18 bp):
TTCATAGATGTAGAATTG
Found at i:58076015 original size:43 final size:42
Alignment explanation
Indices: 58075968--58076115 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 42
58075958 TGTTCTCGTG
* * *
58075968 TAAGACCACATCTGGGACGTTGGTATCTATATGTGATTACGTA
1 TAAGACCACGTTTGGGACGTTGGCATC-ATATGTGATTACGTA
* * * *
58076011 TAAGACCATG-TTGGGACATTGGCATCATATTTGATT-CGTG
1 TAAGACCACGTTTGGGACGTTGGCATCATATGTGATTACGTA
* *
58076051 TAAGACC-TGTTTGGGACAG-TGGCATCGATATGTGA-TAGCATA
1 TAAGACCACGTTTGGGAC-GTTGGCATC-ATATGTGATTA-CGTA
58076093 TAAGACCACGTTTGGGACGTTGG
1 TAAGACCACGTTTGGGACGTTGG
58076116 TATTGTACAG
Statistics
Matches: 86, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
39 2 0.02
40 25 0.29
41 16 0.19
42 23 0.27
43 20 0.23
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (42 bp):
TAAGACCACGTTTGGGACGTTGGCATCATATGTGATTACGTA
Found at i:58078734 original size:24 final size:24
Alignment explanation
Indices: 58078707--58078793 Score: 93
Period size: 24 Copynumber: 3.6 Consensus size: 24
58078697 AGAAATTTCA
*
58078707 GCACTATGTGTGCGAGGTTATGCG
1 GCACTATGTGTGCGAGGATATGCG
* ** **
58078731 GCACTATGTGTGCAAAAACTATATG
1 GCACTATGTGTGCGAGGA-TATGCG
* *
58078756 GCAGTATGTGTGCGAGGAAATGCG
1 GCACTATGTGTGCGAGGATATGCG
58078780 GCACTATGTGTGCG
1 GCACTATGTGTGCG
58078794 GACCTTTAAA
Statistics
Matches: 48, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
24 30 0.62
25 18 0.38
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.26
Consensus pattern (24 bp):
GCACTATGTGTGCGAGGATATGCG
Found at i:58083856 original size:27 final size:27
Alignment explanation
Indices: 58083644--58083974 Score: 414
Period size: 27 Copynumber: 12.3 Consensus size: 27
58083634 CCAAAGTACT
58083644 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
58083671 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* ** * *
58083698 TTCGATTTTTAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
58083725 CTCAATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
58083752 CTCAATTTACAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
58083779 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
58083806 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
58083833 CTTGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
58083860 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
58083887 CTTGATTTACAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
58083914 CTC-AGTTTACAAAATTATCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
**
58083941 CTCGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
58083968 CTTGATT
1 CTCGATT
58083975 GTGAAATTAT
Statistics
Matches: 257, Mismatches: 43, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.01
27 253 0.98
28 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:58084009 original size:27 final size:27
Alignment explanation
Indices: 58083986--58084174 Score: 243
Period size: 27 Copynumber: 7.0 Consensus size: 27
58083976 TGAAATTATT
* *
58083986 GAAACACCCCTGTAGGGTAGAATTTCC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
58084013 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
58084040 GAAATACCCTTATAGGATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
58084067 AAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
58084094 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
58084121 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
58084148 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
58084175 ATTTTGCCCC
Statistics
Matches: 140, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:58084410 original size:27 final size:26
Alignment explanation
Indices: 58084372--58084455 Score: 96
Period size: 27 Copynumber: 3.2 Consensus size: 26
58084362 ACGAAGGAAG
58084372 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTATGCCAC-AATATC
*
58084399 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATC
* * * * *
58084425 TGTATTTGATGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTATGCCACAATATC
58084452 TGTT
1 TGTT
58084456 GACTGATCGA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.38
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATC
Found at i:58084571 original size:22 final size:22
Alignment explanation
Indices: 58084546--58084601 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
58084536 GTTATTAATA
58084546 GCTTTGTGCCAACCTAAATATG
1 GCTTTGTGCCAACCTAAATATG
* * * *
58084568 GCTTTGTGCCATCTTGACTATG
1 GCTTTGTGCCAACCTAAATATG
*
58084590 GCTTCGTGCCAA
1 GCTTTGTGCCAA
58084602 ACGTATTTAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (22 bp):
GCTTTGTGCCAACCTAAATATG
Found at i:58084788 original size:27 final size:27
Alignment explanation
Indices: 58084766--58084839 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
58084756 TAGGTGGGTT
*
58084766 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
58084793 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* **
58084820 TGTCATGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
58084840 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:58084966 original size:6 final size:6
Alignment explanation
Indices: 58084957--58085076 Score: 81
Period size: 6 Copynumber: 19.8 Consensus size: 6
58084947 TTGCATTCAC
* * *
58084957 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATT-CTG AT-TCTG
* *
58085006 ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCGG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG
*
58085054 -TTACTA ATTCTG ATTCTG ATTCT
1 ATT-CTG ATTCTG ATTCTG ATTCT
58085077 CATTTTGGTT
Statistics
Matches: 89, Mismatches: 12, Indels: 26
0.70 0.09 0.20
Matches are distributed among these distances:
5 9 0.10
6 71 0.80
7 6 0.07
8 3 0.03
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:58084987 original size:19 final size:18
Alignment explanation
Indices: 58084963--58085011 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
58084953 TCACATTCTG
58084963 ATTCTGATTCTGTCACGTA
1 ATTCTGATTCTGTCAC-TA
*
58084982 ATTCTGATTCTGTTACTA
1 ATTCTGATTCTGTCACTA
58085000 ATAT-TGATTCTG
1 AT-TCTGATTCTG
58085012 ATTCTGATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 12 0.43
19 16 0.57
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.47
Consensus pattern (18 bp):
ATTCTGATTCTGTCACTA
Found at i:58085017 original size:30 final size:30
Alignment explanation
Indices: 58084982--58085076 Score: 165
Period size: 30 Copynumber: 3.2 Consensus size: 30
58084972 CTGTCACGTA
58084982 ATTCTGATTCTGTTACTAATATTGATTCTG
1 ATTCTGATTCTGTTACTAATATTGATTCTG
*
58085012 ATTCTGATTCTGTTACTAATATTGATTCGG
1 ATTCTGATTCTGTTACTAATATTGATTCTG
58085042 ATTCTGATTCTGTTACTAAT-TCTGATTCTG
1 ATTCTGATTCTGTTACTAATAT-TGATTCTG
58085072 ATTCT
1 ATTCT
58085077 CATTTTGGTT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
29 1 0.02
30 61 0.98
ACGTcount: A:0.22, C:0.15, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGTTACTAATATTGATTCTG
Found at i:58085063 original size:24 final size:25
Alignment explanation
Indices: 58084957--58085076 Score: 102
Period size: 24 Copynumber: 4.7 Consensus size: 25
58084947 TTGCATTCAC
* *
58084957 ATTCTGATTCTGATTCTGTCACGTA
1 ATTCTGATTCTGATTCTGTTACATA
** * *
58084982 ATTCTGATTCTG-TTACTAATA-TTG
1 ATTCTGATTCTGATT-CTGTTACATA
58085006 ATTCTGATTCTGATTCTGTTACTAATA
1 ATTCTGATTCTGATTCTGTTAC--ATA
*
58085033 TTGATTCGGATTCTGATTCTGTTAC-TA
1 ---ATTCTGATTCTGATTCTGTTACATA
58085060 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
58085077 CATTTTGGTT
Statistics
Matches: 76, Mismatches: 11, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
24 35 0.46
25 17 0.22
27 3 0.04
30 21 0.28
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACATA
Found at i:58104041 original size:40 final size:40
Alignment explanation
Indices: 58103895--58104073 Score: 195
Period size: 40 Copynumber: 4.5 Consensus size: 40
58103885 TTGAATGATG
* * * *
58103895 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
58103935 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
58103975 TCCGGGCT-AGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
58104014 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
58104055 -CCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
58104074 TGTTTGAACG
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.29
40 72 0.62
41 10 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58104101 original size:79 final size:79
Alignment explanation
Indices: 58103948--58104112 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
58103938 GGACTAAGAT
* * **
58103948 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAGGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAGGCCCGAAGGCATTTGAACGAGTTACTAA
*
58104013 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * **
58104027 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGTGTTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTA-GGCCCGAAGGCATTTGAACGAGTTA-C
* *
58104090 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
58104106 CCGAAGG
1 CCGAAGG
58104113 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAGGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:58106742 original size:40 final size:40
Alignment explanation
Indices: 58106697--58107361 Score: 1152
Period size: 40 Copynumber: 16.6 Consensus size: 40
58106687 CAAGCTCAAT
* * * * * *
58106697 TGCCTTCGGGCCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58106737 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
58106777 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
58106817 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58106857 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
58106897 TGCCTTCAGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58106937 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58106977 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58107017 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58107057 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58107097 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58107137 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58107177 TGCCTTCGGGTCTTAGCCCGGATATATCAATTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58107217 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58107257 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58107297 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58107337 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
58107362 CATTCAAATG
Statistics
Matches: 595, Mismatches: 28, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.00
40 592 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:58116084 original size:40 final size:40
Alignment explanation
Indices: 58116053--58116183 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
58116043 GGACTAAGAT
58116053 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* * *
58116093 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* * *
58116133 CCGAAGGCATTCGTGCGAGTT-TTAAAATCTGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
58116173 CCGAAGGCATT
1 CCGAAGGCATT
58116184 GTATGAGTTA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 80 0.99
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
Found at i:58116137 original size:80 final size:81
Alignment explanation
Indices: 58116000--58116180 Score: 228
Period size: 80 Copynumber: 2.3 Consensus size: 81
58115990 TTGAATGCTG
* *
58116000 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAATGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAATGACTATATCCGGACTAAGATCCGAAGGCATT
* *
58116064 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
* **
58116080 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAATGACTATA-TCCGGACTAAGAT-CCGAAGGCA
58116142 TTCGTGCGAGTTTTAAAA
64 TTCGTGCGAGTTTTAAAA
*
58116160 TCTGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
58116181 ATTGTATGAG
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
79 4 0.04
80 74 0.83
81 11 0.12
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAATGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:58117624 original size:40 final size:40
Alignment explanation
Indices: 58117579--58118163 Score: 1001
Period size: 40 Copynumber: 14.6 Consensus size: 40
58117569 CAAGTTCAAT
* * * * *
58117579 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58117619 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
*
58117659 TGCCTTTGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
58117699 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58117739 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
58117779 TGCCTTCGGGTCTTATCCCGGATATATCAATTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58117819 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58117859 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
58117899 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58117939 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58117979 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58118019 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
58118059 TGCCTTCGGATCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58118099 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
58118139 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
58118164 CATTCAAATG
Statistics
Matches: 518, Mismatches: 25, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
39 2 0.00
40 515 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:58124043 original size:40 final size:39
Alignment explanation
Indices: 58123852--58124030 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 39
58123842 TTGAATGATG
* * * *
58123852 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCT-AGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
58123892 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCT-AG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
58123932 TCCGGGCTAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
58123971 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
58124012 -CCGGGCTATGTCCCGAAGG
1 TCCGGGCTA-GTCCCGAAGG
58124031 TGTTTGAACG
Statistics
Matches: 116, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.29
40 72 0.62
41 10 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58124058 original size:79 final size:79
Alignment explanation
Indices: 58123907--58124069 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
58123897 ACTAAGATCT
* * **
58123907 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAGGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCAATTGTGCGAGATACTAATACCGGGCTAGGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
58123972 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* * **
58123986 GAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGTGTTTGAACGAG-TAGCTA
1 GAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTA-GGCCCGAAGGCATTTGAACGAGTTA-CTA
* *
58124049 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
58124065 GAAGG
1 GAAGG
58124070 TACGTGATTT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 44 0.63
80 24 0.34
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (79 bp):
GAAGGCAATTGTGCGAGATACTAATACCGGGCTAGGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:58156078 original size:39 final size:39
Alignment explanation
Indices: 58155961--58156222 Score: 311
Period size: 39 Copynumber: 6.6 Consensus size: 39
58155951 GCTCCTCGTT
* * *
58155961 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGTA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
58156001 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
58156041 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
58156080 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
58156119 CAAATGCCTTCAGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
58156158 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
58156199 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
58156223 CATCATTCAA
Statistics
Matches: 201, Mismatches: 14, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 60 0.30
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:58159488 original size:40 final size:40
Alignment explanation
Indices: 58159444--58159625 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
58159434 TATTCGGATG
* *
58159444 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
58159484 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
58159524 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* ** *
58159564 ATTTCCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
58159604 ATATCC-GGCTAATTCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
58159626 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.10
40 116 0.89
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:58168215 original size:40 final size:40
Alignment explanation
Indices: 58168171--58168353 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
58168161 GCTACTCGTT
* *
58168171 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
58168211 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
58168251 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
58168290 CAAATGCCATC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
58168331 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
58168354 AACATCATTC
Statistics
Matches: 120, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 74 0.62
41 14 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:58168282 original size:79 final size:81
Alignment explanation
Indices: 58168171--58168353 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
58168161 GCTACTCGTT
* * * *
58168171 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCTCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCATC-GGATCTTAACCCG
* *
58168235 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
58168251 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCATCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCATCGGATCTTAACCCG
* *
58168314 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
58168331 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
58168354 AACATCATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 4 0.05
79 53 0.60
80 31 0.35
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCATCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:58171151 original size:79 final size:81
Alignment explanation
Indices: 58171015--58171199 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
58171005 TTGAATGATG
*
58171015 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
58171079 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
58171094 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
58171156 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
58171174 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58171200 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:58171213 original size:40 final size:40
Alignment explanation
Indices: 58171016--58171199 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
58171006 TGAATGATGT
* * * *
58171016 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
58171056 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
58171096 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
58171134 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
58171175 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
58171200 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:58171221 original size:79 final size:79
Alignment explanation
Indices: 58171068--58171232 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
58171058 GGACTAAGAT
* **
58171068 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
58171133 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
58171147 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
58171210 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
58171226 CCGAAGG
1 CCGAAGG
58171233 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:58173747 original size:40 final size:40
Alignment explanation
Indices: 58173692--58173873 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
58173682 TATTCAGATG
58173692 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* *
58173732 ATATCCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGACT
1 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
58173772 ATATCCGGGCTAAGTGCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
58173812 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACT
* *
58173852 ATGTCC-GGCTAATTCCCGAAGG
1 ATATCCAGGCTAAGTCCCGAAGG
58173874 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.11
40 113 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:58177688 original size:27 final size:27
Alignment explanation
Indices: 58177606--58177697 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
58177596 TGGATAAGTT
** * *
58177606 GTAGAATTACTAAAATACCCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
58177633 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
58177660 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
58177687 GTAAAATTACC
1 GTAGAATTACC
58177698 ATTTTGCCCC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:58178394 original size:27 final size:26
Alignment explanation
Indices: 58178350--58178401 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58178340 CTCGCTGCAA
*
58178350 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
58178377 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
58178402 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:58180904 original size:37 final size:37
Alignment explanation
Indices: 58180854--58180932 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
58180844 TTTTTACGAA
* * *
58180854 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
58180891 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
58180928 GTCTT
1 GTCTT
58180933 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:58181129 original size:47 final size:47
Alignment explanation
Indices: 58181051--58181418 Score: 619
Period size: 47 Copynumber: 7.7 Consensus size: 47
58181041 CCCTTCGGGA
* * * * * *
58181051 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58181098 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58181145 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58181192 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58181239 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58181288 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58181335 CTTGTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58181384 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
58181419 AGAATCCTAA
Statistics
Matches: 305, Mismatches: 12, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 212 0.70
49 93 0.30
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58181280 original size:96 final size:96
Alignment explanation
Indices: 58181051--58181418 Score: 636
Period size: 96 Copynumber: 3.9 Consensus size: 96
58181041 CCCTTCGGGA
* * * * * * *
58181051 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
58181114 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
58181145 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
58181208 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
58181239 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
58181304 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
58181335 CTTGTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
58181400 ACTTTCACATTCATCACAT
66 ACTTTCACATTCATCACAT
58181419 AGAATCCTAA
Statistics
Matches: 262, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
93 1 0.00
94 92 0.35
96 169 0.65
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58181307 original size:143 final size:141
Alignment explanation
Indices: 58181051--58181418 Score: 619
Period size: 143 Copynumber: 2.6 Consensus size: 141
58181041 CCCTTCGGGA
* * * * * * * *
58181051 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
58181116 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
58181181 GGCCATTAGGC
131 GGCCATTAGGC
58181192 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
58181257 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
58181322 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
58181335 CTTGTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
58181400 ACTTTCACATTCATCACAT
64 ACTTTCACATTCATCACAT
58181419 AGAATCCTAA
Statistics
Matches: 214, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
141 47 0.22
143 120 0.56
145 47 0.22
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:58184325 original size:40 final size:40
Alignment explanation
Indices: 58184244--58184458 Score: 362
Period size: 40 Copynumber: 5.4 Consensus size: 40
58184234 AAACCAAGTA
* * *
58184244 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
58184283 CCTTCGGGACTTAGCCCGGATATGGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58184323 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58184363 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58184403 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58184443 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
58184459 TGGTTATCAT
Statistics
Matches: 167, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.92
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:58201848 original size:27 final size:26
Alignment explanation
Indices: 58201776--58201861 Score: 111
Period size: 26 Copynumber: 3.3 Consensus size: 26
58201766 TGGAGGAAGC
58201776 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
* *
58201803 -TTTTTGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
58201828 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
58201855 GTTCTGG
1 GTTCTGG
58201862 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
25 7 0.14
26 22 0.43
27 22 0.43
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Done.