Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 186 of 295
Found at i:58890658 original size:20 final size:20
Alignment explanation
Indices: 58890619--58890658 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
58890609 GTTATAATGA
58890619 TCACATGGGCGTATTGCCCTT
1 TCACATGGGCG-ATTGCCCTT
58890640 TCACATGGGC-ATGTGCCCT
1 TCACATGGGCGAT-TGCCCT
58890659 GTATCAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 6 0.33
21 10 0.56
ACGTcount: A:0.15, C:0.30, G:0.25, T:0.30
Consensus pattern (20 bp):
TCACATGGGCGATTGCCCTT
Found at i:58897497 original size:47 final size:47
Alignment explanation
Indices: 58897436--58897973 Score: 869
Period size: 47 Copynumber: 11.4 Consensus size: 47
58897426 CAGTCAAGAC
58897436 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
58897483 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
58897530 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58897577 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58897624 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * **
58897673 AGTGTATATGTGTGATAAGGCTTAACAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
58897720 AGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
58897767 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
58897814 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
58897861 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
58897908 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
58897955 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
58897974 TCCCGAAGGG
Statistics
Matches: 460, Mismatches: 29, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 413 0.90
49 47 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:58907862 original size:38 final size:38
Alignment explanation
Indices: 58907810--58907884 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
58907800 TCTAACATTA
58907810 TGTACTTAGTTAAGTTCATGTGTAAATGTAGTAATATT
1 TGTACTTAGTTAAGTTCATGTGTAAATGTAGTAATATT
58907848 TGTACTTACG-TAAGTTCATGTGTAAATGTAGTAATAT
1 TGTACTTA-GTTAAGTTCATGTGTAAATGTAGTAATAT
58907885 AATTTTCATT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 35 0.97
39 1 0.03
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.43
Consensus pattern (38 bp):
TGTACTTAGTTAAGTTCATGTGTAAATGTAGTAATATT
Found at i:58911685 original size:46 final size:48
Alignment explanation
Indices: 58911634--58911903 Score: 220
Period size: 46 Copynumber: 5.7 Consensus size: 48
58911624 GACGAGAGCT
*
58911634 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGTC
* *
58911680 AGTGTAAGA-CATGTTTGGGACAT-GCATTGG-CTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTAAGTC
* * ** *
58911724 AGTGTAAGGCCATGTCTGGGACATGGCATCGGCAGATATAGAGGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC--CTCGAGATGTAAGTC
* * *** *
58911772 AGTGCAAGACCATGTCTGGGACATGGCATCGACAAGGATATGTGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT-A-AGTC
* * * **
58911821 TAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTTGATTTCG-ATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT-GTA-AGTC
58911871 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
58911904 ATTATACCCC
Statistics
Matches: 182, Mismatches: 29, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
44 10 0.05
45 15 0.08
46 47 0.26
48 38 0.21
49 36 0.20
50 35 0.19
51 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGTC
Found at i:58911785 original size:48 final size:48
Alignment explanation
Indices: 58911679--58911904 Score: 191
Period size: 50 Copynumber: 4.7 Consensus size: 48
58911669 AGATGTAAGC
* * * *
58911679 CAGTGTAAGA-CATGTTTGGGACAT-GCATTGGCTACG--A-GATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-AAGATATGAGGTGT
*
58911723 CAGTGTAAGGCCATGTCTGGGACATGGCATCGGC-AGATATAGAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAAGATAT-GAGGTGT
* * * *
58911771 CAGTGCAAGACCATGTCTGGGACATGGCATCGACAAGGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA-GATATGAG-GTGT
* * ** *
58911820 CTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTTGATTTCGA--TAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATC-GGCAAGATAT-GAGGT-GT
58911870 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
58911905 TTATACCCCA
Statistics
Matches: 147, Mismatches: 21, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
44 10 0.07
45 13 0.09
46 8 0.05
48 39 0.27
49 34 0.23
50 40 0.27
51 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAAGATATGAGGTGT
Found at i:58914467 original size:46 final size:45
Alignment explanation
Indices: 58914416--58914584 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 45
58914406 GACGAGAGCT
58914416 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGT--GCC
* * *
58914462 AGTGTAAGACATGTTTGGGACATGCATTGG-CTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGTGCC
* * * * *
58914506 AGTGTAAGGCCATGTCTGGGACATGGCATCGGCAGATA-TAGAGGTGTC
1 AGTGTAA-GACATGTCTGGGACAT-GCATCGGC--CTACGAGATGTGCC
*
58914554 AGTGCAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
58914585 ACAAGGATAT
Statistics
Matches: 105, Mismatches: 11, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
44 9 0.09
45 16 0.15
46 42 0.40
47 1 0.01
48 35 0.33
49 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGTGCC
Found at i:58914621 original size:50 final size:48
Alignment explanation
Indices: 58914504--58914630 Score: 150
Period size: 48 Copynumber: 2.6 Consensus size: 48
58914494 ACGAGATGTG
* * *
58914504 TCAGTGTAAGGCCATGTCTGGGACATGGCATCGGCAGATATAGAGGTG
1 TCAGTGTAAGACCATGTCTGGGACATGGCATCGACAGATATAGAGGTC
* *
58914552 TCAGTGCAAGACCATGTCTGGGACATGGCATCGACAAGGATATGTGAGAG-C
1 TCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-A-GATAT-AGAG-GTC
*
58914603 T-AGTGTAATACCATGTCTGGGACATGGC
1 TCAGTGTAAGACCATGTCTGGGACATGGC
58914631 GTCAGCCTTG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
48 32 0.47
49 1 0.01
50 30 0.44
51 4 0.06
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.23
Consensus pattern (48 bp):
TCAGTGTAAGACCATGTCTGGGACATGGCATCGACAGATATAGAGGTC
Found at i:58915942 original size:20 final size:20
Alignment explanation
Indices: 58915903--58915942 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
58915893 GTTATAATGA
58915903 TCACATGGGCATGTTGCCCTT
1 TCACATGGGCA-GTTGCCCTT
58915924 TCACATGGGC-GTCTGCCCT
1 TCACATGGGCAGT-TGCCCT
58915943 GTTTCAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 6 0.33
21 10 0.56
ACGTcount: A:0.12, C:0.33, G:0.25, T:0.30
Consensus pattern (20 bp):
TCACATGGGCAGTTGCCCTT
Found at i:58937019 original size:40 final size:40
Alignment explanation
Indices: 58936964--58937167 Score: 322
Period size: 40 Copynumber: 5.1 Consensus size: 40
58936954 CGGATGGTAA
* **
58936964 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
58937004 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
58937044 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
58937084 CCGGGCTTAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
58937124 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
58937164 CCGG
1 CCGG
58937168 TTAAATCCCT
Statistics
Matches: 154, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 151 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:58947739 original size:27 final size:26
Alignment explanation
Indices: 58947695--58947746 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58947685 CTCGCTGCAA
*
58947695 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
58947722 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
58947747 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:58947810 original size:70 final size:67
Alignment explanation
Indices: 58947678--58947816 Score: 181
Period size: 70 Copynumber: 2.0 Consensus size: 67
58947668 GGAAGCGTTT
* * *
58947678 TGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATA
1 TGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAATA
58947743 TC
66 TC
* * *
58947745 TGGCAGCCTCGCTGCAATCT-GTGGCTTCGCCACATATATATATTTGTTCTGGTGGCCTAGCCAC
1 TGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC----ATATATCTGTTCTGGTGACCTAGCCAC
58947809 AATATC
62 AATATC
58947815 TG
1 TG
58947817 TATCTGGTGA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
66 12 0.19
67 20 0.32
70 30 0.48
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (67 bp):
TGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAATA
TC
Found at i:58950016 original size:27 final size:27
Alignment explanation
Indices: 58949944--58950031 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
58949934 TGGATAAGTT
* * *
58949944 GTAGAATTACCAAAATACCCCTGTAAG
1 GTAGAAATACCGAAATACCCCTGTAGG
*
58949971 GTAGAAATATCGAAATACCCCTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGG
* * ** *
58949998 GTAGGACTACCGATTTACCCCTGGAGG
1 GTAGAAATACCGAAATACCCCTGTAGG
58950025 GTA-AAAT
1 GTAGAAAT
58950032 GACTATTTTG
Statistics
Matches: 49, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
26 2 0.04
27 47 0.96
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
GTAGAAATACCGAAATACCCCTGTAGG
Found at i:58950394 original size:8 final size:8
Alignment explanation
Indices: 58950371--58950406 Score: 54
Period size: 8 Copynumber: 4.2 Consensus size: 8
58950361 TTTTGGGCTT
58950371 AATGGGCC
1 AATGGGCC
58950379 GAAATGGGCC
1 --AATGGGCC
58950389 AATGGGCC
1 AATGGGCC
58950397 AATGGGCC
1 AATGGGCC
58950405 AA
1 AA
58950407 CAGGCCCGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 18 0.69
10 8 0.31
ACGTcount: A:0.31, C:0.22, G:0.36, T:0.11
Consensus pattern (8 bp):
AATGGGCC
Found at i:58950711 original size:27 final size:26
Alignment explanation
Indices: 58950667--58950718 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58950657 CTCGCTGCAA
*
58950667 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
58950694 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
58950719 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:58952975 original size:27 final size:27
Alignment explanation
Indices: 58952911--58952968 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
58952901 TGGATAAGTT
* * *
58952911 GTAGAATTACCAAAATACCCTTGGAAG
1 GTAGAAATACCAAAATACCCCTGCAAG
*
58952938 GTAGAAATACCAAAATACCCCTGCAGG
1 GTAGAAATACCAAAATACCCCTGCAAG
58952965 GTAG
1 GTAG
58952969 GACTACCGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (27 bp):
GTAGAAATACCAAAATACCCCTGCAAG
Found at i:58956025 original size:14 final size:14
Alignment explanation
Indices: 58956006--58956035 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
58955996 ACCCCTTCAT
*
58956006 TCCCTCATTCATCA
1 TCCCTCATCCATCA
58956020 TCCCTCATCCATCA
1 TCCCTCATCCATCA
58956034 TC
1 TC
58956036 ATTCTCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:58957336 original size:28 final size:27
Alignment explanation
Indices: 58957281--58957343 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
58957271 ATAAACATGC
* **
58957281 CATGAAAGAAAAACCTTTGTGATTAAT
1 CATGAAAGAAAAACCTTTATGACGAAT
*
58957308 CATGAAAGAAAAAGCCTTTATGGCGAAT
1 CATGAAAGAAAAA-CCTTTATGACGAAT
*
58957336 CATCAAAG
1 CATGAAAG
58957344 GATCGTTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 13 0.43
28 17 0.57
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.24
Consensus pattern (27 bp):
CATGAAAGAAAAACCTTTATGACGAAT
Found at i:58957959 original size:16 final size:16
Alignment explanation
Indices: 58957938--58957979 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
58957928 GGGGTATTAT
58957938 TTATATTATATGTTAG
1 TTATATTATATGTTAG
*
58957954 TTATATTATAAGTTAG
1 TTATATTATATGTTAG
*
58957970 -TAAATTATAT
1 TTATATTATAT
58957980 TAAAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (16 bp):
TTATATTATATGTTAG
Found at i:58960627 original size:22 final size:22
Alignment explanation
Indices: 58960600--58960673 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
58960590 TGAATAGAAT
58960600 TGAATCAGGGTATGTCTGAGTG
1 TGAATCAGGGTATGTCTGAGTG
** * ** *
58960622 TGAATCAATAGTGTGAATGGAAT-
1 TGAATC-AGGGTATGTCT-GAGTG
*
58960645 TGAATCAGGCTATGTCTGAGTG
1 TGAATCAGGGTATGTCTGAGTG
58960667 TGAATCA
1 TGAATCA
58960674 ATAGTACAGA
Statistics
Matches: 36, Mismatches: 13, Indels: 6
0.65 0.24 0.11
Matches are distributed among these distances:
21 3 0.08
22 18 0.50
23 12 0.33
24 3 0.08
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.31
Consensus pattern (22 bp):
TGAATCAGGGTATGTCTGAGTG
Found at i:58960652 original size:45 final size:45
Alignment explanation
Indices: 58960588--58960678 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
58960578 AGTATAAGTA
*
58960588 TGTGAATAGAATTGAATCAGGGTATGTCTGAGTGTGAATCAATAG
1 TGTGAATAGAATTGAATCAGGCTATGTCTGAGTGTGAATCAATAG
*
58960633 TGTGAATGGAATTGAATCAGGCTATGTCTGAGTGTGAATCAATAG
1 TGTGAATAGAATTGAATCAGGCTATGTCTGAGTGTGAATCAATAG
58960678 T
1 T
58960679 ACAGAAAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.32
Consensus pattern (45 bp):
TGTGAATAGAATTGAATCAGGCTATGTCTGAGTGTGAATCAATAG
Found at i:58966014 original size:40 final size:40
Alignment explanation
Indices: 58965970--58966273 Score: 395
Period size: 40 Copynumber: 7.7 Consensus size: 40
58965960 GCTCCTCGTT
* * * *
58965970 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
58966010 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
58966050 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
58966090 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
58966130 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
58966170 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
58966209 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
58966250 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
58966274 CAGCATTCAA
Statistics
Matches: 239, Mismatches: 19, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 48 0.20
40 180 0.75
41 9 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:58968157 original size:27 final size:26
Alignment explanation
Indices: 58968127--58968188 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
58968117 ATTTACTAAA
* *
58968127 ATACCCCTAAGTATAAAAATTACCATT
1 ATACCCCTAAGT-GAAAAATGACCATT
* * *
58968154 ATACCCCTAGGTGCAAAGTGACCATT
1 ATACCCCTAAGTGAAAAATGACCATT
58968180 ATACCCCTA
1 ATACCCCTA
58968189 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.26
Consensus pattern (26 bp):
ATACCCCTAAGTGAAAAATGACCATT
Found at i:58968367 original size:27 final size:26
Alignment explanation
Indices: 58968292--58968378 Score: 102
Period size: 27 Copynumber: 3.3 Consensus size: 26
58968282 TGGAGGAAGC
* *
58968292 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGTCAC-AATATCT
* *
58968319 ATTCTGGTGGCTCTTTCACAATATCT
1 GTTCTGGTGGCTCTGTCACAATATCT
* *
58968345 GTATCTGGTGACTCTGTCACAATATTT
1 GT-TCTGGTGGCTCTGTCACAATATCT
58968372 GTTCTGG
1 GTTCTGG
58968379 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 13 0.25
27 38 0.75
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGTCACAATATCT
Found at i:58973982 original size:40 final size:40
Alignment explanation
Indices: 58973927--58974044 Score: 166
Period size: 40 Copynumber: 3.0 Consensus size: 40
58973917 AGTCTTTAAC
*
58973927 CCGGATACCATTCCAGCATGA-AGCCTGCGGGTCTTTATGA
1 CCGGATACAATTCCAGCAT-ATAGCCTGCGGGTCTTTATGA
* * *
58973967 CTGGATACAATTCCAGCATATAGCCTGCGGGTCTTTAAGC
1 CCGGATACAATTCCAGCATATAGCCTGCGGGTCTTTATGA
* *
58974007 CCGGATACACTTCTAGCATATAGCCTGCGGGTCTTTAT
1 CCGGATACAATTCCAGCATATAGCCTGCGGGTCTTTAT
58974045 ACCCTGATAC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 68 0.99
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATACAATTCCAGCATATAGCCTGCGGGTCTTTATGA
Found at i:58974054 original size:40 final size:39
Alignment explanation
Indices: 58973909--58974054 Score: 163
Period size: 40 Copynumber: 3.7 Consensus size: 39
58973899 TTCTAGCGCA
* *
58973909 AGCCTACGAGTCTTTAACCCGGATAC-CATTCCAGCATGA-
1 AGCCTGCGGGTCTTTAACCCGGATACAC-TTCCAGCAT-AT
* *
58973948 AGCCTGCGGGTCTTTATGA-CTGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTA--ACCCGGATACACTTCCAGCATAT
*
58973988 AGCCTGCGGGTCTTTAAGCCCGGATACACTTCTAGCATAT
1 AGCCTGCGGGTCTTTAA-CCCGGATACACTTCCAGCATAT
*
58974028 AGCCTGCGGGTCTTTATACCCTGATAC
1 AGCCTGCGGGTCTTTA-ACCCGGATAC
58974055 CACATCAAAT
Statistics
Matches: 92, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
38 1 0.01
39 15 0.16
40 74 0.80
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (39 bp):
AGCCTGCGGGTCTTTAACCCGGATACACTTCCAGCATAT
Found at i:58981730 original size:40 final size:40
Alignment explanation
Indices: 58981658--58981843 Score: 288
Period size: 40 Copynumber: 4.7 Consensus size: 40
58981648 TTCTAGTGCA
* *
58981658 AGCCTACGGGTCTTTAA-CCCGGATACCATTCCAGCATGA-
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAT-AT
*
58981697 AGCCTGCGGGTCTTTATGCCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
58981737 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
58981777 AGCCTGCGGGTCTTTAAGCCCGGATACACTTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
58981817 AGCCTGCGGATCTTTATA-CCCGGATAC
1 AGCCTGCGGGTCTTTA-AGCCCGGATAC
58981844 CACATCAAAT
Statistics
Matches: 138, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.12
40 121 0.88
41 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
Found at i:58994796 original size:37 final size:37
Alignment explanation
Indices: 58994685--58994798 Score: 185
Period size: 37 Copynumber: 3.1 Consensus size: 37
58994675 CGAATAGTCC
* *
58994685 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTAATCGGGTCTTACCCGGACATAATCT
*
58994722 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTAATCGGGTCTTACCCGGACATAATCT
58994759 CCACACGTAGTAATCGGGTCTTACCCGGA-ATATATCT
1 CCACACGTAGTAATCGGGTCTTACCCGGACATA-ATCT
58994796 CCA
1 CCA
58994799 AGTTTCATGT
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
36 3 0.04
37 70 0.96
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTAATCGGGTCTTACCCGGACATAATCT
Found at i:58994986 original size:48 final size:48
Alignment explanation
Indices: 58994928--58995219 Score: 426
Period size: 48 Copynumber: 6.0 Consensus size: 48
58994918 ATATACACAC
* *
58994928 ATCTCCTACATATTTCACATTAGCCATTCGACTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
*
58994976 ATCTCATACATATTTCACATTAGCCATTCGGA-TTTACCACATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTC-GACTTTACCAC--ATATACAT
** *
58995026 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
* * * *
58995074 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
*
58995122 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
*
58995170 ATCTCATATATATTTCACATTAGCCATTCGGA-TTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTC-GACTTTACCACATATACAT
58995218 AT
1 AT
58995220 ATTTATCTTG
Statistics
Matches: 222, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
48 176 0.79
49 4 0.02
50 42 0.19
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
Found at i:58995036 original size:98 final size:98
Alignment explanation
Indices: 58994928--58995221 Score: 493
Period size: 96 Copynumber: 3.0 Consensus size: 98
58994918 ATATACACAC
* * * *
58994928 ATCTCCTACATATTTCACATTAGCCATTCGACTTTACCAAATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
58994993 CATTAGCCATTCGGATTTACCACATATATATAT
66 CATTAGCCATTCGGATTTACCACATATATATAT
**
58995026 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
* *
58995091 CATTAGCCATTTGGCTTTACCAC--ATATATAT
66 CATTAGCCATTCGGATTTACCACATATATATAT
58995122 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
*
58995187 CATTAGCCATTCGGATTTACCACATATACATAT
66 CATTAGCCATTCGGATTTACCACATATATATAT
58995220 AT
1 AT
58995222 TTATCTTGTA
Statistics
Matches: 181, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
96 92 0.51
98 89 0.49
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (98 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
CATTAGCCATTCGGATTTACCACATATATATAT
Found at i:58997756 original size:49 final size:49
Alignment explanation
Indices: 58997684--58997782 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
58997674 CATACCATCA
*
58997684 TGGCCGGCCACTTCCTCTAAAGTGGGGAATTTGACATGCAAGTCTACAT
1 TGGCCGGCCACTTCCTCTAAAGTGGGGAATTCGACATGCAAGTCTACAT
58997733 TGGCCGGCCACTTCCTCTAAAGTGGGGAATTCGACATGCAAGTCTACAT
1 TGGCCGGCCACTTCCTCTAAAGTGGGGAATTCGACATGCAAGTCTACAT
58997782 T
1 T
58997783 TTTTTCCACC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (49 bp):
TGGCCGGCCACTTCCTCTAAAGTGGGGAATTCGACATGCAAGTCTACAT
Found at i:58998870 original size:29 final size:29
Alignment explanation
Indices: 58998837--58998934 Score: 101
Period size: 29 Copynumber: 3.4 Consensus size: 29
58998827 AAAGAACTCA
58998837 CACACATAGTGCCTCAATTACCAATCTCG
1 CACACATAGTGCCTCAATTACCAATCTCG
* * **
58998866 TACACATAGTG-CTCGATTGAAGAA-CTCG
1 CACACATAGTGCCTCAATT-ACCAATCTCG
* ** *
58998894 CACACATAGTGCCTCAACTACTGATCTGG
1 CACACATAGTGCCTCAATTACCAATCTCG
58998923 CACACATAGTGC
1 CACACATAGTGC
58998935 TCGGTTGAAG
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
28 22 0.40
29 33 0.60
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (29 bp):
CACACATAGTGCCTCAATTACCAATCTCG
Found at i:58998872 original size:57 final size:57
Alignment explanation
Indices: 58998806--58998966 Score: 214
Period size: 57 Copynumber: 2.8 Consensus size: 57
58998796 CTGACTGATT
** * * *
58998806 TCGCACACATAACGCTCGATTAAAGAACTCACACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* **
58998863 TCGTACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * *
58998920 TGGCACACATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
58998967 TAACTCCAGC
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 91 1.00
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:58998901 original size:28 final size:27
Alignment explanation
Indices: 58998806--58998962 Score: 116
Period size: 28 Copynumber: 5.6 Consensus size: 27
58998796 CTGACTGATT
**
58998806 TCGCACACATAACGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATT-AAGAAC
* * **
58998834 TCACACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTG-CTCGATTAAGAA-C
*
58998863 TCGTACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATT-AAGAAC
* * * *
58998891 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTA-AGAAC
* *
58998920 TGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATT-AAGAAC
* *
58998948 TTGCACACACAGTGC
1 TCGCACACATAGTGC
58998963 CTCATAACTC
Statistics
Matches: 99, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
28 55 0.56
29 44 0.44
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (27 bp):
TCGCACACATAGTGCTCGATTAAGAAC
Found at i:58999038 original size:40 final size:40
Alignment explanation
Indices: 58998994--58999448 Score: 786
Period size: 40 Copynumber: 11.4 Consensus size: 40
58998984 CCTTCGAGGT
58998994 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
58999034 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
58999074 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
58999114 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCAGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
58999154 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* *
58999194 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
58999234 TTAGCTCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
58999274 TTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* *
58999314 TTAGCCCGGATATATCACTAGCATGAATGCTCTTCGAAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
58999354 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCAGG-AC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GGAAC
* *
58999394 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
58999434 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
58999449 ATAACTCTCA
Statistics
Matches: 393, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 390 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
Found at i:59000763 original size:37 final size:37
Alignment explanation
Indices: 59000710--59000860 Score: 241
Period size: 37 Copynumber: 4.1 Consensus size: 37
59000700 CGAATAGTCC
* * *
59000710 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
59000747 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
59000784 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
* *
59000821 CCACACGTAGTAATCGGGTCTTACCC-GAAATATATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATA-ATCT
59000858 CCA
1 CCA
59000861 AGTTTCATGT
Statistics
Matches: 108, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
36 5 0.05
37 103 0.95
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:59001048 original size:48 final size:48
Alignment explanation
Indices: 59000990--59001279 Score: 431
Period size: 48 Copynumber: 6.0 Consensus size: 48
59000980 ATATACACAC
* *
59000990 ATCTCCTACATATTTCACATTAGCCATTCGACTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
*
59001038 ATCTCATACATATTTCACATTAGCCATTCGGA-TTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTC-GACTTTACCACATATACAT
* ** *
59001086 ATCTTATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
* * * *
59001134 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
*
59001182 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
*
59001230 ATCTCATATATATTTCACATTAGCCATTCAGA-TTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTC-GACTTTACCACATATACAT
59001278 AT
1 AT
59001280 ATTTATCTTG
Statistics
Matches: 220, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
47 1 0.00
48 216 0.98
49 3 0.01
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
Found at i:59001109 original size:96 final size:96
Alignment explanation
Indices: 59000990--59001279 Score: 481
Period size: 96 Copynumber: 3.0 Consensus size: 96
59000980 ATATACACAC
* * * *
59000990 ATCTCCTACATATTTCACATTAGCCATTCGACTTTACCAAATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
59001055 CATTAGCCATTCGGATTTACCACATATATAT
66 CATTAGCCATTCGGATTTACCACATATATAT
* **
59001086 ATCTTATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
* *
59001151 CATTAGCCATTTGGCTTTACCACATATATAT
66 CATTAGCCATTCGGATTTACCACATATATAT
59001182 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
* *
59001247 CATTAGCCATTCAGATTTACCACATATACAT
66 CATTAGCCATTCGGATTTACCACATATATAT
59001278 AT
1 AT
59001280 ATTTATCTTG
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 178 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (96 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
CATTAGCCATTCGGATTTACCACATATATAT
Found at i:59012728 original size:40 final size:40
Alignment explanation
Indices: 59012673--59012896 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
59012663 TATTCGGATG
*
59012673 ATATCCGGGCTAAGTCCCGAAGGAATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
59012713 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
59012756 ATACCCGGGCTAAGTCCCGGAGGCATTTGTGCCAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
59012796 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
59012836 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
59012876 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
59012897 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 13 0.08
40 111 0.69
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:59012816 original size:83 final size:80
Alignment explanation
Indices: 59012677--59012896 Score: 293
Period size: 83 Copynumber: 2.7 Consensus size: 80
59012667 CGGATGATAT
* * **
59012677 CCGGGCTAAGTCCCGAAGGAATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
59012742 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* *
59012760 CCGGGCTAAGTCCCGGAGGCATTTGTGCCAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
59012825 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* *
59012840 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
59012897 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
83 62 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:59016353 original size:20 final size:19
Alignment explanation
Indices: 59016312--59016354 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
59016302 TTTATAATGC
*
59016312 TATTTTTCATATTAATCTA
1 TATTTTTCATATTAATCCA
* *
59016331 TATTTTTCATGTTATTTCCA
1 TATTTTTCATATTA-ATCCA
59016351 TATT
1 TATT
59016355 GATAATCACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (19 bp):
TATTTTTCATATTAATCCA
Found at i:59031099 original size:27 final size:27
Alignment explanation
Indices: 59031058--59031225 Score: 185
Period size: 27 Copynumber: 6.2 Consensus size: 27
59031048 CCCCAAAATA
*
59031058 GGTAAAATAACCGTAATACCTTTGTAG
1 GGTAAAATAACCGTAATACCCTTGTAG
* * * * *
59031085 GATAAAATGATCGTAATGCCCTTATAG
1 GGTAAAATAACCGTAATACCCTTGTAG
59031112 GGTAAAATAACCGTAATACCCTTGTAG
1 GGTAAAATAACCGTAATACCCTTGTAG
* * *
59031139 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATAACCGTAATACCCTTGTAG
* *
59031166 GGTAAAATAACCATAATAGCCC-TGTAT
1 GGTAAAATAACCGTAATA-CCCTTGTAG
* * * *
59031193 GGTAAAATGACCGCAATACCCATGTAT
1 GGTAAAATAACCGTAATACCCTTGTAG
59031220 GGTAAA
1 GGTAAA
59031226 TTGATGATTA
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
26 3 0.03
27 112 0.95
28 3 0.03
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GGTAAAATAACCGTAATACCCTTGTAG
Found at i:59031117 original size:54 final size:54
Alignment explanation
Indices: 59031058--59031205 Score: 210
Period size: 54 Copynumber: 2.7 Consensus size: 54
59031048 CCCCAAAATA
* * *
59031058 GGTAAAATAACCGTAATACCTTTGTAGGATAAAATGATCGTAATGCCCTTATAG
1 GGTAAAATAACCGTAATACCCTTGTAGGATAAAATGACCGTAATGCCCCTATAG
* *
59031112 GGTAAAATAACCGTAATACCCTTGTAGGGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATAACCGTAATACCCTTGTAGGATAAAATGACCGTAATGCCCCTATAG
*
59031166 GGTAAAATAACCATAATAGCCC-TGTATGG-TAAAATGACCG
1 GGTAAAATAACCGTAATA-CCCTTGTA-GGATAAAATGACCG
59031206 CAATACCCAT
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
54 81 0.94
55 5 0.06
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
GGTAAAATAACCGTAATACCCTTGTAGGATAAAATGACCGTAATGCCCCTATAG
Found at i:59035191 original size:27 final size:27
Alignment explanation
Indices: 59035160--59035304 Score: 182
Period size: 27 Copynumber: 5.4 Consensus size: 27
59035150 CCCTAAAATA
* * *
59035160 GGTAAAATAACTGTAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
59035187 GGTAAAATGACCGTAATACTCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
** * *
59035214 GGTAAAATGATAGTAATACCCTTGTAA
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
59035241 GGTAAAATGACCGTAATGCCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
59035268 GGTAAAATGACCGTAATACCCTTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
59035295 GGTAAAATGA
1 GGTAAAATGA
59035305 TGATTATGCC
Statistics
Matches: 102, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:59035478 original size:27 final size:26
Alignment explanation
Indices: 59035441--59035499 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
59035431 ATAGAGGAAG
*
59035441 TACTGTACTGGTGACTATGTCACAAT
1 TACTGTACTGGTGACTATGCCACAAT
* * *
59035467 TACTGATACTGGTGGCTTTGCCACATT
1 TACTG-TACTGGTGACTATGCCACAAT
59035494 TACTGT
1 TACTGT
59035500 TTCTGGCATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (26 bp):
TACTGTACTGGTGACTATGCCACAAT
Found at i:59035723 original size:33 final size:33
Alignment explanation
Indices: 59035686--59035749 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
59035676 CAGCCCATAT
*
59035686 TGTTACTGTATAGGGCTAAGGCCCAAACTGTAC
1 TGTTACTGAATAGGGCTAAGGCCCAAACTGTAC
* * *
59035719 TGTTATTGAATAGGGCTCAGGCCCAGACTGT
1 TGTTACTGAATAGGGCTAAGGCCCAAACTGT
59035750 TACTACATGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (33 bp):
TGTTACTGAATAGGGCTAAGGCCCAAACTGTAC
Found at i:59038534 original size:21 final size:18
Alignment explanation
Indices: 59038512--59038549 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
59038502 GTAAACTGTA
59038512 AAAATGGTGTTCTAATAGCT
1 AAAA-GGTG-TCTAATAGCT
59038532 -AAAGGTGTCTAATAGCT
1 AAAAGGTGTCTAATAGCT
59038549 A
1 A
59038550 TGGAACCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
17 10 0.59
18 4 0.24
19 3 0.18
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (18 bp):
AAAAGGTGTCTAATAGCT
Found at i:59042256 original size:38 final size:38
Alignment explanation
Indices: 59042213--59042370 Score: 181
Period size: 38 Copynumber: 3.9 Consensus size: 38
59042203 TTTCAAATTA
59042213 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
59042251 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
59042292 GAATCAATATATGTAACTGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* *
59042336 ACATGTTTAACCGTGGTATATCCACTTAGCACCAC
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC
59042371 ATTAATGAAT
Statistics
Matches: 101, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
38 60 0.59
39 1 0.01
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 1 0.01
47 27 0.27
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:59042321 original size:85 final size:85
Alignment explanation
Indices: 59042220--59042426 Score: 344
Period size: 85 Copynumber: 2.4 Consensus size: 85
59042210 TTAACATGTA
*
59042220 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
* *
59042285 CGTTAATGAATCAATATATG
66 CATTAATGAATCAATAAATG
59042305 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
59042370 CATTAATGAATCAATAAATG
66 CATTAATGAATCAATAAATG
* **
59042390 TAA-TCGTGGTATATCCACTTAGCACCAATTTACATGT
1 TAACT-GTGGCATATCCACTTAGCACCACGTTACATGT
59042427 ATCAATATGT
Statistics
Matches: 115, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
84 1 0.01
85 114 0.99
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (85 bp):
TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CATTAATGAATCAATAAATG
Found at i:59042416 original size:47 final size:49
Alignment explanation
Indices: 59042347--59042465 Score: 181
Period size: 48 Copynumber: 2.5 Consensus size: 49
59042337 CATGTTTAAC
59042347 CGTGGTATATCCACTTAGCACCACA-TTA-ATGAATCAATAAATGTAAT
1 CGTGGTATATCCACTTAGCACCACATTTACATGAATCAATAAATGTAAT
* **
59042394 CGTGGTATATCCACTTAGCACCA-ATTTACATGTATCAATATGTGTAAT
1 CGTGGTATATCCACTTAGCACCACATTTACATGAATCAATAAATGTAAT
*
59042442 CATGGTATATCCACTTAGCACCAC
1 CGTGGTATATCCACTTAGCACCAC
59042466 TTACACGTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
46 1 0.02
47 26 0.40
48 38 0.58
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (49 bp):
CGTGGTATATCCACTTAGCACCACATTTACATGAATCAATAAATGTAAT
Found at i:59042470 original size:132 final size:132
Alignment explanation
Indices: 59042262--59042502 Score: 360
Period size: 132 Copynumber: 1.8 Consensus size: 132
59042252 CATGTTTAAC
* *
59042262 CGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACTGTGGCATATCCACTTAG
1 CGTGGTATATCCACTTAGCACCAAGTTAATGAATCAATATATGTAACTATGGCATATCCACTTAG
* * *
59042327 CACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATAAATGTA
66 CACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACATTAATGAATCAATAAATGTA
59042392 AT
131 AT
* * * *
59042394 CGTGGTATATCCACTTAGCACCAATTTACATGTATCAATATGTGTAA-TCATGGTATATCCACTT
1 CGTGGTATATCCACTTAGCACCAAGTTA-ATGAATCAATATATGTAACT-ATGGCATATCCACTT
*
59042458 AGCACCAC-TTACACGTATAACCATGGTATATCCGCTTAGCACCAC
64 AGCACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCAC
59042503 GTTTTTTTTT
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
132 60 0.62
133 37 0.38
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (132 bp):
CGTGGTATATCCACTTAGCACCAAGTTAATGAATCAATATATGTAACTATGGCATATCCACTTAG
CACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACATTAATGAATCAATAAATGTA
AT
Found at i:59055754 original size:28 final size:28
Alignment explanation
Indices: 59055722--59055778 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
59055712 CATGATTGAT
59055722 AACTAATTTTATGTGAATATGATGTTGG
1 AACTAATTTTATGTGAATATGATGTTGG
59055750 AACTAATTTTATGTGAATATGATGTTGG
1 AACTAATTTTATGTGAATATGATGTTGG
59055778 A
1 A
59055779 TTGATGGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.04, G:0.21, T:0.42
Consensus pattern (28 bp):
AACTAATTTTATGTGAATATGATGTTGG
Found at i:59056055 original size:13 final size:13
Alignment explanation
Indices: 59056039--59056063 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59056029 ACGGCATTGG
59056039 ACACGGGCATGTT
1 ACACGGGCATGTT
59056052 ACACGGGCATGT
1 ACACGGGCATGT
59056064 GAAAACTACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (13 bp):
ACACGGGCATGTT
Found at i:59057944 original size:84 final size:84
Alignment explanation
Indices: 59057803--59057958 Score: 226
Period size: 84 Copynumber: 1.9 Consensus size: 84
59057793 ATATTGTACA
* * * *
59057803 ATGCCAATGTCCCAGACATGGTCTTACATGCTATCATATATCGATGCCACTGTCCCAGATAG-GG
1 ATGCCAATGTCCCAGACATGCTCTTACACGCTATCACATATCGATGCCAATGTCCCAGA-AGTGG
59057867 TCTTACACAAATCAAATACG
65 TCTTACACAAATCAAATACG
* *
59057887 ATGCCAATGTCCTAGACATGCTCTTACACG-TAATCACATATCGATGCCAATGTCCCAGACGTGG
1 ATGCCAATGTCCCAGACATGCTCTTACACGCT-ATCACATATCGATGCCAATGTCCCAGAAGTGG
59057951 TCTTACAC
65 TCTTACAC
59057959 GAGAACACAT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
83 2 0.03
84 62 0.97
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (84 bp):
ATGCCAATGTCCCAGACATGCTCTTACACGCTATCACATATCGATGCCAATGTCCCAGAAGTGGT
CTTACACAAATCAAATACG
Found at i:59057958 original size:43 final size:43
Alignment explanation
Indices: 59057803--59057959 Score: 194
Period size: 43 Copynumber: 3.7 Consensus size: 43
59057793 ATATTGTACA
* *
59057803 ATGCCAATGTCCCAGACATGGTCTTACATGCT-ATCATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-TAATCAAATATCG
* * * *
59057846 ATGCCACTGTCCCAGATAGGGTCTTACAC-AAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * *
59057887 ATGCCAATGTCCTAGACATGCTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCG
*
59057930 ATGCCAATGTCCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
59057960 AGAACACATA
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 26 0.27
42 15 0.16
43 54 0.57
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCG
Found at i:59062322 original size:37 final size:37
Alignment explanation
Indices: 59062272--59062350 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
59062262 TTATTACGAA
* *
59062272 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
59062309 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
59062346 GTCTT
1 GTCTT
59062351 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:59062484 original size:25 final size:25
Alignment explanation
Indices: 59062456--59062528 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
59062446 ACTGACACAA
59062456 ATGCCCTTCGGGACTTATCACATTT
1 ATGCCCTTCGGGACTTATCACATTT
* * * *
59062481 ATGCACTT---TACTGA-CACA--A
1 ATGCCCTTCGGGACTTATCACATTT
59062500 ATGCCCTTCGGGACTTATCACATTT
1 ATGCCCTTCGGGACTTATCACATTT
59062525 ATGC
1 ATGC
59062529 ACTTTCACAT
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
19 7 0.21
21 4 0.12
22 8 0.24
23 4 0.12
25 11 0.32
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (25 bp):
ATGCCCTTCGGGACTTATCACATTT
Found at i:59062508 original size:44 final size:44
Alignment explanation
Indices: 59062445--59062533 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
59062435 CCGGATATAG
59062445 TACTGACACAAATGCCCTTCGGGACTTATCACATTTATGCACTT
1 TACTGACACAAATGCCCTTCGGGACTTATCACATTTATGCACTT
59062489 TACTGACACAAATGCCCTTCGGGACTTATCACATTTATGCACTT
1 TACTGACACAAATGCCCTTCGGGACTTATCACATTTATGCACTT
59062533 T
1 T
59062534 CACATCCATC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (44 bp):
TACTGACACAAATGCCCTTCGGGACTTATCACATTTATGCACTT
Found at i:59062591 original size:47 final size:47
Alignment explanation
Indices: 59062513--59063082 Score: 821
Period size: 47 Copynumber: 12.5 Consensus size: 47
59062503 CCCTTCGGGA
* * * * * * *
59062513 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
59062560 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
59062607 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
59062654 CTTATTACATTTATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
59062701 CTTATCACAGATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
59062748 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
59062795 CTTATCACACATATACACTTTCACATCCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
59062842 CTTATCAC--ATATACACTTTCACA-TCATCACATC-GCCATTA-G-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
59062883 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
59062930 CTTATCACA-ATATACACTTTCACATTC--CACATCGG-CATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
59062972 CTTATCACACATATACACTTTCACA-TCAT---ATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
59063014 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
59063061 CTTATCACACATATACACTTTC
1 CTTATCACATATATACACTTTC
59063083 TTGGCTGAAT
Statistics
Matches: 480, Mismatches: 28, Indels: 30
0.89 0.05 0.06
Matches are distributed among these distances:
41 20 0.04
42 36 0.08
43 47 0.10
44 27 0.06
45 22 0.05
46 24 0.05
47 304 0.63
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:59065976 original size:191 final size:191
Alignment explanation
Indices: 59065643--59066035 Score: 597
Period size: 191 Copynumber: 2.1 Consensus size: 191
59065633 AAATGCAACC
* * * * *
59065643 CAAACCATTTAAAGATGTATCACTATAAATAACAAATTCTTTACCCAATTCTGGCTGAACTAGCA
1 CAAACCGTCTAAAGATGCATCACTATAAATAAAAAATTCTTTACCCAATTCTAGCTGAACTAGCA
* *
59065708 CTGGAGCTTCGGTCAAAAGGGCTTTCAACTGATCAAAACTTTTCTGGCACTTTTCTAACCATTCG
66 CTAGAGCTTCGGTCAAAAGGGCTTTCAACTGATCAAAACTTTTCTGGCACTTTTCTAACCATTCA
* * * * ** *
59065773 AGCTTAACATCTTTCTGTAATAGCTTTGTCATTGGGGTTTCAATCATAGAGAAACCTTTCA
131 AACTTAACATCTTTCTATAATAGCTTCGTCATCGGCATTGCAATCATAGAGAAACCTTTCA
* * *
59065834 CAAACCGTCTAAAGATGCATCACTATAGATAAAAAATTCTTTCCCCGATTCTAGCTGAACTAGCA
1 CAAACCGTCTAAAGATGCATCACTATAAATAAAAAATTCTTTACCCAATTCTAGCTGAACTAGCA
* * *
59065899 TTAGAGCTTCGGTGAAAAGGGCTTTCAACTGATCAAAATTTTTCTGGCACTTTTCTAACCATTCA
66 CTAGAGCTTCGGTCAAAAGGGCTTTCAACTGATCAAAACTTTTCTGGCACTTTTCTAACCATTCA
59065964 AACTTAACATCTTTCTATAATAGCTTCGTCATCGGCATTGCAATCATAGAGAAACCTTTCA
131 AACTTAACATCTTTCTATAATAGCTTCGTCATCGGCATTGCAATCATAGAGAAACCTTTCA
*
59066025 CAAACTGTCTA
1 CAAACCGTCTA
59066036 TAGTAACCAG
Statistics
Matches: 181, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
191 181 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (191 bp):
CAAACCGTCTAAAGATGCATCACTATAAATAAAAAATTCTTTACCCAATTCTAGCTGAACTAGCA
CTAGAGCTTCGGTCAAAAGGGCTTTCAACTGATCAAAACTTTTCTGGCACTTTTCTAACCATTCA
AACTTAACATCTTTCTATAATAGCTTCGTCATCGGCATTGCAATCATAGAGAAACCTTTCA
Found at i:59083359 original size:27 final size:26
Alignment explanation
Indices: 59083311--59083362 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
59083301 GCGAGACTGC
*
59083311 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
59083337 CAGATATATGTGGCGACGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
59083363 TTGCAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:59088946 original size:5 final size:5
Alignment explanation
Indices: 59088936--59088963 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
59088926 CCAAAAATAA
59088936 TATTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TAT
59088964 GGTTGGCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:59096166 original size:23 final size:22
Alignment explanation
Indices: 59096116--59096167 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
59096106 CACCAATTAG
*
59096116 GTGAT-TTGTGAATATGAAATT
1 GTGATGTTGTGAATAGGAAATT
*
59096137 G-GTATGTTTTGAATAGGTAAATT
1 GTG-ATGTTGTGAATAGG-AAATT
59096160 GTGATGTT
1 GTGATGTT
59096168 ATAAATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 1 0.04
21 3 0.12
22 9 0.36
23 11 0.44
24 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (22 bp):
GTGATGTTGTGAATAGGAAATT
Found at i:59098448 original size:16 final size:16
Alignment explanation
Indices: 59098427--59098459 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
59098417 GGCTTCAGCT
59098427 AATCATTATTGCACTA
1 AATCATTATTGCACTA
59098443 AATCATTATTGCACTA
1 AATCATTATTGCACTA
59098459 A
1 A
59098460 GTGTGTGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.36
Consensus pattern (16 bp):
AATCATTATTGCACTA
Found at i:59103792 original size:28 final size:28
Alignment explanation
Indices: 59103756--59103815 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
59103746 TCAGTACATA
* *
59103756 CAGTCTGGGCCTTAGCCCTATATAGTAG
1 CAGTCTGGGCCTAAGCCCAATATAGTAG
* * *
59103784 CAGTGTGGGCCTAAGCCCAATGTAGTAT
1 CAGTCTGGGCCTAAGCCCAATATAGTAG
59103812 CAGT
1 CAGT
59103816 AGTGTAATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (28 bp):
CAGTCTGGGCCTAAGCCCAATATAGTAG
Found at i:59104223 original size:54 final size:54
Alignment explanation
Indices: 59104163--59104279 Score: 155
Period size: 54 Copynumber: 2.2 Consensus size: 54
59104153 GGCCATAATC
* *
59104163 GTCATTTTACCATAAAGGGGTATTACAGTCATTTTACCTTACAAGGGCATTACA
1 GTCATTTTACCATAAAGAGGTATTACAGTCATTTTACCCTACAAGGGCATTACA
* * * * * *
59104217 GTCATTTTACCCTATAGAGGTATTACGGTCATTTTACCCTATACGGGCATTAGA
1 GTCATTTTACCATAAAGAGGTATTACAGTCATTTTACCCTACAAGGGCATTACA
59104271 -TCATTTTAC
1 GTCATTTTAC
59104280 TCTACAAGGT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 9 0.16
54 46 0.84
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (54 bp):
GTCATTTTACCATAAAGAGGTATTACAGTCATTTTACCCTACAAGGGCATTACA
Found at i:59104268 original size:27 final size:26
Alignment explanation
Indices: 59104163--59104279 Score: 119
Period size: 27 Copynumber: 4.4 Consensus size: 26
59104153 GGCCATAATC
* * *
59104163 GTCATTTTACCATAAAGGGGTATTACA
1 GTCATTTTACCCTATA-GGGCATTACA
* *
59104190 GTCATTTTACCTTACAAGGGCATTACA
1 GTCATTTTACCCTA-TAGGGCATTACA
* *
59104217 GTCATTTTACCCTATAGAGGTATTACG
1 GTCATTTTACCCTATAG-GGCATTACA
*
59104244 GTCATTTTACCCTATACGGGCATTAGA
1 GTCATTTTACCCTATA-GGGCATTACA
59104271 -TCATTTTAC
1 GTCATTTTAC
59104280 TCTACAAGGT
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.14
27 64 0.82
28 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCCTATAGGGCATTACA
Found at i:59108210 original size:47 final size:47
Alignment explanation
Indices: 59108141--59108296 Score: 276
Period size: 47 Copynumber: 3.3 Consensus size: 47
59108131 TGTATATATA
* * *
59108141 TATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAGAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
59108188 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
59108235 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
59108282 TATATATGTGATAAG
1 TATATATGTGATAAG
59108297 TGTGAAAGCG
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 105 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:59108300 original size:25 final size:25
Alignment explanation
Indices: 59108262--59108321 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
59108252 CTAATGGCCG
59108262 ATGTGATGAA-TGTGAAAGCGTATAT
1 ATGTGAT-AAGTGTGAAAGCGTATAT
59108287 ATGTGATAAGTGTGAAAGCGTATAT
1 ATGTGATAAGTGTGAAAGCGTATAT
59108312 ATGTGATAAG
1 ATGTGATAAG
59108322 GCCTAATGGC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 2 0.06
25 32 0.94
ACGTcount: A:0.37, C:0.03, G:0.28, T:0.32
Consensus pattern (25 bp):
ATGTGATAAGTGTGAAAGCGTATAT
Found at i:59108301 original size:72 final size:72
Alignment explanation
Indices: 59108215--59108368 Score: 274
Period size: 72 Copynumber: 2.1 Consensus size: 72
59108205 CTAATGGCCG
*
59108215 ATGTGATGAA-TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGAT-AAGTGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
59108279 GCGTATAT
65 GCGTATAT
59108287 ATGTGATAAGTGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATAAGTGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
59108352 TGTATAT
66 CGTATAT
59108359 ATGTGATAAG
1 ATGTGATAAG
59108369 GCCTAATGGC
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
71 2 0.03
72 77 0.97
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (72 bp):
ATGTGATAAGTGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
CGTATAT
Found at i:59108314 original size:119 final size:118
Alignment explanation
Indices: 59108170--59108418 Score: 455
Period size: 119 Copynumber: 2.1 Consensus size: 118
59108160 AATGGCCAAC
* *
59108170 GTGATGAATGTGAGAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGAT-AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
59108235 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATAT
65 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATAT
59108289 GTGATAAGTGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATAA-TGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
59108354 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATAT
65 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATAT
59108408 GTGAT-ATGTGA
1 GTGATAATGTGA
59108419 TAAGGCCTAA
Statistics
Matches: 127, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
117 5 0.04
118 3 0.02
119 119 0.94
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (118 bp):
GTGATAATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATAT
Found at i:59108338 original size:47 final size:47
Alignment explanation
Indices: 59108287--59108516 Score: 291
Period size: 47 Copynumber: 4.7 Consensus size: 47
59108277 AAGCGTATAT
*
59108287 ATGTGAT-AAGTGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAA-TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
59108334 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
59108381 ATGTGATGAATGTGAAAGCGTATATATGTGATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAA--G--TGTA--T-ATATGTGATAAGGCCTAATGGCCG
* * * * *
59108435 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
59108482 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
59108517 TCCCGAAGGG
Statistics
Matches: 162, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
47 109 0.67
48 3 0.02
49 1 0.01
50 3 0.02
51 3 0.02
52 1 0.01
53 1 0.01
54 41 0.25
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:59108406 original size:166 final size:169
Alignment explanation
Indices: 59108141--59108465 Score: 548
Period size: 166 Copynumber: 1.9 Consensus size: 169
59108131 TGTATATATA
*
59108141 TATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAGAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
59108206 TAATGGCCGATGTGATGAATGTGAAAGTG-TA-T-ATATGTGATAAGGCCTAATGGCCGATGTGA
66 TAATGGCCGATGTGATGAATGTGAAAGCGATAGTGATATGTGATAAGGCCTAATGGCCGATGTGA
59108268 TGAATGTGAAAGCGTATATATGTGATAAGTGTGAAAGCG
131 TGAATGTGAAAGCGTATATATGTGATAAGTGTGAAAGCG
* *
59108307 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
59108372 TAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGATATGTGATAAGGCCTAATGGCCGAT
66 TAATGGCCGATGTGATGAATGTGAAAGCG---ATA-GTGATATGTGATAAGGCCTAATGGCCGAT
*
59108437 GTGATGAATGTGAAAGTGTATATATGTGA
127 GTGATGAATGTGAAAGCGTATATATGTGA
59108466 CAGGGCCGAG
Statistics
Matches: 147, Mismatches: 5, Indels: 7
0.92 0.03 0.04
Matches are distributed among these distances:
166 90 0.61
170 2 0.01
172 1 0.01
173 54 0.37
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (169 bp):
TATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGCGATAGTGATATGTGATAAGGCCTAATGGCCGATGTGA
TGAATGTGAAAGCGTATATATGTGATAAGTGTGAAAGCG
Found at i:59108420 original size:54 final size:54
Alignment explanation
Indices: 59108357--59108465 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
59108347 GAAAGTGTAT
59108357 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTG
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTG
*
59108411 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTG
59108465 A
1 A
59108466 CAGGGCCGAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (54 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTG
Found at i:59108440 original size:101 final size:101
Alignment explanation
Indices: 59108310--59108514 Score: 329
Period size: 101 Copynumber: 2.0 Consensus size: 101
59108300 GAAAGCGTAT
* *
59108310 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAA
* * *
59108375 TGGCCGATGTGATGAATGTGAAAGCGTATATATGTG
66 TGGCCAACGTGATGAATGTGAAAGCGTATAAATGTG
* *
59108411 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAG
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAA
* *
59108476 TGGCCAACGTGATGGATGTGAAAGTGTATAAATGTG
66 TGGCCAACGTGATGAATGTGAAAGCGTATAAATGTG
59108512 ATA
1 ATA
59108515 AGTCCCGAAG
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 95 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (101 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAA
TGGCCAACGTGATGAATGTGAAAGCGTATAAATGTG
Found at i:59108691 original size:37 final size:37
Alignment explanation
Indices: 59108635--59108712 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
59108625 CCGAGCTCTA
* *
59108635 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
59108672 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
59108709 AAGA
1 AAGA
59108713 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:59111335 original size:46 final size:46
Alignment explanation
Indices: 59111269--59111361 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
59111259 GGTACATGGG
*
59111269 AAAAATATTTGTCATTGATTGAATTTACGTATAACAATAGTTTTCA
1 AAAAATATTTGCCATTGATTGAATTTACGTATAACAATAGTTTTCA
*
59111315 AAAAATATTTGCCGTTGATTGAATTTACGTATAACAATAGTTTTCA
1 AAAAATATTTGCCATTGATTGAATTTACGTATAACAATAGTTTTCA
59111361 A
1 A
59111362 TCAAATATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.40
Consensus pattern (46 bp):
AAAAATATTTGCCATTGATTGAATTTACGTATAACAATAGTTTTCA
Found at i:59119370 original size:42 final size:42
Alignment explanation
Indices: 59119318--59119469 Score: 180
Period size: 42 Copynumber: 3.6 Consensus size: 42
59119308 CTAAGACTAT
* *
59119318 GTGTAAGACCATATCTGGGATATGGCATCTATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATAAGAGACTTC
*
59119360 GTGTAAGACCATATCTGGGATATGGCATCAATAAAAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATAAGAGACTTC
* * * * * * *
59119402 GTGTAAGACCATAGCTAGGCTATTAGCATCGATACGAGA-TCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCAATAAGAGACT-TC
*
59119445 ATGTAAGACCATATCTGGGATATGG
1 GTGTAAGACCATATCTGGGATATGG
59119470 AATTGGTATG
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 61 0.66
43 31 0.34
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCAATAAGAGACTTC
Found at i:59122670 original size:28 final size:28
Alignment explanation
Indices: 59122630--59122760 Score: 219
Period size: 28 Copynumber: 4.7 Consensus size: 28
59122620 ACATTGTACA
*
59122630 TATATAGCACTAAGCGTGCGAGTTTGAT
1 TATATAGCACTAAGTGTGCGAGTTTGAT
59122658 TATATAGCACTAAGTGTGCGAGTTTGAT
1 TATATAGCACTAAGTGTGCGAGTTTGAT
*
59122686 TATATAGCACTAAGTGTGCAAGTTTGAT
1 TATATAGCACTAAGTGTGCGAGTTTGAT
*
59122714 TATGTAGCACTAAGTGTGCGAG-TTGAT
1 TATATAGCACTAAGTGTGCGAGTTTGAT
*
59122741 TATATAGCACTGAGTGTGCG
1 TATATAGCACTAAGTGTGCG
59122761 GACTTAATAT
Statistics
Matches: 97, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 23 0.24
28 74 0.76
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
TATATAGCACTAAGTGTGCGAGTTTGAT
Found at i:59129831 original size:47 final size:47
Alignment explanation
Indices: 59129727--59130066 Score: 527
Period size: 47 Copynumber: 7.1 Consensus size: 47
59129717 TCGGGGTGTT
*
59129727 ACATTCATCACATCGGCCATTGGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTC
* * *
59129776 ACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAATTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
*
59129823 ACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
59129870 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTC
* *
59129919 ACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
*
59129966 ACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTC
* * *
59130015 GCATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
59130062 ACATT
1 ACATT
59130067 ACCAACCTTT
Statistics
Matches: 269, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
47 150 0.56
49 119 0.44
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
Found at i:59129909 original size:96 final size:96
Alignment explanation
Indices: 59129727--59130066 Score: 558
Period size: 96 Copynumber: 3.5 Consensus size: 96
59129717 TCGGGGTGTT
* *
59129727 ACATTCATCACATCGGCCATTGGGCCTTATCACATATATATACACTTTCACATTCATCACATTGG
1 ACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGG
* *
59129792 CCATTCGGCCTTATCAC--ATATATACAATTTC
64 CCATTAGGCCTTATCACATATATATACACTTTC
* *
59129823 ACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
1 ACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
59129888 ATTAGGCCTTATCACATATATATACACTTTC
66 ATTAGGCCTTATCACATATATATACACTTTC
* *
59129919 ACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCATATCGGCC
1 ACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
59129984 ATTAGGCCTTATCACATATATATACACTTTC
66 ATTAGGCCTTATCACATATATATACACTTTC
* *
59130015 GCATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATT
1 ACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATT
59130067 ACCAACCTTT
Statistics
Matches: 232, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
94 45 0.19
96 187 0.81
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (96 bp):
ACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTATCACATATATATACACTTTC
Found at i:59129988 original size:143 final size:144
Alignment explanation
Indices: 59129727--59130066 Score: 587
Period size: 143 Copynumber: 2.4 Consensus size: 144
59129717 TCGGGGTGTT
*
59129727 ACATTCATCACATCGGCCATTGGGCCTTATCACATATATATACACTTTCACATTCATCACATTGG
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGG
*
59129792 CCATTCGGCCTTATCACATATATACAATTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-
66 CCATTCGGCCTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
59129856 ATATATACACTTTC
131 ATATATACACTTTC
59129870 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGG
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGG
* *
59129935 CCATTCGGCCTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACA
66 CCATTCGGCCTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
59130000 TATATATACACTTTC
131 -ATATATACACTTTC
* * *
59130015 GCATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATT
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
59130067 ACCAACCTTT
Statistics
Matches: 188, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
143 144 0.77
145 44 0.23
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (144 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGG
CCATTCGGCCTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
ATATATACACTTTC
Found at i:59130427 original size:40 final size:40
Alignment explanation
Indices: 59130271--59130429 Score: 157
Period size: 40 Copynumber: 4.0 Consensus size: 40
59130261 CGGAATTTAA
** *
59130271 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59130311 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
59130351 CCGAAT-TAGTAACTCGCAC-AATGTCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
59130389 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
59130429 C
1 C
59130430 TAGACATCAT
Statistics
Matches: 97, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
37 3 0.03
38 17 0.18
39 19 0.20
40 53 0.55
41 5 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:59133861 original size:40 final size:40
Alignment explanation
Indices: 59133792--59134081 Score: 410
Period size: 40 Copynumber: 7.3 Consensus size: 40
59133782 AGGCACGAAG
* * * * *
59133792 GCCCGAATACCATCACCAGCATGATTGCTCTTCGGGACCTA
1 GCCCGGATA-CATCACTAGCACGAATGCTCTTCGGGACTTA
* * * * *
59133833 GCCCGAATATAACACCAGCACGAATGCTCTTC-GAACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
*
59133872 GCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
*
59133912 GTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
*
59133952 GCCCGGGTACATCACTAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
*
59133992 GCCCGG-TACATCACTAGCATGAATGCTCTTCGGGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
59134031 GCCCGG-TACATCACTA-CACGAATGCTCTTC-GGACTTA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
59134068 GCCCGGATACATCA
1 GCCCGGATACATCA
59134082 TCGTGAGACT
Statistics
Matches: 229, Mismatches: 18, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
37 13 0.06
38 20 0.09
39 80 0.35
40 107 0.47
41 9 0.04
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
Found at i:59133933 original size:79 final size:80
Alignment explanation
Indices: 59133792--59134081 Score: 410
Period size: 79 Copynumber: 3.7 Consensus size: 80
59133782 AGGCACGAAG
* * * * * * * * *
59133792 GCCCGAATACCATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGAATATAACACCAGCACGAA
1 GCCCGGATA-CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
59133857 TGCTCTTC-GAACTTA
65 TGCTCTTCGGGACTTA
* *
59133872 GCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAAT
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAAT
59133937 GCTCTTCGGGACTTA
66 GCTCTTCGGGACTTA
* *
59133952 GCCCGGGTACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGG-TACATCACTAGCATGAAT
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAAT
59134016 GCTCTTCGGGACTTA
66 GCTCTTCGGGACTTA
59134031 GCCCGG-TACATCACTA-CACGAATGCTCTTC-GGACTTAGCCCGGATACATCA
1 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
59134082 TCGTGAGACT
Statistics
Matches: 194, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
76 13 0.07
77 21 0.11
78 10 0.05
79 93 0.48
80 57 0.29
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (80 bp):
GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAAT
GCTCTTCGGGACTTA
Found at i:59134013 original size:119 final size:118
Alignment explanation
Indices: 59133802--59134081 Score: 422
Period size: 119 Copynumber: 2.4 Consensus size: 118
59133792 GCCCGAATAC
* * * * * * *
59133802 CATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGAATATAACACCAGCACGAATGCTCTTCGA
1 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGA
*
59133867 ACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATA
66 ACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG-TA
* *
59133921 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAATGCTCTTCGG
1 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTC-G
*
59133986 GACTTAGCCCGG-TACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTA
65 AACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTA
59134039 CATCACTA-CACGAATGCTCTTC-GGACTTAGCCCGGATACATCA
1 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
59134082 TCGTGAGACT
Statistics
Matches: 148, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
116 20 0.14
117 14 0.09
118 10 0.07
119 92 0.62
120 12 0.08
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (118 bp):
CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGA
ACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTA
Found at i:59136308 original size:47 final size:45
Alignment explanation
Indices: 59136223--59136833 Score: 419
Period size: 47 Copynumber: 14.6 Consensus size: 45
59136213 CCCTCGGACT
* * * * *
59136223 TATCACATTTATACACTTTCACATCCATAACGTTGGCCATTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATT-GG-CC
*
59136270 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATT-GGCC
59136316 TCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATT-GGCC
* *
59136363 TTTCAC-TATAT-TACTTTCAC-TT--T-A-AT-GGCCATTCGG-C
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATT-GGCC
* * *
59136400 TTTC-CAGATATACACTTTCACATTCATCACAT-GG-CTTTGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTGGCC
*
59136442 TTTC-C-T-TATA-AC-TTC-C--TCATC-C-TCGG-C-TTGG-C
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTGGCC
59136474 TATCACAT-TAATACACTTTCACATTCAT-ACATC-GCCATTGGGCC
1 TATCACATAT-ATACACTTTCACATTCATCACATCGGCCATT-GGCC
* * * *
59136518 TTTCAC-TATTTTCACTTT-AC-TTC-TC-CAT-GGCC-TTCGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTGGCC
*
59136556 TTATCACATATATACACTTT-ACATTCATCACATCGG-TATTGGCC
1 -TATCACATATATACACTTTCACATTCATCACATCGGCCATTGGCC
*
59136600 T-TCAC---T-TAC-CTTT--C-TTCATCCCATCGGCC-TTGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTGGCC
59136635 TATCACTATATATACACTTTC-CATTCATCACATCGGCCATTGGGCC
1 TATCAC-ATATATACACTTTCACATTCATCACATCGGCCATT-GGCC
*
59136681 TTTCACATATATATACACTTTCACATTCATCACATC-GCCATTCGGCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-GGCC
59136728 TTATCACATATATACACTTT--CATTCAT--CATC-GCCATTAGGCC
1 -TATCACATATATACACTTTCACATTCATCACATCGGCCATT-GGCC
* * * *
59136770 T-TACGCAT-TATA-ACTTT-AC-TTCATCAC-TTGG-CA-TCGCT
1 TAT-CACATATATACACTTTCACATTCATCACATCGGCCATTGGCC
59136808 TATCACATATATATCACTTTCACATT
1 TATCACATATATA-CACTTTCACATT
59136834 AACCAACCCT
Statistics
Matches: 467, Mismatches: 37, Indels: 124
0.74 0.06 0.20
Matches are distributed among these distances:
32 4 0.01
33 6 0.01
34 6 0.01
35 27 0.06
36 8 0.02
37 17 0.04
38 34 0.07
39 30 0.06
40 40 0.09
41 28 0.06
42 40 0.09
43 23 0.05
44 43 0.09
45 7 0.01
46 29 0.06
47 107 0.23
48 18 0.04
ACGTcount: A:0.25, C:0.30, G:0.09, T:0.36
Consensus pattern (45 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTGGCC
Found at i:59136418 original size:82 final size:82
Alignment explanation
Indices: 59136319--59136771 Score: 332
Period size: 82 Copynumber: 5.6 Consensus size: 82
59136309 TTAGGCCTCA
59136319 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTTCACTATATTACTTTCACT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTTCACTATATTACTTTCACT
*
59136384 TTAATGGCCATTCGGCTT
66 TTCATGGCC-TTCGGCTT
* * *
59136402 TC-CAGATATACACTTTCACATTCATCACAT-GG-C-TTTGGCCTTTC-CT-TATAAC-TTC-CT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTTCACTATATTACTTTCACT
* * *
59136459 CATCCTCGG-CTT-GGCTA
66 -TTCAT-GGCCTTCGGCTT
* *
59136476 TCACAT-TAATACACTTTCACATTCAT-ACATC-GCCATTGGGCCTTTCACTATTTTCACTTT-A
1 TCACATAT-ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTTCACTATATT-ACTTTCA
*
59136537 CTTCTCCATGGCCTTCGCCTT
64 CTT-T-CATGGCCTTCGGCTT
* *
59136558 ATCACATATATACACTTT-ACATTCATCACATCGG-TATT-GGCC-TTCACT-TACCTTTC-TTC
1 -TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTTCACTATA--TTACTTTC
** *
59136617 A-TCCCATCGGCCTT-GGCCTA
63 ACTTTCAT-GGCCTTCGG-CTT
*
59136637 TCACTATATATACACTTTC-CATTCATCACATCGGCCATTGGGCCTTTCACATATATATACACTT
1 TCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTTCAC-TATAT-T--ACTT
*
59136701 TCACATTCATCACATCGCCATTCGGCCTT
61 TCAC-TT--T--CATGGCC-TTCGG-CTT
59136730 ATCACATATATACACTTT--CATTCAT--CATC-GCCATTAGGCCTT
1 -TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
59136772 ACGCATTATA
Statistics
Matches: 296, Mismatches: 29, Indels: 84
0.72 0.07 0.21
Matches are distributed among these distances:
74 12 0.04
75 25 0.08
76 16 0.05
77 9 0.03
78 12 0.04
79 48 0.16
80 15 0.05
81 19 0.06
82 50 0.17
83 27 0.09
84 4 0.01
85 1 0.00
86 4 0.01
88 1 0.00
89 12 0.04
90 4 0.01
91 3 0.01
92 12 0.04
93 18 0.06
94 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.09, T:0.36
Consensus pattern (82 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTTCACTATATTACTTTCACT
TTCATGGCCTTCGGCTT
Found at i:59136580 original size:157 final size:166
Alignment explanation
Indices: 59136294--59136756 Score: 538
Period size: 157 Copynumber: 2.8 Consensus size: 166
59136284 ACTTTCACAT
*
59136294 TCATCACATCGGCCATTAGGCCTCATCACA-TATATACACTTTCACATTCATCACATCGGCCATT
1 TCATCCCATCGGCC-TT-GGCCT-ATCACATTATATACACTTTCACATTCATCACATCGGCCATT
* * * * *
59136358 AGGCCTTTCACTATATT-ACTTTCACTT-T-AATGGCCATTCGGCTT-TC-CAGATATACACTTT
63 GGGCCTTTCACTATTTTCACTTTCACTTCTCCATGGCCATTCGCCTTATCACATATATACACTTT
59136418 CACATTCATCACAT-GGCT-TTGGCCTTTC-CTTATAAC-TTCC
128 -ACATTCATCACATCGG-TATTGGCC-TTCAC-T-TAACTTTCC
59136458 TCAT-CC-TCGG-CTTGG-CTATCACATTA-ATACACTTTCACATTCAT-ACATC-GCCATTGGG
1 TCATCCCATCGGCCTTGGCCTATCACATTATATACACTTTCACATTCATCACATCGGCCATTGGG
59136516 CCTTTCACTATTTTCACTTT-ACTTCTCCATGGCC-TTCGCCTTATCACATATATACACTTTACA
66 CCTTTCACTATTTTCACTTTCACTTCTCCATGGCCATTCGCCTTATCACATATATACACTTTACA
* *
59136579 TTCATCACATCGGTATTGGCCTTCACTTACCTTTCT
131 TTCATCACATCGGTATTGGCCTTCACTTAACTTTCC
59136615 TCATCCCATCGGCCTTGGCCTATCAC-TATATATACACTTTC-CATTCATCACATCGGCCATTGG
1 TCATCCCATCGGCCTTGGCCTATCACAT-TATATACACTTTCACATTCATCACATCGGCCATTGG
* *
59136678 GCCTTTCACATATATATACACTTTCACATTCATCACATCGCCATTCGGCCTTATCACATATATAC
65 GCCTTTCAC-TAT-T-TTCACTTTCAC-TTC-TC-CATGGCCATTC-GCCTTATCACATATATAC
59136743 ACTTT-CATTCATCA
123 ACTTTACATTCATCA
59136757 TCGCCATTAG
Statistics
Matches: 262, Mismatches: 10, Indels: 47
0.82 0.03 0.15
Matches are distributed among these distances:
155 25 0.10
156 21 0.08
157 57 0.22
158 28 0.11
159 6 0.02
160 8 0.03
161 17 0.06
162 19 0.07
163 18 0.07
164 7 0.03
165 1 0.00
166 7 0.03
167 2 0.01
168 3 0.01
169 2 0.01
170 6 0.02
171 12 0.05
172 23 0.09
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.36
Consensus pattern (166 bp):
TCATCCCATCGGCCTTGGCCTATCACATTATATACACTTTCACATTCATCACATCGGCCATTGGG
CCTTTCACTATTTTCACTTTCACTTCTCCATGGCCATTCGCCTTATCACATATATACACTTTACA
TTCATCACATCGGTATTGGCCTTCACTTAACTTTCC
Found at i:59136660 original size:79 final size:80
Alignment explanation
Indices: 59136293--59136756 Score: 308
Period size: 79 Copynumber: 5.6 Consensus size: 80
59136283 CACTTTCACA
*
59136293 TTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATT
1 TTCATC-CATCGGCC-TT-GGCCT-ATCACATATATACACTTTCACATTCATCACATCGG-TATT
59136358 AGGCCTTTCACTATATTA-CTTTC
61 -GGCCTTTCAC--T-TTACCTTTC
* * ** * *
59136381 -ACTTTAAT-GGCCATTCGG-CTTTC-CAGATATACACTTTCACATTCATCACAT-GGCT-TTGG
1 TTCATCCATCGGCC-TT-GGCCTATCACATATATACACTTTCACATTCATCACATCGG-TATTGG
*
59136440 CCTTTC-CTTATAAC-TTC
63 CCTTTCACTT-TACCTTTC
* **
59136457 CTCATCC-TCGG-CTTGG-CTATCACAT-TAATACACTTTCACATTCAT-ACATCGCCATTGGGC
1 TTCATCCATCGGCCTTGGCCTATCACATAT-ATACACTTTCACATTCATCACATCGGTATT-GGC
*
59136517 CTTTCACTATTTTCACTTTAC
64 CTTTCAC--TTTAC-CTTT-C
*
59136538 TTC-TCCAT-GGCCTTCGCCTTATCACATATATACACTTT-ACATTCATCACATCGGTATTGGCC
1 TTCATCCATCGGCCTTGGCC-TATCACATATATACACTTTCACATTCATCACATCGGTATTGGCC
59136600 -TTCAC-TTACCTTTC
65 TTTCACTTTACCTTTC
*
59136614 TTCATCCCATCGGCCTTGGCCTATCACTATATATACACTTTC-CATTCATCACATCGGCCATTGG
1 TTCAT-CCATCGGCCTTGGCCTATCAC-ATATATACACTTTCACATTCATCACATCGG-TATT-G
59136678 GCCTTTCACATATATATACACTTTCAC
62 GCCTTTCAC---T-T-TAC-CTTT--C
59136705 ATTCATCACATC-GCCATTCGGCCTTATCACATATATACACTTT--CATTCATCA
1 -TTCATC-CATCGGCC-TT-GGCC-TATCACATATATACACTTTCACATTCATCA
59136757 TCGCCATTAG
Statistics
Matches: 308, Mismatches: 25, Indels: 82
0.74 0.06 0.20
Matches are distributed among these distances:
74 11 0.04
75 26 0.08
76 20 0.06
77 11 0.04
78 15 0.05
79 48 0.16
80 12 0.04
81 20 0.06
82 45 0.15
83 28 0.09
84 3 0.01
85 9 0.03
86 2 0.01
87 3 0.01
88 3 0.01
89 4 0.01
91 5 0.02
92 20 0.06
93 17 0.06
94 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.09, T:0.36
Consensus pattern (80 bp):
TTCATCCATCGGCCTTGGCCTATCACATATATACACTTTCACATTCATCACATCGGTATTGGCCT
TTCACTTTACCTTTC
Found at i:59137093 original size:39 final size:40
Alignment explanation
Indices: 59137050--59137138 Score: 116
Period size: 39 Copynumber: 2.3 Consensus size: 40
59137040 GGTACTGTTC
*
59137050 CAAATGCCTTCGGGACAT-AGCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
59137089 CAAATGCCTT-GGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
59137128 C--ATGCCTTCGG
1 CAAATGCCTTCGG
59137139 ATCTTAGTCG
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
37 7 0.16
38 8 0.18
39 28 0.62
40 2 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:59154456 original size:19 final size:18
Alignment explanation
Indices: 59154432--59154468 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
59154422 AGCGAACAAG
59154432 CAAAAACAAAGATAAAAAA
1 CAAAAACAAAGA-AAAAAA
59154451 CAAAAACAAAGAAAAAAA
1 CAAAAACAAAGAAAAAAA
59154469 TACAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.81, C:0.11, G:0.05, T:0.03
Consensus pattern (18 bp):
CAAAAACAAAGAAAAAAA
Found at i:59158638 original size:28 final size:28
Alignment explanation
Indices: 59158570--59158752 Score: 287
Period size: 28 Copynumber: 6.5 Consensus size: 28
59158560 CATGAGATTG
* * * *
59158570 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
59158599 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
59158627 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
59158655 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
59158683 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
59158711 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
59158738 GCACTGAGTGTGCGA
1 GCACTAAGTGTGCGA
59158753 ACTTAATATA
Statistics
Matches: 145, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 25 0.17
28 102 0.70
29 18 0.12
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:59161655 original size:37 final size:37
Alignment explanation
Indices: 59161605--59161683 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
59161595 TTATTACGAA
* * *
59161605 GTCTTACGCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
59161642 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
59161679 GTCTT
1 GTCTT
59161684 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:59161981 original size:96 final size:96
Alignment explanation
Indices: 59161802--59162443 Score: 1099
Period size: 96 Copynumber: 6.7 Consensus size: 96
59161792 CCCTTCGGGA
* * * * * * * *
59161802 CTTATCACAT-T-TATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
59161865 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
59161896 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
59161961 ACTTTCACCTTCATCGCATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
59161992 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
59162057 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
59162088 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
59162153 ACTTTCACCTTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
59162184 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
59162249 ACTTTCACATTCATCACATCGGTCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
59162280 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
59162345 ACTTTCACCTTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
59162376 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
59162441 ACT
66 ACT
59162444 GTCTTGGCTG
Statistics
Matches: 517, Mismatches: 29, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
94 10 0.02
95 1 0.00
96 506 0.98
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:59167849 original size:39 final size:39
Alignment explanation
Indices: 59167793--59168050 Score: 338
Period size: 39 Copynumber: 6.6 Consensus size: 39
59167783 ATAATGGAGA
* *
59167793 ATTATATCTGGGTTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
* * *
59167832 GTTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
* * * * *
59167871 ATTATATCCGGGCTAAGTCCCGAAAGAATTCGTACTAGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
* *
59167910 ATTATATCTGGGCTAAGCCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
* *
59167949 GTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
*
59167988 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTTGTGCTGGT
*
59168027 ATTATATCCAGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
59168051 CATGCTTTGT
Statistics
Matches: 193, Mismatches: 24, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
39 171 0.89
40 22 0.11
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
Found at i:59167999 original size:117 final size:118
Alignment explanation
Indices: 59167793--59168010 Score: 402
Period size: 117 Copynumber: 1.9 Consensus size: 118
59167783 ATAATGGAGA
* *
59167793 ATTATATCTGGGTTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
1 ATTATATCTGGGCTAAGCCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
59167858 AATTCGTGCTGGTATTATATCCGGGCT-AAGTCCCGAAAGAATTCGTACTAGT
66 AATTCGTGCTGGTATTATATCCGGGCTAAAGTCCCGAAAGAATTCGTACTAGT
59167910 ATTATATCTGGGCTAAGCCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
1 ATTATATCTGGGCTAAGCCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
*
59167975 CATTCGTGCTGGTATTATATCCGGGCTAAAGTCCCG
66 AATTCGTGCTGGTATTATATCCGGGCTAAAGTCCCG
59168011 CAGGCTTTGT
Statistics
Matches: 97, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
117 89 0.92
118 8 0.08
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (118 bp):
ATTATATCTGGGCTAAGCCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
AATTCGTGCTGGTATTATATCCGGGCTAAAGTCCCGAAAGAATTCGTACTAGT
Found at i:59187317 original size:40 final size:40
Alignment explanation
Indices: 59187244--59187406 Score: 240
Period size: 40 Copynumber: 4.1 Consensus size: 40
59187234 GATAACCGAA
* *
59187244 CTAAGATCCGAAGGCATTCGTGCGAGTTGTTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
* * * *
59187284 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGG
*
59187324 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
59187364 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
59187403 CTAA
1 CTAA
59187407 ATCCTGAAGA
Statistics
Matches: 109, Mismatches: 12, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
39 8 0.07
40 99 0.91
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
Found at i:59187683 original size:22 final size:22
Alignment explanation
Indices: 59187643--59187684 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
59187633 GAATGTGCAT
*
59187643 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
59187665 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
59187685 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:59193449 original size:44 final size:44
Alignment explanation
Indices: 59193401--59193827 Score: 208
Period size: 44 Copynumber: 9.2 Consensus size: 44
59193391 GAACAAGATA
*
59193401 AAGCTACAAATCCTATACCACTAAAGTTGTAGTGGGTCAGATTG
1 AAGCTACAAATCCTATACCCCTAAAGTTGTAGTGGGTCAGATTG
* *
59193445 AAGCTACAATAATGAATCT-TATCTCCCTAAAGTTGCAGTGGAG-CAAGA-TG
1 AAGCTAC-A-AAT---CCTATA-C-CCCTAAAGTTGTAGTGG-GTC-AGATTG
*
59193495 AAGCTATAAATCCTATACCCCTAAAGTTGTAGTGGGTCAGATTG
1 AAGCTACAAATCCTATACCCCTAAAGTTGTAGTGGGTCAGATTG
** * * * * *
59193539 AAGCTACGATAGTGAATGTTAT-CTCCTTAAAGTTGCAATGGAG-CAAAATG
1 AAGCTAC---A---AATCCTATAC-CCCTAAAGTTGTAGTGG-GTCAGATTG
* * *
59193589 AAGCTACAAATCCTATACCACTAAAGTTCTAGTGGGTCGGATTG
1 AAGCTACAAATCCTATACCCCTAAAGTTGTAGTGGGTCAGATTG
* * * *
59193633 AAGCTACAATAGTGAATCT-TATCTCCCTAAAGTTGCAATGGAGTAAGA-TG
1 AAGCTACAA-A-T---CCTATA-C-CCCTAAAGTTGTAGTGG-GTCAGATTG
* *
59193683 AAGCTACAAATCCTATACCCCTAAATTTGTAGTGGGTCGGATTG
1 AAGCTACAAATCCTATACCCCTAAAGTTGTAGTGGGTCAGATTG
* * *
59193727 AAGTTACGATAGTGAATCTTAT-CTCCCTGAAGTTGTAGTGGAG-CAAGA-TG
1 AAGCTAC---A---AATCCTATAC-CCCTAAAGTTGTAGTGG-GTC-AGATTG
* * * * * * *
59193777 AAACTACAAATCCTATACCCTTGAAGTTGCAGTGGGGCGGATTA
1 AAGCTACAAATCCTATACCCCTAAAGTTGTAGTGGGTCAGATTG
59193821 AAGCTAC
1 AAGCTAC
59193828 CATAGCGAAT
Statistics
Matches: 289, Mismatches: 50, Indels: 88
0.68 0.12 0.21
Matches are distributed among these distances:
43 12 0.04
44 115 0.40
45 10 0.03
46 8 0.03
47 4 0.01
48 8 0.03
49 10 0.03
50 110 0.38
51 12 0.04
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (44 bp):
AAGCTACAAATCCTATACCCCTAAAGTTGTAGTGGGTCAGATTG
Found at i:59193474 original size:94 final size:94
Alignment explanation
Indices: 59193313--59193904 Score: 799
Period size: 94 Copynumber: 6.3 Consensus size: 94
59193303 AGTGAAACCC
* * * * *
59193313 CAAATCCTATACCCCTAAAGTTGCAGTTGGTCGAATTAAAGCTACAATAGCGAATCTTATCTCCC
1 CAAATCCTATACCCCTAAAGTTGTAGTGGGTCGGATTGAAGCTACAATAGTGAATCTTATCTCCC
* * *
59193378 TAAAGTTGCAGGGGAACAAGATAAAGCTA
66 TAAAGTTGCAGTGGAGCAAGATGAAGCTA
* * *
59193407 CAAATCCTATACCACTAAAGTTGTAGTGGGTCAGATTGAAGCTACAATAATGAATCTTATCTCCC
1 CAAATCCTATACCCCTAAAGTTGTAGTGGGTCGGATTGAAGCTACAATAGTGAATCTTATCTCCC
59193472 TAAAGTTGCAGTGGAGCAAGATGAAGCTA
66 TAAAGTTGCAGTGGAGCAAGATGAAGCTA
* * * * *
59193501 TAAATCCTATACCCCTAAAGTTGTAGTGGGTCAGATTGAAGCTACGATAGTGAATGTTATCTCCT
1 CAAATCCTATACCCCTAAAGTTGTAGTGGGTCGGATTGAAGCTACAATAGTGAATCTTATCTCCC
* *
59193566 TAAAGTTGCAATGGAGCAAAATGAAGCTA
66 TAAAGTTGCAGTGGAGCAAGATGAAGCTA
* *
59193595 CAAATCCTATACCACTAAAGTTCTAGTGGGTCGGATTGAAGCTACAATAGTGAATCTTATCTCCC
1 CAAATCCTATACCCCTAAAGTTGTAGTGGGTCGGATTGAAGCTACAATAGTGAATCTTATCTCCC
* *
59193660 TAAAGTTGCAATGGAGTAAGATGAAGCTA
66 TAAAGTTGCAGTGGAGCAAGATGAAGCTA
* * *
59193689 CAAATCCTATACCCCTAAATTTGTAGTGGGTCGGATTGAAGTTACGATAGTGAATCTTATCTCCC
1 CAAATCCTATACCCCTAAAGTTGTAGTGGGTCGGATTGAAGCTACAATAGTGAATCTTATCTCCC
* * *
59193754 TGAAGTTGTAGTGGAGCAAGATGAAACTA
66 TAAAGTTGCAGTGGAGCAAGATGAAGCTA
* * * * * * * *
59193783 CAAATCCTATACCCTTGAAGTTGCAGTGGGGCGGATTAAAGCTACCATAGCGAATTTTATCTCCC
1 CAAATCCTATACCCCTAAAGTTGTAGTGGGTCGGATTGAAGCTACAATAGTGAATCTTATCTCCC
* *
59193848 TGAAGTTGCAGTGGAGCAAGATGAGGCTA
66 TAAAGTTGCAGTGGAGCAAGATGAAGCTA
* * * *
59193877 CAAA-CCTATATCCTTAAAATTGCAGTGG
1 CAAATCCTATACCCCTAAAGTTGTAGTGG
59193905 AATGGATTGA
Statistics
Matches: 444, Mismatches: 54, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
93 21 0.05
94 423 0.95
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (94 bp):
CAAATCCTATACCCCTAAAGTTGTAGTGGGTCGGATTGAAGCTACAATAGTGAATCTTATCTCCC
TAAAGTTGCAGTGGAGCAAGATGAAGCTA
Found at i:59193687 original size:50 final size:48
Alignment explanation
Indices: 59193351--59193879 Score: 220
Period size: 50 Copynumber: 11.2 Consensus size: 48
59193341 GGTCGAATTA
* ** *
59193351 AAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCAGGGGAACAAGATA
1 AAGCTACAATA--GAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATG
* * * *
59193401 AAGCTAC---A-AATCCTATAC-CACTAAAGTTGTAGTGG-GTCAGATTG
1 AAGCTACAATAGAATCTTAT-CTCCCTAAAGTTGCAGTGGAGTAAGA-TG
*
59193445 AAGCTACAATAATGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATG
1 AAGCTACAAT-A-GAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATG
* * *
59193495 AAGCT---ATA-AATCCTATAC-CCCTAAAGTTGTAGTGG-GTCAGATTG
1 AAGCTACAATAGAATCTTAT-CTCCCTAAAGTTGCAGTGGAGTAAGA-TG
* * * * * *
59193539 AAGCTACGATAGTGAATGTTATCTCCTTAAAGTTGCAATGGAGCAAAATG
1 AAGCTACAATA--GAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATG
* * **
59193589 AAGCTAC---A-AATCCTATAC-CACTAAAGTT-CTAGTGG-GTCGGATTG
1 AAGCTACAATAGAATCTTAT-CTCCCTAAAGTTGC-AGTGGAGTAAGA-TG
*
59193633 AAGCTACAATAGTGAATCTTATCTCCCTAAAGTTGCAATGGAGTAAGATG
1 AAGCTACAATA--GAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATG
* * * **
59193683 AAGCTAC---A-AATCCTATAC-CCCTAAATTTGTAGTGG-GTCGGATTG
1 AAGCTACAATAGAATCTTAT-CTCCCTAAAGTTGCAGTGGAGTAAGA-TG
* * * * *
59193727 AAGTTACGATAGTGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATG
1 AAGCTACAATA--GAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATG
* * * * *** *
59193777 AAACTAC---A-AATCCTATAC-CCTTGAAGTTGCAGTGG-GGCGGATTA
1 AAGCTACAATAGAATCTTAT-CTCCCTAAAGTTGCAGTGGAGTAAGA-TG
* * * *
59193821 AAGCTACCATAGCGAATTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATG
1 AAGCTACAATA--GAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATG
*
59193871 AGGCTACAA
1 AAGCTACAA
59193880 ACCTATATCC
Statistics
Matches: 356, Mismatches: 71, Indels: 104
0.67 0.13 0.20
Matches are distributed among these distances:
43 17 0.05
44 144 0.40
45 5 0.01
46 1 0.00
47 12 0.03
48 1 0.00
49 5 0.01
50 153 0.43
51 18 0.05
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (48 bp):
AAGCTACAATAGAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAGATG
Found at i:59195806 original size:54 final size:54
Alignment explanation
Indices: 59195724--59195833 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
59195714 TGTTTTACGT
*
59195724 TTAACATTTTGTCATTGCTAATATTACACAATCATGATCATAGCATTATCATGC
1 TTAACATTTTGTCATTGCTAATACTACACAATCATGATCATAGCATTATCATGC
59195778 TTAACATTTTGTCATTGCTAATACTACACAATCATGATCATAGCATTATCATGC
1 TTAACATTTTGTCATTGCTAATACTACACAATCATGATCATAGCATTATCATGC
59195832 TT
1 TT
59195834 TCTCTGATTA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (54 bp):
TTAACATTTTGTCATTGCTAATACTACACAATCATGATCATAGCATTATCATGC
Found at i:59196344 original size:17 final size:17
Alignment explanation
Indices: 59196324--59196357 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
59196314 AACCTCCTCA
59196324 CTAAAAATTCAATTTAG
1 CTAAAAATTCAATTTAG
59196341 CTAAAAATTCAATTTAG
1 CTAAAAATTCAATTTAG
59196358 ATAGAGACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (17 bp):
CTAAAAATTCAATTTAG
Found at i:59200600 original size:274 final size:273
Alignment explanation
Indices: 59200099--59200603 Score: 709
Period size: 274 Copynumber: 1.8 Consensus size: 273
59200089 ATGTTGCATC
* * *
59200099 TAGAGCTTGTATTTTGGTAGTGTTGCAAACAAATTGGTGACATTTTAGTAGGGACAGCTCAGGGT
1 TAGAGCATGAATTTTGGTAGTGCTGCAAACAAATTGGTGACATTTTAGTAGGGACA-CTCAGGGT
* **
59200164 ACAAGGTTGTATGACCTTCGATTTAGCTGCTGGATCATCTTTTTAATCTGCCTTTAAGAATTTTG
65 ACAAAGTTGTATGACCTTCGATTTAGCTGCTGGATCATCTTTTTAATCCACCTTTAAGAATTTTG
*
59200229 AGCACGGGTTTGCAGGAATTAGTTTGTGCATTAAAGAGATGAGATGGCTAATATTAGTATTTAGC
130 AGCACGGGTTTGCAGGAATTAGTTTGTACATTAAAGAGATGAGATGGCTAATATTAGTATTTAGC
* * * *
59200294 ATCAAATGGTACTATCAAAGGTTATTATTGATGAAATCATTCACTTCCAGACATCTGAGATAACA
195 ATCAAAGGGTACAAACAAAGGTTATCATTGATGAAATCATTCACTTCCAGACATCTGAGATAACA
59200359 TATCATGTAGTATT
260 TATCATGTAGTATT
* *
59200373 TAGAGCATGAATTTTGGTAGTGCTGCAAACAAATTGGTGAC-TTTTATTAGGGAC-TTCA-GGTA
1 TAGAGCATGAATTTTGGTAGTGCTGCAAACAAATTGGTGACATTTTAGTAGGGACACTCAGGGTA
*
59200435 CAAAAGTTGTATGACCTTTGATTTAGCTGCT-GACTCATC-TTTTAATTCCACCTTTAAGAA-TT
66 C-AAAGTTGTATGACCTTCGATTTAGCTGCTGGA-TCATCTTTTTAA-TCCACCTTTAAGAATTT
* * * * *
59200497 T-AGCATGGCTAGTTTTGCAGGCATTATTTTGTACCTTAAAGAGATGAGATGGCTAATATTTTGT
128 TGAGCACGG---G-TTTGCAGGAATTAGTTTGTACATTAAAGAGATGAGATGGCTAATA-TTAGT
59200561 ATTTAGCATCAAAGGGTACAAACAAAGGTTATCATTGATGAAA
188 ATTTAGCATCAAAGGGTACAAACAAAGGTTATCATTGATGAAA
59200604 CCTTACATCT
Statistics
Matches: 204, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
269 6 0.03
270 16 0.08
271 47 0.23
272 1 0.00
273 53 0.26
274 81 0.40
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.35
Consensus pattern (273 bp):
TAGAGCATGAATTTTGGTAGTGCTGCAAACAAATTGGTGACATTTTAGTAGGGACACTCAGGGTA
CAAAGTTGTATGACCTTCGATTTAGCTGCTGGATCATCTTTTTAATCCACCTTTAAGAATTTTGA
GCACGGGTTTGCAGGAATTAGTTTGTACATTAAAGAGATGAGATGGCTAATATTAGTATTTAGCA
TCAAAGGGTACAAACAAAGGTTATCATTGATGAAATCATTCACTTCCAGACATCTGAGATAACAT
ATCATGTAGTATT
Found at i:59203000 original size:21 final size:21
Alignment explanation
Indices: 59202976--59203018 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
59202966 TTCCTGTCAA
59202976 GGTTTGTTCATTTGAGATTGT
1 GGTTTGTTCATTTGAGATTGT
59202997 GGTTTGTTCATTTGAGATTGT
1 GGTTTGTTCATTTGAGATTGT
59203018 G
1 G
59203019 AAGTTACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.05, G:0.30, T:0.51
Consensus pattern (21 bp):
GGTTTGTTCATTTGAGATTGT
Found at i:59204750 original size:79 final size:79
Alignment explanation
Indices: 59204659--59204816 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
59204649 TCTGAAGTGG
59204659 CTTTGTCCTCCATTATTTATTTATTTACTTTTTATACATGTTAACTAATATATTTGAACCTACAT
1 CTTTGTCCTCCATTATTTATTTATTTACTTTTTATACATGTTAACTAATATATTTGAACCTACAT
59204724 TTCAGTATCGCACA
66 TTCAGTATCGCACA
59204738 CTTTGTCCTCCATTATTTATTTATTTACTTTTTATACATGTTAACTAATATATTTGAACCTACAT
1 CTTTGTCCTCCATTATTTATTTATTTACTTTTTATACATGTTAACTAATATATTTGAACCTACAT
59204803 TTCAGTATCGCACA
66 TTCAGTATCGCACA
59204817 GACTTTCCAG
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (79 bp):
CTTTGTCCTCCATTATTTATTTATTTACTTTTTATACATGTTAACTAATATATTTGAACCTACAT
TTCAGTATCGCACA
Found at i:59205651 original size:208 final size:206
Alignment explanation
Indices: 59205293--59205710 Score: 818
Period size: 208 Copynumber: 2.0 Consensus size: 206
59205283 ATTTAAGTTT
59205293 CTAATTAATTACAAAGTTACAAGGTCAGTTTTATCTTAATCTTGTTCAATTAAAATGTAGGTCTC
1 CTAATTAATTACAAAGTTACAAGGTCAGTTTTATCTTAATCTTGTTCAATTAAAATGTAGGTCTC
59205358 ATTTTCTTTGTTTCTTTTTTCACCATTTGCAAATACGGATAAAACTGAGGGAGGCATATGGTCAC
66 ATTTTCTTTGTTTCTTTTTTCACCATTTGCAAATACGGATAAAACTGAGGGAGGCATATGGTCAC
59205423 CACACCAATGCGTGCAGCTCCTGCACATGACTTGCTTTGATTTTTTTTTTTTTTTGGTGTCAAAA
131 CACACCAATGCGTGCAGCTCCTGCACATGACTTGCTTTGA--TTTTTTTTTTTTTGGTGTCAAAA
59205488 TATGGAAACATCC
194 TATGGAAACATCC
59205501 CTAATTAATTACAAAGTTACAAGGTCAGTTTTATCTTAATCTTGTTCAATTAAAATGTAGGTCTC
1 CTAATTAATTACAAAGTTACAAGGTCAGTTTTATCTTAATCTTGTTCAATTAAAATGTAGGTCTC
59205566 ATTTTCTTTGTTTCTTTTTTCACCATTTGCAAATACGGATAAAACTGAGGGAGGCATATGGTCAC
66 ATTTTCTTTGTTTCTTTTTTCACCATTTGCAAATACGGATAAAACTGAGGGAGGCATATGGTCAC
59205631 CACACCAATGCGTGCAGCTCCTGCACATGACTTGCTTTGATTTTTTTTTTTTTGGTGTCAAAATA
131 CACACCAATGCGTGCAGCTCCTGCACATGACTTGCTTTGATTTTTTTTTTTTTGGTGTCAAAATA
59205696 TGGAAACATCC
196 TGGAAACATCC
59205707 CTAA
1 CTAA
59205711 AATAAAACAC
Statistics
Matches: 210, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
206 40 0.19
208 170 0.81
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (206 bp):
CTAATTAATTACAAAGTTACAAGGTCAGTTTTATCTTAATCTTGTTCAATTAAAATGTAGGTCTC
ATTTTCTTTGTTTCTTTTTTCACCATTTGCAAATACGGATAAAACTGAGGGAGGCATATGGTCAC
CACACCAATGCGTGCAGCTCCTGCACATGACTTGCTTTGATTTTTTTTTTTTTGGTGTCAAAATA
TGGAAACATCC
Found at i:59208726 original size:19 final size:20
Alignment explanation
Indices: 59208698--59208745 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
59208688 ACTTAATTTG
59208698 TTTT-AGAAA-TCTTTTATA
1 TTTTAAGAAATTCTTTTATA
* *
59208716 TTTTAAGAAATTTTTTTTATG
1 TTTTAAGAAA-TTCTTTTATA
59208737 TTTTAAGAA
1 TTTTAAGAA
59208746 TTTATTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.16
19 5 0.20
21 16 0.64
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.56
Consensus pattern (20 bp):
TTTTAAGAAATTCTTTTATA
Found at i:59208747 original size:20 final size:21
Alignment explanation
Indices: 59208709--59208761 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
59208699 TTTAGAAATC
59208709 TTTTATATTTTAAGAAATTT-T
1 TTTTAT-TTTTAAGAAATTTAT
59208730 TTTTATGTTTTAAG-AATTTAT
1 TTTTAT-TTTTAAGAAATTTAT
59208751 TTATTATTTTT
1 TT-TTATTTTT
59208762 GAAATAACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 5 0.17
21 20 0.69
22 4 0.14
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (21 bp):
TTTTATTTTTAAGAAATTTAT
Found at i:59209198 original size:56 final size:57
Alignment explanation
Indices: 59209137--59209324 Score: 186
Period size: 56 Copynumber: 3.3 Consensus size: 57
59209127 ATGTTTTAAG
* *
59209137 TAACACTTTCAAGTTTTAAGTAATTCTTACATGTATTACGAATTACTTACTTTCTT-
1 TAACACTTTCAAGTTTTAAGTAATTCTTTCATGTATTACGAATTACTTAATTTCTTA
* * * *
59209193 TAACACTTTCATA-TTTGAAGTAACTCTTTCATGTATTATGGATTA-TTAATTTCTTA
1 TAACACTTTCA-AGTTTTAAGTAATTCTTTCATGTATTACGAATTACTTAATTTCTTA
* * * * * * * *
59209249 AAACTCTTTCATGTTTTAAGTAATACTTTCATATTTTACGAATTACTTTATTTATTA
1 TAACACTTTCAAGTTTTAAGTAATTCTTTCATGTATTACGAATTACTTAATTTCTTA
* *
59209306 GAATCA-TTTCACGTTTTAA
1 TAA-CACTTTCAAGTTTTAA
59209325 TTGTCTTTGT
Statistics
Matches: 106, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
55 9 0.08
56 72 0.68
57 24 0.23
58 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (57 bp):
TAACACTTTCAAGTTTTAAGTAATTCTTTCATGTATTACGAATTACTTAATTTCTTA
Found at i:59209543 original size:15 final size:15
Alignment explanation
Indices: 59209523--59209552 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
59209513 ATTTTTCCAA
59209523 TTCACTAATTGATAC
1 TTCACTAATTGATAC
*
59209538 TTCACTAGTTGATAC
1 TTCACTAATTGATAC
59209553 CTTTCAAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (15 bp):
TTCACTAATTGATAC
Found at i:59215572 original size:45 final size:49
Alignment explanation
Indices: 59215456--59215721 Score: 170
Period size: 46 Copynumber: 5.7 Consensus size: 49
59215446 TGGGTAAAGT
* *
59215456 GCCGATGCCATGTCCCAGATAT-AGTCTTACACTGGCTATCATCTTCGAG
1 GCCGATGCCATGTCCCAGACATGA-TCTTACACTGACTATCATCTTCGAG
*
59215505 GCTGATGCCATGTCCCAGACATGATCTTACACTGAC-A-CATC-TCGTA-
1 GCCGATGCCATGTCCCAGACATGATCTTACACTGACTATCATCTTCG-AG
* * * * *
59215551 GCCGATG-CATGTCCTAGACATG-TCTTATACTGGCT-TACGTCTT-AAG
1 GCCGATGCCATGTCCCAGACATGATCTTACACTGACTAT-CATCTTCGAG
** * * *
59215597 GCTAATG-CATGTCCCAGACATGA-CTTACACT-AGC-ACTCGTC-TCAAT
1 GCCGATGCCATGTCCCAGACATGATCTTACACTGA-CTA-TCATCTTCGAG
* * * * ** *
59215643 GCCGATGCCATGTCCCAGACAAGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGATCTTACACTGACTATCATCTTCGAG
* *
59215691 GCCGATG-CATGCCCCAGGCATG-TCTTACACT
1 GCCGATGCCATGTCCCAGACATGATCTTACACT
59215722 AGCTCGCACA
Statistics
Matches: 171, Mismatches: 29, Indels: 37
0.72 0.12 0.16
Matches are distributed among these distances:
44 10 0.06
45 16 0.09
46 59 0.35
47 33 0.19
48 20 0.12
49 32 0.19
50 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGATCTTACACTGACTATCATCTTCGAG
Found at i:59215699 original size:94 final size:91
Alignment explanation
Indices: 59215455--59215724 Score: 253
Period size: 94 Copynumber: 2.9 Consensus size: 91
59215445 ATGGGTAAAG
* * **
59215455 TGCCGATGCCATGTCCCAGATATAGTCTTACACTGGCTATCATCTTCGAGGCTGATGCCATGTCC
1 TGCCGATGCCATGTCCCAGACA-AGTCTTACACTGGCTCTCATAAT-G-GGCTGATG-CATGTCC
*
59215520 CAGACATGATCTTACACT-G-ACACATCTCG
62 CAGACATGA-CTTACACTAGCACACATCTCA
* * * * *
59215549 TAGCCGATG-CATGTCCTAGACATGTCTTATACTGGCTTACGTCTTAA--GGCTAATGCATGTCC
1 T-GCCGATGCCATGTCCCAGACAAGTCTTACACTGGC-T-C-TCATAATGGGCTGATGCATGTCC
* *
59215611 CAGACATGACTTACACTAGCACTCGTCTCAA
62 CAGACATGACTTACACTAGCACACATCTC-A
* *
59215642 TGCCGATGCCATGTCCCAGACAAGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGCCCCA
1 TGCCGATGCCATGTCCCAGACAA-GTCTTACACTGGCTCTCATAATG-GGCTGATGCATGTCCCA
* *
59215707 GGCATGTCTTACACTAGC
64 GACATGACTTACACTAGC
59215725 TCGCACAAAT
Statistics
Matches: 143, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
90 8 0.06
91 22 0.15
92 22 0.15
93 26 0.18
94 55 0.38
95 7 0.05
96 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (91 bp):
TGCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATAATGGGCTGATGCATGTCCCAGA
CATGACTTACACTAGCACACATCTCA
Found at i:59219893 original size:47 final size:47
Alignment explanation
Indices: 59219839--59219994 Score: 195
Period size: 47 Copynumber: 3.2 Consensus size: 47
59219829 TTAGGATTTT
* **
59219839 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
*
59219886 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--TGTGTATATAT--GTGATAAGGCCGAATGGCCA
** ** *
59219937 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
59219984 ATGTGATGAAT
1 ATGTGATGAAT
59219995 NNNNNNNNNN
Statistics
Matches: 95, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
47 47 0.49
49 15 0.16
51 33 0.35
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:59240096 original size:48 final size:48
Alignment explanation
Indices: 59240025--59240314 Score: 463
Period size: 48 Copynumber: 6.0 Consensus size: 48
59240015 CAAGATAAAT
* *
59240025 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
59240073 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
59240121 ATATATGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** **
59240169 ATACGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
59240217 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
59240265 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
59240313 AT
1 AT
59240315 GTGTGTATAT
Statistics
Matches: 221, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 221 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:59240505 original size:37 final size:37
Alignment explanation
Indices: 59240455--59240564 Score: 184
Period size: 37 Copynumber: 3.0 Consensus size: 37
59240445 GGAAATATAT
*
59240455 TCCGGGTAAGACCCGATGACTACGTATGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
59240492 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
59240529 TCCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
59240565 TCGAGCTAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:59247870 original size:43 final size:43
Alignment explanation
Indices: 59247823--59247939 Score: 130
Period size: 42 Copynumber: 2.7 Consensus size: 43
59247813 TCCTAGACGT
* *
59247823 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAA
1 GGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAA
* ** * * *
59247866 GGTCTTATACAAAATCATATA-CGATGCCAATGTCCTAGACAT
1 GGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAA
59247908 GGTCTTACACGTAACTCACAA-ATCGATGCCAA
1 GGTCTTACACGTAA-TCA-AATATCGATGCCAA
59247940 CGTCTTAAAC
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
42 29 0.49
43 20 0.34
44 10 0.17
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAA
Found at i:59251906 original size:43 final size:43
Alignment explanation
Indices: 59251835--59251918 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
59251825 GAGATATGTG
** *
59251835 GCATCTGAGCTCGTTGAAAGGTTTGAGTTCATTATGGATGCGA
1 GCATCTGAGCTCGTTGAAAGGTCCGAGTTCATAATGGATGCGA
59251878 GCATCTGAGCTCGTTGAGAA-GTCCGAGTTCATAATGGATGC
1 GCATCTGAGCTCGTTGA-AAGGTCCGAGTTCATAATGGATGC
59251919 AATTCATGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 35 0.95
44 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (43 bp):
GCATCTGAGCTCGTTGAAAGGTCCGAGTTCATAATGGATGCGA
Found at i:59253412 original size:23 final size:23
Alignment explanation
Indices: 59253382--59253432 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
59253372 TCCTAATACG
* *
59253382 CACGGGTGTGCGCATTGTCTCTA
1 CACGGGTGTGCGCATTGCCTCCA
59253405 CACGGGTGTGCGCATTGCCTCCA
1 CACGGGTGTGCGCATTGCCTCCA
59253428 CACGG
1 CACGG
59253433 ACGTGTGAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.14, C:0.31, G:0.31, T:0.24
Consensus pattern (23 bp):
CACGGGTGTGCGCATTGCCTCCA
Found at i:59255979 original size:43 final size:43
Alignment explanation
Indices: 59255896--59256040 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 43
59255886 TATGTGTTTT
* *
59255896 CGTGTAAGACCACGTC-GGGACGTTAGCATCG-ACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGATTTA
* *
59255939 CGTGTAAGACCATGTCTGGGACATTGGCAACGTATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTTA
* ** * *
59255981 CGTGGAAGACCTTGTCTGAGACAGTGGCATCGATATTTGA-TTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-TATTTGATTTA
*
59256024 CATGTAAGACCACGTCT
1 CGTGTAAGACCACGTCT
59256041 TTCTAAGCTA
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
42 29 0.34
43 41 0.48
44 14 0.16
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTTA
Done.