Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 194 of 295
Found at i:61917625 original size:29 final size:29
Alignment explanation
Indices: 61917590--61917653 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
61917580 GCCTAACGGG
* *
61917590 CCATATAAATGTGATTTGGTCCCAATGGA
1 CCATATAAAGGTGATTTGGGCCCAATGGA
* * *
61917619 CCATATACAGGTGATTTGGGCCTAATGGG
1 CCATATAAAGGTGATTTGGGCCCAATGGA
61917648 CCATAT
1 CCATAT
61917654 GAATATTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (29 bp):
CCATATAAAGGTGATTTGGGCCCAATGGA
Found at i:61921998 original size:16 final size:16
Alignment explanation
Indices: 61921977--61922019 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
61921967 AACATTATTT
*
61921977 AGGCTCTGTGTCTAGC
1 AGGCTCTGTGCCTAGC
61921993 AGGCTCTGTGCCTAGC
1 AGGCTCTGTGCCTAGC
*
61922009 AGGCTTTGTGC
1 AGGCTCTGTGC
61922020 TGGTGATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.12, C:0.26, G:0.33, T:0.30
Consensus pattern (16 bp):
AGGCTCTGTGCCTAGC
Found at i:61922053 original size:38 final size:39
Alignment explanation
Indices: 61921992--61922092 Score: 141
Period size: 38 Copynumber: 2.6 Consensus size: 39
61921982 CTGTGTCTAG
* * *
61921992 CAGGCTCTGTGCCTAGCAGGCTTTGTGCTGGTGATAT-T
1 CAGGCTTTGTGCCTAGCAGGCTTTGTGCCGATGATATAT
* *
61922030 CGGGCTTTGTGCCTAGCAAGCTTTGTGCCGATGATATAT
1 CAGGCTTTGTGCCTAGCAGGCTTTGTGCCGATGATATAT
*
61922069 CAGGCTTAGTGCCTAGCAGGCTTT
1 CAGGCTTTGTGCCTAGCAGGCTTT
61922093 ATGTCGGTGT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
38 32 0.59
39 22 0.41
ACGTcount: A:0.16, C:0.22, G:0.30, T:0.33
Consensus pattern (39 bp):
CAGGCTTTGTGCCTAGCAGGCTTTGTGCCGATGATATAT
Found at i:61923146 original size:18 final size:18
Alignment explanation
Indices: 61923123--61923160 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
61923113 ATGAAAGGTG
*
61923123 TTAAGTACATGTA-TATGT
1 TTAAGTAAAT-TAGTATGT
61923141 TTAAGTAAATTAGTATGT
1 TTAAGTAAATTAGTATGT
61923159 TT
1 TT
61923161 GCTTTTGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (18 bp):
TTAAGTAAATTAGTATGT
Found at i:61929961 original size:25 final size:25
Alignment explanation
Indices: 61929919--61929967 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
61929909 CTTTATTATT
* *
61929919 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
61929944 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
61929968 GGTCCTCTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:61930094 original size:20 final size:20
Alignment explanation
Indices: 61930066--61930103 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
61930056 CTAGGAACTA
61930066 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
61930086 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
61930104 TATATGTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:61935708 original size:46 final size:46
Alignment explanation
Indices: 61935611--61935745 Score: 152
Period size: 46 Copynumber: 2.9 Consensus size: 46
61935601 GGTGGTATGT
**
61935611 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAACCACATT-ATG--AA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCAT---CGGCATTGA-GACAA
* *
61935658 -AGCCAGTGTACGACATGTCTGGGACATTCATCGGCATTGAGACAA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACAA
* *
61935703 GAGCCAGTGTAAGACATGTCTTGGACATGCATCGGCGTTGAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA
61935746 TATGCAAGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
43 6 0.08
44 1 0.01
45 2 0.03
46 67 0.88
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACAA
Found at i:61936883 original size:43 final size:44
Alignment explanation
Indices: 61936791--61936884 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 44
61936781 ATATGCCTCC
* *
61936791 TCTGGCCATGGGCGTGTGCCTCAGCCGTGTGGAGGACACGGCCT
1 TCTGGCCATGGGCGTGTGCCTCAGCCGTATGGAGGACACGGACT
* * *
61936835 T-TGGCCATGGGTGTGTGCCTCCA-CCGTATGGAGGATAC-GATT
1 TCTGGCCATGGGCGTGTGCCT-CAGCCGTATGGAGGACACGGACT
61936877 TCTGGCCA
1 TCTGGCCA
61936885 CGAGCATATG
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
42 3 0.07
43 37 0.86
44 3 0.07
ACGTcount: A:0.14, C:0.27, G:0.35, T:0.24
Consensus pattern (44 bp):
TCTGGCCATGGGCGTGTGCCTCAGCCGTATGGAGGACACGGACT
Found at i:61936883 original size:109 final size:109
Alignment explanation
Indices: 61936688--61936898 Score: 325
Period size: 109 Copynumber: 1.9 Consensus size: 109
61936678 CGGGCAGAGA
*
61936688 CATGGCCGTGTGCCTCAGCCGTGTAGAGGACACAGCCTCTGGCCATGGGCGTGTGCCTCGACCGT
1 CATGGCCGTGTGCCTCAGCCGTGTAGAGGACACAGCCTCTGGCCATGGGCGTGTGCCTCCACCGT
* *
61936753 GTGGAGGACATGACTTTTGGCCACGAGCATATGCCTCCTCTGGC
66 ATGGAGGACACGACTTTTGGCCACGAGCATATGCCTCCTCTGGC
* * * * *
61936797 CATGGGCGTGTGCCTCAGCCGTGTGGAGGACACGGCCTTTGGCCATGGGTGTGTGCCTCCACCGT
1 CATGGCCGTGTGCCTCAGCCGTGTAGAGGACACAGCCTCTGGCCATGGGCGTGTGCCTCCACCGT
*
61936862 ATGGAGGATACGA-TTTCTGGCCACGAGCATATGCCTC
66 ATGGAGGACACGACTTT-TGGCCACGAGCATATGCCTC
61936899 GACCATGTAC
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
108 3 0.03
109 89 0.97
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.23
Consensus pattern (109 bp):
CATGGCCGTGTGCCTCAGCCGTGTAGAGGACACAGCCTCTGGCCATGGGCGTGTGCCTCCACCGT
ATGGAGGACACGACTTTTGGCCACGAGCATATGCCTCCTCTGGC
Found at i:61949513 original size:27 final size:27
Alignment explanation
Indices: 61949479--61949548 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
61949469 CTTCATTCAT
* *
61949479 GAAATAATTACATGAATTGGTTATATG
1 GAAATAATTATATGAATTGGTTAAATG
*
61949506 GATATAATTATATGAATTGGTTAAATG
1 GAAATAATTATATGAATTGGTTAAATG
61949533 GAAATAATTATATGAA
1 GAAATAATTATATGAA
61949549 ATGGAACATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.44, C:0.01, G:0.17, T:0.37
Consensus pattern (27 bp):
GAAATAATTATATGAATTGGTTAAATG
Found at i:61958140 original size:21 final size:22
Alignment explanation
Indices: 61958103--61958143 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
61958093 TTATTTGATA
*
61958103 TTTAAATTTATTTTTGAATTGT
1 TTTAAATTTATTATTGAATTGT
61958125 TTTAAA-TTATTATTGAATT
1 TTTAAATTTATTATTGAATT
61958144 CGTTAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (22 bp):
TTTAAATTTATTATTGAATTGT
Found at i:61965909 original size:23 final size:23
Alignment explanation
Indices: 61965839--61965910 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
61965829 TACCTCGTTA
*
61965839 ACAAATTTATTCATTTTTTATAC
1 ACAAATTTATTCATTTTTTATAT
* *
61965862 ACAAATTTATTCGGTTTTTTTTAT
1 ACAAATTTATTC-ATTTTTTATAT
*
61965886 A-AAATTTATTCATTCTTTTGTAT
1 ACAAATTTATTCATT-TTTTATAT
61965909 AC
1 AC
61965911 CTCACAGTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
22 2 0.05
23 30 0.73
24 9 0.22
ACGTcount: A:0.31, C:0.11, G:0.04, T:0.54
Consensus pattern (23 bp):
ACAAATTTATTCATTTTTTATAT
Found at i:61973020 original size:18 final size:18
Alignment explanation
Indices: 61972978--61973022 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
61972968 GAAAAATGAG
61972978 AATTTTT-AAAACACGAA
1 AATTTTTGAAAACACGAA
*
61972995 AA-TTTTGAAAATACGAA
1 AATTTTTGAAAACACGAA
61973012 AATTTTTGAAA
1 AATTTTTGAAA
61973023 CCTGAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 4 0.16
17 13 0.52
18 8 0.32
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:61973643 original size:15 final size:17
Alignment explanation
Indices: 61973623--61973654 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
61973613 TTAGGAAACG
61973623 TACATAA-A-AAATATA
1 TACATAATATAAATATA
61973638 TACATAATATAAATATA
1 TACATAATATAAATATA
61973655 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:61974196 original size:11 final size:11
Alignment explanation
Indices: 61974162--61974203 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
61974152 AAATCATTTT
61974162 GAAGAGAGAAA
1 GAAGAGAGAAA
* *
61974173 GAA-AAAAAAA
1 GAAGAGAGAAA
*
61974183 GAAGGGAGAAA
1 GAAGAGAGAAA
61974194 GAAGAGAGAA
1 GAAGAGAGAA
61974204 GGGAGAGGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:61974716 original size:19 final size:18
Alignment explanation
Indices: 61974664--61974715 Score: 95
Period size: 19 Copynumber: 2.8 Consensus size: 18
61974654 AGGGTTTCTT
61974664 GGTTTTTTTGGGGGGTTA
1 GGTTTTTTTGGGGGGTTA
61974682 GGTTTTTTTTGGGGGGTTA
1 GG-TTTTTTTGGGGGGTTA
61974701 GGTTTTTTTGGGGGG
1 GGTTTTTTTGGGGGG
61974716 GCTTAATGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.04, C:0.00, G:0.46, T:0.50
Consensus pattern (18 bp):
GGTTTTTTTGGGGGGTTA
Found at i:61975764 original size:72 final size:72
Alignment explanation
Indices: 61975547--61976239 Score: 1055
Period size: 72 Copynumber: 9.5 Consensus size: 72
61975537 GTGATCTGAA
* *
61975547 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAATTACCTCAGC
**
61975612 ATGTGAACCGAG
63 --GTGTCCCGAG
* * * *
61975624 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAGCG
**
61975689 TGTCTTGAG
64 TGTCCCGAG
** * *
61975698 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGCAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
61975763 TCCCGAG
66 TCCCGAG
* *
61975770 GCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTAGAAAACAGAAAGTGAAACTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTT-GAAAACAGAAATTGAAATTACCTCAGCGT
61975834 GTCCCGAG
65 GTCCCGAG
61975842 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
61975907 TCCCGAG
66 TCCCGAG
*
61975914 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
61975979 TCCCGAG
66 TCCCGAG
61975986 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
61976051 TCCCGAG
66 TCCCGAG
*
61976058 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAATTTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
61976123 TCCTGAG
66 TCCCGAG
** * * *
61976130 GCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTAACAACAGAAATTGAAAATTACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAA-AACAGAAATTG-AAATTACCTCAGC
*
61976195 GTGTCCTGAG
63 GTGTCCCGAG
61976205 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
61976240 TTTGAAAAAT
Statistics
Matches: 573, Mismatches: 38, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
71 5 0.01
72 398 0.69
73 11 0.02
74 47 0.08
75 50 0.09
76 22 0.04
77 40 0.07
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (72 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCCCGAG
Found at i:61975847 original size:144 final size:145
Alignment explanation
Indices: 61975542--61977079 Score: 1750
Period size: 144 Copynumber: 10.4 Consensus size: 145
61975532 AGTGTGTGAT
* *
61975542 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACC
** *
61975607 TCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAA
63 TCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAA
*
61975672 TTGAAAATACCTCAACGTGTC
125 TTGAAAATACCTCAGCGTGTC
* ** * * *
61975693 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGCAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* *
61975758 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTAGAAAACAGAAAGTGAAA
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAA
*
61975822 CTACCTCAGCGTGTC
131 ATACCTCAGCGTGTC
* *
61975837 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* *
61975902 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAAACAAAAATTGAAA
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAA
*
61975966 TTACCTCAGCGTGTC
131 ATACCTCAGCGTGTC
* *
61975981 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* *
61976046 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAATTTGAAA
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAA
*
61976110 TTACCTCAGCGTGTC
131 ATACCTCAGCGTGTC
** * *
61976125 CTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTAACAACAGAAATTGAAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA-AACAGAAATTG-AAATTACC
*
61976190 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAA
63 TCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-----TT------T-T---
* * *
61976255 TTGAAAAGCAGAAATTGAAATTACCTCAACCTG-C
112 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTC
*
61976289 ATTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCT
1 -CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAATTACCT
* * ** *
61976354 CAGCGTGTCCTGAGGCTCAACTTATTTCTCGTAATATGAGTTGATTTTTTGAAAAATAGATTGAA
64 CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTT------T---TTGAA
* * * *
61976419 ACACAAAAATTGACAATACCTCAGCATGCC
117 A-ACAGAAATTGAAAATACCTCAGCGTGTC
* * *
61976449 CCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTTA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* *
61976514 GCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACAAAAAT
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTG-AAAACAGAAAT
*
61976579 TGAAAATACCTCAGCATGTC
126 TGAAAATACCTCAGCGTGTC
* ** * *
61976599 TTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* ** * *
61976664 GCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAAAAATTGA
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAA-AACAGAAATTGA
61976729 AAATTACCTCAGCGTGTC
129 AAA-TACCTCAGCGTGTC
*
61976747 CTGAGGCTCAACTCACCTCTCGC-A-AT--G-TGA-----G----CAGAAATTGAAAATACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* * ** * * * *
61976798 ACTTGTCTTGAGGCTTAACTCACCTCTCGCAATATGACTT-AATTTTTGAAAA-ATAAATTGAAA
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAA
*
61976861 ATACCTCAGCGTGCC
131 ATACCTCAGCGTGTC
*
61976876 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAATTACCTC
*
61976941 AGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAA
65 AGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGAAA-ACAGAAA
*
61977006 TTGAAAATACCTCAACGTGTC
125 TTGAAAATACCTCAGCGTGTC
* * *
61977027 TTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTG-AAACATAAATT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATT
61977080 AAAACACAAA
Statistics
Matches: 1223, Mismatches: 107, Indels: 115
0.85 0.07 0.08
Matches are distributed among these distances:
129 36 0.03
130 12 0.01
131 4 0.00
132 7 0.01
133 2 0.00
134 55 0.04
138 1 0.00
139 1 0.00
143 3 0.00
144 362 0.30
145 6 0.00
146 83 0.07
147 75 0.06
148 53 0.04
149 17 0.01
150 138 0.11
151 90 0.07
152 6 0.00
153 1 0.00
154 1 0.00
158 58 0.05
159 75 0.06
160 8 0.01
161 1 0.00
162 1 0.00
163 48 0.04
164 25 0.02
165 54 0.04
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (145 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAA
ATACCTCAGCGTGTC
Found at i:61975932 original size:216 final size:216
Alignment explanation
Indices: 61975547--61977170 Score: 1767
Period size: 216 Copynumber: 7.2 Consensus size: 216
61975537 GTGATCTGAA
*
61975547 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACCTCAGC
** *
61975612 ATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAA
63 --GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAA
*
61975677 AATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAA
124 AATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAA
*
61975742 AATTGCAATTACCTCAGCGTGTCCCGAG
189 AATTGAAATTACCTCAGCGTGTCCCGAG
* * *
61975770 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGAAAACAGAAAGTGAAACTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
* *
61975835 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCT
66 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCT
** **
61975900 CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAA
131 CAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAA
61975965 ATTACCTCAGCGTGTCCCGAG
196 ATTACCTCAGCGTGTCCCGAG
*
61975986 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
* * *
61976051 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAATTTGAAATTACCT
66 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCT
* * * * *
61976116 CAGCGTGTCCTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTAACAACAGAAATTG
131 CAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAA-AACAAAAATTG
*
61976181 AAAATTACCTCAGCGTGTCCTGAG
194 -AAATTACCTCAGCGTGTCCCGAG
61976205 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTG-A------T------T-T---TTGAAAA-CAGAAAT
* * **
61976270 TGAAATTACCTCAACCTG-CATTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
48 TGAAATTACCTCAGCGTGTC-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-A
* * * *
61976334 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTTATTTCTCGTAATATGAGTTGAT
111 AACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA---G--
* * *
61976399 TTTTTGAAAAATAGATTGAAACACAAAAATTGACAA-TACCTCAGCATGCCCCGAG
171 ---TTG---AAT--TTTGAAA-ACAAAAATTGA-AATTACCTCAGCGTGTCCCGAG
* * *
61976454 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTTAGCATG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
61976519 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACAAAAATTGAAA
66 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTG-AAAACAGAAATTGAAA
* * *
61976584 ATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAGAA
125 ATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAA
*
61976649 ATTGAAATTACCTCAGCGTGTCCTGAG
190 ATTGAAATTACCTCAGCGTGTCCCGAG
** * *
61976676 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAAAAATTGAAAATTACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA-AACAGAAATTG-AAATTACCTCAG
*
61976741 CGTGTCCTGAGGCTCAACTCACCTCTCGC-A-AT--G-TGA-----G----CAGAAATTGAAAAT
62 CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAT
* * * ** * *
61976792 ACCTCAACTTGTCTTGAGGCTTAACTCACCTCTCGCAATATGACTT-AATTTTTGAAAA-ATAAA
127 ACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAAACAAAAA
*
61976855 TTGAAAATACCTCAGCGTG-CCCTGAG
191 TTGAAATTACCTCAGCGTGTCCC-GAG
*
61976881 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGT
*
61976946 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAA
65 GT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAA-ACAGAAATTGAA
* ** * *
61977011 AATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTGAAACATA
124 AATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTG-------
**
61977076 AATTAAAACACAAAAATTGATAA-TACCTCAGCGTACCCCGAG
181 -----AAA-ACAAAAATTGA-AATTACCTCAGCGTGTCCCGAG
* * *
61977118 GCTCAACTCACCTCTCGTAATATGAATTGATTTTTGAAAAACATAAATTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTGAAA
61977171 AATGGAAATC
Statistics
Matches: 1215, Mismatches: 94, Indels: 170
0.82 0.06 0.11
Matches are distributed among these distances:
202 17 0.01
203 16 0.01
204 27 0.02
205 56 0.05
206 63 0.05
208 1 0.00
209 3 0.00
211 1 0.00
216 271 0.22
217 7 0.01
218 47 0.04
219 51 0.04
220 22 0.02
221 13 0.01
222 110 0.09
223 42 0.03
224 9 0.01
225 14 0.01
226 38 0.03
228 3 0.00
231 55 0.05
232 9 0.01
233 2 0.00
235 4 0.00
236 69 0.06
237 134 0.11
238 62 0.05
241 1 0.00
242 1 0.00
246 3 0.00
248 2 0.00
249 47 0.04
250 15 0.01
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.29
Consensus pattern (216 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCT
CAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAA
ATTACCTCAGCGTGTCCCGAG
Found at i:61976348 original size:73 final size:73
Alignment explanation
Indices: 61976255--61976408 Score: 204
Period size: 73 Copynumber: 2.1 Consensus size: 73
61976245 AAAATATAAA
*
61976255 TTGAAAAGCAGAAATTGAAATTACCTCAACCTG-CATTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAATTACCTCAACCTGTC-CTGAGGCTCAACTCACCTCTCGCAATATG
61976319 AGTTGATTT
65 AGTTGATTT
* * * ** *
61976328 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTTATTTCTCGTAATATG
1 TTGA-AAAGCAGAAATTGAAATTACCTCAACCTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
61976392 AGTTGATTTT
65 AGTTGA-TTT
61976402 TTGAAAA
1 TTGAAAA
61976409 ATAGATTGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
73 60 0.85
74 11 0.15
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (73 bp):
TTGAAAAGCAGAAATTGAAATTACCTCAACCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:61976503 original size:86 final size:86
Alignment explanation
Indices: 61976339--61976505 Score: 212
Period size: 86 Copynumber: 1.9 Consensus size: 86
61976329 TGACAAACAG
* * * * ** **
61976339 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTTATTTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
* *
61976404 GAAAAATAGATTGAAACACAA
66 GAAAAAGAAATTGAAACACAA
61976425 AAATTGACAA-TACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTT
1 AAATTGA-AATTACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
61976488 TGAAAACAGAAATTGAAA
65 TGAAAA-AGAAATTGAAA
61976506 TTACCTTAGC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 10 0.14
86 57 0.83
87 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (86 bp):
AAATTGAAATTACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
GAAAAAGAAATTGAAACACAA
Found at i:61976547 original size:72 final size:73
Alignment explanation
Indices: 61976414--61976777 Score: 446
Period size: 72 Copynumber: 4.9 Consensus size: 73
61976404 GAAAAATAGA
* * *
61976414 TTGAAACACAAAAATTGACAA-TACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATG
1 TTGAAA-ACAAAAATTGA-AATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
61976478 AGTTGA-TTT
64 AGTTGATTTT
* * *
61976487 TTGAAAACAGAAATTGAAATTACCTTAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
61976552 TTGATTTTTTTT
66 TTGA----TTTT
* * ** *
61976564 TTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTG-AAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
61976629 GTTGA-ATT
65 GTTGATTTT
* * **
61976637 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
61976702 TTGATTTTT
66 TTGA-TTTT
* * *
61976711 TTTAACAACAAAAATTGAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTG
1 TTGAA-AACAAAAATTG-AAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
61976776 AG
64 AG
61976778 CAGAAATTGA
Statistics
Matches: 256, Mismatches: 24, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
71 2 0.01
72 117 0.46
73 11 0.04
74 6 0.02
75 10 0.04
76 46 0.18
77 6 0.02
78 58 0.23
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (73 bp):
TTGAAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:61976897 original size:71 final size:73
Alignment explanation
Indices: 61976781--61977083 Score: 400
Period size: 71 Copynumber: 4.1 Consensus size: 73
61976771 ATGTGAGCAG
* * * *
61976781 AAATTGAAAATACCTCAACTTGTCTTGAGGCTTAACTCACCTCTCGCAATATGACTT-AATTTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
61976845 GAAAA-AT
66 GAAAACAT
* *
61976852 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
61976916 GACAAACAT
66 GA-AAACAT
* * *
61976925 AAATTGAAATTACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--AT
*
61976990 TTTTGAAAGACAG
62 TTTTGAAA-ACAT
* * *
61977003 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
61977068 G-AAACAT
66 GAAAACAT
61977075 AAATT-AAAA
1 AAATTGAAAA
61977084 CACAAAAATT
Statistics
Matches: 208, Mismatches: 15, Indels: 18
0.86 0.06 0.07
Matches are distributed among these distances:
71 63 0.30
72 11 0.05
73 25 0.12
74 7 0.03
75 35 0.17
76 34 0.16
77 2 0.01
78 31 0.15
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (73 bp):
AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
GAAAACAT
Found at i:61988960 original size:18 final size:18
Alignment explanation
Indices: 61988918--61988962 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
61988908 GAAAAATGAG
61988918 AATTTTT-AAAACACGAA
1 AATTTTTGAAAACACGAA
61988935 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
61988952 AATTTTTGAAA
1 AATTTTTGAAA
61988963 CCTGAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.15
17 14 0.54
18 8 0.31
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:61989584 original size:15 final size:17
Alignment explanation
Indices: 61989564--61989595 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
61989554 ATTAGGAACG
61989564 TACATAA-A-AAATATA
1 TACATAATATAAATATA
61989579 TACATAATATAAATATA
1 TACATAATATAAATATA
61989596 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:61990630 original size:22 final size:20
Alignment explanation
Indices: 61990605--61990650 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
61990595 GGTTTCTTGG
**
61990605 TTTTTTTTTGGGGGTTAGGT
1 TTTTTTTTTTTGGGTTAGGT
61990625 TTTTTTTTTTTGGGTTAGGT
1 TTTTTTTTTTTGGGTTAGGT
61990645 TTTTTT
1 TTTTTT
61990651 GGGGGGCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.04, C:0.00, G:0.26, T:0.70
Consensus pattern (20 bp):
TTTTTTTTTTTGGGTTAGGT
Found at i:61992138 original size:27 final size:27
Alignment explanation
Indices: 61992108--61992285 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
61992098 ATATTGAGTC
* * * *
61992108 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
61992135 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
61992162 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* ** * *
61992190 TGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
61992217 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
61992244 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
61992271 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61992286 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:61992247 original size:82 final size:81
Alignment explanation
Indices: 61992129--61992284 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
61992119 TGCTATATAA
* * *
61992129 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTTGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
61992194 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
61992211 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
61992275 CACTTAGTGC
65 CACTTAGTGC
61992285 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62000199 original size:25 final size:28
Alignment explanation
Indices: 62000168--62000230 Score: 96
Period size: 25 Copynumber: 2.4 Consensus size: 28
62000158 TAATCACTCG
*
62000168 CACTTAGTGCTACGTA-TCAAA-TCG-A
1 CACTTAGTGCTACATAGTCAAACTCGCA
62000193 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAACTCGCA
62000221 CACTTAGTGC
1 CACTTAGTGC
62000231 CGCATGTCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 15 0.44
26 5 0.15
27 3 0.09
28 11 0.32
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (28 bp):
CACTTAGTGCTACATAGTCAAACTCGCA
Found at i:62011831 original size:38 final size:39
Alignment explanation
Indices: 62011789--62011984 Score: 191
Period size: 38 Copynumber: 5.1 Consensus size: 39
62011779 CGGAGCTAAG
*
62011789 CCCGAAGGCA-TGTGCTAGTGA-CTATATCCGGCTAAAGT
1 CCCGAAGGCATTGTGCGAGT-ACCTATATCCGGCTAAAGT
62011827 CCCGAAGGCA-TGTGCGAAGTACCTATATTCCGGCT-AAGT
1 CCCGAAGGCATTGTGCG-AGTACCTATA-TCCGGCTAAAGT
*
62011866 -CCGAAGGCATTTGTTGCGATTA-CTATATCCCGGC--AA-T
1 CCCGAAGGCA-TTG-TGCGAGTACCTATAT-CCGGCTAAAGT
62011903 CCCGAAGGCATTTGTGCGAGTACCTATA-CCGGGCTAAGAGT
1 CCCGAAGGCA-TTGTGCGAGTACCTATATCC-GGCTAA-AGT
* *
62011944 -CCGAAGGCATTGTGCGAGTAGCTAAATCCGGCTAAA-T
1 CCCGAAGGCATTGTGCGAGTACCTATATCCGGCTAAAGT
62011981 CCCG
1 CCCG
62011985 GAAGATTGGG
Statistics
Matches: 137, Mismatches: 5, Indels: 32
0.79 0.03 0.18
Matches are distributed among these distances:
36 2 0.01
37 12 0.09
38 50 0.36
39 44 0.32
40 24 0.18
41 5 0.04
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (39 bp):
CCCGAAGGCATTGTGCGAGTACCTATATCCGGCTAAAGT
Found at i:62011951 original size:78 final size:76
Alignment explanation
Indices: 62011809--62011984 Score: 195
Period size: 78 Copynumber: 2.3 Consensus size: 76
62011799 TGTGCTAGTG
62011809 ACTATATCCGGCTAAAGTCCCGAAGGCATGTGCGAAGTACCTATATTCCGGCTAAGTCCGAAGGC
1 ACTATATCCGGC-AAAGTCCCGAAGGCATGTGCGAAGTACCTATA-TCCGGCTAAGTCCGAAGGC
62011874 ATTTGTTGCGATT
64 ATTTGTTGCGATT
62011887 ACTATATCCCGGC-AA-TCCCGAAGGCATTTGTGCG-AGTACCTATA-CCGGGCTAAGAGTCCGA
1 ACTATAT-CCGGCAAAGTCCCGAAGGCA--TGTGCGAAGTACCTATATCC-GGCT-A-AGTCCGA
*
62011948 AGGCA-TTG-TGCGAGT
60 AGGCATTTGTTGCGATT
*
62011963 AGCTAAATCCGGCTAAA-TCCCG
1 A-CTATATCCGGC-AAAGTCCCG
62011985 GAAGATTGGG
Statistics
Matches: 87, Mismatches: 2, Indels: 18
0.81 0.02 0.17
Matches are distributed among these distances:
75 2 0.02
76 27 0.31
77 21 0.24
78 32 0.37
79 5 0.06
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (76 bp):
ACTATATCCGGCAAAGTCCCGAAGGCATGTGCGAAGTACCTATATCCGGCTAAGTCCGAAGGCAT
TTGTTGCGATT
Found at i:62019481 original size:39 final size:39
Alignment explanation
Indices: 62019422--62019609 Score: 229
Period size: 39 Copynumber: 4.8 Consensus size: 39
62019412 TGGATGCTAA
* * *
62019422 CGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGATTAATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
*
62019461 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
* *
62019500 CCGGGCTAA-TCCCAAAGGCATTTGTGCGAGTTACTAATT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
* *
62019539 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-T
* * *
62019579 CCGGCTAAGACCCGAAGGC-CTTGTGCGAGTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTG
62019610 GTTATATCCG
Statistics
Matches: 133, Mismatches: 13, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
38 10 0.08
39 92 0.69
40 31 0.23
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
Found at i:62019582 original size:79 final size:79
Alignment explanation
Indices: 62019422--62019609 Score: 240
Period size: 79 Copynumber: 2.4 Consensus size: 79
62019412 TGGATGCTAA
* * *
62019422 CGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGATTAATTCGGGCTAAGTCCCGAAGGCATTTGTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCGGGCTAAGTCCCGAAGGCATTTGTG
* *
62019487 CGAGTTACTAATTC
66 CGAGTGACCAATTC
* *
62019501 CGGGCTAA-TCCCAAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT-CGGGCTAAGTCCCGAAGGCATTTGT
*
62019565 GCTAGTGACC-ATATC
65 GCGAGTGACCAAT-TC
* *
62019580 C-GGCTAAGACCCGAAGGC-CTTGTGCGAGTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTG
62019610 GTTATATCCG
Statistics
Matches: 94, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
78 44 0.47
79 50 0.53
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTGACCAATTC
Found at i:62019617 original size:38 final size:39
Alignment explanation
Indices: 62019427--62019633 Score: 129
Period size: 39 Copynumber: 5.3 Consensus size: 39
62019417 GCTAACGGGT
* * * ** *
62019427 TAAGTCCCGAAGGCATTTGTGCTAGTGATTA-ATTCGGGC
1 TAAGACCCGAAGGCACTTGTGCGAGTGACCATA-TCCGGC
* * * *
62019466 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGACCCGAAGGCACTTGTGCGAGTGACCATA-TCC-GGC
* * * * *
62019506 TAA-TCCCAAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGACCCGAAGGCACTTGTGCGAGTGACCATA-TCC-GGC
* * *
62019545 TAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCCGGC
1 TAAGACCCGAAGGCACTTGTGCGAGTGACCATATCCGGC
***
62019584 TAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCCGGC
1 TAAGACCCGAAGGCACTTGTGCGAGTGACCATATCCGGC
62019622 TAA-ATCCCGAAG
1 TAAGA-CCCGAAG
62019634 ATAATTGGGT
Statistics
Matches: 149, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
37 1 0.01
38 29 0.19
39 86 0.58
40 32 0.21
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (39 bp):
TAAGACCCGAAGGCACTTGTGCGAGTGACCATATCCGGC
Found at i:62027621 original size:40 final size:41
Alignment explanation
Indices: 62027521--62027705 Score: 238
Period size: 40 Copynumber: 4.7 Consensus size: 41
62027511 CTAACGGGGT
* * *
62027521 TAAGTCCCGAAGACATTTGTGCTAGTGATTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
62027561 TAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
62027600 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* * *
62027640 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* *
62027680 TAAGACCCGAAGGC-CTTGTGCGAGTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTG
62027706 GTTATTACAG
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
39 47 0.36
40 85 0.64
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
Found at i:62034602 original size:20 final size:20
Alignment explanation
Indices: 62034577--62034624 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
62034567 GGTTTTGATA
*
62034577 TACATGAT-TGATATGATGTG
1 TACATGATATG-TATGATATG
62034597 TACATGATATGTATGATATG
1 TACATGATATGTATGATATG
*
62034617 CACATGAT
1 TACATGAT
62034625 GTATTCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (20 bp):
TACATGATATGTATGATATG
Found at i:62034763 original size:24 final size:24
Alignment explanation
Indices: 62034672--62034779 Score: 137
Period size: 25 Copynumber: 4.4 Consensus size: 24
62034662 AGGAAGTGCA
* *
62034672 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
62034696 GAAAAGGGCTTTTGCCCCAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
62034722 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
62034747 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
62034770 AAAAGAGGCT
1 AAAAG-GGCT
62034780 AAGCCTCCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
23 9 0.12
24 14 0.18
25 40 0.53
26 13 0.17
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:62035025 original size:31 final size:31
Alignment explanation
Indices: 62034987--62035050 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
62034977 CCATTATAGT
62034987 AAAGGCTTCAGCCCAATAATATGAAATATGA
1 AAAGGCTTCAGCCCAATAATATGAAATATGA
* * **
62035018 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAATAATATGAAATATGA
62035049 AA
1 AA
62035051 CATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAATAATATGAAATATGA
Found at i:62040156 original size:18 final size:18
Alignment explanation
Indices: 62040133--62040172 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
62040123 TCAAGAAAGA
62040133 GTTGCGTACCTAGTATCC
1 GTTGCGTACCTAGTATCC
62040151 GTTGCGTACCTAGTATCC
1 GTTGCGTACCTAGTATCC
62040169 -TTGC
1 GTTGC
62040173 AGGTGTGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.15, C:0.28, G:0.23, T:0.35
Consensus pattern (18 bp):
GTTGCGTACCTAGTATCC
Found at i:62040602 original size:27 final size:27
Alignment explanation
Indices: 62040532--62040698 Score: 163
Period size: 27 Copynumber: 6.2 Consensus size: 27
62040522 TTTACCTAGA
* * * *
62040532 GCCCTTATGTGATAAAATGACTATATT
1 GCCCTTATATGGTAAAATGACTGTTTT
* * * *
62040559 ACCCTTATGTTGAAAAATGACTGTTTT
1 GCCCTTATATGGTAAAATGACTGTTTT
* *
62040586 GCCTTTGTATGGTAAAATGACTGTTTT
1 GCCCTTATATGGTAAAATGACTGTTTT
* *
62040613 ACCCTTATATGGTAAAATAACTGTTTT
1 GCCCTTATATGGTAAAATGACTGTTTT
* * * *
62040640 GCCTTTATGTGGTGAAATGATTGTTTT
1 GCCCTTATATGGTAAAATGACTGTTTT
* * *
62040667 TCCCTTATATGGTAAGATTACTGTTTT
1 GCCCTTATATGGTAAAATGACTGTTTT
62040694 GCCCT
1 GCCCT
62040699 ATGTGATGTA
Statistics
Matches: 110, Mismatches: 30, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (27 bp):
GCCCTTATATGGTAAAATGACTGTTTT
Found at i:62040630 original size:54 final size:54
Alignment explanation
Indices: 62040544--62040696 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 54
62040534 CCTTATGTGA
* * * * * * *
62040544 TAAAATGACTATATTACCCTTATGTTGAAAAATGACTGTTTTGCCTTTGTATGG
1 TAAAATGACTGTTTTACCCTTATATGGTAAAATAACTGTTTTGCCTTTATATGG
*
62040598 TAAAATGACTGTTTTACCCTTATATGGTAAAATAACTGTTTTGCCTTTATGTGG
1 TAAAATGACTGTTTTACCCTTATATGGTAAAATAACTGTTTTGCCTTTATATGG
* * * * *
62040652 TGAAATGATTGTTTTTCCCTTATATGGTAAGATTACTGTTTTGCC
1 TAAAATGACTGTTTTACCCTTATATGGTAAAATAACTGTTTTGCC
62040697 CTATGTGATG
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 86 1.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (54 bp):
TAAAATGACTGTTTTACCCTTATATGGTAAAATAACTGTTTTGCCTTTATATGG
Found at i:62040919 original size:45 final size:45
Alignment explanation
Indices: 62040853--62040971 Score: 195
Period size: 45 Copynumber: 2.7 Consensus size: 45
62040843 AGGAAGTGTT
*
62040853 TTATACTAGCAGCTCTGCTACAAATCACTGATGGCTCTAAGCCTA
1 TTATACTGGCAGCTCTGCTACAAATCACTGATGGCTCTAAGCCTA
* *
62040898 TTATACTGGCAACTCTACTACAAATCACTGATGGCTCTAAGCCTA
1 TTATACTGGCAGCTCTGCTACAAATCACTGATGGCTCTAAGCCTA
*
62040943 TTATACTGGCAGCTCTGCTGCAAAT-ACTG
1 TTATACTGGCAGCTCTGCTACAAATCACTG
62040972 TTTAGTGCTA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
44 4 0.06
45 64 0.94
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (45 bp):
TTATACTGGCAGCTCTGCTACAAATCACTGATGGCTCTAAGCCTA
Found at i:62042503 original size:24 final size:24
Alignment explanation
Indices: 62042451--62042503 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
62042441 GAGTGTTATG
* *
62042451 TGGAGGAAATCAAGGAAAGGATGG
1 TGGAGAAAATCAAGGAAAGGATGA
* * *
62042475 GGGAGAAAATCAAGGAGAGGATTA
1 TGGAGAAAATCAAGGAAAGGATGA
62042499 TGGAG
1 TGGAG
62042504 GGATTTTAGG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.42, C:0.04, G:0.42, T:0.13
Consensus pattern (24 bp):
TGGAGAAAATCAAGGAAAGGATGA
Found at i:62053319 original size:27 final size:27
Alignment explanation
Indices: 62053289--62053466 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 27
62053279 ATATTGAGCC
* *
62053289 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
62053316 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
62053343 CGCACACTTAGTCCTACATAGTAAAACT
1 CGCACACTTAGTGCTACATAAT-CAACT
** ** *
62053371 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
62053398 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
62053425 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
62053452 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
62053467 GTACAATTTA
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
27 101 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:62053428 original size:82 final size:81
Alignment explanation
Indices: 62053310--62053465 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
62053300 TGCTATATAA
* *
62053310 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTCCTACATAGTAAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTCCAACATAGTAAAA-TCGCA
62053375 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** * **
62053392 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTCCAACATAGTAAAATCGCA
*
62053456 CCCTTAGTGC
65 CACTTAGTGC
62053466 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTCCAACATAGTAAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62061159 original size:27 final size:27
Alignment explanation
Indices: 62061129--62061306 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
62061119 ATACTGAGCC
* *
62061129 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
62061156 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
62061183 CGCACACTTAGTGCTACATAGTAAAACT
1 CGCACACTTAGTGCTACATAAT-CAACT
** ** *
62061211 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
62061238 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
62061265 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
62061292 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
62061307 GTACAATTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:62061268 original size:82 final size:81
Alignment explanation
Indices: 62061150--62061305 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
62061140 TGCTATATAA
* *
62061150 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTAAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAAAA-TCGCA
62061215 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** **
62061232 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAAAATCGCA
*
62061296 CCCTTAGTGC
65 CACTTAGTGC
62061306 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.77
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62067063 original size:18 final size:18
Alignment explanation
Indices: 62067040--62067076 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
62067030 AATTTTTGTG
62067040 TAAAATAAATGTAAAATA
1 TAAAATAAATGTAAAATA
62067058 TAAAATAAATGTAAAATA
1 TAAAATAAATGTAAAATA
62067076 T
1 T
62067077 TCGGCCAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (18 bp):
TAAAATAAATGTAAAATA
Found at i:62070087 original size:33 final size:33
Alignment explanation
Indices: 62070049--62070119 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
62070039 CAATCAATGC
62070049 ATAAATGCCTATGTATTAATTCAAGACATATCA
1 ATAAATGCCTATGTATTAATTCAAGACATATCA
*
62070082 ATAAATGCCTATGTTTTAATTCAAGACATATCA
1 ATAAATGCCTATGTATTAATTCAAGACATATCA
62070115 ATAAA
1 ATAAA
62070120 AATCATAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (33 bp):
ATAAATGCCTATGTATTAATTCAAGACATATCA
Found at i:62076123 original size:40 final size:40
Alignment explanation
Indices: 62075900--62076124 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
62075890 TCGAATGATG
* * * *
62075900 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
62075940 TCCGGACTAAG-CTCCGAAGGCATTTCTGCGAGATACTAAT
1 TCCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTAAA
*
62075980 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
62076019 TCCGAGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
62076059 TCTGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTACTATGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62076100 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62076125 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 33 0.21
40 118 0.75
41 7 0.04
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62084255 original size:40 final size:40
Alignment explanation
Indices: 62084024--62084248 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
62084014 TCGAATGATG
* * * *
62084024 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
62084064 TCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62084104 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
62084143 TCCCGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
62084183 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62084224 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62084249 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.21
40 116 0.73
41 9 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62084255 original size:80 final size:78
Alignment explanation
Indices: 62084077--62084271 Score: 223
Period size: 80 Copynumber: 2.5 Consensus size: 78
62084067 GAACTAAGAT
* * *
62084077 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGCCCAAAGGCATTGGTGCGAGTTACTAA
*
62084142 ATCCCGGTTAAGTC
65 ATCCCGGCTAAGTC
* *
62084156 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAG-CCCAAAGGCATTGGTGCGAGTTACTA
* * *
62084221 TGA-CCGGGCTATGTC
64 -AATCCCGGCTAAGTC
** *
62084236 CCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAA
1 CCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAA
62084272 ATTCCGAAGG
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 42 0.42
80 56 0.57
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGCCCAAAGGCATTGGTGCGAGTTACTAAA
TCCCGGCTAAGTC
Found at i:62087154 original size:47 final size:47
Alignment explanation
Indices: 62087029--62087240 Score: 289
Period size: 47 Copynumber: 4.5 Consensus size: 47
62087019 TCGGCCAAGA
*
62087029 GAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGT
* *
62087076 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGT
* **
62087125 GAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGT
** * * * *
62087172 GAAAGTGTATATATGTGATGGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGT
*
62087219 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
62087241 TCCCGAAGGG
Statistics
Matches: 147, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
47 103 0.70
49 44 0.30
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGT
Found at i:62094450 original size:31 final size:31
Alignment explanation
Indices: 62094415--62094477 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
62094405 CAAAAAAGTC
* *
62094415 TGAAATACTTGACGTCACAGAAAGATTTGAA
1 TGAAATACTTAACGTAACAGAAAGATTTGAA
62094446 TGAAATACTTAACGTAACAGAAAGATTTGAA
1 TGAAATACTTAACGTAACAGAAAGATTTGAA
62094477 T
1 T
62094478 TTGAGATAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.27
Consensus pattern (31 bp):
TGAAATACTTAACGTAACAGAAAGATTTGAA
Found at i:62096819 original size:20 final size:20
Alignment explanation
Indices: 62096794--62096832 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
62096784 AGGGACTAAA
* *
62096794 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTATAAAATTTG
62096814 ATGAAAAATTATAAAATTT
1 ATGAAAAATTATAAAATTT
62096833 TAAGAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:62101035 original size:48 final size:48
Alignment explanation
Indices: 62100980--62101480 Score: 804
Period size: 48 Copynumber: 10.4 Consensus size: 48
62100970 TATATATGTG
*
62100980 TGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62101028 TGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATAAGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62101076 TGCGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * * *
62101124 TGAGGTAAATCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
62101172 CGTGGTAAACCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62101220 CGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
62101268 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATTAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62101316 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
62101364 CGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62101412 CGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
62101460 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
62101481 GTGATTCGGC
Statistics
Matches: 421, Mismatches: 32, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 421 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:62101703 original size:37 final size:37
Alignment explanation
Indices: 62101653--62101755 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
62101643 GGAAATATAT
62101653 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62101690 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62101727 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
62101756 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:62103085 original size:40 final size:40
Alignment explanation
Indices: 62103037--62103267 Score: 358
Period size: 40 Copynumber: 5.8 Consensus size: 40
62103027 AGTTATATAG
62103037 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
62103077 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
62103117 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * *
62103157 CTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * * *
62103197 CCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* *
62103237 CCGGGCTAA-ACCACGAAG-GCATTTGTGCTGG
1 CCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
62103268 AATTATGAGG
Statistics
Matches: 180, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.07
40 167 0.93
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
Found at i:62103733 original size:17 final size:17
Alignment explanation
Indices: 62103711--62103750 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
62103701 TTATGTGCTA
62103711 AGAATAAATCTCATGCC
1 AGAATAAATCTCATGCC
62103728 AGAATAAATCTCATGCC
1 AGAATAAATCTCATGCC
62103745 AGAATA
1 AGAATA
62103751 TTATATTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.45, C:0.20, G:0.12, T:0.23
Consensus pattern (17 bp):
AGAATAAATCTCATGCC
Found at i:62106877 original size:48 final size:48
Alignment explanation
Indices: 62106822--62108201 Score: 1962
Period size: 48 Copynumber: 29.4 Consensus size: 48
62106812 TATATATGTG
* *
62106822 TGTGGTAAAGCTGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
62106870 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
62106918 TGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * * *
62106966 TGCGGTAAAGCGGAATGGCTAATATGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62107014 TGGGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62107062 TGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * * *
62107110 TGAGGTAAAGCCGAATGGCCAGTGTGAAGTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62107158 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
62107206 CGTGGTAAAGCTGAATGGCTAGTGTGAAATATG--T---A-ATG--TA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
62107246 TG-GGT-AA-CCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
62107291 GGTGGTAAAGCCGAACGGCTAATGCGAAATATGTATGAGATATG--TA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
62107337 -----T-AAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
62107379 TGTGGTAAAACTGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
62107427 TGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * * *
62107475 TGCGGTAAAGCTGAATGCCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
62107523 TGGGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
62107571 TGAGGTAAAGCCGAATGGCTAGTGTGAAGTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62107619 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
62107667 CGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62107715 CGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
62107763 GGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAG----G--CA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
62107805 TGT-AT-AAGCCGAATAGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62107851 TGTGGTAAAACCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
62107899 TGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
62107947 TGCGGTAAAGCCG-A-----AATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
62107989 TGCGGTAAAGCTGAATGGCTAATGTGAAATATGTTTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62108037 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62108085 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
62108133 CGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
62108181 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
62108202 GTGATTCGGC
Statistics
Matches: 1220, Mismatches: 79, Indels: 66
0.89 0.06 0.05
Matches are distributed among these distances:
37 20 0.02
38 2 0.00
39 4 0.00
40 70 0.06
41 2 0.00
42 49 0.04
43 5 0.00
44 2 0.00
45 3 0.00
46 10 0.01
47 5 0.00
48 1048 0.86
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:62108428 original size:37 final size:37
Alignment explanation
Indices: 62108374--62108476 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
62108364 GGAAATATAT
*
62108374 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62108411 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62108448 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
62108477 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:62114756 original size:46 final size:46
Alignment explanation
Indices: 62114703--62114875 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
62114693 TGGTTGAGCA
*
62114703 TCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
62114749 TCTGAACTCGTTGAGTTGAGTCCTAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
62114794 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62114842 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62114876 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62114859 original size:93 final size:93
Alignment explanation
Indices: 62114700--62114870 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
62114690 GGATGGTTGA
* * *
62114700 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
*
62114765 TGAGTCCTAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
62114793 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
62114858 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62114871 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:62117735 original size:47 final size:47
Alignment explanation
Indices: 62117677--62119648 Score: 3404
Period size: 47 Copynumber: 41.4 Consensus size: 47
62117667 CAGCCAAGAT
62117677 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62117724 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62117771 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62117820 AGTGTATATATGCGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62117867 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62117916 GGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62117963 AGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118012 GGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118059 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118106 GGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62118153 GGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118202 AGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118249 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118296 GGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118343 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118392 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118439 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118488 AGTGTAAATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGT--ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118537 AGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118584 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118631 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118680 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118729 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62118776 AGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118823 AGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118872 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118921 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118968 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62119015 GGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62119062 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62119109 GGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62119156 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62119205 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62119252 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62119299 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62119348 AGTGTATATATGTGATAAGGCCTAATTGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62119395 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62119442 AGTGTATATATGTGATAAGGCCTAATTGTCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62119489 GGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62119536 GGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
62119583 AGTGTGTATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62119630 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
62119649 TCCCGAAGGG
Statistics
Matches: 1847, Mismatches: 56, Indels: 44
0.95 0.03 0.02
Matches are distributed among these distances:
47 1243 0.67
49 604 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:62117788 original size:96 final size:95
Alignment explanation
Indices: 62117677--62119648 Score: 3401
Period size: 96 Copynumber: 20.7 Consensus size: 95
62117667 CAGCCAAGAT
62117677 AGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62117741 AGGCCTAATGGCCGATGTGATGAATGTGAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAA
*
62117771 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCGAT
1 AGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
62117836 AAGGCCTAATGGCCGATGTGATGAATGTGAA
65 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62117867 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGAT
1 AGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
62117932 AAGGCCTAATGGCCGATGTGATGAATGTGAA
65 AAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62117963 AGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGAT
1 AGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
62118028 AAGGCCTAATGGCCGATGTGATGAATGTGAA
65 AAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118059 AGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62118123 AGGCCTAATGGCCGATGTGATGAATGTGAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
62118153 GGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATATGAT
1 AGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
62118218 AAGGCCTAATGGCCGATGTGATGAATGTGAA
65 AAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118249 AGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62118313 AGGCCTAATGGCCGATGTGATGAATGTGAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAA
62118343 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
62118408 AAGGCCTAATGGCCGATGTGATGAATGTGAA
65 AAGGCCTAATGGCCGATGTGATGAATGTGAA
62118439 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATATATGTG
1 AGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT--ATATATGTG
62118504 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118537 AGTG-TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62118601 AGGCCTAATGGCCGATGTGATGAATGTGAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAA
62118631 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 AGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
62118696 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62118729 AGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
62118793 AGGCCTAGTGGCCGATGTGATGAATGTCAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118823 AGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATATGTG
1 AGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
62118888 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62118921 AGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62118985 AGGCCTAATGGCCGATGTGATGAATGTGAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62119015 GGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62119079 AGGCCTAATGGCCGATGTGATGAATGTGAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62119109 GGTG-TATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
62119173 TAAGGCCTAATGGCCGATGTGATGAATGTGAA
64 TAAGGCCTAATGGCCGATGTGATGAATGTGAA
62119205 AGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62119269 AGGCCTAATGGCCGATGTGATGAATGTGAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAA
62119299 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
62119364 AAGGCCTAATTGCCGATGTGATGAATGTGAA
65 AAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62119395 AGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
62119459 AGGCCTAATTGTCGATGTGATGAATGTGAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
62119489 GGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGGTA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62119553 AGGCCTAATGGCCGATGTGATGAATGTGAA
66 AGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * * *
62119583 AGTG-TGTATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62119647 AG
66 AG
62119649 TCCCGAAGGG
Statistics
Matches: 1808, Mismatches: 50, Indels: 40
0.95 0.03 0.02
Matches are distributed among these distances:
94 741 0.41
96 929 0.51
98 138 0.08
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (95 bp):
AGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:62117935 original size:143 final size:143
Alignment explanation
Indices: 62117677--62119648 Score: 3400
Period size: 143 Copynumber: 13.8 Consensus size: 143
62117667 CAGCCAAGAT
62117677 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
62117740 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
62117805 TGTGATGAATGTGAA
129 TGTGATGAATGTGAA
*
62117820 AGTGTATATATGCGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
* *
62117885 AAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGATAAGGCCTAATGGCCGATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
62117950 TGATGAATGTGAA
131 TGATGAATGTGAA
*
62117963 AGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTGTATATATGTG
1 A--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
62118026 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
64 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
62118091 TGTGATGAATGTGAA
129 TGTGATGAATGTGAA
* *
62118106 GGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
* *
62118171 AAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATATGATAAGGCCTAATGGCCGATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
62118236 TGATGAATGTGAA
131 TGATGAATGTGAA
*
62118249 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTGTATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
62118312 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
62118377 TGTGATGAATGTGAA
129 TGTGATGAATGTGAA
62118392 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
62118457 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATATATGTGATAAGGCCTAATGGCCGA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT--ATATATGTGATAAGGCCTAATGGCCGA
62118522 TGTGATGAATGTGAA
129 TGTGATGAATGTGAA
*
62118537 AGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
62118600 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
62118665 TGTGATGAATGTGAA
129 TGTGATGAATGTGAA
62118680 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
*
62118743 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAGTGGCCGA
64 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
*
62118808 TGTGATGAATGTCAA
129 TGTGATGAATGTGAA
*
62118823 AGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATATGTG
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
*
62118888 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
64 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
62118953 TGTGATGAATGTGAA
129 TGTGATGAATGTGAA
*
62118968 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTGTATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
*
62119031 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
62119096 TGATGAATGTGAA
131 TGATGAATGTGAA
* *
62119109 GGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
62119174 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
62119239 TGATGAATGTGAA
131 TGATGAATGTGAA
62119252 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
*
62119317 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATTGCCGATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
62119382 TGATGAATGTGAA
131 TGATGAATGTGAA
*
62119395 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
* * *
62119458 AAGGCCTAATTGTCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCGATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
62119523 TGATGAATGTGAA
131 TGATGAATGTGAA
* * * *
62119536 GGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TGTATATGTGAC
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
* * * * * * *
62119599 AGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62119649 TCCCGAAGGG
Statistics
Matches: 1752, Mismatches: 57, Indels: 42
0.95 0.03 0.02
Matches are distributed among these distances:
141 409 0.23
142 10 0.01
143 912 0.52
144 6 0.00
145 415 0.24
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAA
Found at i:62118527 original size:22 final size:22
Alignment explanation
Indices: 62118499--62118574 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
62118489 GTGTAAATAT
62118499 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
62118521 ATGTGATGAATGTGAAAGTGTGTAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
62118546 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
62118568 ATGTGAT
1 ATGTGAT
62118575 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:62119868 original size:37 final size:37
Alignment explanation
Indices: 62119767--62119868 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
62119757 CCGAGCTCTA
*
62119767 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
62119804 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
62119841 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
62119869 CGTCTGAGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:62122380 original size:26 final size:27
Alignment explanation
Indices: 62122351--62122474 Score: 119
Period size: 27 Copynumber: 4.6 Consensus size: 27
62122341 TTAATTTACC
*
62122351 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACCGAAATACCCCCAGTTTGTA
* *
62122377 AAATTACC-AAAGTACCCCCGGTTTATA
1 AAATTACCGAAA-TACCCCCAGTTTGTA
* * **
62122404 AAATTACCCAAATA-TCCTTGATTTGTA
1 AAATTACCGAAATACCCCCAG-TTTGTA
* *
62122431 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCCCCAGTTTGTA
*
62122458 AAATTACTGAAATACCC
1 AAATTACCGAAATACCC
62122475 TTGACATGTA
Statistics
Matches: 79, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
25 3 0.04
26 18 0.23
27 53 0.67
28 5 0.06
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATTACCGAAATACCCCCAGTTTGTA
Found at i:62122432 original size:27 final size:26
Alignment explanation
Indices: 62122402--62122490 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 26
62122392 CCCCGGTTTA
*
62122402 TAAAATTACCCAAATATCCTTGATTTG
1 TAAAATTACCGAAATA-CCTTGATTTG
* *
62122429 TAAAATTACCGAAATACCCTCAGTTTG
1 TAAAATTACCGAAATACCTTGA-TTTG
* * **
62122456 CAAAATTACTGAAATACCCTTGACATG
1 TAAAATTACCGAAATA-CCTTGATTTG
62122483 TAAAATTA
1 TAAAATTA
62122491 TCAAAGTACC
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
26 4 0.08
27 42 0.84
28 4 0.08
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (26 bp):
TAAAATTACCGAAATACCTTGATTTG
Found at i:62122519 original size:54 final size:54
Alignment explanation
Indices: 62122344--62122520 Score: 180
Period size: 54 Copynumber: 3.3 Consensus size: 54
62122334 GAATACTTTA
* ** * *
62122344 ATTTACCAAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCG
1 ATTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTACCAAAGTACCCTCG
* * ** * *
62122397 GTTTATAAAATTACCCAAATATCCTTGATTTGTAAAATTACCGAAA-TACCCTC-
1 ATTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTACC-AAAGTACCCTCG
* * *
62122450 AGTTTGCAAAATTACTGAAATACCCTTGACATGTAAAATTATCAAAGTACCCTCG
1 A-TTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTACCAAAGTACCCTCG
*
62122505 AATTACAAAATTACTG
1 ATTTACAAAATTACTG
62122521 TTTTACCCTC
Statistics
Matches: 98, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
53 21 0.21
54 73 0.74
55 4 0.04
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (54 bp):
ATTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTACCAAAGTACCCTCG
Found at i:62122527 original size:27 final size:27
Alignment explanation
Indices: 62122497--62122880 Score: 446
Period size: 27 Copynumber: 14.2 Consensus size: 27
62122487 ATTATCAAAG
*
62122497 TACCCTCGAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
62122524 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
62122551 TACCTTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
62122578 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
62122605 TACCATCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
62122632 TACCCTCAATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
62122659 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
62122686 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* * *
62122713 TACCTTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
62122740 TACCTTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
62122767 TACACTCGATTTGCAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
62122794 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
62122821 TACCTTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* **
62122848 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
62122875 TACCCT
1 TACCCT
62122881 TAGGGTGTTA
Statistics
Matches: 305, Mismatches: 50, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
27 304 1.00
28 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:62124848 original size:39 final size:40
Alignment explanation
Indices: 62124753--62125014 Score: 315
Period size: 39 Copynumber: 6.7 Consensus size: 40
62124743 TTGAATGATG
* * *
62124753 TCCGGGCTAAGTACCGAAGGC--TTGTGCTAAGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAAT-ACTAAT
*
62124791 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAAATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAATACTAAT
*
62124832 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAATACTAAT
*
62124871 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAATACTAAT
** *
62124910 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAATACTAAT
* *
62124949 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAATACTAAT
* *
62124988 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
62125015 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 13, Indels: 13
0.89 0.06 0.06
Matches are distributed among these distances:
39 131 0.65
40 60 0.30
41 12 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAATACTAAT
Found at i:62150072 original size:30 final size:30
Alignment explanation
Indices: 62150015--62150072 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
62150005 TTTTCGGGCC
* **
62150015 TAGGGGTAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
62150045 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
62150073 ATATGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:62153178 original size:80 final size:80
Alignment explanation
Indices: 62153045--62153341 Score: 406
Period size: 80 Copynumber: 3.7 Consensus size: 80
62153035 CGGATGATAA
* *
62153045 CCGGGCTAAGTCCCGAAGGCATTTGCGCT-AGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATT
*
62153108 TGTGTGAGTTACTATAT
64 TGTGCGAGTTACTATAT
*
62153125 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
62153190 TGCGAGTTATTACAT
66 TGCGAGTTACTATAT
* * *
62153205 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
62153270 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * * * *
62153285 CCGGGCTATGTCCCGAAGGCA-TTGAGTAAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
62153342 TACTTGGCTT
Statistics
Matches: 196, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
78 16 0.08
79 16 0.08
80 164 0.84
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:62153308 original size:40 final size:40
Alignment explanation
Indices: 62153045--62153307 Score: 411
Period size: 40 Copynumber: 6.6 Consensus size: 40
62153035 CGGATGATAA
* * *
62153045 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
62153085 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
62153125 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
62153165 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
62153205 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
62153245 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
62153285 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
62153308 GAGTAAGTAG
Statistics
Matches: 207, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 206 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:62161261 original size:40 final size:40
Alignment explanation
Indices: 62161206--62161462 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
62161196 CGGATGATAA
* * *
62161206 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
62161246 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
62161286 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
62161326 CCGGGCCAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
62161366 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
62161406 CCGGGCTATGTCCCGAAGGCA-TTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
62161445 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
62161463 TACTTGGCTT
Statistics
Matches: 196, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 166 0.85
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:62166795 original size:24 final size:25
Alignment explanation
Indices: 62166763--62166815 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
62166753 CTAAAATAGT
* * *
62166763 ATTATTTTT-ATTTTGGTCACTCTA
1 ATTATTTTTCAATTTAGCCACTCTA
62166787 ATTATTTTTCAATTTAGCCACTCTA
1 ATTATTTTTCAATTTAGCCACTCTA
62166812 ATTA
1 ATTA
62166816 AGATAATTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.26, C:0.15, G:0.06, T:0.53
Consensus pattern (25 bp):
ATTATTTTTCAATTTAGCCACTCTA
Found at i:62167412 original size:41 final size:41
Alignment explanation
Indices: 62167326--62167415 Score: 119
Period size: 41 Copynumber: 2.2 Consensus size: 41
62167316 AAAATGTTGC
*
62167326 AAAAGGTAAGGCATTAGCGGCGTTTATGAGAAAAAAGCCAC
1 AAAAGGTAAGGCATTAGCGGCGTTTATGAGAAAAAAGCCAA
* * * *
62167367 AAAAGGTAAGGCATTAGCGGTGTTTTTGA-ATAAACGCCGAA
1 AAAAGGTAAGGCATTAGCGGCGTTTATGAGAAAAAAGCC-AA
62167408 AAAAGGTA
1 AAAAGGTA
62167416 GAACTATAGC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 7 0.16
41 36 0.84
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (41 bp):
AAAAGGTAAGGCATTAGCGGCGTTTATGAGAAAAAAGCCAA
Found at i:62167688 original size:74 final size:75
Alignment explanation
Indices: 62167543--62167720 Score: 229
Period size: 74 Copynumber: 2.4 Consensus size: 75
62167533 CGGAACGTCA
* * * * *
62167543 AATTTTTTCCCCAAATCAATTCCCCCTCTCCCCGAAATCCCTAAGTTTCTTTCCTAGACCCTTTT
1 AATTTTTTCCCCAAATCAATT-CCCCTCTCCACGAAATCCCTAAATTTCTTTCCAAAACCCTTTC
*
62167608 CTTTTTTCCCT
65 CTTTTTTCCCG
*
62167619 AATTTTTTCCCCAAATCAATTCCCCT-TCCACGAAATCCCTAAATTT-TTTTCAAAATCCCTTTC
1 AATTTTTTCCCCAAATCAATTCCCCTCTCCACGAAATCCCTAAATTTCTTTCCAAAA-CCCTTTC
*
62167682 CTTTTTTCTCG
65 CTTTTTTCCCG
*
62167693 AA-TTTTTCCCCAAATCAGTTCCCC-CTCC
1 AATTTTTTCCCCAAATCAATTCCCCTCTCC
62167721 CTGATATATG
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
73 30 0.33
74 35 0.38
75 5 0.05
76 21 0.23
ACGTcount: A:0.21, C:0.35, G:0.03, T:0.40
Consensus pattern (75 bp):
AATTTTTTCCCCAAATCAATTCCCCTCTCCACGAAATCCCTAAATTTCTTTCCAAAACCCTTTCC
TTTTTTCCCG
Found at i:62170878 original size:33 final size:33
Alignment explanation
Indices: 62170834--62170911 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
62170824 AGTTAATGTG
* * *
62170834 CTTGATTTCCAACAGTAGATATAACGACAAATT
1 CTTGATTTCCAACAGTAAATAAAACGACAAACT
*
62170867 GC-TGATTTCCAACAGTAAATAAAATGACAAACT
1 -CTTGATTTCCAACAGTAAATAAAACGACAAACT
62170900 CTTGATTTCCAA
1 CTTGATTTCCAA
62170912 AAGGAAACAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
32 1 0.03
33 37 0.95
34 1 0.03
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (33 bp):
CTTGATTTCCAACAGTAAATAAAACGACAAACT
Found at i:62173681 original size:20 final size:19
Alignment explanation
Indices: 62173656--62173694 Score: 69
Period size: 19 Copynumber: 2.0 Consensus size: 19
62173646 AACAAAAAAA
62173656 AAGAAGAAGAGAAAAACAAG
1 AAGAAGAAG-GAAAAACAAG
62173676 AAGAAGAAGGAAAAACAAG
1 AAGAAGAAGGAAAAACAAG
62173695 TAAATAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.69, C:0.05, G:0.26, T:0.00
Consensus pattern (19 bp):
AAGAAGAAGGAAAAACAAG
Found at i:62175356 original size:12 final size:12
Alignment explanation
Indices: 62175339--62175364 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
62175329 ATAATTAAAA
62175339 TATTTTGTTTGT
1 TATTTTGTTTGT
62175351 TATTTTGTTTGT
1 TATTTTGTTTGT
62175363 TA
1 TA
62175365 AGGCAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (12 bp):
TATTTTGTTTGT
Found at i:62177207 original size:35 final size:35
Alignment explanation
Indices: 62177168--62177240 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
62177158 AATAAGAATA
* *
62177168 AAAGTTAATGATTATCATAACTTACATAAACATTT
1 AAAGTAAATGATTATCATAACTAACATAAACATTT
* *
62177203 AAAGTAAATGATTGTCATAACTAATATAAACATTT
1 AAAGTAAATGATTATCATAACTAACATAAACATTT
62177238 AAA
1 AAA
62177241 TAATATAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.34
Consensus pattern (35 bp):
AAAGTAAATGATTATCATAACTAACATAAACATTT
Found at i:62180181 original size:28 final size:28
Alignment explanation
Indices: 62180150--62180215 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
62180140 GATATGACAT
*
62180150 TGTGCTAAGTGAAATAAGACTATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCAA
* *
62180178 TGTGCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCATGGCAA
62180206 TGTGCTAAGT
1 TGTGCTAAGT
62180216 AAGAAATTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGACCATGGCAA
Found at i:62180322 original size:51 final size:51
Alignment explanation
Indices: 62180241--62180490 Score: 394
Period size: 51 Copynumber: 4.9 Consensus size: 51
62180231 TGAACCTTAG
*
62180241 GAATAAAATAGATTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
62180292 GAATATAATAGCTTTGGACACAAGTTTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * * *
62180343 TAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAAGCCACTTTTT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
62180394 GAATAAAATAGCTTTGGACACAAGTGGGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
62180445 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTAAGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
62180491 CGTGTATCCG
Statistics
Matches: 183, Mismatches: 15, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
50 1 0.01
51 182 0.99
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:62184067 original size:40 final size:39
Alignment explanation
Indices: 62184023--62184127 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
62184013 AGTGACCATA
*
62184023 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
62184063 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
62184101 AACCGGGCTATATCCCGAAGGCATTTG
1 -TCCGGACTA-AGCCCGAAGGCATTTG
62184128 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 31 0.53
40 25 0.43
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:62184084 original size:39 final size:40
Alignment explanation
Indices: 62184036--62184127 Score: 134
Period size: 39 Copynumber: 2.3 Consensus size: 40
62184026 GGACTAAGAT
*
62184036 CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTA-AGC
1 CCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTATAGC
* *
62184075 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATATC
1 CCGAAGGCATTTGTGCGAGATACTATAACCGGGCTATAGC
62184115 CCGAAGGCATTTG
1 CCGAAGGCATTTG
62184128 AACGAGTAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 32 0.67
40 16 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTATAACCGGGCTATAGC
Found at i:62184134 original size:40 final size:39
Alignment explanation
Indices: 62183986--62184127 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 39
62183976 AATGATGTCT
* * *
62183986 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCC
1 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAATA-CC
* * * *
62184026 GGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATACC
62184066 GGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-ATAACC
1 GGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT-ACC
*
62184105 GGGCTATATCCCGAAGGCATTTG
1 GGGCTA-AGCCCGAAGGCATTTG
62184128 AACGAGTAGC
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.36
40 43 0.51
41 9 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
GGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAATACC
Found at i:62184146 original size:79 final size:80
Alignment explanation
Indices: 62183986--62184133 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
62183976 AATGATGTCT
* **
62183986 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
62184051 CGAGATACTAATTCC
66 CGAGATACTAATTCC
* * * * *
62184066 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCT-ATATCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
62184128 AACGAG
64 AACGAG
62184134 TAGCTATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.05
79 40 0.69
80 15 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACTAATTCC
Found at i:62184421 original size:47 final size:47
Alignment explanation
Indices: 62184352--62184613 Score: 434
Period size: 47 Copynumber: 5.6 Consensus size: 47
62184342 AAGGGTTGGT
62184352 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62184399 AATGTGGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62184446 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62184493 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
62184540 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
62184587 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
62184614 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 201 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:62189595 original size:13 final size:13
Alignment explanation
Indices: 62189577--62189601 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62189567 TAATGGTATA
62189577 TTGAATCCATGAC
1 TTGAATCCATGAC
62189590 TTGAATCCATGA
1 TTGAATCCATGA
62189602 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:62190182 original size:27 final size:27
Alignment explanation
Indices: 62190152--62190408 Score: 298
Period size: 27 Copynumber: 9.5 Consensus size: 27
62190142 AAATTGTACA
*
62190152 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
62190179 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
62190206 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
*
62190233 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
62190260 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
62190287 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
*
62190314 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * * *
62190341 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAATTGACTATGTT
* * * *
62190368 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTT
*
62190395 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
62190409 GACTCAAAAT
Statistics
Matches: 197, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 197 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTT
Found at i:62190287 original size:81 final size:81
Alignment explanation
Indices: 62190152--62190387 Score: 411
Period size: 81 Copynumber: 2.9 Consensus size: 81
62190142 AAATTGTACA
62190152 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
62190217 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
62190233 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
62190298 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
62190314 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
*
62190378 TGCGAGTTGA
65 TGCGAATTGA
62190388 TTATATAGCA
Statistics
Matches: 149, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
80 1 0.01
81 148 0.99
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62197580 original size:13 final size:13
Alignment explanation
Indices: 62197562--62197586 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62197552 TAATGGTATA
62197562 TTGAATCCATGAC
1 TTGAATCCATGAC
62197575 TTGAATCCATGA
1 TTGAATCCATGA
62197587 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:62198165 original size:27 final size:27
Alignment explanation
Indices: 62198135--62198473 Score: 381
Period size: 27 Copynumber: 12.5 Consensus size: 27
62198125 AAATTGTACA
*
62198135 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
62198162 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
62198189 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
*
62198216 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
62198243 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
62198270 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
*
62198297 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
62198324 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
62198351 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
62198378 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-ATTGACTATGTT
* * * *
62198406 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAATTGACTATGTT
* * * *
62198433 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTT
*
62198460 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
62198474 GACTCAAAAT
Statistics
Matches: 266, Mismatches: 45, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 243 0.91
28 23 0.09
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTT
Found at i:62198270 original size:81 final size:81
Alignment explanation
Indices: 62198135--62198452 Score: 557
Period size: 81 Copynumber: 3.9 Consensus size: 81
62198125 AAATTGTACA
62198135 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
62198200 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
62198216 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
62198281 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
62198297 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
62198362 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** * *
62198378 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGT
*
62198442 GTGCGAGTTGA
64 GTGCGAATTGA
62198453 TTATATAGCA
Statistics
Matches: 229, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
81 178 0.78
82 51 0.22
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62200667 original size:40 final size:40
Alignment explanation
Indices: 62200450--62200656 Score: 310
Period size: 40 Copynumber: 5.2 Consensus size: 40
62200440 CAGATGATAA
* *
62200450 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* * * *
62200490 TCGGGCTAAGTCCTGAAGGCATTTGTGTGAGTTTCCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
*
62200530 CCGGGCTAAGTCACGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
62200570 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-CCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* *
62200609 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AAT
62200649 CCGGGCTA
1 CCGGGCTA
62200657 TGCCCTGAAG
Statistics
Matches: 151, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
39 38 0.25
40 111 0.74
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
Found at i:62200687 original size:40 final size:40
Alignment explanation
Indices: 62200446--62200680 Score: 194
Period size: 40 Copynumber: 5.9 Consensus size: 40
62200436 TATTCAGATG
* * *
62200446 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACT
* * * * * * *
62200486 A-AATTCGGGCTAAGTCCTGAAGGCATTTGTGTGAGTTTCC
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACT
* * * *
62200526 A-AATCCGGGCTAAGTCACGAAGGCATTTGTGCGAGTTACC
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACT
* * *
62200566 A-AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-CC
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACT
* *
62200605 A-AATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACT
* *
62200645 ATAACCGGGCTATG-CCCTGAAGGTATTCGAGCGAGT
1 ATAACCGGGCTAAGTCCC-GAAGGCATTCGAGCGAGT
62200681 AGCTATATCC
Statistics
Matches: 173, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 43 0.25
40 128 0.74
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACT
Found at i:62223051 original size:27 final size:27
Alignment explanation
Indices: 62223021--62223198 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
62223011 ATATTGAGTC
** *
62223021 CGCACACACAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
62223048 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
62223075 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
62223103 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
62223130 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
62223157 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
62223184 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62223199 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:62223160 original size:82 final size:81
Alignment explanation
Indices: 62223042--62223197 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62223032 TGCTATATAA
* *
62223042 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62223107 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62223124 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62223188 CACTTAGTGC
65 CACTTAGTGC
62223198 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62227458 original size:13 final size:13
Alignment explanation
Indices: 62227425--62227462 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
62227415 ACTATGATTA
62227425 AATTTTAATATTT
1 AATTTTAATATTT
62227438 AATCTTT-ATATTTT
1 AAT-TTTAATA-TTT
62227452 AATTTTAATAT
1 AATTTTAATAT
62227463 AATTTGGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (13 bp):
AATTTTAATATTT
Found at i:62229112 original size:21 final size:21
Alignment explanation
Indices: 62229082--62229128 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
62229072 AGAGCTCCTC
62229082 ATTGA-CATTGATCGAAGTTG
1 ATTGATCATTGATCGAAGTTG
* *
62229102 ATTGATCATTGGTCGACGTTG
1 ATTGATCATTGATCGAAGTTG
*
62229123 ACTGAT
1 ATTGAT
62229129 GTTGACCGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (21 bp):
ATTGATCATTGATCGAAGTTG
Found at i:62230576 original size:26 final size:26
Alignment explanation
Indices: 62230547--62230602 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
62230537 TGATACAAAT
62230547 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
62230573 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
62230599 TGAT
1 TGAT
62230603 GGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:62236677 original size:16 final size:16
Alignment explanation
Indices: 62236656--62236686 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62236646 AATTTATTTT
*
62236656 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
62236672 AATTAAATAATTTTC
1 AATTAAATAATTTTC
62236687 TCAACCTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:62241862 original size:2 final size:2
Alignment explanation
Indices: 62241855--62241892 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
62241845 TAGTGTTATA
62241855 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
62241893 AGTGAAATTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:62245144 original size:36 final size:36
Alignment explanation
Indices: 62245097--62245170 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
62245087 TAGCATAAGG
62245097 ATTGCTAATAATGGATTGGTGAAAAAATTTGATTTA
1 ATTGCTAATAATGGATTGGTGAAAAAATTTGATTTA
**
62245133 ATTGCTAATAATGGATTGGTGAAAATTTTTGATTTA
1 ATTGCTAATAATGGATTGGTGAAAAAATTTGATTTA
62245169 AT
1 AT
62245171 GAATAGATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.42
Consensus pattern (36 bp):
ATTGCTAATAATGGATTGGTGAAAAAATTTGATTTA
Found at i:62245549 original size:37 final size:37
Alignment explanation
Indices: 62245499--62245578 Score: 160
Period size: 37 Copynumber: 2.2 Consensus size: 37
62245489 GGACAAAAAT
62245499 GGGCATGTATGGATAAAATTTCAAAGAAAGGGCTTAA
1 GGGCATGTATGGATAAAATTTCAAAGAAAGGGCTTAA
62245536 GGGCATGTATGGATAAAATTTCAAAGAAAGGGCTTAA
1 GGGCATGTATGGATAAAATTTCAAAGAAAGGGCTTAA
62245573 GGGCAT
1 GGGCAT
62245579 TTTGGTCATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.39, C:0.09, G:0.29, T:0.24
Consensus pattern (37 bp):
GGGCATGTATGGATAAAATTTCAAAGAAAGGGCTTAA
Found at i:62247245 original size:42 final size:41
Alignment explanation
Indices: 62247166--62247305 Score: 113
Period size: 43 Copynumber: 3.3 Consensus size: 41
62247156 TCCCGGACGT
* * * * * *
62247166 GGTCTTACATGTAACTCAATATCGATGCCTCTATCCCAGACAG
1 GGTCTTACACGAAACTC-A-ATCGAGGCCTGTGTCCCAGACAC
* *
62247209 GGTCTTACACGAAA-TCAGATACGATG-CTGATGTCCCAGACAT
1 GGTCTTACACGAAACTCA-AT-CGAGGCCTG-TGTCCCAGACAC
* *
62247251 GGTCTTATACATAAATCTCAATCGAGGCCTGTGTCCCAGACAC
1 GGTCTTACAC-GAAA-CTCAATCGAGGCCTGTGTCCCAGACAC
62247294 GGTCTTACACGA
1 GGTCTTACACGA
62247306 TGTCTCAGAC
Statistics
Matches: 79, Mismatches: 12, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
41 5 0.06
42 27 0.34
43 39 0.49
44 5 0.06
45 3 0.04
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (41 bp):
GGTCTTACACGAAACTCAATCGAGGCCTGTGTCCCAGACAC
Found at i:62247899 original size:15 final size:15
Alignment explanation
Indices: 62247879--62247910 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
62247869 AGCCTTCATA
62247879 ATTCATTCCAAAAAC
1 ATTCATTCCAAAAAC
62247894 ATTCATTCCAAAAAC
1 ATTCATTCCAAAAAC
62247909 AT
1 AT
62247911 CACAAAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (15 bp):
ATTCATTCCAAAAAC
Found at i:62253747 original size:6 final size:6
Alignment explanation
Indices: 62253736--62253775 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
62253726 TGGCTTTCTC
62253736 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
62253776 GACTTTCAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (6 bp):
CTTTTT
Found at i:62253781 original size:18 final size:18
Alignment explanation
Indices: 62253742--62253781 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
62253732 TCTCCTTTTT
**
62253742 CTTTTTCTTTTTCTTTTT
1 CTTTTTCTTTTTCTTTGA
62253760 CTTTTTCTTTTTCTTTGA
1 CTTTTTCTTTTTCTTTGA
62253778 CTTT
1 CTTT
62253782 CAGTTATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.78
Consensus pattern (18 bp):
CTTTTTCTTTTTCTTTGA
Found at i:62271079 original size:2 final size:2
Alignment explanation
Indices: 62271072--62271105 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
62271062 TACTATTTTC
62271072 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
62271106 TGCGCGCAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:62274846 original size:23 final size:23
Alignment explanation
Indices: 62274820--62274865 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
62274810 TTCGGGCTCA
* *
62274820 ATTCATTTAGCGATCGCGAACAT
1 ATTCATTTAACGATCGCAAACAT
62274843 ATTCATTTAACGATCGCAAACAT
1 ATTCATTTAACGATCGCAAACAT
62274866 GTTTGTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (23 bp):
ATTCATTTAACGATCGCAAACAT
Found at i:62274874 original size:23 final size:23
Alignment explanation
Indices: 62274825--62274898 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
62274815 GCTCAATTCA
* * * *
62274825 TTTAGCGATCGCGAACATATTCA
1 TTTAACGATCGCAAACATGTTCG
*
62274848 TTTAACGATCGCAAACATGTTTG
1 TTTAACGATCGCAAACATGTTCG
* *
62274871 TTTATATGTTCGCAAACATGTTCG
1 TTTA-ACGATCGCAAACATGTTCG
62274895 TTTA
1 TTTA
62274899 TATATATATT
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 22 0.52
24 20 0.48
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (23 bp):
TTTAACGATCGCAAACATGTTCG
Found at i:62274888 original size:24 final size:24
Alignment explanation
Indices: 62274856--62274901 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
62274846 CATTTAACGA
*
62274856 TCGCAAACATGTTTGTTTATATGT
1 TCGCAAACATGTTCGTTTATATGT
62274880 TCGCAAACATGTTCGTTTATAT
1 TCGCAAACATGTTCGTTTATAT
62274902 ATATATTTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (24 bp):
TCGCAAACATGTTCGTTTATATGT
Found at i:62274913 original size:17 final size:17
Alignment explanation
Indices: 62274891--62274927 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
62274881 CGCAAACATG
62274891 TTCGTTTATATATATAT
1 TTCGTTTATATATATAT
62274908 TTCGTTTATATATATAT
1 TTCGTTTATATATATAT
62274925 TTC
1 TTC
62274928 CTATTGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.59
Consensus pattern (17 bp):
TTCGTTTATATATATAT
Found at i:62276254 original size:12 final size:11
Alignment explanation
Indices: 62276233--62276271 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
62276223 TAAATACATA
62276233 AGTTATAAACG
1 AGTTATAAACG
62276244 AGTTAATAAACG
1 AGTT-ATAAACG
*
62276256 AGTTTTGAAACG
1 AGTTAT-AAACG
62276268 AGTT
1 AGTT
62276272 TGTTTGGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 5 0.20
12 20 0.80
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (11 bp):
AGTTATAAACG
Found at i:62286354 original size:27 final size:27
Alignment explanation
Indices: 62286335--62286681 Score: 460
Period size: 27 Copynumber: 12.8 Consensus size: 27
62286325 ATTACCAAAG
* *
62286335 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
62286362 TACCCTTGATTGACAGAATTACCACTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
62286389 TATCCTCGATTTATATAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
62286416 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
62286443 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
**
62286470 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
62286497 TACCCCTCAATTTATAGAATTACCATTT
1 TA-CCCTCGATTTATAGAATTACCATTT
* *
62286525 TACCCTCGATTTATAAAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
62286552 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
62286579 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
62286606 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
62286633 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
62286660 TACCCTCAATTTATAAAATTAC
1 TACCCTCGATTTATAGAATTAC
62286682 TAAAATACCA
Statistics
Matches: 286, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
27 262 0.92
28 24 0.08
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:62286690 original size:27 final size:27
Alignment explanation
Indices: 62286500--62286827 Score: 169
Period size: 27 Copynumber: 12.1 Consensus size: 27
62286490 ACTGTTTTAC
* ***
62286500 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCAATTTATAAAATTACCAAAATA
* * ***
62286527 CCCTCGATTTATAAAATTATCATTTTA
1 CCCTCAATTTATAAAATTACCAAAATA
* * * ***
62286554 CCCTCGATTTATAGAATTATCATTTTA
1 CCCTCAATTTATAAAATTACCAAAATA
* * ***
62286581 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCAATTTATAAAATTACCAAAATA
* ****
62286608 CCCTCAATTTACAAAATTACCGTTTTA
1 CCCTCAATTTATAAAATTACCAAAATA
* * * ****
62286635 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCAATTTATAAAATTACCAAAATA
*
62286662 CCCTCAATTTATAAAATTACTAAAATA
1 CCCTCAATTTATAAAATTACCAAAATA
* *** *
62286689 CCATTGGTTTACAAAATTACCAAAATA
1 CCCTCAATTTATAAAATTACCAAAATA
* *
62286716 CCC-CTAGTTTGTAAAATTACCAAAATA
1 CCCTC-AATTTATAAAATTACCAAAATA
** * *
62286743 CCACT-GGTTTTTGAAATTACCAAAATA
1 CC-CTCAATTTATAAAATTACCAAAATA
*
62286770 CCCTCAATTTGTAAAATTACCAAAATA
1 CCCTCAATTTATAAAATTACCAAAATA
* *
62286797 CCC-CTGATTTACAAAATTA-CAGAAATA
1 CCCTC-AATTTATAAAATTACCA-AAATA
62286824 CCCT
1 CCCT
62286828 TAACTTTCTA
Statistics
Matches: 254, Mismatches: 40, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
26 5 0.02
27 248 0.98
28 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (27 bp):
CCCTCAATTTATAAAATTACCAAAATA
Done.