Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 191 of 295
Found at i:60700881 original size:68 final size:71
Alignment explanation
Indices: 60700759--60700898 Score: 180
Period size: 68 Copynumber: 2.0 Consensus size: 71
60700749 AGACTCACCA
* * *
60700759 CAGCTCGTATGAGCTTACTGATATATCAGCTCGTAAGAGCTTACTGTTTCAGCTCATTGGAGCTT
1 CAGCTCGTATGAGCTTACT-ATATATCAGCTCGTAAGAGCTTACTATTTCAGCTCAATAGAGCTT
60700824 ACCGTTT
65 ACCGTTT
* *
60700831 CAGCTCGTATGAGCTTA-T-TGT-TCAGCTCG-ATAGAGCTTACTATTTTAGCTCAATAGAGCTT
1 CAGCTCGTATGAGCTTACTATATATCAGCTCGTA-AGAGCTTACTATTTCAGCTCAATAGAGCTT
*
60700892 ACTGTTT
65 ACCGTTT
60700899 ATCAACTCAG
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
67 1 0.02
68 40 0.66
69 2 0.03
71 1 0.02
72 17 0.28
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (71 bp):
CAGCTCGTATGAGCTTACTATATATCAGCTCGTAAGAGCTTACTATTTCAGCTCAATAGAGCTTA
CCGTTT
Found at i:60702402 original size:18 final size:18
Alignment explanation
Indices: 60702379--60702423 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
60702369 GCCACTGTCC
60702379 CTTCTTCCTCACCT-ACAT
1 CTTCTTCCTCA-CTGACAT
*
60702397 CTTCTTTCTCACTGACAT
1 CTTCTTCCTCACTGACAT
60702415 CTTCTTCCT
1 CTTCTTCCT
60702424 TATTTACGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 2 0.08
18 22 0.92
ACGTcount: A:0.13, C:0.40, G:0.02, T:0.44
Consensus pattern (18 bp):
CTTCTTCCTCACTGACAT
Found at i:60704877 original size:27 final size:27
Alignment explanation
Indices: 60704847--60705024 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60704837 ATATTGAGTC
* * * *
60704847 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
60704874 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60704901 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
60704929 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
60704956 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
60704983 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60705010 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60705025 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:60704986 original size:82 final size:81
Alignment explanation
Indices: 60704868--60705023 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60704858 TGCTATATAA
* *
60704868 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
60704933 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
60704950 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
60705014 CACTTAGTGC
65 CACTTAGTGC
60705024 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:60707174 original size:47 final size:47
Alignment explanation
Indices: 60707099--60707261 Score: 195
Period size: 47 Copynumber: 3.5 Consensus size: 47
60707089 ATCCACAAGT
*
60707099 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATACCTAGTTACATCTCTC
* * * * * * * * ***
60707146 GAACTCGGAATCAACTCAACAAGTTCGGACA-TTCGCATCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTCGGATACCTAG-TTACATCTCTC
60707192 GAACTCGGACTCAACTCAACGAGCTCGGATACCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATACCTAGTTACATCTCTC
60707239 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
60707262 TTCAGACATT
Statistics
Matches: 90, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
46 34 0.38
47 56 0.62
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATACCTAGTTACATCTCTC
Found at i:60707181 original size:93 final size:93
Alignment explanation
Indices: 60707052--60707316 Score: 431
Period size: 93 Copynumber: 2.8 Consensus size: 93
60707042 CACCCATAAG
* * * *
60707052 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60707117 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
60707145 CGAACTCGGAATCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
60707210 ACGAGCTCGGATACCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
60707238 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
60707303 ATGAGTTCGGATGC
66 ACGAGCTCGGATGC
60707317 TCAACCATCC
Statistics
Matches: 158, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:60707220 original size:46 final size:46
Alignment explanation
Indices: 60707045--60707313 Score: 231
Period size: 46 Copynumber: 5.8 Consensus size: 46
60707035 TGTAACCCAC
* * *
60707045 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
60707091 CCACAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * * *
60707137 ACATCTCTCGAACTCGGAATCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * *
60707184 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATACCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACA-TTCGCAT
* *** * * *
60707230 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGTAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
60707277 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
60707314 TGCTCAACCA
Statistics
Matches: 173, Mismatches: 40, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
46 99 0.57
47 65 0.38
49 4 0.02
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:60708229 original size:21 final size:21
Alignment explanation
Indices: 60708204--60708246 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
60708194 TTCGGCCATG
60708204 GGGTTGAAGATGAGCAAAATT
1 GGGTTGAAGATGAGCAAAATT
60708225 GGGTTGAAGATGAGCAAAATT
1 GGGTTGAAGATGAGCAAAATT
60708246 G
1 G
60708247 TCTTTTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.35, T:0.23
Consensus pattern (21 bp):
GGGTTGAAGATGAGCAAAATT
Found at i:60717428 original size:18 final size:18
Alignment explanation
Indices: 60717405--60717450 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
60717395 GCACAACTCC
60717405 TTTTTTATATTAAAATAT
1 TTTTTTATATTAAAATAT
*
60717423 TTTTTTA-AATAAAATAT
1 TTTTTTATATTAAAATAT
60717440 TATTTTT-TATT
1 T-TTTTTATATT
60717451 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTTATATTAAAATAT
Found at i:60717764 original size:13 final size:13
Alignment explanation
Indices: 60717746--60717770 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60717736 CCATCCACCG
60717746 AAAGAGAGAAAGA
1 AAAGAGAGAAAGA
60717759 AAAGAGAGAAAG
1 AAAGAGAGAAAG
60717771 GAGAAGAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AAAGAGAGAAAGA
Found at i:60718013 original size:60 final size:60
Alignment explanation
Indices: 60717943--60718061 Score: 193
Period size: 60 Copynumber: 2.0 Consensus size: 60
60717933 AATTTTTTTA
* * * *
60717943 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTAGTGTTTG
*
60718003 TAATTATTTTAAAATTAATTTATTTGTAATTTAGGATTAAGTTATAAATTGTAGTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTAGTGTTT
60718062 AGTTTAGTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.54
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTAGTGTTTG
Found at i:60720184 original size:33 final size:33
Alignment explanation
Indices: 60720147--60720209 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
60720137 TCCTAGTCTA
*
60720147 TATCCACCG-TACTACTTCACTCCTCCCGACCCG
1 TATCCACCGCT-CTACTCCACTCCTCCCGACCCG
*
60720180 TATCCACCGCTGTACTCCACTCCTCCCGAC
1 TATCCACCGCTCTACTCCACTCCTCCCGAC
60720210 TCAAGTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.17, C:0.49, G:0.10, T:0.24
Consensus pattern (33 bp):
TATCCACCGCTCTACTCCACTCCTCCCGACCCG
Found at i:60720457 original size:20 final size:21
Alignment explanation
Indices: 60720424--60720463 Score: 64
Period size: 20 Copynumber: 1.9 Consensus size: 21
60720414 TTTTTTGGTA
60720424 TTTTGTTGATCAATTTAAATTT
1 TTTTGTTGA-CAATTTAAATTT
60720446 TTTTGTTG-CAATTTAAAT
1 TTTTGTTGACAATTTAAAT
60720464 AGTCAAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
22 8 0.44
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.57
Consensus pattern (21 bp):
TTTTGTTGACAATTTAAATTT
Found at i:60720531 original size:76 final size:76
Alignment explanation
Indices: 60720399--60720540 Score: 182
Period size: 76 Copynumber: 1.9 Consensus size: 76
60720389 AATAACTTTA
* *
60720399 TATTTATGTAATGAATTTTTTGGTATTTTGTTGATCAATTTAAATTTTTTTGTTGCAATTTAAAT
1 TATTTATGTAATGAATTTTTTGGTATTTTATTGATCAATTTAAATTTATTTGTTGCAATTTAAAT
60720464 AGTCAAGTTTG
66 AGTCAAGTTTG
* * * *
60720475 TATTTATGTAATGACTTTTTT-GTCATTTTATTTATCAGTTT-TATGGTTATTT-TTGCAATTTA
1 TATTTATGTAATGAATTTTTTGGT-ATTTTATTGATCAATTTAAAT--TTATTTGTTGCAATTTA
60720537 AATA
63 AATA
60720541 AATAAACTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
75 4 0.07
76 48 0.84
77 5 0.09
ACGTcount: A:0.27, C:0.05, G:0.13, T:0.56
Consensus pattern (76 bp):
TATTTATGTAATGAATTTTTTGGTATTTTATTGATCAATTTAAATTTATTTGTTGCAATTTAAAT
AGTCAAGTTTG
Found at i:60721308 original size:16 final size:16
Alignment explanation
Indices: 60721287--60721319 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
60721277 GAAGATAGAT
60721287 GAAATCGGAAGATGTC
1 GAAATCGGAAGATGTC
60721303 GAAATCGGAAGATGTC
1 GAAATCGGAAGATGTC
60721319 G
1 G
60721320 TGTTTTCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.33, T:0.18
Consensus pattern (16 bp):
GAAATCGGAAGATGTC
Found at i:60723223 original size:27 final size:27
Alignment explanation
Indices: 60723193--60723269 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 27
60723183 TGTAGGCCCC
* * *
60723193 ACCAGTCATGCCTTTGAGATAGGCTCA
1 ACCAGTCACGCCTGTCAGATAGGCTCA
* *
60723220 ACCAGTTACGGCTGTCAGATAGGCTCA
1 ACCAGTCACGCCTGTCAGATAGGCTCA
* * * *
60723247 ACTAGTTACGGCTGTTAGATAGG
1 ACCAGTCACGCCTGTCAGATAGG
60723270 TGCAACCCGT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (27 bp):
ACCAGTCACGCCTGTCAGATAGGCTCA
Found at i:60723275 original size:27 final size:27
Alignment explanation
Indices: 60723209--60723269 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
60723199 CATGCCTTTG
60723209 AGATAGGCTCAACCAGTTACGGCTGTC
1 AGATAGGCTCAACCAGTTACGGCTGTC
* *
60723236 AGATAGGCTCAACTAGTTACGGCTGTT
1 AGATAGGCTCAACCAGTTACGGCTGTC
60723263 AGATAGG
1 AGATAGG
60723270 TGCAACCCGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (27 bp):
AGATAGGCTCAACCAGTTACGGCTGTC
Found at i:60727869 original size:20 final size:21
Alignment explanation
Indices: 60727844--60727882 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
60727834 TTTAGTTACA
60727844 AATAATTA-AATATAAATATT
1 AATAATTATAATATAAATATT
*
60727864 AATAATTATATTATAAATA
1 AATAATTATAATATAAATA
60727883 AAATAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AATAATTATAATATAAATATT
Found at i:60727887 original size:20 final size:20
Alignment explanation
Indices: 60727843--60727888 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
60727833 TTTTAGTTAC
60727843 AAATAATTAAATATAAATAT
1 AAATAATTAAATATAAATAT
* *
60727863 TAATAATTATATTATAAATA-
1 AAATAATTA-AATATAAATAT
60727883 AAATAA
1 AAATAA
60727889 ATACACAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AAATAATTAAATATAAATAT
Found at i:60728026 original size:15 final size:15
Alignment explanation
Indices: 60728006--60728037 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
60727996 CTGAACAAGC
60728006 TTTGTTCGTGTTCAG
1 TTTGTTCGTGTTCAG
60728021 TTTGTTCGTGTTCAG
1 TTTGTTCGTGTTCAG
60728036 TT
1 TT
60728038 CGTTTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.25, T:0.56
Consensus pattern (15 bp):
TTTGTTCGTGTTCAG
Found at i:60731090 original size:21 final size:22
Alignment explanation
Indices: 60731064--60731110 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
60731054 CTCTGCTCAA
*
60731064 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
60731085 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
60731107 ACTC
1 ACTC
60731111 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:60744885 original size:24 final size:22
Alignment explanation
Indices: 60744830--60744894 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 22
60744820 TCTCTCTCAC
*
60744830 TTTTTCCTTTC-TTTTTTCATT
1 TTTTTTCTTTCTTTTTTTCATT
60744851 TTTCTTGTCTTTCTTTTTTTCAATCT
1 TTT-TT-TCTTTCTTTTTTTC-AT-T
60744877 TTTTTTCTTGTACTTTTT
1 TTTTTTCTT-T-CTTTTT
60744895 CTTTCAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
21 3 0.08
22 2 0.06
23 5 0.14
24 11 0.31
25 5 0.14
26 10 0.28
ACGTcount: A:0.06, C:0.17, G:0.03, T:0.74
Consensus pattern (22 bp):
TTTTTTCTTTCTTTTTTTCATT
Found at i:60753343 original size:51 final size:52
Alignment explanation
Indices: 60753265--60753399 Score: 150
Period size: 51 Copynumber: 2.6 Consensus size: 52
60753255 ACGGATACCC
* * *
60753265 AGTGGCCTGCACATAGTAACACCCTTGTAGTCAAAGCTACCTTT-TTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTAGTCAAAGCTACCTTTCTTCACAA
* * * **
60753316 AGTGGTCTTCATATAGTACCACACTTGT-GACCAAAGCTGTCTTTCTTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTAG-TCAAAGCTACCTTTCTTCACAA
* *
60753368 AGTGGCCTTTACATAGTACCTCACTTG-AGTCA
1 AGTGGCCTTCACATAGTACCACACTTGTAGTCA
60753400 CTAGTGACAT
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
50 1 0.01
51 36 0.53
52 31 0.46
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.30
Consensus pattern (52 bp):
AGTGGCCTTCACATAGTACCACACTTGTAGTCAAAGCTACCTTTCTTCACAA
Found at i:60760372 original size:48 final size:48
Alignment explanation
Indices: 60760310--60760666 Score: 624
Period size: 48 Copynumber: 7.4 Consensus size: 48
60760300 TATATATGTG
*
60760310 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATGTGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
60760358 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
60760406 TGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGACATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
60760454 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
60760502 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
60760550 CGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGTTATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
60760598 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
60760646 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
60760667 GTGATTCGGC
Statistics
Matches: 297, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 297 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:60760889 original size:37 final size:37
Alignment explanation
Indices: 60760839--60760978 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
60760829 GGAAATATAT
*
60760839 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
60760876 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
60760913 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
60760950 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
60760979 GGACTATTCG
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:60763568 original size:45 final size:45
Alignment explanation
Indices: 60763504--60763594 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
60763494 GAACTATGTG
* * *
60763504 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGAC
1 ATCTGAACTCATGGAGTTGTGGTATGAGTTCATGATATATACGAC
* *
60763549 ATCTGAGCTCATGGAGTTGTGGTATGAGTTCATGATGTATACGAC
1 ATCTGAACTCATGGAGTTGTGGTATGAGTTCATGATATATACGAC
60763594 A
1 A
60763595 CATGTTTTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.35
Consensus pattern (45 bp):
ATCTGAACTCATGGAGTTGTGGTATGAGTTCATGATATATACGAC
Found at i:60780131 original size:22 final size:22
Alignment explanation
Indices: 60780106--60780153 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
60780096 CAGCACAGGT
60780106 GTGTCCCTTAGACCACACGGGC
1 GTGTCCCTTAGACCACACGGGC
*
60780128 GTGTCCCTTGGACCACACGGGC
1 GTGTCCCTTAGACCACACGGGC
60780150 GTGT
1 GTGT
60780154 GAGCCCTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.33, G:0.31, T:0.21
Consensus pattern (22 bp):
GTGTCCCTTAGACCACACGGGC
Found at i:60786664 original size:40 final size:40
Alignment explanation
Indices: 60786633--60786723 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
60786623 GGACTAAGAT
* *
60786633 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
60786673 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
60786713 CCGAAGGCATT
1 CCGAAGGCATT
60786724 GTATGAGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.04
40 46 0.96
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
Found at i:60788957 original size:20 final size:21
Alignment explanation
Indices: 60788916--60788958 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
60788906 AAACTTGTAT
*
60788916 ATCTATCAACAAGCATTCAAA
1 ATCTATCAACAAACATTCAAA
*
60788937 ATCTATCATCAAACA-TCAAA
1 ATCTATCAACAAACATTCAAA
60788957 AT
1 AT
60788959 ACATTCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26
Consensus pattern (21 bp):
ATCTATCAACAAACATTCAAA
Found at i:60804026 original size:24 final size:24
Alignment explanation
Indices: 60803981--60804026 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
60803971 GCTAACTGAG
* *
60803981 TGCCGATTTTGTTTCTAGCTTTGC
1 TGCCGATTTTCTTTCTAACTTTGC
60804005 TGCCGA-TTTCTTTCTCAACTTT
1 TGCCGATTTTCTTTCT-AACTTT
60804027 TCTCATCGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.11, C:0.24, G:0.15, T:0.50
Consensus pattern (24 bp):
TGCCGATTTTCTTTCTAACTTTGC
Found at i:60809049 original size:27 final size:27
Alignment explanation
Indices: 60809018--60809195 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60809008 TAAATTGTAC
60809018 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60809045 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60809071 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60809099 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60809127 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60809154 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60809181 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60809196 GACGCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60809132 original size:82 final size:81
Alignment explanation
Indices: 60809019--60809174 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60809009 AAATTGTACA
* *
60809019 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60809083 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60809100 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60809165 TGCGAGTTGA
65 TGCGAATTGA
60809175 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60809186 original size:82 final size:81
Alignment explanation
Indices: 60809015--60809195 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60809005 GATTAAATTG
* *
60809015 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60809080 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60809096 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60809160 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60809178 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60809196 GACGCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60817232 original size:27 final size:27
Alignment explanation
Indices: 60817201--60817378 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60817191 TAAATTGTAC
60817201 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60817228 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60817254 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60817282 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60817310 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60817337 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60817364 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60817379 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60817315 original size:82 final size:81
Alignment explanation
Indices: 60817202--60817357 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60817192 AAATTGTACA
* *
60817202 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60817266 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60817283 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60817348 TGCGAGTTGA
65 TGCGAATTGA
60817358 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60817369 original size:82 final size:81
Alignment explanation
Indices: 60817198--60817378 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60817188 GATTAAATTG
* *
60817198 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60817263 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60817279 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60817343 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60817361 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60817379 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60822484 original size:12 final size:12
Alignment explanation
Indices: 60822467--60822491 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60822457 GTAAAATTCT
60822467 AGGAAATTTTCC
1 AGGAAATTTTCC
60822479 AGGAAATTTTCC
1 AGGAAATTTTCC
60822491 A
1 A
60822492 AGTGAGCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (12 bp):
AGGAAATTTTCC
Found at i:60827404 original size:46 final size:46
Alignment explanation
Indices: 60827354--60827526 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
60827344 TGGTTGAGCA
60827354 TCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60827400 TCCGAACTCGTT-AAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAA-TTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
60827445 CATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60827493 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAATTGAGTCCGAGTTCACTTA
60827527 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 57 0.56
47 25 0.25
48 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60827510 original size:93 final size:93
Alignment explanation
Indices: 60827351--60827521 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
60827341 GGATGGTTGA
* * *
60827351 GCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCGAACTCGTTGAATTAAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
60827416 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
60827444 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAATTAAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
60827509 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60827522 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAATTAAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60828422 original size:18 final size:19
Alignment explanation
Indices: 60828389--60828424 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
60828379 CCCTGTTCTG
*
60828389 AATTTAAAAATTAATAATA
1 AATTTAAAAATAAATAATA
60828408 AATTTAAAAA-AAATAAT
1 AATTTAAAAATAAATAAT
60828425 TAGACGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATTTAAAAATAAATAATA
Found at i:60836203 original size:79 final size:80
Alignment explanation
Indices: 60836068--60836291 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 80
60836058 TTGAATGCTG
* * * *
60836068 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATTCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
*
60836129 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
60836147 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
60836211 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * * *
60836226 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
60836290 TG
65 TG
60836292 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
78 10 0.08
79 61 0.47
80 56 0.43
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:60836305 original size:40 final size:40
Alignment explanation
Indices: 60836068--60836291 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
60836058 TTGAATGCTG
* *
60836068 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * * *
60836107 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
60836147 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
60836186 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
60836226 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60836267 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60836292 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 53 0.33
40 99 0.61
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60836309 original size:80 final size:79
Alignment explanation
Indices: 60836120--60836314 Score: 227
Period size: 80 Copynumber: 2.5 Consensus size: 79
60836110 GGACTAAGAT
** * * *
60836120 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAATTACTA
60836184 AATCCGGGCTAAGTC
65 AATCCGGGCTAAGTC
** * *
60836199 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCTGAAGGCATTTGTGCGAATTACTA
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAAGGCATTTGTGCGAATTACTA
*
60836264 TAA-CCGGGCTATGTC
65 -AATCCGGGCTAAGTC
*
60836279 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
60836315 ATTCCGAAGG
Statistics
Matches: 103, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 41 0.40
80 59 0.57
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAATTACTAA
ATCCGGGCTAAGTC
Found at i:60843951 original size:40 final size:40
Alignment explanation
Indices: 60843806--60844109 Score: 413
Period size: 40 Copynumber: 7.7 Consensus size: 40
60843796 TTGAATGCTG
* *
60843806 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * * *
60843845 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60843885 TCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
60843924 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60843964 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60844004 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60844044 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60844085 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60844110 AACGAGGAGC
Statistics
Matches: 240, Mismatches: 18, Indels: 13
0.89 0.07 0.05
Matches are distributed among these distances:
39 52 0.22
40 178 0.74
41 10 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60849165 original size:24 final size:24
Alignment explanation
Indices: 60849120--60849165 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
60849110 GCTAACTGAG
*
60849120 TGCCGATTTTGTTTCTAGCTTTGC
1 TGCCGATTTTGTTTCTAACTTTGC
60849144 TGCCGA-TTTGTTTCTCAACTTT
1 TGCCGATTTTGTTTCT-AACTTT
60849166 TCTGGTTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.11, C:0.22, G:0.17, T:0.50
Consensus pattern (24 bp):
TGCCGATTTTGTTTCTAACTTTGC
Found at i:60852180 original size:27 final size:27
Alignment explanation
Indices: 60852128--60852180 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
60852118 GACCTCAATT
* **
60852128 TGTAAAATCACTGAAATACCTTTGTAG
1 TGTAAAATCACCGAAATACCCCTGTAG
*
60852155 TGTAAAATGACCGAAATACCCCTGTA
1 TGTAAAATCACCGAAATACCCCTGTA
60852181 TGATAGAATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (27 bp):
TGTAAAATCACCGAAATACCCCTGTAG
Found at i:60855466 original size:27 final size:28
Alignment explanation
Indices: 60855435--60855491 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
60855425 TCTGATACTG
*
60855435 ATTCTG-TATTGGGCTTAGGCCCACCTA
1 ATTCTGTTATTGGGCTAAGGCCCACCTA
60855462 ATTCTGTTATTGGGCTAAGGCCCACCTA
1 ATTCTGTTATTGGGCTAAGGCCCACCTA
60855490 AT
1 AT
60855492 ACTATTTCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (28 bp):
ATTCTGTTATTGGGCTAAGGCCCACCTA
Found at i:60858605 original size:44 final size:42
Alignment explanation
Indices: 60858478--60858629 Score: 112
Period size: 43 Copynumber: 3.5 Consensus size: 42
60858468 GCTATGGCTA
* * * * *
60858478 TTAA-AAATGGCACTGAGTGTGCAAAAATATAACAGCAAT-GG
1 TTAATAAATGGCACTAAGTGTGCAATAATATTATAGC-TTCGG
* * ** *
60858519 CTGAATAAATGGCACTATGTGTGCAATACCAATATAAG-TTCGG
1 -TTAATAAATGGCACTAAGTGTGCAATAATATTAT-AGCTTCGG
60858562 TTTAATGAAATGGCACTAAGTGTGCAATAATATTATAGCTTCGG
1 -TTAAT-AAATGGCACTAAGTGTGCAATAATATTATAGCTTCGG
* * *
60858606 CTAATTAATTGGAACTAAGTGTGC
1 TTAA-TAAATGGCACTAAGTGTGC
60858630 TAGTTCAAAG
Statistics
Matches: 85, Mismatches: 19, Indels: 11
0.74 0.17 0.10
Matches are distributed among these distances:
42 4 0.05
43 48 0.56
44 33 0.39
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (42 bp):
TTAATAAATGGCACTAAGTGTGCAATAATATTATAGCTTCGG
Found at i:60866599 original size:46 final size:46
Alignment explanation
Indices: 60866422--60866823 Score: 222
Period size: 46 Copynumber: 8.5 Consensus size: 46
60866412 TTTGTGTGCT
* * *
60866422 AGTGTAAGA-CATATCTGGGACATGCATTGGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-CACGA-GATGTA-AGCC
* * * * * * *
60866468 AGTGTAAGACCATGTCTAGGACAGGCATCGACATTGAAACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCA-CGAGATGTA-AGCC
* *
60866515 AGTCTAAGA-CATGTCTGGGACATGCATCAGC-CTTGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCAC--GAGATGTAAGCC
* *
60866561 AGTGTAAGA-CATGTCTGGGACATGCATTGGCTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGC-ACGAGATGTAAGCC
* * *
60866605 AGTGTAAGACCATGTCTGGGACATGCCATCAGCACGTATCGAGGT--GTC
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGCACG-A--GATGTAAGCC
* * *
60866653 AGTGTAAGATCATGTCTGGGACATGGCATCGGCACGAAAATGTGAGACC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCACG-AGATGTAAG-CC
* ** ** * *
60866702 TAGTATAAGACCATGTCTGGGACATGGTGTCGGC-CTCGATTTCGATAG-T
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGGCACGAGATGT--A-AGCC
* *
60866751 ATGTGTAAGACCATGTCTGGGACATGGCATCGACATGATGGATG--AGCC
1 A-GTGTAAGACCATGTCTGGGACAT-GCATCGGCACGA--GATGTAAGCC
60866799 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
60866824 GTATCGGTAT
Statistics
Matches: 280, Mismatches: 50, Indels: 52
0.73 0.13 0.14
Matches are distributed among these distances:
44 11 0.04
45 18 0.06
46 81 0.29
47 57 0.20
48 48 0.17
49 31 0.11
50 29 0.10
51 2 0.01
52 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCACGAGATGTAAGCC
Found at i:60866667 original size:48 final size:43
Alignment explanation
Indices: 60866519--60866689 Score: 173
Period size: 48 Copynumber: 3.7 Consensus size: 43
60866509 AGAGCTAGTC
* * *
60866519 TAAGACATGTCTGGGACATGCATCAGC-CTTGAGATGTAAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCAC--GAGAGGT--GTCAGTG
* *
60866565 TAAGACATGTCTGGGACATGCATTGGCTACGAGATGTGTCAGTG
1 TAAGACATGTCTGGGACATGCATCGGC-ACGAGAGGTGTCAGTG
*
60866609 TAAGACCATGTCTGGGACATGCCATCAGCACGTATCGAGGTGTCAGTG
1 TAAGA-CATGTCTGGGACATG-CATCGGCACG-A--GAGGTGTCAGTG
60866657 TAAGATCATGTCTGGGACATGGCATCGGCACGA
1 TAAGA-CATGTCTGGGACAT-GCATCGGCACGA
60866690 AAATGTGAGA
Statistics
Matches: 109, Mismatches: 8, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
44 11 0.10
45 18 0.17
46 38 0.35
47 1 0.01
48 40 0.37
49 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (43 bp):
TAAGACATGTCTGGGACATGCATCGGCACGAGAGGTGTCAGTG
Found at i:60866779 original size:99 final size:96
Alignment explanation
Indices: 60866654--60866830 Score: 250
Period size: 96 Copynumber: 1.8 Consensus size: 96
60866644 CGAGGTGTCA
*
60866654 GTGTAAGATCATGTCTGGGACATGGCATCGGCACGAAAAT-G-TGAGACCTAGTATAAGACCATG
1 GTGTAAGACCATGTCTGGGACATGGCATC-G-AC-AAAATGGATGAG-CC-AGTATAAGACCATG
*
60866717 TCTGGGACATGGTGTCGGCCTCGATTTCGATAGTAT
61 TCTGGGACATGGTATCGGCCTCGATTTCGATAGTAT
** *
60866753 GTGTAAGACCATGTCTGGGACATGGCATCGACATGATGGATGAGCCAGTGTAAGACCATGTCTGG
1 GTGTAAGACCATGTCTGGGACATGGCATCGACAAAATGGATGAGCCAGTATAAGACCATGTCTGG
60866818 GACATGGTATCGG
66 GACATGGTATCGG
60866831 TATTATACCC
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
96 33 0.46
97 5 0.07
98 5 0.07
99 28 0.39
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACAAAATGGATGAGCCAGTATAAGACCATGTCTGG
GACATGGTATCGGCCTCGATTTCGATAGTAT
Found at i:60870423 original size:10 final size:10
Alignment explanation
Indices: 60870408--60870456 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
60870398 TTTATTTCCT
60870408 TATGACTTAC
1 TATGACTTAC
60870418 TATGACTTAC
1 TATGACTTAC
* *
60870428 TA-GGCTATAA
1 TATGACT-TAC
*
60870438 AATGACTTAC
1 TATGACTTAC
60870448 TATGACTTA
1 TATGACTTA
60870457 GTAAGCTATA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
9 3 0.10
10 25 0.81
11 3 0.10
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (10 bp):
TATGACTTAC
Found at i:60870443 original size:30 final size:31
Alignment explanation
Indices: 60870409--60870479 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 31
60870399 TTATTTCCTT
*
60870409 ATGACTTACTATGACTTACTAGGCTATA-AA
1 ATGACTTACTATGACTTACTAAGCTATAGAA
*
60870439 ATGACTTACTATGACTTAGTAAGCTATAGAA
1 ATGACTTACTATGACTTACTAAGCTATAGAA
*
60870470 A-GACTGACTA
1 ATGACTTACTA
60870480 AGCTATAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 34 0.92
31 3 0.08
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (31 bp):
ATGACTTACTATGACTTACTAAGCTATAGAA
Found at i:60878284 original size:31 final size:30
Alignment explanation
Indices: 60878249--60878306 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
60878239 CTAACTCAAA
60878249 CTTTGAAAAAATTACAATTTTGCCCCTAAAC
1 CTTTG-AAAAATTACAATTTTGCCCCTAAAC
* * * *
60878280 CTTTGCAGAATTACGATTTTTCCCCTA
1 CTTTGAAAAATTACAATTTTGCCCCTA
60878307 GGCTCAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 18 0.78
31 5 0.22
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (30 bp):
CTTTGAAAAATTACAATTTTGCCCCTAAAC
Found at i:60895317 original size:9 final size:9
Alignment explanation
Indices: 60895299--60895328 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
60895289 AGAAAGCGAG
60895299 AGAAGAAAA
1 AGAAGAAAA
*
60895308 AGATGAAAA
1 AGAAGAAAA
60895317 AGAAGAAAA
1 AGAAGAAAA
60895326 AGA
1 AGA
60895329 GATGGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.03
Consensus pattern (9 bp):
AGAAGAAAA
Found at i:60898509 original size:51 final size:50
Alignment explanation
Indices: 60898415--60898532 Score: 118
Period size: 51 Copynumber: 2.4 Consensus size: 50
60898405 TGTTCTGCAT
* * *
60898415 TTAATAAAGTCATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCATCA
1 TTAATTAAGTCATGCATTAAGTAACTCTCATGTTAGTTAAGTTTACATCA
*
60898465 TTAAATTAAGTCATGCATTAAGTAACT-T-ATTTGTTCA-TTTAGTTTACATC-
1 TT-AATTAAGTCATGCATTAAGTAACTCTCA--TGTT-AGTTAAGTTTACATCA
* *
60898515 TTAATTAAATTATGCATT
1 TTAATTAAGTCATGCATT
60898533 TAAACATCTT
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
49 15 0.26
50 5 0.09
51 37 0.64
52 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (50 bp):
TTAATTAAGTCATGCATTAAGTAACTCTCATGTTAGTTAAGTTTACATCA
Found at i:60902473 original size:93 final size:93
Alignment explanation
Indices: 60902363--60902533 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
60902353 GCCCCTAAGT
* *
60902363 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
60902428 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
60902456 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
60902521 CGAGTTCGGATGC
66 CGAGTTCGGATGC
60902534 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60902530 original size:46 final size:46
Alignment explanation
Indices: 60902358--60902530 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
60902348 AACCCGCCCC
* * *
60902358 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * *
60902404 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* *
60902452 TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
*
60902497 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
60902531 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:60903753 original size:11 final size:11
Alignment explanation
Indices: 60903726--60903755 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
60903716 CAATCATATC
*
60903726 ATAATCATAAA
1 ATAATTATAAA
60903737 ATAATTATAAA
1 ATAATTATAAA
60903748 ATAATTAT
1 ATAATTAT
60903756 TTCTATCAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAATTATAAA
Found at i:60910099 original size:93 final size:93
Alignment explanation
Indices: 60909939--60910109 Score: 234
Period size: 93 Copynumber: 1.8 Consensus size: 93
60909929 GCCCCTAAGT
* * * * * * * *
60909939 GAACTCGGACTCAACACAATGAGCTTGGGCGTTCGCATCCATAAATTAACTCGGATTGAACTTAA
1 GAACTCGGACTCAACACAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
60910004 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
60910032 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGCCTCAACTCAA
1 GAACTCGGACTCAACACAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
60910097 CGAGTTCGGATGC
66 CGAGTTCGGATGC
60910110 TCAACCATCC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
93 66 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACACAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60915884 original size:40 final size:40
Alignment explanation
Indices: 60915847--60916031 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
60915837 GCTACTCGTT
*
60915847 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
60915887 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
60915927 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
60915966 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
60916007 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60916032 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:60915958 original size:79 final size:82
Alignment explanation
Indices: 60915847--60916031 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
60915837 GCTACTCGTT
* * *
60915847 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTT-GGGATCTTAACCC
* *
60915910 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
60915927 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTTGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTGGGATCTTAACCCG
* *
60915990 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
60916007 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60916032 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTGGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:60923852 original size:40 final size:40
Alignment explanation
Indices: 60923815--60923999 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
60923805 GCTACTCGTT
*
60923815 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
60923855 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* **
60923895 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATGTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
60923934 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
60923975 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60924000 CATCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 75 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:60923917 original size:79 final size:81
Alignment explanation
Indices: 60923815--60923999 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
60923805 GCTACTCGTT
* * *
60923815 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
60923878 GGATTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
** **
60923895 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATGTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
60923959 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
60923975 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60924000 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:60925376 original size:46 final size:46
Alignment explanation
Indices: 60925324--60925499 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
60925314 TGTTTGGGCA
*
60925324 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *** * * * *
60925370 TTCGAACTTGTTGAGTTGAGTCCGAGTTCGAGAGAT--ATAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGAT-GCGA-ACG
* *
60925417 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
60925463 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60925500 GCGGCTTACA
Statistics
Matches: 102, Mismatches: 23, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
45 2 0.02
46 67 0.66
47 31 0.30
48 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:60925479 original size:93 final size:93
Alignment explanation
Indices: 60925320--60925491 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
60925310 AGGATGTTTG
** ** *
60925320 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTTCGAACTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60925385 TTGAGTCCGAGTTCGAGAGATATAACTA
66 TTGAGTCCGAGTTCGAGAGATATAACTA
* *
60925413 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60925478 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
60925492 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATATAACTA
Found at i:60930841 original size:46 final size:46
Alignment explanation
Indices: 60930782--60930951 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
60930772 TGGTTGAGCA
*
60930782 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACG
* * * *
60930828 TCCGAACTTGTTGAGTTGAGTCCGAGTT---C-GTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCAA--A--CG
* ** *
60930875 TCTGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACG
* *
60930921 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
60930952 TTAGGGGCGG
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 7 0.07
45 1 0.01
46 55 0.56
47 26 0.26
48 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACG
Found at i:60930938 original size:93 final size:93
Alignment explanation
Indices: 60930779--60930949 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
60930769 GGATGGTTGA
* * *
60930779 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
60930844 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** * *
60930872 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
60930937 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60930950 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60935146 original size:15 final size:15
Alignment explanation
Indices: 60935126--60935203 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
60935116 CATAGTATCG
60935126 TATCCTAGG-TTTCTT
1 TATCCT-GGATTTCTT
*
60935141 TATCCTGGATCTCTT
1 TATCCTGGATTTCTT
*
60935156 TATTCTGGATTTCTT
1 TATCCTGGATTTCTT
** *
60935171 TATTCAAGG-TTTCTC
1 TA-TCCTGGATTTCTT
*
60935186 TATCTTGGATTTCTT
1 TATCCTGGATTTCTT
60935201 TAT
1 TAT
60935204 TTGGTTTTCT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 6 0.12
15 41 0.82
16 3 0.06
ACGTcount: A:0.15, C:0.18, G:0.13, T:0.54
Consensus pattern (15 bp):
TATCCTGGATTTCTT
Found at i:60935212 original size:14 final size:15
Alignment explanation
Indices: 60935135--60935214 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
60935125 GTATCCTAGG
*
60935135 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
60935150 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
60935165 TTTCTTTATTCAAGG-
1 TTTCTTTATTC-TGGA
*
60935180 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
60935195 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
60935209 TTTCTT
1 TTTCTT
60935215 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
14 13 0.25
15 37 0.70
16 3 0.06
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:60936837 original size:27 final size:26
Alignment explanation
Indices: 60936789--60936846 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
60936779 GCGAGGCTGC
*
60936789 CAGATATTGTGACGAAGTCACCAAATA
1 CAGATATTGTGACGAAGCCACCAAA-A
* * * *
60936816 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAAAA
60936842 CAGAT
1 CAGAT
60936847 GTATATATGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:60936943 original size:67 final size:67
Alignment explanation
Indices: 60936849--60937024 Score: 280
Period size: 67 Copynumber: 2.6 Consensus size: 67
60936839 GAACAGATGT
* * *
60936849 ATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCTAGATATTGTGATGAAGTCACCAAAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAAAAC
*
60936914 AG
66 AA
* * *
60936916 ATATATGTTGCGAGGCCACCAGATTGCAACGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAAAAC
60936981 AA
66 AA
*
60936983 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTTCCAGA
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
60937025 ACGCTTCCTC
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 99 1.00
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAAAAC
AA
Found at i:60938675 original size:40 final size:40
Alignment explanation
Indices: 60938631--60938731 Score: 175
Period size: 40 Copynumber: 2.5 Consensus size: 40
60938621 CTGGCTCAAC
60938631 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
*
60938671 TGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
* *
60938711 TGCCTTCAGAACTTAGCCCGG
1 TGCCTTCGGGACTTAGCCCGG
60938732 TTATCATCCG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
Found at i:60958574 original size:40 final size:40
Alignment explanation
Indices: 60958504--60958641 Score: 208
Period size: 40 Copynumber: 3.5 Consensus size: 40
60958494 AAACCAAGTA
* * * *
60958504 CCTTTGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
60958543 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60958583 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
60958623 CCTTCGGAACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
60958642 TTATCATCCG
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 13 0.14
40 79 0.86
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60966596 original size:27 final size:27
Alignment explanation
Indices: 60966542--60966642 Score: 143
Period size: 27 Copynumber: 3.8 Consensus size: 27
60966532 AGCATGGCTG
* *
60966542 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
60966568 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
60966595 CCAGAACAAAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
*
60966622 CCAGATCAGATAATTGTGGCA
1 CCAGAACAGATAATTGTGGCA
60966643 TAGACAACAG
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
26 15 0.22
27 50 0.75
28 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:60968064 original size:24 final size:23
Alignment explanation
Indices: 60968036--60968136 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 23
60968026 CCAACTCTTG
*
60968036 CTCCTTCATCAGCTCCTAAATCTT
1 CTCCTT-ATCAGCTCCTAAATCCT
*
60968060 CTCCTTTATCAGATCCTAAATCCT
1 CTCC-TTATCAGCTCCTAAATCCT
60968084 CTCCCTTATCAGCTCCTAAATCCT
1 CT-CCTTATCAGCTCCTAAATCCT
60968108 CTCCCTTATCAGCTCCTAAATCCT
1 CT-CCTTATCAGCTCCTAAATCCT
60968132 CTCCT
1 CTCCT
60968137 GACAGCCTTT
Statistics
Matches: 72, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
23 3 0.04
24 65 0.90
25 4 0.06
ACGTcount: A:0.21, C:0.40, G:0.04, T:0.36
Consensus pattern (23 bp):
CTCCTTATCAGCTCCTAAATCCT
Found at i:60974430 original size:27 final size:27
Alignment explanation
Indices: 60974375--60974486 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 27
60974365 CAGCATGGCT
** *
60974375 ACCAGAACAGATAA-TGTGATAGAGTC
1 ACCAGAACAGATAATTGTGGCAGAGCC
60974401 ACCAGAACAGATAATTGTGGCAGAGCC
1 ACCAGAACAGATAATTGTGGCAGAGCC
*
60974428 ACCAGAACAGAT-ATATGTGGCAAAGCC
1 ACCAGAACAGATAAT-TGTGGCAGAGCC
* *
60974455 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAATTGTGGCAGAGCC
60974482 ACCAG
1 ACCAG
60974487 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
26 16 0.21
27 59 0.77
28 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.17
Consensus pattern (27 bp):
ACCAGAACAGATAATTGTGGCAGAGCC
Found at i:60975875 original size:24 final size:24
Alignment explanation
Indices: 60975847--60975947 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
60975837 CCAACTCTTG
* * *
60975847 CTCCTTGATCAGCTTCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCCT
*
60975871 CTCCTTTATCAGATCCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCCT
*
60975895 CTCCCTTATCAGCTCCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCCT
*
60975919 CTCCTTTATCAGCTTCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCCT
60975943 CTCCT
1 CTCCT
60975948 GATAGCCTTT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.21, C:0.36, G:0.05, T:0.39
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAATCCT
Found at i:60978449 original size:65 final size:65
Alignment explanation
Indices: 60978373--60978502 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
60978363 ACTCTTGAAG
60978373 GAACTTGAAGGGAGATCTCTAGTCTTGATGATGAATCC-GACTCTTGAGATGGATCAATCGGCTT
1 GAACTTGAAGGGAGATCTCTAGTCTTGATGATGAATCCAG-CTCTTGAGATGGATCAATCGGCTT
60978437 T
65 T
60978438 GAACTTGAAGGGAGATCTCTAGTCTTGATGATGAATCCAGCTCTTGAGATGGATCAATCGGCTTT
1 GAACTTGAAGGGAGATCTCTAGTCTTGATGATGAATCCAGCTCTTGAGATGGATCAATCGGCTTT
60978503 TCCCTATCTA
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
65 63 0.98
66 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (65 bp):
GAACTTGAAGGGAGATCTCTAGTCTTGATGATGAATCCAGCTCTTGAGATGGATCAATCGGCTTT
Found at i:60989515 original size:51 final size:51
Alignment explanation
Indices: 60989455--60989582 Score: 247
Period size: 51 Copynumber: 2.5 Consensus size: 51
60989445 TTAAGTCGCA
60989455 TGTGTAGTACTTAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
1 TGTGTAGTACTTAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
60989506 TGTGTAGTACTTAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
1 TGTGTAGTACTTAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
*
60989557 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTTAGTGCAGGCTACTA
60989583 CGTGTACCAG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
51 76 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTTAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
Found at i:60989643 original size:49 final size:50
Alignment explanation
Indices: 60989453--60989636 Score: 230
Period size: 51 Copynumber: 3.7 Consensus size: 50
60989443 TGTTAAGTCG
*
60989453 CATGTGTAGTACTTAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGA-TTCGATCA
* *
60989504 CGTGTGTAGTACTTAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGA-TTCGATCA
* * * *
60989555 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TT-GATCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-A-TGATTCGATCA
* *
60989604 CATGAGTAGTACTAAGTGTAGGCTACTATGCGT
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGT
60989637 GTCAGATAGC
Statistics
Matches: 121, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
49 32 0.26
50 4 0.03
51 83 0.69
52 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGATTCGATCA
Found at i:60989650 original size:100 final size:101
Alignment explanation
Indices: 60989455--60989636 Score: 244
Period size: 100 Copynumber: 1.8 Consensus size: 101
60989445 TTAAGTCGCA
* * * * *
60989455 TGTGTAGTACTTAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACGTGTGTAGTACTTAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGA-TTCGATCACATGAGTAGTACTAAG
60989520 TGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
65 TGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
* *
60989557 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TT-GATCGCATGAGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCA-A-TGATTCGATCACATGAGTAGTACTAA
*
60989619 GTGTAGGCTACTATGCGT
64 GTGCAGGCTACTATGCGT
60989637 GTCAGATAGC
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
100 33 0.47
101 4 0.06
102 31 0.44
103 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGATTCGATCACATGAGTAGTACTAAGT
GCAGGCTACTATGCGTACTCAATGACTTCGATCACG
Found at i:60996828 original size:46 final size:45
Alignment explanation
Indices: 60996761--60996935 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
60996751 TGTAACCCGC
60996761 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
60996807 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * **
60996853 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
60996900 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
60996936 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.66
47 33 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:60996881 original size:93 final size:93
Alignment explanation
Indices: 60996769--60996939 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
60996759 GCCCATAAGT
** *
60996769 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60996834 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
60996862 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
60996927 CGAGTTCGGATGC
66 CGAGCTCGGATGC
60996940 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:60999542 original size:29 final size:29
Alignment explanation
Indices: 60999503--60999581 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
60999493 CTTAATAATC
*
60999503 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
60999533 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
60999562 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
60999582 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:61000042 original size:12 final size:12
Alignment explanation
Indices: 61000025--61000050 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
61000015 GGGCATACTC
61000025 ATGTATATATAT
1 ATGTATATATAT
61000037 ATGTATATATAT
1 ATGTATATATAT
61000049 AT
1 AT
61000051 ACTTCGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
ATGTATATATAT
Found at i:61003231 original size:50 final size:49
Alignment explanation
Indices: 61003158--61003343 Score: 205
Period size: 50 Copynumber: 3.7 Consensus size: 49
61003148 ATGAATACAT
*
61003158 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTATTAAGTCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT-TCAAGTCAC
* * * *
61003208 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGA-TCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-AT-ACTTCAAGTCAC
* * * * *
61003259 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGA-TGGTGAGGTCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT--TCAAGTCAC
*
61003309 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
61003344 GGATTGTTGG
Statistics
Matches: 113, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 2 0.02
50 68 0.60
51 34 0.30
52 4 0.04
53 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (49 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTTCAAGTCAC
Found at i:61009046 original size:31 final size:31
Alignment explanation
Indices: 61009008--61009071 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
61008998 CCTTTTCATA
61009008 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
61009039 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
61009070 TT
1 TT
61009072 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:61009338 original size:24 final size:24
Alignment explanation
Indices: 61009279--61009385 Score: 137
Period size: 24 Copynumber: 4.4 Consensus size: 24
61009269 CTGGAGGCCT
61009279 AGCCTCTTTTAATAACTAGGGCA-A
1 AGCC-CTTTTAATAACTAGGGCATA
* *
61009303 ATCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
*
61009327 AGTCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
*
61009351 AGCCCTTTATCATAAC-AGGGGCATA
1 AGCCCTTT-TAATAACTA-GGGCATA
61009376 AGCCCTTTTA
1 AGCCCTTTTA
61009386 CACTTCCTCC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
23 17 0.24
24 34 0.47
25 21 0.29
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTAGGGCATA
Found at i:61009383 original size:49 final size:47
Alignment explanation
Indices: 61009279--61009385 Score: 151
Period size: 49 Copynumber: 2.2 Consensus size: 47
61009269 CTGGAGGCCT
* *
61009279 AGCCTCTTTTAATAACTAGGGCAAATCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTAGGGCAAAGCCCTTTTAATAACAGGGGCATA
* *
61009327 AGTCCTTTTAATAACTAGGGCATAAGCCCTTTATCATAACAGGGGCATA
1 AGCCCTTTTAATAACTAGGGCA-AAGCCCTTT-TAATAACAGGGGCATA
61009376 AGCCCTTTTA
1 AGCCCTTTTA
61009386 CACTTCCTCC
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
47 18 0.35
48 11 0.21
49 23 0.44
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (47 bp):
AGCCCTTTTAATAACTAGGGCAAAGCCCTTTTAATAACAGGGGCATA
Found at i:61009456 original size:9 final size:9
Alignment explanation
Indices: 61009442--61009494 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
61009432 ACATCATGTG
61009442 CATATCATA
1 CATATCATA
*
61009451 CATATCATGTG
1 CATATCA--TA
61009462 CATATCATA
1 CATATCATA
*
61009471 CATGTCATA
1 CATATCATA
61009480 TGCATATCATA
1 --CATATCATA
61009491 CATA
1 CATA
61009495 CCATGTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:61009459 original size:20 final size:20
Alignment explanation
Indices: 61009434--61009500 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
61009424 TTACGAATAC
61009434 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
61009454 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
61009474 GTCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
61009494 ACCATGT
1 ATCATGT
61009501 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:61009474 original size:15 final size:15
Alignment explanation
Indices: 61009446--61009489 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
61009436 CATGTGCATA
61009446 TCATA-CATATCATG
1 TCATATCATATCATG
61009460 TGCATATCATA-CATG
1 T-CATATCATATCATG
61009475 TCATATGCATATCAT
1 TCATAT-CATATCAT
61009490 ACATACCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.23
15 13 0.50
16 7 0.27
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.36
Consensus pattern (15 bp):
TCATATCATATCATG
Found at i:61009569 original size:25 final size:25
Alignment explanation
Indices: 61009537--61009584 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61009527 ATATATAAAC
* * *
61009537 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
61009562 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
61009585 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:61019183 original size:16 final size:16
Alignment explanation
Indices: 61019159--61019189 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
61019149 TGGATTTATC
*
61019159 AAAATACTTTATCAAT
1 AAAAGACTTTATCAAT
61019175 AAAAGACTTTATCAA
1 AAAAGACTTTATCAA
61019190 ACCAAAGATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.32
Consensus pattern (16 bp):
AAAAGACTTTATCAAT
Found at i:61020725 original size:22 final size:22
Alignment explanation
Indices: 61020690--61020732 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
61020680 TTTCGATTAC
*
61020690 AAAAACATAAAATGAACTAAAT
1 AAAAACATAAAATGAAATAAAT
61020712 AAAAAC-TAAGAATGAAATAAA
1 AAAAACATAA-AATGAAATAAA
61020733 AACCTAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.16
Consensus pattern (22 bp):
AAAAACATAAAATGAAATAAAT
Found at i:61025508 original size:46 final size:46
Alignment explanation
Indices: 61025458--61025630 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
61025448 TTGAGCATCT
61025458 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * * *
61025504 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* *
61025551 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * **
61025597 GAGCTCGTTGAGTTGAGTCCAAGTTTGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61025631 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.56
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:61025611 original size:93 final size:93
Alignment explanation
Indices: 61025452--61025621 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
61025442 GGATGGTTGA
* * *
61025452 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
61025517 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
*
61025545 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61025610 TGAGTCCAAGTT
66 TGAGTCCAAGTT
61025622 TGCTTATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:61034983 original size:29 final size:29
Alignment explanation
Indices: 61034918--61035025 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
61034908 TTCACATACC
* * *
61034918 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
61034946 T-TCAAATGGCCCATTAGGTCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
61034975 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
61035004 TTTATAAGGCCCATTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
61035026 GTCACATTCA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
27 1 0.02
28 15 0.23
29 49 0.74
30 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:61039582 original size:29 final size:30
Alignment explanation
Indices: 61039550--61039623 Score: 98
Period size: 29 Copynumber: 2.5 Consensus size: 30
61039540 AATCATATTC
**
61039550 ATATGGCCCATTAGGCTC-AAATCACCTGT
1 ATATGGCCCATTAGGCTCGAAATCAAATGT
*
61039579 ATATGGCCCATTAGG-TCGAAATCAAATTT
1 ATATGGCCCATTAGGCTCGAAATCAAATGT
*
61039608 ATATGGCCCGTTAGGC
1 ATATGGCCCATTAGGC
61039624 CCAGTCTCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
28 2 0.05
29 37 0.95
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (30 bp):
ATATGGCCCATTAGGCTCGAAATCAAATGT
Found at i:61039879 original size:24 final size:24
Alignment explanation
Indices: 61039850--61039900 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
61039840 GTAGCCAAAC
*
61039850 TTTCAGCT-TTTCGGCATTTCAACT
1 TTTCAG-TATTTCGACATTTCAACT
61039874 TTTCAGTATTTCGACATTTCAACT
1 TTTCAGTATTTCGACATTTCAACT
61039898 TTT
1 TTT
61039901 GCCGATACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.20, C:0.22, G:0.10, T:0.49
Consensus pattern (24 bp):
TTTCAGTATTTCGACATTTCAACT
Found at i:61049478 original size:18 final size:19
Alignment explanation
Indices: 61049446--61049481 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
61049436 GGTAGAAATA
61049446 ATTCTTAGATTTTTATTTC
1 ATTCTTAGATTTTTATTTC
61049465 ATTCTTAG-TTTTTATTT
1 ATTCTTAGATTTTTATTT
61049482 ATTTTTATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.19, C:0.08, G:0.06, T:0.67
Consensus pattern (19 bp):
ATTCTTAGATTTTTATTTC
Found at i:61051893 original size:23 final size:23
Alignment explanation
Indices: 61051865--61051935 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
61051855 GAAATTGGTG
61051865 TGGAATGCCATATGAAAGCATGAA
1 TGGAATGCCATATGAAAGCATG-A
** **
61051889 T-GAAT-TAATATGAAATTAGTG-
1 TGGAATGCCATATGAAAGCA-TGA
61051910 TGGAATGCCATATGAAAGCATGA
1 TGGAATGCCATATGAAAGCATGA
61051933 TGG
1 TGG
61051936 TTTGAGCATG
Statistics
Matches: 35, Mismatches: 8, Indels: 9
0.67 0.15 0.17
Matches are distributed among these distances:
21 1 0.03
22 15 0.43
23 18 0.51
24 1 0.03
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27
Consensus pattern (23 bp):
TGGAATGCCATATGAAAGCATGA
Found at i:61051905 original size:45 final size:44
Alignment explanation
Indices: 61051842--61051932 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 44
61051832 AGGTTTATAA
*
61051842 GAATGAATAATATGAAATTGGTGTGGAATGCCATATGAAAGCAT
1 GAATGAATAATATGAAATTAGTGTGGAATGCCATATGAAAGCAT
61051886 GAATGAATTAATATGAAATTAGTGTGGAATGCCATATGAAAGCAT
1 GAATGAA-TAATATGAAATTAGTGTGGAATGCCATATGAAAGCAT
61051931 GA
1 GA
61051933 TGGTTTGAGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 7 0.16
45 38 0.84
ACGTcount: A:0.42, C:0.07, G:0.24, T:0.27
Consensus pattern (44 bp):
GAATGAATAATATGAAATTAGTGTGGAATGCCATATGAAAGCAT
Found at i:61052463 original size:18 final size:18
Alignment explanation
Indices: 61052442--61052485 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
61052432 ATGTCCCAAG
*
61052442 CCACATGGTTGTGTGTCA
1 CCACACGGTTGTGTGTCA
61052460 CCACACGGTTGTGTGTCA
1 CCACACGGTTGTGTGTCA
61052478 CCACACGG
1 CCACACGG
61052486 CCTACCCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.18, C:0.30, G:0.27, T:0.25
Consensus pattern (18 bp):
CCACACGGTTGTGTGTCA
Found at i:61054395 original size:47 final size:47
Alignment explanation
Indices: 61054323--61055496 Score: 1598
Period size: 47 Copynumber: 24.6 Consensus size: 47
61054313 CCCTTCGGGA
* * * *
61054323 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
61054370 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* **
61054417 CTTATCTCATATACGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
61054464 TTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCAT--CA-----C--ATTGGCCATTCGGC
* *
61054520 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
61054567 CTTACCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61054616 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
61054663 CTTATCTCATATATGCA-TGTTCACGTTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
61054710 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
61054757 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
61054806 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61054853 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
61054900 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
61054947 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
61054994 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61055043 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61055090 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
61055137 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
61055184 CTTATCACA-A-ATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACAC-T-TTCACATTCATCACATTGGCCATTCGGC
* *
61055231 CTTATCACATATATATACACTGTCACATTCATCACATTGGCCCTTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61055280 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61055327 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61055374 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61055423 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
61055470 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
61055497 TATTCAAATA
Statistics
Matches: 1041, Mismatches: 56, Indels: 60
0.90 0.05 0.05
Matches are distributed among these distances:
45 4 0.00
46 5 0.00
47 766 0.74
49 213 0.20
50 5 0.00
51 6 0.01
54 3 0.00
56 39 0.04
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:61054735 original size:190 final size:189
Alignment explanation
Indices: 61054323--61055496 Score: 1629
Period size: 190 Copynumber: 6.1 Consensus size: 189
61054313 CCCTTCGGGA
* * * *
61054323 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGACCTTATCACATATATACA
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
* **
61054387 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATACGCA-TGTTCACATTCATCACA
65 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACA
* * * *
61054451 TTGGCCATTCGGCTTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATATTGGCCAT
129 TCGGCCATTCGGCCTTATCACATATATACACTGTTCACATTCAT--CA-----C--ATTGGCCAT
61054515 TCGGC
185 TCGGC
* * *
61054520 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTACCACATATATATAC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
*
61054585 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATGTACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
* * *
61054650 TCGGCCATTCGGCCTTATCTCATATATGCA-TGTTCACGTTCATCACATTGGCCATTCGGC
129 TCGGCCATTCGGCCTTATCACATATATACACTGTTCACATTCATCACATTGGCCATTCGGC
* *
61054710 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
61054775 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
61054840 TCGGCCATTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
129 TCGGCCATTCGGCCTTATCACATATATACACTGTTCACATTCATCACATTGGCCATTCGGC
* * * *
61054900 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
61054964 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCAC
66 T-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
* * *
61055029 ATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTCAGC
128 ATCGGCCATTCGGCCTTATCACATATATACACTGTTCACATTCATCACATTGGCCATTCGGC
* * * *
61055090 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
61055154 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-A-ATACACATGTTCACATTCATCAC
66 T-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC-T-TTCACATTCATCAC
* *
61055217 ATTGGCCATTCGGCCTTATCACATATATATACACTG-TCACATTCATCACATTGGCCCTTCGGC
128 ATCGGCCATTCGGCCTTATCAC--ATATATACACTGTTCACATTCATCACATTGGCCATTCGGC
* *
61055280 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
* *
61055344 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
65 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
* * *
61055409 ATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
128 ATCGGCCATTCGGCCTTATCACATATATACACTGTTCACATTCATCACATTGGCCATTCGGC
61055470 CTTATCACATATATACACT-TTCACATT
1 CTTATCACATATATACA-TGTTCACATT
61055497 TATTCAAATA
Statistics
Matches: 909, Mismatches: 48, Indels: 47
0.91 0.05 0.05
Matches are distributed among these distances:
186 6 0.01
187 3 0.00
188 80 0.09
190 616 0.68
191 3 0.00
192 36 0.04
193 2 0.00
194 6 0.01
196 1 0.00
197 48 0.05
199 107 0.12
200 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (189 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTCGGCCTTATCACATATATACACTGTTCACATTCATCACATTGGCCATTCGGC
Found at i:61054849 original size:237 final size:237
Alignment explanation
Indices: 61054323--61055496 Score: 1795
Period size: 237 Copynumber: 4.9 Consensus size: 237
61054313 CCCTTCGGGA
* * * * *
61054323 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGACCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
*
61054388 TTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATACGCATGTTCACATTCATCACATT
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATT
* * * ** * *
61054453 GGCCATTCGGCTTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATATTGGCCAT-TC
131 GGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCAT-TCGGCCTTATC
* * *
61054517 GGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
195 --AC--AT-ATATATACAC-T-TTCACATTCATCACATTGGCCATTCGGC
* * *
61054567 CTTACCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATGTAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
* *
61054632 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCTCATATATGCATGTTCACGTTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
61054697 TTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
129 TTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
61054762 CACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
194 CACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61054806 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
61054870 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACAT
66 T-TTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACAT
61054935 TGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
130 TGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
61055000 ACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
195 ACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
61055043 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCAGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
61055107 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACAT
66 T-TTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACAT
*
61055172 TGGCCATTCGGCCTTATCACAAATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
130 TGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATC
* *
61055237 ACATATATATACACTGTCACATTCATCACATTGGCCCTTCGGC
195 ACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
61055280 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
* * * *
61055345 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT-TTCACATTCATCAC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCTC--ATATATGCA-TGTTCACATTCATCAC
* * * * * *
61055409 ATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTT
128 ATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTT
61055473 ATCAC--ATATATACACTTTCACATT
192 ATCACATATATATACACTTTCACATT
61055497 TATTCAAATA
Statistics
Matches: 876, Mismatches: 45, Indels: 25
0.93 0.05 0.03
Matches are distributed among these distances:
236 1 0.00
237 565 0.64
238 1 0.00
239 118 0.13
240 3 0.00
241 8 0.01
242 2 0.00
244 8 0.01
245 6 0.01
246 164 0.19
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (237 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATT
GGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
CATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:61055112 original size:25 final size:25
Alignment explanation
Indices: 61055084--61055159 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
61055074 ACATCGGCCA
61055084 TTCAGCCTTATCTCATATATGCATG
1 TTCAGCCTTATCTCATATATGCATG
* * *
61055109 TTCA-CATTCATCACAT-T-GGCCA--
1 TTCAGCCTT-ATCTCATATATG-CATG
*
61055131 TTCGGCCTTATCTCATATATGCATG
1 TTCAGCCTTATCTCATATATGCATG
61055156 TTCA
1 TTCA
61055160 CATTCATCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 9 0.25
23 7 0.19
24 7 0.19
25 13 0.36
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (25 bp):
TTCAGCCTTATCTCATATATGCATG
Found at i:61057011 original size:56 final size:56
Alignment explanation
Indices: 61056944--61057063 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
61056934 TATTAGCTTA
61056944 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
61057000 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
61057056 TTGCCCAT
1 TTGCCCAT
61057064 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:61058017 original size:18 final size:18
Alignment explanation
Indices: 61057994--61058029 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
61057984 ATTCTTCCAA
61057994 GAAGAATTCCAAAAGAAG
1 GAAGAATTCCAAAAGAAG
61058012 GAAGAATTCCAAAAGAAG
1 GAAGAATTCCAAAAGAAG
61058030 TACATCAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.22, T:0.11
Consensus pattern (18 bp):
GAAGAATTCCAAAAGAAG
Found at i:61063029 original size:37 final size:37
Alignment explanation
Indices: 61062979--61063057 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
61062969 TTATTACGAA
* * *
61062979 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
61063016 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
61063053 GTCTT
1 GTCTT
61063058 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:61063176 original size:47 final size:47
Alignment explanation
Indices: 61063098--61063322 Score: 308
Period size: 47 Copynumber: 4.7 Consensus size: 47
61063088 CCCTTCGGGA
* * * * * *
61063098 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61063145 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61063192 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61063239 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
61063288 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
61063323 AGAATCCTAA
Statistics
Matches: 161, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
46 1 0.01
47 115 0.71
49 45 0.28
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61063299 original size:96 final size:94
Alignment explanation
Indices: 61063098--61063322 Score: 317
Period size: 96 Copynumber: 2.4 Consensus size: 94
61063088 CCCTTCGGGA
* * * * *
61063098 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
61063163 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
61063192 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
*
61063257 ACTTTCACATTCATCACATCGGCCATTAGGT
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
61063288 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATCCATCACAT
61063323 AGAATCCTAA
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
94 47 0.41
95 1 0.01
96 68 0.59
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:61066923 original size:40 final size:40
Alignment explanation
Indices: 61066893--61067442 Score: 823
Period size: 40 Copynumber: 13.8 Consensus size: 40
61066883 AGCATGATTA
* * *
61066893 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
61066933 CTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAATG
1 CTCTTCG-GGACTTAGCCCGGATATATCACTAGCACGAATG
* *
61066973 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
61067013 CTCTTTGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
61067053 CTCTTCGAGACTTAGCCCAGATACATCACTAGCACAAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
61067093 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
61067133 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
61067173 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
61067213 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
** * *
61067253 CTCTTCGAAACTTAGCCCGAATATATCACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
61067293 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
61067333 CTCTTCGGGACTTAGCCCAGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
61067373 CTCCTCGGGACTTAGCCCGGATATATCACTGGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
61067413 CTCCTCGAGACTTAGCCCGGATATATCACT
1 CTCTTCGGGACTTAGCCCGGATATATCACT
61067443 CTCAATTCTC
Statistics
Matches: 466, Mismatches: 42, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.00
40 463 0.99
41 2 0.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:61068719 original size:37 final size:38
Alignment explanation
Indices: 61068661--61068738 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 38
61068651 TTACGAAGTC
* * *
61068661 TTACCCGGACATAATCTCCACACGAAGTTATCGGGT-T
1 TTACCCGGACAAAATCCCCACACGAAGTCATCGGGTCT
*
61068698 TTACCCGGACAAAATCCCCACACGTAGTCATCGGGTCT
1 TTACCCGGACAAAATCCCCACACGAAGTCATCGGGTCT
61068736 TTA
1 TTA
61068739 GAGCTCGGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 32 0.89
38 4 0.11
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (38 bp):
TTACCCGGACAAAATCCCCACACGAAGTCATCGGGTCT
Found at i:61069076 original size:49 final size:47
Alignment explanation
Indices: 61068855--61069126 Score: 393
Period size: 47 Copynumber: 5.7 Consensus size: 47
61068845 CCCTTCGAGA
* * * * * *
61068855 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61068902 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61068949 CTTATCACATATATACACTTTCACATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61068996 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61069043 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
61069092 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
61069127 AGAATCGTAA
Statistics
Matches: 206, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 160 0.78
49 45 0.22
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61074140 original size:46 final size:47
Alignment explanation
Indices: 61074084--61074259 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 47
61074074 TGGTTGAGCA
61074084 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
61074130 TCC-AAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61074175 CATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
61074223 -CCGGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61074260 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 9 0.08
46 57 0.53
47 26 0.24
48 5 0.05
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
TCCGAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61074240 original size:93 final size:93
Alignment explanation
Indices: 61074081--61074251 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
61074071 GGATGGTTGA
*
61074081 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAGCTCGTTGAGT
61074146 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
61074174 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-AAGCTCGTTGAG
61074238 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
61074252 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:61077433 original size:45 final size:45
Alignment explanation
Indices: 61077347--61077552 Score: 265
Period size: 45 Copynumber: 4.6 Consensus size: 45
61077337 TGGCATTTCA
* * * *
61077347 CCTGCTAGGCTCAAA-ACCC-AATA-TCATTTCACCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCAGCATCATAG
* * * *
61077390 CCTGCTAGGCTCGAAGGCCCGAATAGTATCTCACCAACATTATAC
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATCATAG
61077435 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATCATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATCATAG
* * * * *
61077480 CCTGCGAGGCTCAAAAGCACTAATAGTATCTCACCGGCATCATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATCATAG
61077525 CCTGCTAGGCTCAAAGGCCCGAATAGTA
1 CCTGCTAGGCTCAAAGGCCCGAATAGTA
61077553 CCATACTATA
Statistics
Matches: 141, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
43 14 0.10
44 3 0.02
45 123 0.87
46 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATCATAG
Done.