Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 185 of 295
Found at i:58499895 original size:40 final size:40
Alignment explanation
Indices: 58499637--58499888 Score: 389
Period size: 40 Copynumber: 6.3 Consensus size: 40
58499627 TTTCCAAACC
* * * ** *
58499637 CAAATACCTTCGGGATTTAG-CTGGATATAGAAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
*
58499676 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
* *
58499716 CAGATGCCTTCGGGACTTAGCCTGGATATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
*
58499756 CAAATGCCTTCGGGACTTAGCCCGAATATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
*
58499796 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
*
58499836 CAAATGCCTTCGGGACTTAGCCCGAATATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
58499876 CAAATGCCTTCGG
1 CAAATGCCTTCGG
58499889 ATCTTAGTCC
Statistics
Matches: 197, Mismatches: 15, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
39 18 0.09
40 179 0.91
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
Found at i:58501279 original size:13 final size:13
Alignment explanation
Indices: 58501261--58501286 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58501251 ATTTTTATTT
58501261 TTAACATAAAATA
1 TTAACATAAAATA
58501274 TTAACATAAAATA
1 TTAACATAAAATA
58501287 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:58506653 original size:40 final size:40
Alignment explanation
Indices: 58506616--58506761 Score: 206
Period size: 40 Copynumber: 3.6 Consensus size: 40
58506606 GCTACTCGTT
* *
58506616 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
58506656 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
58506696 CAAATGCCTTCGGGACTTAACCCGGATTTGGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
*
58506737 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
58506762 CATCATTCAA
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
40 88 0.90
41 10 0.10
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:58512298 original size:40 final size:40
Alignment explanation
Indices: 58512226--58512369 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
58512216 GCTACTCGTT
* * * *
58512226 CAAATGCCTTTGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
58512266 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
58512306 CAAATGCCTTCGGGACTTAACCCGGATTTGGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
* *
58512347 CAAA-CCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCCG
58512370 AACATCATTC
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 83 0.89
41 10 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:58513420 original size:23 final size:23
Alignment explanation
Indices: 58513390--58513442 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
58513380 ACAAGTATGG
58513390 CCAAACCTCCTCCTAATCCTCTT
1 CCAAACCTCCTCCTAATCCTCTT
58513413 CCAAACCTCCTCCTAATCCTCTT
1 CCAAACCTCCTCCTAATCCTCTT
58513436 CCAAACC
1 CCAAACC
58513443 AAACATGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.25, C:0.49, G:0.00, T:0.26
Consensus pattern (23 bp):
CCAAACCTCCTCCTAATCCTCTT
Found at i:58514539 original size:28 final size:28
Alignment explanation
Indices: 58514508--58514640 Score: 101
Period size: 28 Copynumber: 4.7 Consensus size: 28
58514498 ATAATGTGAT
*
58514508 TTGGGCCAGATGGGCGATATAAATGAGA
1 TTGGGCCAGATGGGCCATATAAATGAGA
* * * *
58514536 TTGGGCTA-ACGGGCCATATGAATGTGAA
1 TTGGGCCAGATGGGCCATATAAATGAG-A
* * *
58514564 TTAGGCCTGATGGGCCATATGAACGTGA-A
1 TTGGGCCAGATGGGCCATAT-AA-ATGAGA
* * * *
58514593 TTAGGCCGGAAGGGCCATATAAATGCGA
1 TTGGGCCAGATGGGCCATATAAATGAGA
58514621 TTGGGCCTAG-TGGGCCATAT
1 TTGGGCC-AGATGGGCCATAT
58514641 GCATGTATGT
Statistics
Matches: 80, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
27 16 0.20
28 31 0.39
29 30 0.38
30 1 0.01
31 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (28 bp):
TTGGGCCAGATGGGCCATATAAATGAGA
Found at i:58514559 original size:27 final size:29
Alignment explanation
Indices: 58514519--58514641 Score: 83
Period size: 29 Copynumber: 4.3 Consensus size: 29
58514509 TGGGCCAGAT
* * *
58514519 GGGCGATATAAATGAG-ATT-GGGCTAAC
1 GGGCCATATGAATGAGAATTAGGCCTAAC
* * *
58514546 GGGCCATATGAATGTGAATTAGGCCTGAT
1 GGGCCATATGAATGAGAATTAGGCCTAAC
* * *
58514575 GGGCCATATGAACGTGAATTAGGCCGGAA-
1 GGGCCATATGAATGAGAATTAGGCC-TAAC
* * * **
58514604 GGGCCATATAAATGCG-ATTGGGCCTAGT
1 GGGCCATATGAATGAGAATTAGGCCTAAC
58514632 GGGCCATATG
1 GGGCCATATG
58514642 CATGTATGTA
Statistics
Matches: 76, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
27 14 0.18
28 19 0.25
29 42 0.55
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.23
Consensus pattern (29 bp):
GGGCCATATGAATGAGAATTAGGCCTAAC
Found at i:58514581 original size:29 final size:29
Alignment explanation
Indices: 58514546--58514646 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
58514536 TTGGGCTAAC
58514546 GGGCCATATGAATGTGAATTAGGCCTGAT
1 GGGCCATATGAATGTGAATTAGGCCTGAT
* * *
58514575 GGGCCATATGAACGTGAATTAGGCCGGAA
1 GGGCCATATGAATGTGAATTAGGCCTGAT
* * *
58514604 GGGCCATATAAATGCG-ATTGGGCCT-AGT
1 GGGCCATATGAATGTGAATTAGGCCTGA-T
*
58514632 GGGCCATATGCATGT
1 GGGCCATATGAATGT
58514647 ATGTAGGGGT
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
27 1 0.02
28 19 0.32
29 39 0.66
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.24
Consensus pattern (29 bp):
GGGCCATATGAATGTGAATTAGGCCTGAT
Found at i:58518578 original size:20 final size:20
Alignment explanation
Indices: 58518553--58518590 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
58518543 GACTAAACCG
58518553 AGAACTTTAG-AAATTTTTAC
1 AGAAC-TTAGAAAATTTTTAC
58518573 AGAACTTAGAAAATTTTT
1 AGAACTTAGAAAATTTTT
58518591 GCACTAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (20 bp):
AGAACTTAGAAAATTTTTAC
Found at i:58538983 original size:18 final size:20
Alignment explanation
Indices: 58538943--58538986 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
58538933 TGGGCCACAT
*
58538943 TGGGTCGAAATGGGCCTTTG
1 TGGGCCGAAATGGGCCTTTG
58538963 TGGGCCGAAATGGG-C-TTG
1 TGGGCCGAAATGGGCCTTTG
58538981 TGGGCC
1 TGGGCC
58538987 CCACACAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.39
19 1 0.04
20 13 0.57
ACGTcount: A:0.14, C:0.18, G:0.43, T:0.25
Consensus pattern (20 bp):
TGGGCCGAAATGGGCCTTTG
Found at i:58541699 original size:74 final size:74
Alignment explanation
Indices: 58541586--58541725 Score: 280
Period size: 74 Copynumber: 1.9 Consensus size: 74
58541576 AAAGCTATCG
58541586 GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
1 GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
58541651 TAGCTATTT
66 TAGCTATTT
58541660 GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
1 GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
58541725 T
66 T
58541726 GGCTCAACCA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 66 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (74 bp):
GATATTCACAAAGCCTCAAACATAGGGTATAATGCCTATGCCATGTCCCAAATATGGTCTTACAC
TAGCTATTT
Found at i:58541861 original size:50 final size:48
Alignment explanation
Indices: 58541795--58541921 Score: 158
Period size: 50 Copynumber: 2.7 Consensus size: 48
58541785 CGAGGCTGAC
*
58541795 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATAT-TCGTA-CCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAG----CACATATCTCGTAGCCGAT
58541845 GCCATGTCCCAGACATGGTCTTACACT-G-ACATATCTCGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCGTAGCCGAT
*
58541891 G-CATGTGCCAGACAT-GTCTTACACTAGCACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCACA
58541922 CAAATAACCT
Statistics
Matches: 71, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
44 16 0.23
45 19 0.27
46 9 0.13
49 1 0.01
50 26 0.37
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCGTAGCCGAT
Found at i:58546010 original size:79 final size:81
Alignment explanation
Indices: 58545874--58546058 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
58545864 TTGAATGATG
* *
58545874 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
*
58545938 TGTGCGAGATGCTA-A
66 TGTGCGAGATACTATA
* * * **
58545953 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
58546015 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
58546033 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58546059 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:58546065 original size:40 final size:40
Alignment explanation
Indices: 58545874--58546058 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
58545864 TTGAATGATG
* * * *
58545874 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
58545914 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATGCTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
58545954 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
58545993 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
58546034 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58546059 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58546080 original size:79 final size:79
Alignment explanation
Indices: 58545927--58546091 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
58545917 GGACTAAGAT
* * * **
58545927 CCGAAGGCATTTGTGCGAGATGCTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
58545992 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
58546006 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
58546069 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
58546085 CCGAAGG
1 CCGAAGG
58546092 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:58547748 original size:46 final size:45
Alignment explanation
Indices: 58547698--58547873 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
58547688 TGGTTGAGCA
*
58547698 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
58547744 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
58547791 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
58547837 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58547874 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:58547807 original size:93 final size:93
Alignment explanation
Indices: 58547695--58547865 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
58547685 GGATGGTTGA
* * *
58547695 GCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58547760 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
58547788 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58547853 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
58547866 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:58560232 original size:44 final size:44
Alignment explanation
Indices: 58560183--58560271 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
58560173 CAAACATATA
*
58560183 ATTATGCCACAAATTCAAATTAGCCGAATGCACATATAGATAAT
1 ATTATGCCACAAATTCAAATTAGACGAATGCACATATAGATAAT
*
58560227 ATTATGCCACAAATTCAAATTGGACGAATGCACATATAGATAAT
1 ATTATGCCACAAATTCAAATTAGACGAATGCACATATAGATAAT
58560271 A
1 A
58560272 ACATAATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.44, C:0.17, G:0.12, T:0.27
Consensus pattern (44 bp):
ATTATGCCACAAATTCAAATTAGACGAATGCACATATAGATAAT
Found at i:58560591 original size:56 final size:56
Alignment explanation
Indices: 58560524--58560632 Score: 155
Period size: 56 Copynumber: 1.9 Consensus size: 56
58560514 TCTTACATGT
* ** * * *
58560524 AATCACATATCGATGCCAATGTACTAGACGTGGTCTTATTCGCACACATATATCGG
1 AATCACATATCGATACCAACATACTAAAAGTGGTCTTACTCGCACACATATATCGG
*
58560580 AATCACATATCGATACCAACATATTAAAAGTGGTCTTACTCGCACACATATAT
1 AATCACATATCGATACCAACATACTAAAAGTGGTCTTACTCGCACACATATAT
58560633 ATATGCCATT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (56 bp):
AATCACATATCGATACCAACATACTAAAAGTGGTCTTACTCGCACACATATATCGG
Found at i:58562026 original size:90 final size:89
Alignment explanation
Indices: 58561873--58562124 Score: 251
Period size: 90 Copynumber: 2.8 Consensus size: 89
58561863 ATCATCAACG
** * * * * *
58561873 AATGAAAAGGGATAACTTCGGCTATCAGTTATGAAAAGGGATGG-TGACGACCATAAAATTATGA
1 AATGAAAAGGGATGGCTTCGGCTATCAATTATGAAAAGGGATGGCT-TCGGCTATCAAATTATGA
* * * * *
58561937 AAATGGATGGCT-TCAGCTATCG-TAC
65 AAAGGGATGG-TGACAACCAT-GAAAC
*
58561962 TATGAAAAGGGATGGCTTCGGCTATCAATCTATGAAAAGGGATGGCTTCGGCTATCAAATTATGA
1 AATGAAAAGGGATGGCTTCGGCTATCAAT-TATGAAAAGGGATGGCTTCGGCTATCAAATTATGA
58562027 AAAGGGATGGTGACAACCATGAAAC
65 AAAGGGATGGTGACAACCATGAAAC
* * * * * *
58562052 AATGAAAAGGGATGG-TGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTGTCGAATTATG
1 AATGAAAAGGGATGGCT-TCGGCTATC-AATTATGAAAAGGGATGGCTTCGGCTATCAAATTATG
58562116 AAAAGGGAT
64 AAAAGGGAT
58562125 AACTTCGATT
Statistics
Matches: 137, Mismatches: 20, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
89 28 0.20
90 105 0.77
91 4 0.03
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (89 bp):
AATGAAAAGGGATGGCTTCGGCTATCAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAA
AAGGGATGGTGACAACCATGAAAC
Found at i:58562125 original size:30 final size:30
Alignment explanation
Indices: 58561874--58562155 Score: 198
Period size: 30 Copynumber: 9.4 Consensus size: 30
58561864 TCATCAACGA
** *
58561874 ATGAAAAGGGATAACTTCGGCTATC-AGTT
1 ATGAAAAGGGATGGCTTCGGCTATCGAATT
* * * **
58561903 ATGAAAAGGGATGG-TGACGACCATAAAATT
1 ATGAAAAGGGATGGCT-TCGGCTATCGAATT
* * * *
58561933 ATGAAAATGGATGGCTTCAGCTATCGTACT
1 ATGAAAAGGGATGGCTTCGGCTATCGAATT
58561963 ATGAAAAGGGATGGCTTCGGCTATC-AATCT
1 ATGAAAAGGGATGGCTTCGGCTATCGAAT-T
*
58561993 ATGAAAAGGGATGGCTTCGGCTATCAAATT
1 ATGAAAAGGGATGGCTTCGGCTATCGAATT
* ** * **
58562023 ATGAAAAGGGATGG-TGACAACCAT-GAAACA
1 ATGAAAAGGGATGGCT-TCGGCTATCG-AATT
* * * *
58562053 ATGAAAAGGGATGG-TGACGACCATCAAATT
1 ATGAAAAGGGATGGCT-TCGGCTATCGAATT
* *
58562083 ATGAAAAGGGATAGCTTCGGCTGTCGAATT
1 ATGAAAAGGGATGGCTTCGGCTATCGAATT
** **
58562113 ATGAAAAGGGATAACTTCGATTATCGAATT
1 ATGAAAAGGGATGGCTTCGGCTATCGAATT
**
58562143 ACAAAAAGGGATG
1 ATGAAAAGGGATG
58562156 TGTCAACCAT
Statistics
Matches: 200, Mismatches: 44, Indels: 17
0.77 0.17 0.07
Matches are distributed among these distances:
28 1 0.00
29 19 0.09
30 175 0.88
31 5 0.03
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTTCGGCTATCGAATT
Found at i:58563797 original size:13 final size:13
Alignment explanation
Indices: 58563779--58563803 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58563769 GTAATCACGT
58563779 CACACGGGCGTGG
1 CACACGGGCGTGG
58563792 CACACGGGCGTG
1 CACACGGGCGTG
58563804 TCCCTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.44, T:0.08
Consensus pattern (13 bp):
CACACGGGCGTGG
Found at i:58564655 original size:13 final size:13
Alignment explanation
Indices: 58564639--58564669 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
58564629 TTTAATTAAA
58564639 TTAGTTAATTAGT
1 TTAGTTAATTAGT
*
58564652 TTAGATAATTAGT
1 TTAGTTAATTAGT
58564665 TTAGT
1 TTAGT
58564670 AAACAAACCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:58570055 original size:25 final size:20
Alignment explanation
Indices: 58569992--58570061 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 20
58569982 CCTCCTATGT
* *
58569992 TTTTATTTATTCTTATTTTTA
1 TTTTCTTTATT-TTAATTTTA
58570013 TTTTCTTTATTTTAATTTTA
1 TTTTCTTTATTTTAATTTTA
58570033 TTTTCATTTCAATTTTATTATTTTA
1 TTTTC-TTT--ATTTTA--ATTTTA
58570058 TTTT
1 TTTT
58570062 GAAAGACATA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
20 13 0.31
21 13 0.31
23 6 0.14
25 10 0.24
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTCTTTATTTTAATTTTA
Found at i:58572964 original size:13 final size:13
Alignment explanation
Indices: 58572948--58572980 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
58572938 TTTAATTAAA
*
58572948 TTAGTTAATTAGT
1 TTAGATAATTAGT
58572961 TTAGATAATTAGT
1 TTAGATAATTAGT
58572974 TTA-ATAA
1 TTAGATAA
58572981 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:58575197 original size:14 final size:14
Alignment explanation
Indices: 58575178--58575215 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
58575168 CTGAATGATG
58575178 TTTCTTCTTCTCAT
1 TTTCTTCTTCTCAT
*
58575192 TTTCTTCTCCTCAT
1 TTTCTTCTTCTCAT
58575206 TTTGCTTCTT
1 TTT-CTTCTT
58575216 GTCCTTAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.05, C:0.29, G:0.03, T:0.63
Consensus pattern (14 bp):
TTTCTTCTTCTCAT
Found at i:58582397 original size:14 final size:14
Alignment explanation
Indices: 58582378--58582406 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
58582368 TATCATGGCT
58582378 CAAAGCCAAATCAG
1 CAAAGCCAAATCAG
58582392 CAAAGCCAAATCAG
1 CAAAGCCAAATCAG
58582406 C
1 C
58582407 CAAAATGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.31, G:0.14, T:0.07
Consensus pattern (14 bp):
CAAAGCCAAATCAG
Found at i:58599476 original size:46 final size:45
Alignment explanation
Indices: 58599426--58599601 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
58599416 TGGTTGAGCA
*
58599426 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
58599472 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
58599519 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
58599565 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58599602 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:58599535 original size:93 final size:93
Alignment explanation
Indices: 58599423--58599593 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
58599413 GGATGGTTGA
* * *
58599423 GCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58599488 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
58599516 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
58599581 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
58599594 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:58611544 original size:27 final size:27
Alignment explanation
Indices: 58611502--58611593 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
58611492 TCCTAAATTA
* *
58611502 GGTAAAATGACTGTAATACCCTTG-CG
1 GGTAAAATGACCGTAATACCCCTGTCG
* *
58611528 GAGTAAAATGACCGTAATGCCCCTGTTG
1 G-GTAAAATGACCGTAATACCCCTGTCG
* * **
58611556 GGTAAAATGACCATAATACCACTGTAT
1 GGTAAAATGACCGTAATACCCCTGTCG
58611583 GGTAAAATGAC
1 GGTAAAATGAC
58611594 AATTATGCCC
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
26 1 0.02
27 52 0.95
28 2 0.04
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTCG
Found at i:58615406 original size:30 final size:30
Alignment explanation
Indices: 58615348--58615408 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
58615338 TTCCCGAGCC
*
58615348 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATCCAAAAGTT
* * * *
58615378 TAGGGGCAAAATTGTAATTTTCCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATCCAAAAGTT
58615408 T
1 T
58615409 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATCCAAAAGTT
Found at i:58639221 original size:46 final size:46
Alignment explanation
Indices: 58639171--58639344 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
58639161 TGGTTGAGCA
58639171 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58639217 TCCGAACTCG-TGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
58639261 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58639308 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58639345 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 28 0.26
46 62 0.57
47 3 0.03
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58651232 original size:27 final size:27
Alignment explanation
Indices: 58651190--58651281 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
58651180 TCCTAAATTA
* *
58651190 GGTAAAATGACTGTAATACCCTTG-CG
1 GGTAAAATGACCGTAATACCCCTGTCG
* *
58651216 GAGTAAAATGACCGTAATGCCCCTGTTG
1 G-GTAAAATGACCGTAATACCCCTGTCG
* * **
58651244 GGTAAAATGACCATAATACCACTGTAT
1 GGTAAAATGACCGTAATACCCCTGTCG
58651271 GGTAAAATGAC
1 GGTAAAATGAC
58651282 AATTATGCCC
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
26 1 0.02
27 52 0.95
28 2 0.04
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTCG
Found at i:58655090 original size:30 final size:30
Alignment explanation
Indices: 58655032--58655092 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
58655022 TTCCCGAGCC
*
58655032 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATCCAAAAGTT
* * * *
58655062 TAGGGGCAAAATTGTAATTTTCCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATCCAAAAGTT
58655092 T
1 T
58655093 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATCCAAAAGTT
Found at i:58680680 original size:29 final size:29
Alignment explanation
Indices: 58680632--58680742 Score: 136
Period size: 29 Copynumber: 3.8 Consensus size: 29
58680622 TATGGCCTAC
*
58680632 TAGGCCC-AATCTCATTCATATAGCCCAT
1 TAGGCCCAAATCACATTCATATAGCCCAT
** *
58680660 TAGGCCCAAATCTTATTCATATGGCCCAT
1 TAGGCCCAAATCACATTCATATAGCCCAT
*
58680689 TAGGACCAAATCACATTCATACGGT-GCCCAT
1 TAGGCCCAAATCACATTCATA---TAGCCCAT
58680720 TAGGCCCAAATCACATTCATATA
1 TAGGCCCAAATCACATTCATATA
58680743 CATGCTTTCA
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
28 8 0.11
29 37 0.51
31 26 0.36
32 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
TAGGCCCAAATCACATTCATATAGCCCAT
Found at i:58680818 original size:17 final size:17
Alignment explanation
Indices: 58680796--58680837 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
58680786 TGCCTATTAT
58680796 GGGCCCAAC-AGCCCATC
1 GGGCCC-ACTAGCCCATC
58680813 GGGCCCACTTAGCCCATC
1 GGGCCCAC-TAGCCCATC
58680831 GTGGCCC
1 G-GGCCC
58680838 GGTTGGCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.09
17 6 0.27
18 9 0.41
19 5 0.23
ACGTcount: A:0.17, C:0.45, G:0.26, T:0.12
Consensus pattern (17 bp):
GGGCCCACTAGCCCATC
Found at i:58680957 original size:16 final size:16
Alignment explanation
Indices: 58680932--58680975 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
58680922 ATAGCCAAAC
**
58680932 TTTTGGCTTTTTGGCA
1 TTTTGGCTTTTCAGCA
*
58680948 TTTTGACTTTTCAGCA
1 TTTTGGCTTTTCAGCA
58680964 TTTTGGCTTTTC
1 TTTTGGCTTTTC
58680976 GGCTTTTCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.09, C:0.16, G:0.18, T:0.57
Consensus pattern (16 bp):
TTTTGGCTTTTCAGCA
Found at i:58680969 original size:24 final size:24
Alignment explanation
Indices: 58680940--58680990 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
58680930 ACTTTTGGCT
58680940 TTTTGGCATTTT-GACTTTTCAGCA
1 TTTTGGC-TTTTCGACTTTTCAGCA
* *
58680964 TTTTGGCTTTTCGGCTTTTCGGCA
1 TTTTGGCTTTTCGACTTTTCAGCA
58680988 TTT
1 TTT
58680991 GCCAATCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.10, C:0.18, G:0.20, T:0.53
Consensus pattern (24 bp):
TTTTGGCTTTTCGACTTTTCAGCA
Found at i:58682620 original size:43 final size:43
Alignment explanation
Indices: 58682554--58682720 Score: 149
Period size: 43 Copynumber: 3.9 Consensus size: 43
58682544 AGCTCGTACA
* * * * *
58682554 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATATCG
* * * ** * *
58682596 ATGCCACTGTCCTAGACAGGGTCTTACACAAAATCATATAACG
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATATCG
* * *
58682639 ATGCCAATATCCCAGACAAGGTTTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATAT-CG
* * *
58682682 ATGCCAATGTCCCAGACATGGTATTACATGTAATCACAT
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACAT
58682721 TTCGGTAATC
Statistics
Matches: 97, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
42 6 0.06
43 91 0.94
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATATCG
Found at i:58685898 original size:40 final size:40
Alignment explanation
Indices: 58685844--58686070 Score: 384
Period size: 40 Copynumber: 5.7 Consensus size: 40
58685834 AGCATTTGAA
*
58685844 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
58685884 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
58685924 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT-
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
58685963 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
58686003 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
58686043 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
58686071 AGGTGTTTGC
Statistics
Matches: 176, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 36 0.20
40 140 0.80
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:58686009 original size:79 final size:80
Alignment explanation
Indices: 58685844--58686070 Score: 393
Period size: 79 Copynumber: 2.9 Consensus size: 80
58685834 AGCATTTGAA
*
58685844 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTAAGACCCGAAGG
*
58685909 CAATTATGCGAGTTG
66 CAATTATGCGAGATG
*
58685924 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT-ATATGTCCGGGCTATGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTAAGACCCGAAGG
58685988 CAATTATGCGAGATG
66 CAATTATGCGAGATG
* * *
58686003 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGTTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTAAGACCCGAAGG
58686068 CAA
66 CAA
58686071 AGGTGTTTGC
Statistics
Matches: 140, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
79 75 0.54
80 65 0.46
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (80 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTAAGACCCGAAGG
CAATTATGCGAGATG
Found at i:58686105 original size:119 final size:119
Alignment explanation
Indices: 58685844--58686070 Score: 391
Period size: 119 Copynumber: 1.9 Consensus size: 119
58685834 AGCATTTGAA
* * *
58685844 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGG
1 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATAATATATCCGGGCTAAGACCCGAAGG
*
58685909 CAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
66 CAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
58685963 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGG
1 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATAATATATCCGGGCTAAGACCCGAAGG
* *
58686028 CAATTATGCAAGTTGATATGTCCGGGTTAAGACCCGAAGGCAA
66 CAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
58686071 AGGTGTTTGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 101 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (119 bp):
ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATAATATATCCGGGCTAAGACCCGAAGG
CAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:58694507 original size:40 final size:40
Alignment explanation
Indices: 58694452--58694680 Score: 377
Period size: 40 Copynumber: 5.7 Consensus size: 40
58694442 GAGCATTTGA
58694452 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
58694492 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
58694532 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
58694572 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
58694612 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
58694652 GATATGTCCGGGTTAAGACCCGAAGGCAA
1 AATATATCCGGGCTAAGACCCGAAGGCAA
58694681 AGGTGTTTGC
Statistics
Matches: 177, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:58706135 original size:27 final size:27
Alignment explanation
Indices: 58706105--58706282 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58706095 ATATTGAGTC
* * * *
58706105 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
58706132 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58706159 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
58706187 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
58706214 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
58706241 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58706268 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58706283 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:58706244 original size:82 final size:81
Alignment explanation
Indices: 58706126--58706281 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58706116 TGCTATATAA
* *
58706126 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
58706191 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
58706208 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
58706272 CACTTAGTGC
65 CACTTAGTGC
58706282 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:58712987 original size:120 final size:120
Alignment explanation
Indices: 58712771--58713033 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
58712761 TTGAATGCTG
* *
58712771 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
58712835 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
58712891 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
58712954 TCGTGCGAGTTGTTAAATT-CGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
58713010 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
58713034 TGAATGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 71 0.59
121 11 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:58713021 original size:39 final size:40
Alignment explanation
Indices: 58712771--58713033 Score: 264
Period size: 40 Copynumber: 6.6 Consensus size: 40
58712761 TTGAATGCTG
* * * * * *
58712771 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * *
58712811 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* * * *
58712850 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
58712891 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
58712931 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
58712971 TTCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
58713010 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58713034 TGAATGAGGA
Statistics
Matches: 194, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.18
40 148 0.76
41 11 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:58720435 original size:40 final size:39
Alignment explanation
Indices: 58720391--58720602 Score: 246
Period size: 40 Copynumber: 5.3 Consensus size: 39
58720381 GAACTAAGAT
* *
58720391 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGTTACAAA-TCCGGGTTAAGTC
* *
58720431 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTAC-AAATCCGGGTTAAGTC
* *
58720471 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTA-CAAATCCGGGTTAAGTC
* ** *
58720511 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGTT-ACAAATCCGGGTTAAGTC
* * * *
58720551 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTAC-AAATCCGGGTTAAGTC
58720590 CCGAAGGCATTTG
1 CCGAAGGCATTTG
58720603 AACGAGGAGC
Statistics
Matches: 153, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 32 0.21
40 118 0.77
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACAAATCCGGGTTAAGTC
Found at i:58720620 original size:79 final size:80
Alignment explanation
Indices: 58720391--58720635 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
58720381 GAACTAAGAT
* * * * * * * ** *
58720391 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
58720454 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
58720471 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
58720536 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
58720551 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
58720615 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
58720629 CCGAAGG
1 CCGAAGG
58720636 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:58724978 original size:27 final size:27
Alignment explanation
Indices: 58724948--58725125 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58724938 ATATTGAGTC
* * * *
58724948 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
58724975 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58725002 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
58725030 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
58725057 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
58725084 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58725111 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58725126 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:58725087 original size:82 final size:81
Alignment explanation
Indices: 58724969--58725124 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58724959 TGCTATATAA
* *
58724969 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
58725034 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
58725051 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
58725115 CACTTAGTGC
65 CACTTAGTGC
58725125 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:58729456 original size:37 final size:37
Alignment explanation
Indices: 58729406--58729484 Score: 124
Period size: 37 Copynumber: 2.1 Consensus size: 37
58729396 TTATTACGAA
*
58729406 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATTC-CCACACGAAGTCATCGG
*
58729443 GTCTTACCCGGACATAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATTCCCACACGAAGTCATCGG
58729480 GTCTT
1 GTCTT
58729485 TAGAGCTCGG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
37 37 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACATAATTCCCACACGAAGTCATCGG
Found at i:58729681 original size:47 final size:47
Alignment explanation
Indices: 58729602--58730139 Score: 887
Period size: 47 Copynumber: 11.4 Consensus size: 47
58729592 CCCTTCGGGA
* * * * * * * *
58729602 CTTATCACATTTATGCGCTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
58729649 CCTGTCACATATATACTCTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58729696 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58729743 CTTACCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58729790 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58729837 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58729884 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58729931 CTTATCACTTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58729980 CTTATCACATATATACACTTTCACATTCATCAAATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58730027 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58730074 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58730121 CTTATCACATATATACACT
1 CTTATCACATATATACACT
58730140 GTCTTGGCTG
Statistics
Matches: 464, Mismatches: 25, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 417 0.90
49 47 0.10
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58733737 original size:40 final size:40
Alignment explanation
Indices: 58733693--58734111 Score: 748
Period size: 40 Copynumber: 10.5 Consensus size: 40
58733683 TCTTCGAGGT
* * * *
58733693 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
58733733 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
58733773 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
58733813 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
58733853 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
58733893 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
58733933 TTAGCTCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
58733973 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
* *
58734013 TTAGCCCGGATACATCACTAGCACAAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
58734053 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGGC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
58734093 TTAGCCCGGATATATCACT
1 TTAGCCCGGATATATCACT
58734112 CTCAATTCTC
Statistics
Matches: 364, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 364 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
Found at i:58735977 original size:37 final size:37
Alignment explanation
Indices: 58735927--58736006 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
58735917 CTTATTACGA
* *
58735927 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
58735964 AGTCTTACCCGGACAAAATTCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
58736001 GGTCTT
1 AGTCTT
58736007 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:58736203 original size:47 final size:47
Alignment explanation
Indices: 58736125--58736677 Score: 666
Period size: 47 Copynumber: 11.4 Consensus size: 47
58736115 CCCTTCGGGA
* * * * * * * *
58736125 CTTATCACATTTATGCGCTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
58736172 CCTGTCACATATATACTCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58736219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58736266 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58736313 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** * *
58736360 CTTATCACATATATATACACTTTCACATTCATCACATACATTCATCACATCGG-
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT-C-GGC--CA-TTAGGC
* * * * * *
58736413 C-TATTAGGCCT-TAT-CACATATATACACTTTCA-CATTCATCACATCGGCCATTAGGC
1 CTTATCA--CATATATACAC-T-T-T-CACATTCATCA--CAT--C--GGCCA-TTAGGC
58736469 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58736518 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58736565 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58736612 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58736659 CTTATCACATATATACACT
1 CTTATCACATATATACACT
58736678 GTCTTGGCTG
Statistics
Matches: 446, Mismatches: 36, Indels: 48
0.84 0.07 0.09
Matches are distributed among these distances:
47 333 0.75
49 41 0.09
50 6 0.01
51 5 0.01
52 7 0.02
53 6 0.01
54 14 0.03
55 15 0.03
56 6 0.01
57 6 0.01
58 4 0.01
59 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58736287 original size:94 final size:94
Alignment explanation
Indices: 58736125--58736677 Score: 827
Period size: 94 Copynumber: 5.7 Consensus size: 94
58736115 CCCTTCGGGA
* * * * * * * * * * *
58736125 CTTATCACATTTATGCGCTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
58736190 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
58736219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
58736284 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
58736313 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT--
*
58736378 ACTTTCACATTCATCACATACATTCATCACATCGGCTATTAGGC
62 A----CAC-TT--T--C--ACATTCATCACATCGGCCATTAGGC
58736422 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
58736487 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
58736518 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
58736583 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
58736612 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
58736677 T
66 T
58736678 GTCTTGGCTG
Statistics
Matches: 428, Mismatches: 16, Indels: 30
0.90 0.03 0.06
Matches are distributed among these distances:
94 241 0.56
96 84 0.20
98 2 0.00
100 1 0.00
102 5 0.01
103 5 0.01
105 1 0.00
107 2 0.00
109 87 0.20
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:58736402 original size:13 final size:13
Alignment explanation
Indices: 58736384--58736409 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58736374 ATACACTTTC
58736384 ACATTCATCACAT
1 ACATTCATCACAT
58736397 ACATTCATCACAT
1 ACATTCATCACAT
58736410 CGGCTATTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (13 bp):
ACATTCATCACAT
Found at i:58736413 original size:109 final size:109
Alignment explanation
Indices: 58736288--58736505 Score: 427
Period size: 109 Copynumber: 2.0 Consensus size: 109
58736278 ATACACTTTC
58736288 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
58736353 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
66 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
*
58736397 ACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
58736462 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
66 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
58736506 CGGCCATTAG
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 108 1.00
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (109 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
Found at i:58736432 original size:62 final size:60
Alignment explanation
Indices: 58736335--58736456 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 60
58736325 ATACACTTTC
58736335 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
1 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACAT
*
58736397 ACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
58736457 CGGCCATTAG
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
60 27 0.46
62 32 0.54
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (60 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
Found at i:58736579 original size:203 final size:202
Alignment explanation
Indices: 58736194--58736599 Score: 760
Period size: 203 Copynumber: 2.0 Consensus size: 202
58736184 ATACTCTTTC
58736194 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
58736259 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
66 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
58736324 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
131 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATT
58736389 CATCACAT
195 CATCACAT
*
58736397 ACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
58736462 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
66 ATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
58736527 TATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATACACTTTCACAT
129 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACAT
58736591 TCATCACAT
194 TCATCACAT
58736600 CGGCTATTAG
Statistics
Matches: 199, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
203 106 0.53
205 93 0.47
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (202 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTC
ATCACAT
Found at i:58736673 original size:299 final size:297
Alignment explanation
Indices: 58736125--58736673 Score: 963
Period size: 299 Copynumber: 1.8 Consensus size: 297
58736115 CCCTTCGGGA
* * * * * * * *
58736125 CTTATCACATTTATGCGCTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACTC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
58736190 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
58736255 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
58736320 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
196 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
58736385 CATTCATCACATACATTCATCACATCGGCTATTAGGC
261 CATTCATCACATACATTCATCACATCGGCTATTAGGC
* * *
58736422 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
58736487 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
58736552 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
58736617 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
194 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
58736674 CACTGTCTTG
Statistics
Matches: 237, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
297 45 0.19
299 192 0.81
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (297 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
CATTCATCACATACATTCATCACATCGGCTATTAGGC
Found at i:58741293 original size:39 final size:40
Alignment explanation
Indices: 58741246--58741377 Score: 187
Period size: 40 Copynumber: 3.3 Consensus size: 40
58741236 GGACTAGGAT
*
58741246 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTC
* *
58741285 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTC
* * *
58741325 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTC
58741365 CCGAAGGCATTTG
1 CCGAAGGCATTTG
58741378 AACGAGTAGC
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 36 0.44
40 46 0.56
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTC
Found at i:58741391 original size:40 final size:40
Alignment explanation
Indices: 58741194--58741377 Score: 182
Period size: 40 Copynumber: 4.6 Consensus size: 40
58741184 TGAATGATGT
* * * *
58741194 CCGGGCTAAGTCCCGAAGGC-TTTG-GGGTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTATAA
* * * *
58741234 CCGGACTAGGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
58741274 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
58741312 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
58741353 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
58741378 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
39 35 0.29
40 77 0.64
41 7 0.06
42 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:58741399 original size:79 final size:79
Alignment explanation
Indices: 58741246--58741410 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
58741236 GGACTAGGAT
* * **
58741246 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
58741311 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
58741325 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
58741388 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
58741404 CCGAAGG
1 CCGAAGG
58741411 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:58748227 original size:55 final size:54
Alignment explanation
Indices: 58748132--58748281 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
58748122 CTACTTTGTT
* ** * *
58748132 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
58748186 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
58748241 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
58748282 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:58748244 original size:27 final size:27
Alignment explanation
Indices: 58748104--58748281 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
58748094 TAAATTGTAC
58748104 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
58748131 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
58748157 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
58748185 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
58748213 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
58748240 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
58748267 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58748282 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:58748245 original size:82 final size:81
Alignment explanation
Indices: 58748105--58748260 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
58748095 AAATTGTACA
* * * *
58748105 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
58748170 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
58748186 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
58748249 TGTGCGAGTTGA
63 TGTGCGAATTGA
58748261 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:58755431 original size:55 final size:54
Alignment explanation
Indices: 58755336--58755485 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
58755326 CTACTTTGTT
* ** * *
58755336 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
58755390 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
58755445 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
58755486 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:58755448 original size:27 final size:27
Alignment explanation
Indices: 58755308--58755485 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
58755298 TAAATTGTAC
58755308 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
58755335 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
58755361 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
58755389 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
58755417 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
58755444 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
58755471 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58755486 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:58755449 original size:82 final size:81
Alignment explanation
Indices: 58755309--58755464 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
58755299 AAATTGTACA
* * * *
58755309 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
58755374 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
58755390 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
58755453 TGTGCGAGTTGA
63 TGTGCGAATTGA
58755465 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:58758899 original size:79 final size:81
Alignment explanation
Indices: 58758763--58758947 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
58758753 TTGAATGATG
* *
58758763 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
58758827 TGTGCGACATACTA-A
66 TGTGCGACATACTATA
* * * **
58758842 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
**
58758904 ATTGTGCGAGTTACTATA
64 ATTGTGCGACATACTATA
* *
58758922 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58758948 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGACATACTATA
Found at i:58758954 original size:40 final size:40
Alignment explanation
Indices: 58758763--58758947 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
58758753 TTGAATGATG
* * * *
58758763 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* ** *
58758803 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGACATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
58758843 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
58758882 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
58758923 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58758948 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58758969 original size:79 final size:79
Alignment explanation
Indices: 58758816--58758980 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
58758806 GGACTAAGAT
* * **
58758816 CCGAAGGCATTTGTGCGACATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGACATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
58758881 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
** *
58758895 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGACATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
58758958 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
58758974 CCGAAGG
1 CCGAAGG
58758981 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGACATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:58770936 original size:49 final size:49
Alignment explanation
Indices: 58770815--58771664 Score: 1461
Period size: 47 Copynumber: 17.8 Consensus size: 49
58770805 TTAGGATTCT
58770815 ATGTGATGAATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58770863 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58770910 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58770959 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58771008 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
58771057 ATGCGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58771104 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
58771153 ATGTGTTGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58771200 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58771249 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
58771296 ATGAGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58771345 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG-CTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58771393 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
58771440 ATGTGATGAATGTGAAAGTG--TATACATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58771487 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58771536 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * *
58771583 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
58771630 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
58771665 TCCCGAAGGG
Statistics
Matches: 771, Mismatches: 17, Indels: 29
0.94 0.02 0.04
Matches are distributed among these distances:
46 16 0.02
47 356 0.46
48 45 0.06
49 354 0.46
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:58770940 original size:96 final size:96
Alignment explanation
Indices: 58770815--58771664 Score: 1514
Period size: 96 Copynumber: 8.9 Consensus size: 96
58770805 TTAGGATTCT
58770815 ATGTGATGAATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58770879 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
58770910 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58770975 AGTGTATATATATGTGATAAGGCCTAATGGCCG
66 AGTG--TATATATGTGATAAGGCCTAATGGCCG
*
58771008 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58771073 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
*
58771104 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGTTGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58771169 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
58771200 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58771265 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
*
58771296 ATGAGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58771361 AGTGTATATATATGTGATAAGG-CTAATGGCCG
66 AGTG--TATATATGTGATAAGGCCTAATGGCCG
58771393 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
58771456 AGTGTATACATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
58771487 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58771552 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * * *
58771583 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
58771646 AGTGTATAAATGTGATAAG
66 AGTGTATATATGTGATAAG
58771665 TCCCGAAGGG
Statistics
Matches: 731, Mismatches: 16, Indels: 17
0.96 0.02 0.02
Matches are distributed among these distances:
93 15 0.02
94 84 0.11
95 61 0.08
96 431 0.59
97 29 0.04
98 111 0.15
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:58773550 original size:40 final size:40
Alignment explanation
Indices: 58773071--58773536 Score: 611
Period size: 40 Copynumber: 11.8 Consensus size: 40
58773061 GAGAATTGAG
* *
58773071 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
58773111 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
58773150 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
58773190 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
58773230 AGTGATAT-TCCGGGCTAAGT-CCG-AGAGCATTCTTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** * *
58773267 AGTGATGTATCCCTGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
58773307 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
58773347 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
58773387 AGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
58773427 AGTGATGTATCCGGGCTAAGTTCTGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
58773467 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
* *
58773507 GGTGTTATATCCGGGCT-AGTTCCCGAAGAG
1 AGTGATATATCCGGGCTAAG-TCCCGAAGAG
58773537 TAATCATGCT
Statistics
Matches: 385, Mismatches: 34, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
37 20 0.05
38 12 0.03
39 54 0.14
40 297 0.77
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:58777141 original size:49 final size:49
Alignment explanation
Indices: 58777088--58777848 Score: 1323
Period size: 49 Copynumber: 15.8 Consensus size: 49
58777078 TTAGGATTCT
58777088 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58777137 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
58777184 ATGTGATGAATGTGAAATTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58777233 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58777282 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58777331 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
58777380 ATGTGATGAATGTGAAAGTCTATATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAG--TGTATATATATGTGATAAGGCCTAATGGCCG
* *
58777431 ATGTGATGAACGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58777478 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58777527 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58777576 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58777623 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58777671 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
58777720 ATGTGATGAATGTGAAAGTGTAT-T-TATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * *
58777767 ATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
58777814 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
58777849 TCCCGAAGGG
Statistics
Matches: 684, Mismatches: 15, Indels: 28
0.94 0.02 0.04
Matches are distributed among these distances:
45 1 0.00
46 1 0.00
47 227 0.33
48 50 0.07
49 358 0.52
51 47 0.07
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:58778036 original size:37 final size:37
Alignment explanation
Indices: 58777967--58778045 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
58777957 CCGAGCTCTA
* * * *
58777967 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTATGCGTGGAGATTATGTCCGGGT
58778004 AAGACCCGATAACT-TCGCGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTAT-GCGTGGAGATTATGTCCGGGT
58778041 AAGAC
1 AAGAC
58778046 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTATGCGTGGAGATTATGTCCGGGT
Found at i:58780892 original size:39 final size:39
Alignment explanation
Indices: 58780820--58780941 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
58780810 CGAAGTTTGA
*
58780820 ATATGATTCCCGCATATAG-CTACGGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
58780858 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
*
58780897 ATATAATTCCCGCATATAGCCTACAGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
58780936 -TATAAT
1 ATATAAT
58780942 CACCATATAT
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
38 24 0.30
39 57 0.70
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (39 bp):
ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
Found at i:58789207 original size:27 final size:27
Alignment explanation
Indices: 58789176--58789353 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58789166 TAAATTGTAC
58789176 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
58789203 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58789229 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
58789257 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
58789285 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58789312 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
58789339 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58789354 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:58789290 original size:82 final size:81
Alignment explanation
Indices: 58789177--58789332 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58789167 AAATTGTACA
* *
58789177 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
58789241 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
58789258 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
58789323 TGCGAGTTGA
65 TGCGAATTGA
58789333 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:58789344 original size:82 final size:81
Alignment explanation
Indices: 58789173--58789353 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
58789163 GATTAAATTG
* *
58789173 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
58789238 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
58789254 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
58789318 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
58789336 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
58789354 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:58793835 original size:27 final size:27
Alignment explanation
Indices: 58793805--58793983 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
58793795 ATATTGAGCC
* * * *
58793805 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAGTCATAT
* * *
58793832 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCATAT
*
58793859 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCATA-T
** *
58793887 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAGTCATA-T
* *
58793914 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCATAT
*
58793941 CGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTACATAGTCATAT
58793968 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
58793984 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCATAT
Found at i:58793944 original size:82 final size:81
Alignment explanation
Indices: 58793831--58793981 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
58793821 TATAATCATC
* *
58793831 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
58793896 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
58793913 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
58793977 AGTGC
65 AGTGC
58793982 TATACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:58794549 original size:13 final size:13
Alignment explanation
Indices: 58794531--58794555 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58794521 TACTAAATTT
58794531 TCATGGATTCAAG
1 TCATGGATTCAAG
58794544 TCATGGATTCAA
1 TCATGGATTCAA
58794556 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:58801738 original size:27 final size:27
Alignment explanation
Indices: 58801708--58801886 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
58801698 ATATTCAGCC
* * * *
58801708 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAGTCATAT
* * *
58801735 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCATAT
*
58801762 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCATA-T
** *
58801790 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAGTCATA-T
* *
58801817 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCATAT
*
58801844 CGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTACATAGTCATAT
58801871 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
58801887 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCATAT
Found at i:58801847 original size:82 final size:81
Alignment explanation
Indices: 58801734--58801884 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
58801724 TATAATCATC
* *
58801734 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
58801799 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
58801816 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
58801880 AGTGC
65 AGTGC
58801885 TATACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:58808049 original size:27 final size:27
Alignment explanation
Indices: 58808018--58808195 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58808008 TAAATTGTAC
58808018 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
58808045 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58808071 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
58808099 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
58808127 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58808154 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
58808181 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58808196 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:58808132 original size:82 final size:81
Alignment explanation
Indices: 58808019--58808174 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58808009 AAATTGTACA
* *
58808019 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
58808083 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
58808100 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
58808165 TGCGAGTTGA
65 TGCGAATTGA
58808175 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:58808186 original size:82 final size:81
Alignment explanation
Indices: 58808015--58808195 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
58808005 GATTAAATTG
* *
58808015 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
58808080 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
58808096 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
58808160 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
58808178 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
58808196 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:58811381 original size:39 final size:39
Alignment explanation
Indices: 58811333--58811456 Score: 221
Period size: 39 Copynumber: 3.2 Consensus size: 39
58811323 CGAAGTTTGA
*
58811333 ATATGATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
58811372 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
**
58811411 ATATAATTCCCGCATATAGCCTACATACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
58811450 ATATAAT
1 ATATAAT
58811457 CACCATATAT
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (39 bp):
ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
Found at i:58813847 original size:43 final size:44
Alignment explanation
Indices: 58813783--58813931 Score: 143
Period size: 43 Copynumber: 3.5 Consensus size: 44
58813773 GGTTTCAAAC
*
58813783 CTAGCAGGC-GTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCTTTAATGCCGGTGAAATGATATCGGACTTAAAGGT
* * *** *
58813826 CTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATCGTG-CTCCGA-GC
1 CTAGCAGGCTTTAATGCCGGTGAAATGA-TATCG-GACTTAAAGGT
*
58813867 CTAGCAGGC-GTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCTTTAATGCCGGTGAAATGATATCGGACTTAAAGGT
*
58813910 CTAGCAGGC-TTATTGCCGGTGA
1 CTAGCAGGCTTTAATGCCGGTGA
58813932 TGAAATCAAG
Statistics
Matches: 82, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
40 3 0.04
41 17 0.21
42 22 0.27
43 37 0.45
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (44 bp):
CTAGCAGGCTTTAATGCCGGTGAAATGATATCGGACTTAAAGGT
Found at i:58820930 original size:17 final size:18
Alignment explanation
Indices: 58820908--58820943 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
58820898 CACATTGAAG
58820908 TGTTTTCA-TGAAAACCT
1 TGTTTTCATTGAAAACCT
*
58820925 TGTTTTCATTGGAAACCT
1 TGTTTTCATTGAAAACCT
58820943 T
1 T
58820944 TCCTTGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (18 bp):
TGTTTTCATTGAAAACCT
Found at i:58822121 original size:29 final size:29
Alignment explanation
Indices: 58822082--58822147 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
58822072 TATATTCATA
*
58822082 TGGCCCATTAGGCCCAAATCACATTTATG
1 TGGCCCATTAGGCCCAAATCACATTTACG
*
58822111 TGGCCCTTTAGGCCCAAATCACATTTACG
1 TGGCCCATTAGGCCCAAATCACATTTACG
58822140 TGGCCCAT
1 TGGCCCAT
58822148 CATGTCCAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTACG
Found at i:58824245 original size:27 final size:28
Alignment explanation
Indices: 58824209--58824276 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 28
58824199 ATACTTTAGT
*
58824209 TTACCAAATTACTGAAA-TACCCTCGAC
1 TTACAAAATTACTGAAAGTACCCTCGAC
** * *
58824236 TTGTAAAATTAC-CAAAGTACCCTCGAT
1 TTACAAAATTACTGAAAGTACCCTCGAC
58824263 TTACAAAATTACTG
1 TTACAAAATTACTG
58824277 TTTTACCCTC
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
26 3 0.10
27 28 0.90
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (28 bp):
TTACAAAATTACTGAAAGTACCCTCGAC
Found at i:58824283 original size:27 final size:27
Alignment explanation
Indices: 58824253--58824716 Score: 540
Period size: 27 Copynumber: 17.2 Consensus size: 27
58824243 ATTACCAAAG
*
58824253 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
**
58824280 TACCCTCGATTTA-AAGAATTACCGTTT
1 TACCCTCGATTTACAA-AATTACTATTT
*
58824307 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
58824334 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
58824361 TACCTTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
58824388 TACCCAT-GATTTACAGAATTATTATTT
1 TACCC-TCGATTTACAAAATTACTATTT
* *
58824415 TACCCTCGACTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
58824442 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
58824469 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
58824496 TACCCTCGGTTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
** **
58824523 TACCCTTAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
58824550 TACCCTCGATTTAAAAAATTAATATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
58824577 TACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
* **
58824604 TACCCTCGATTTATAAAATTACTGCTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
58824631 TAGCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
58824658 TACCCTCGATTTA-ATGAATTACCGTTT
1 TACCCTCGATTTACA-AAATTACTATTT
* * *
58824685 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
58824712 TACCC
1 TACCC
58824717 CTAGGGTGTT
Statistics
Matches: 375, Mismatches: 54, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.01
27 365 0.97
28 5 0.01
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:58824996 original size:27 final size:26
Alignment explanation
Indices: 58824952--58825003 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58824942 CTCACTGCAA
*
58824952 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
58824979 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
58825004 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:58825255 original size:31 final size:31
Alignment explanation
Indices: 58825220--58825299 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
58825210 TTGCATTCAC
* * *
58825220 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* * *
58825251 ATTCTGATTCTAATTTTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
58825282 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
58825300 ATTCTATCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:58825259 original size:6 final size:6
Alignment explanation
Indices: 58825220--58825350 Score: 81
Period size: 6 Copynumber: 21.3 Consensus size: 6
58825210 TTGCATTCAC
* * * *
58825220 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
58825269 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- ATCACCTA ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
58825319 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
58825351 AATGTTTCTT
Statistics
Matches: 95, Mismatches: 19, Indels: 22
0.70 0.14 0.16
Matches are distributed among these distances:
5 6 0.06
6 78 0.82
7 7 0.07
8 4 0.04
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:58825339 original size:37 final size:37
Alignment explanation
Indices: 58825220--58825342 Score: 141
Period size: 37 Copynumber: 3.5 Consensus size: 37
58825210 TTGCATTCAC
* * * *
58825220 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTTTGATTCTATCACCTAATTCTGATTCTG
*
58825257 ATTCTAATTTTG------TCACCTAATTCTGATTCTG
1 ATTCTGATTTTGATTCTATCACCTAATTCTGATTCTG
*
58825288 ATTCTGATTCTGATTCTATCACCTAATTCTGATTCTG
1 ATTCTGATTTTGATTCTATCACCTAATTCTGATTCTG
*
58825325 ATTCTCATTTTGATTCTA
1 ATTCTGATTTTGATTCTA
58825343 GTTCTGATAA
Statistics
Matches: 72, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
31 26 0.36
37 46 0.64
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.49
Consensus pattern (37 bp):
ATTCTGATTTTGATTCTATCACCTAATTCTGATTCTG
Found at i:58827394 original size:40 final size:40
Alignment explanation
Indices: 58827283--58827467 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 40
58827273 TCGGATGATG
* *
58827283 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * * * * *
58827322 TTCCGGGCTAAG-CCCGAAGACAATTGTACGAGTTATTATT
1 -ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
** * *
58827362 TTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTGTA
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
58827402 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
58827442 ACCGGG-TCAAGTCCCGAAGGCATTTG
1 ACCGGGCT-AAGTCCCGAAGGCATTTG
58827468 AGCAAGTAGT
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 31 0.25
40 92 0.75
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:58827498 original size:119 final size:119
Alignment explanation
Indices: 58827283--58827500 Score: 257
Period size: 119 Copynumber: 1.8 Consensus size: 119
58827273 TCGGATGATG
* *
58827283 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGACAATTG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGACAATTG
* * * *
58827348 TACGAGTTATTATTTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTGTA
66 TACAAGTTATTATTATCCGGCTAAATCCCGAAGGCATTTGTGCGAGTTATTGTA
* * * *
58827402 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGG-TCAAGTCCCGAAGGCAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCT-AAG-CCCGAAGACAA
*
58827465 TTG-AGCAAG-TAGTTA-TATCCGGCTAAATTCCGAAGG
63 TTGTA-CAAGTTA-TTATTATCCGGCTAAATCCCGAAGG
58827501 TACTTGGGTT
Statistics
Matches: 83, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
118 3 0.04
119 62 0.75
120 18 0.22
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (119 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGACAATTG
TACAAGTTATTATTATCCGGCTAAATCCCGAAGGCATTTGTGCGAGTTATTGTA
Found at i:58840369 original size:47 final size:47
Alignment explanation
Indices: 58840293--58840504 Score: 309
Period size: 47 Copynumber: 4.5 Consensus size: 47
58840283 CTTCGGGACT
* * * * * *
58840293 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
58840340 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
58840386 TCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
58840434 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
58840481 TATCACATATATATACATTCACAT
1 TATCACATATATACACTTTCACAT
58840505 CACAATTATC
Statistics
Matches: 152, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
46 3 0.02
47 147 0.97
48 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:58844038 original size:40 final size:40
Alignment explanation
Indices: 58844006--58844313 Score: 501
Period size: 40 Copynumber: 7.7 Consensus size: 40
58843996 CCAGCATGAT
* * * *
58844006 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
58844046 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
58844086 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
58844126 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
58844166 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
58844206 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
58844246 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
58844286 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
58844314 GTCGAGACCT
Statistics
Matches: 252, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 4 0.02
40 248 0.98
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:58844436 original size:38 final size:38
Alignment explanation
Indices: 58844367--58844441 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
58844357 GAATTTTAAT
*
58844367 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
58844405 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
58844442 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:58846663 original size:47 final size:47
Alignment explanation
Indices: 58846578--58846789 Score: 300
Period size: 47 Copynumber: 4.5 Consensus size: 47
58846568 CTTCGGGACT
* * * * * *
58846578 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
58846625 TGTCACATATATACACTTTCACATTCATCGCATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
58846671 TCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
58846719 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
58846766 TATCACATATATATACATTCACAT
1 TATCACATATATACACTTTCACAT
58846790 CACAATTATC
Statistics
Matches: 150, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
46 3 0.02
47 145 0.97
48 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:58854370 original size:40 final size:40
Alignment explanation
Indices: 58854265--58854481 Score: 219
Period size: 40 Copynumber: 5.5 Consensus size: 40
58854255 CGGATGATGA
* * * *
58854265 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-T
* *
58854305 CCGGGCTAAG-CCCGAAGCCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* *
58854344 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTGTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* ** * *
58854384 CCGGGTTAAGTCCCGAAGGCATTTGTATGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* *
58854424 CCGGG-TCAAGTCCCGAAGGCATTTGAGCAAG-TAGTTATAT
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTA-TTATAT
* *
58854464 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
58854482 TACTTGGGTT
Statistics
Matches: 149, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
39 46 0.31
40 103 0.69
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
Found at i:58859572 original size:45 final size:44
Alignment explanation
Indices: 58859506--58859638 Score: 176
Period size: 45 Copynumber: 2.9 Consensus size: 44
58859496 TAGGATTCTG
**
58859506 ATATGTGTTCTTTGTGTAAGACCACGTCTGGGATGTTGGCATCAAT
1 ATATGTG-T-TTTGTGTAAGACCACGTCTGGGACATTGGCATCAAT
**
58859552 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATTGAT
1 ATATGTGTTTT-GTGTAAGACCACGTCTGGGACATTGGCATCAAT
* *
58859597 ATATGTGGTTATGTGTAAGACCATGTCTGGGACATTGGCATC
1 ATATGT-GTTTTGTGTAAGACCACGTCTGGGACATTGGCATC
58859639 GTATTGATCC
Statistics
Matches: 78, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
44 3 0.04
45 64 0.82
46 11 0.14
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (44 bp):
ATATGTGTTTTGTGTAAGACCACGTCTGGGACATTGGCATCAAT
Found at i:58859654 original size:40 final size:43
Alignment explanation
Indices: 58859565--58859720 Score: 147
Period size: 45 Copynumber: 3.7 Consensus size: 43
58859555 TGTGTTTTCG
* * * * * **
58859565 TGTAAGACCACGTCTGGGACATTGGCATTGATATATGTGGTTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCG--ATATGAGATAACA
* *
58859610 TGTAAGACCATGTCTGGGACATTGGCATCG-TAT-TGAT-CCA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGATAACA
* * *
58859650 TGTAAGACCCTGTTTGGGACAGTGGCATCGATATGAGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGATAACA
* *
58859693 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
58859721 TGTTCAATAT
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
40 27 0.29
41 6 0.07
42 6 0.07
43 25 0.27
45 28 0.30
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGATAACA
Found at i:58863458 original size:29 final size:28
Alignment explanation
Indices: 58863422--58863499 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
58863412 TCATGAGATT
58863422 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
**
58863452 -GCACTAAGTGTGCCAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
58863479 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
58863500 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:58863717 original size:174 final size:174
Alignment explanation
Indices: 58863452--58864127 Score: 1289
Period size: 174 Copynumber: 3.9 Consensus size: 174
58863442 AAATTGTACA
**
58863452 GCACTAAGTGTGCCAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
58863517 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
58863582 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
58863626 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
58863691 TCTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
58863756 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
58863800 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
58863865 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
58863930 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
58863974 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
58864039 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
58864104 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
58864128 ACCTTGAGTT
Statistics
Matches: 494, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 494 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:58871184 original size:29 final size:28
Alignment explanation
Indices: 58871148--58871225 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
58871138 TCATGAGATT
58871148 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
58871178 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
58871205 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
58871226 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:58871443 original size:174 final size:174
Alignment explanation
Indices: 58871178--58871853 Score: 1280
Period size: 174 Copynumber: 3.9 Consensus size: 174
58871168 AAATTGTACA
*
58871178 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
58871243 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
58871308 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
58871352 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
58871417 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACGGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
58871482 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
58871526 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
58871591 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTACGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
58871656 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
58871700 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
58871765 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
58871830 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
58871854 TGTAACACCC
Statistics
Matches: 491, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 491 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:58873712 original size:27 final size:27
Alignment explanation
Indices: 58873682--58873859 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58873672 ATATTGAGTC
* * * *
58873682 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
58873709 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58873736 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
58873764 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
58873791 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
58873818 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58873845 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58873860 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:58873821 original size:82 final size:81
Alignment explanation
Indices: 58873703--58873858 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58873693 TGCTATATAA
* *
58873703 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
58873768 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
58873785 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
58873849 CACTTAGTGC
65 CACTTAGTGC
58873859 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:58883691 original size:21 final size:20
Alignment explanation
Indices: 58883646--58883691 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
58883636 TTGTTGGAAT
58883646 GGTT-AATTTAATCTCTTTA
1 GGTTGAATTTAATCTCTTTA
*
58883665 GCTTGAATTTAAT-TCATGTTA
1 GGTTGAATTTAATCTC-T-TTA
58883686 GGTTGA
1 GGTTGA
58883692 TTGCATTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 5 0.23
20 9 0.41
21 8 0.36
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (20 bp):
GGTTGAATTTAATCTCTTTA
Found at i:58889263 original size:91 final size:92
Alignment explanation
Indices: 58889100--58889269 Score: 197
Period size: 91 Copynumber: 1.8 Consensus size: 92
58889090 ACATTATGAG
* * *
58889100 AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCGTTGAGATGAGAGCTAGTGAGACATGTC
1 AGCCAGTGTAAGAACATGTCTAGGACATGGCATCGGCGTTGAGA-GAGAGCAAGTAAGACATGTC
*
58889165 TTAGACAT-GCATCAGCCTCGATATCTA
65 TGAGACATGGCATCAGCCTCGATATCTA
* *
58889192 AGCCAGTGTAAG-ACATGTCTAGGACAT-GCATTGGC-TGTGAGA-AGTGTCAATGTAAGACCAT
1 AGCCAGTGTAAGAACATGTCTAGGACATGGCATCGGCGT-TGAGAGAGAG-CAA-GTAAGA-CAT
*
58889253 GTCTGGGACATGGCATC
62 GTCTGAGACATGGCATC
58889270 GGTACATATA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
88 3 0.05
89 3 0.05
90 17 0.26
91 26 0.39
92 17 0.26
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (92 bp):
AGCCAGTGTAAGAACATGTCTAGGACATGGCATCGGCGTTGAGAGAGAGCAAGTAAGACATGTCT
GAGACATGGCATCAGCCTCGATATCTA
Found at i:58889410 original size:49 final size:50
Alignment explanation
Indices: 58889057--58889416 Score: 173
Period size: 48 Copynumber: 7.6 Consensus size: 50
58889047 ATTTGTGCGC
* * * *
58889057 TAGTGTAAGA-CATGTCTAGGACAT-GCATCGACCAC-AT-TATGAGAGC
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATCTCTGAGAGT
* * * * * ** *
58889103 CAGTGTAAGAACATGTCTGGGACATGGCATCGGCGTTGA--GATGAGAGC
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATCTCTGAGAGT
* * *
58889151 TAGTG--AGA-CATGTCTTA-GACAT-GCATCAGCCTCGATATCT-A-AGC
1 TAGTGTAAGACCATGTC-TAGGACATGGCATCGGCCTCGATCTCTGAGAGT
* *
58889195 CAGTGTAAGA-CATGTCTAGGACAT-GCATTGG-CT-G-----TGAGAAGT
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATCTCTGAG-AGT
* * * * *
58889237 GTCAATGTAAGACCATGTCTGGGACATGGCATCGG--TAC-ATAT-AGAGGTGT
1 -T-AGTGTAAGACCATGTCTAGGACATGGCATCGGCCT-CGATCTCTGA-GAGT
** * * * *
58889287 TAGTGCCAGACCATGTCTGGGACATAGCATCGGCCTCGATCTCTGAGGGC
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATCTCTGAGAGT
* * * *
58889337 TAGTGTAAGACCATGTCTCA-GACATGGCGTCGGCCTCTATTTC-GATAGT
1 TAGTGTAAGACCATGTCT-AGGACATGGCATCGGCCTCGATCTCTGAGAGT
58889386 TAGTGTAAGACCATGTCTAGGACATGGCATC
1 TAGTGTAAGACCATGTCTAGGACATGGCATC
58889417 AACATTAGAC
Statistics
Matches: 242, Mismatches: 43, Indels: 55
0.71 0.13 0.16
Matches are distributed among these distances:
39 1 0.00
40 1 0.00
42 2 0.01
44 26 0.11
45 30 0.12
46 39 0.16
47 13 0.05
48 48 0.20
49 34 0.14
50 45 0.19
51 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (50 bp):
TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATCTCTGAGAGT
Found at i:58890184 original size:30 final size:30
Alignment explanation
Indices: 58890148--58890216 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
58890138 CATACGGATA
58890148 GACACACGGGCGTGTGTCTAGGCCGTGTGT
1 GACACACGGGCGTGTGTCTAGGCCGTGTGT
58890178 GACACACGGGCGTGTGTCTAGGCCGTGTGT
1 GACACACGGGCGTGTGTCTAGGCCGTGTGT
58890208 GACACACGG
1 GACACACGG
58890217 TTAGCCTCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.16, C:0.25, G:0.39, T:0.20
Consensus pattern (30 bp):
GACACACGGGCGTGTGTCTAGGCCGTGTGT
Done.