Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 198 of 295
Found at i:63365234 original size:60 final size:60
Alignment explanation
Indices: 63365136--63365272 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 60
63365126 CTGTGTTAAT
* * * * *
63365136 ATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCTCAGATTGATACTGAC
1 ATGGGCTAGGCCCAGTATATCTCGACTTGTAATAGGGCTACGCCCCAGATTAATACTGAC
* * * * *
63365196 ATGGGCTAGGCCCAGTATACTCTCTTAC-TGTAA-GGGGCTATGCCCCAGATTAATATTGAT
1 ATGGGCTAGGCCCAGTATA-TCTC-GACTTGTAATAGGGCTACGCCCCAGATTAATACTGAC
63365256 ATGGGCTAAGGCCCAGT
1 ATGGGCT-AGGCCCAGT
63365273 TAACTCTGAT
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
60 44 0.69
61 18 0.28
62 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (60 bp):
ATGGGCTAGGCCCAGTATATCTCGACTTGTAATAGGGCTACGCCCCAGATTAATACTGAC
Found at i:63366181 original size:35 final size:35
Alignment explanation
Indices: 63366142--63366214 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
63366132 CCCCTTTCAA
*
63366142 GGTGTCTCCCTGAAGGACCTGTATACCGTTTGCAT
1 GGTGTCACCCTGAAGGACCTGTATACCGTTTGCAT
63366177 GGTGTCACCCTGAAGGACCTGTATACCGTTTGCAT
1 GGTGTCACCCTGAAGGACCTGTATACCGTTTGCAT
63366212 GGT
1 GGT
63366215 ATTGTCTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.18, C:0.25, G:0.27, T:0.30
Consensus pattern (35 bp):
GGTGTCACCCTGAAGGACCTGTATACCGTTTGCAT
Found at i:63369828 original size:19 final size:19
Alignment explanation
Indices: 63369792--63369830 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
63369782 TTAAAATTTG
* *
63369792 AAGAATAGGTATCGATACC
1 AAGAATAGGTACCAATACC
*
63369811 AAGACTAGGTACCAATACC
1 AAGAATAGGTACCAATACC
63369830 A
1 A
63369831 TTTTTAGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.18
Consensus pattern (19 bp):
AAGAATAGGTACCAATACC
Found at i:63371457 original size:16 final size:15
Alignment explanation
Indices: 63371430--63371462 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
63371420 AAAATTTTAA
63371430 AAATTAAAATAAATT
1 AAATTAAAATAAATT
63371445 AAATTAGAAATAAATT
1 AAATTA-AAATAAATT
63371461 AA
1 AA
63371463 TGTTGATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (15 bp):
AAATTAAAATAAATT
Found at i:63372888 original size:23 final size:23
Alignment explanation
Indices: 63372858--63372904 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
63372848 AGACATAGTT
63372858 TATTCCTCTTGTAATTATTTGAA
1 TATTCCTCTTGTAATTATTTGAA
63372881 TATTCCTCTTGTAATTATTTGAA
1 TATTCCTCTTGTAATTATTTGAA
63372904 T
1 T
63372905 TCGACATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.09, T:0.53
Consensus pattern (23 bp):
TATTCCTCTTGTAATTATTTGAA
Found at i:63376111 original size:50 final size:49
Alignment explanation
Indices: 63376000--63376175 Score: 176
Period size: 50 Copynumber: 3.5 Consensus size: 49
63375990 CTGGTACGCA
* * **
63376000 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* * *
63376049 TAGTAGCCTGCACTTAGTATTACATACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* *** * *
63376099 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAATACACG
63376150 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
63376176 TGCGACCTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 27 0.26
50 39 0.37
51 36 0.34
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:63376183 original size:101 final size:99
Alignment explanation
Indices: 63376000--63376186 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 99
63375990 CTGGTACGCA
* * *
63376000 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
* * *
63376065 GTATTACATACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * *
63376099 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
63376163 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
63376187 AATAGATCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.40
101 41 0.55
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:63378361 original size:15 final size:15
Alignment explanation
Indices: 63378314--63378369 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
63378304 CAAGAAAATC
63378314 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
63378329 -AGATAGAA-AAACCCA
1 GA-ATA-AAGAAATCCA
63378344 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
63378359 GAATAAAGAAA
1 GAATAAAGAAA
63378370 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 3 0.09
15 29 0.83
16 3 0.09
ACGTcount: A:0.62, C:0.12, G:0.14, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:63381506 original size:50 final size:49
Alignment explanation
Indices: 63381396--63381571 Score: 185
Period size: 50 Copynumber: 3.5 Consensus size: 49
63381386 CTGGTATGCA
* * * **
63381396 TAGTAGCATGCACTTAGTACTACACATGAGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
63381445 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* * *** *
63381495 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ATAGTTTTCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAATACACG
63381546 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
63381572 TGCGACCTCA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 28 0.26
50 41 0.38
51 37 0.34
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:63391056 original size:13 final size:14
Alignment explanation
Indices: 63391030--63391061 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
63391020 ACTAACGATG
63391030 AATTAAACCATTAT
1 AATTAAACCATTAT
63391044 AATTAAA-CATTAT
1 AATTAAACCATTAT
63391057 AATTA
1 AATTA
63391062 TTTATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:63408698 original size:12 final size:12
Alignment explanation
Indices: 63408683--63408708 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63408673 ATCATCTTCT
63408683 TCATCAGATTCA
1 TCATCAGATTCA
63408695 TCATCAGATTCA
1 TCATCAGATTCA
63408707 TC
1 TC
63408709 CCTCGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:63410464 original size:7 final size:7
Alignment explanation
Indices: 63410454--63410478 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63410444 AGATAATACA
63410454 TATCAAG
1 TATCAAG
63410461 TATCAAG
1 TATCAAG
63410468 TATCAAG
1 TATCAAG
63410475 TATC
1 TATC
63410479 TAATGGGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (7 bp):
TATCAAG
Found at i:63410554 original size:9 final size:9
Alignment explanation
Indices: 63410536--63410838 Score: 257
Period size: 9 Copynumber: 34.6 Consensus size: 9
63410526 TATTTATGTA
63410536 TTATGTAAG
1 TTATGTAAG
*
63410545 TTAAGTAAG
1 TTATGTAAG
*
63410554 TTTTGTAAG
1 TTATGTAAG
63410563 TTATGTAAG
1 TTATGTAAG
*
63410572 TTTTGTAAG
1 TTATGTAAG
63410581 TTATGTAAG
1 TTATGTAAG
* *
63410590 ATATGATATG
1 TTATG-TAAG
* * *
63410600 ATATAT-AT
1 TTATGTAAG
63410608 TTATGTAAG
1 TTATGTAAG
63410617 TTATGTAAG
1 TTATGTAAG
* *
63410626 TTATAT-AT
1 TTATGTAAG
* *
63410634 TTATCTAAA
1 TTATGTAAG
*
63410643 TTATATAAG
1 TTATGTAAG
63410652 TTATGTAAG
1 TTATGTAAG
63410661 TTATGTAAG
1 TTATGTAAG
*
63410670 TTATGATATG
1 TTATG-TAAG
* * *
63410680 ATATAT-AT
1 TTATGTAAG
63410688 TTATGTAAG
1 TTATGTAAG
63410697 TTATGTAAG
1 TTATGTAAG
* *
63410706 TTATAT-AT
1 TTATGTAAG
*
63410714 TTATCTAAG
1 TTATGTAAG
63410723 TTATGTAAG
1 TTATGTAAG
*
63410732 TTATGTAAA
1 TTATGTAAG
*
63410741 TTA--T-AT
1 TTATGTAAG
*
63410747 TTATATAAG
1 TTATGTAAG
*
63410756 TTATATAAG
1 TTATGTAAG
63410765 TTATGTAAG
1 TTATGTAAG
63410774 TTATGTAAG
1 TTATGTAAG
*
63410783 TTATGTAAA
1 TTATGTAAG
*
63410792 TTA--T-AT
1 TTATGTAAG
*
63410798 TTATATAAG
1 TTATGTAAG
*
63410807 TTATATAAG
1 TTATGTAAG
*
63410816 TTATGTAAA
1 TTATGTAAG
63410825 TTATGTAAG
1 TTATGTAAG
63410834 TTATG
1 TTATG
63410839 ATATGATATA
Statistics
Matches: 238, Mismatches: 44, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
6 8 0.03
7 2 0.01
8 22 0.09
9 193 0.81
10 13 0.05
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:63410665 original size:80 final size:80
Alignment explanation
Indices: 63410522--63410854 Score: 381
Period size: 80 Copynumber: 4.1 Consensus size: 80
63410512 GATTTTCAAG
* * * *
63410522 TATATATTTATGT-A-TTATGTAAGTTA-AGTAAGTTT-TGTAAGTTATGTAAGTTTTGTAAGTT
1 TATATATTTATGTAAGTTATGTAAGTTATA-T-A-TTTATCTAAGTTATATAAGTTATGTAAATT
63410583 ATGTAAGATATGATATGA
63 ATGTAAGATATGATATGA
* *
63410601 TATATATTTATGTAAGTTATGTAAGTTATATATTTATCTAAATTATATAAGTTATGTAAGTTATG
1 TATATATTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAATTATG
*
63410666 TAAGTTATGATATGA
66 TAAGATATGATATGA
*
63410681 TATATATTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATGTAAGTTATGTAAATTATA
1 TATATATTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAATTAT-
* * * * *
63410746 TTTATATAAGTTATATAAGT
65 GTAAGAT-A-TGATAT--GA
* * * *
63410766 TATGTAAGTTATGTAAGTTATGTAA-AT-TATATTTATATAAGTTATATAAGTTATGTAAATTAT
1 TATAT-ATTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAATTAT
*
63410829 GTAAGTTATGATATGA
65 GTAAGATATGATATGA
63410845 TATATATTTA
1 TATATATTTA
63410855 ACATTAAGAT
Statistics
Matches: 217, Mismatches: 27, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.02
79 21 0.10
80 102 0.47
81 21 0.10
82 3 0.01
83 8 0.04
84 34 0.16
85 6 0.03
86 18 0.08
ACGTcount: A:0.37, C:0.01, G:0.14, T:0.48
Consensus pattern (80 bp):
TATATATTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAATTATG
TAAGATATGATATGA
Found at i:63410750 original size:24 final size:24
Alignment explanation
Indices: 63410723--63410819 Score: 104
Period size: 24 Copynumber: 3.9 Consensus size: 24
63410713 TTTATCTAAG
* *
63410723 TTATGTAAGTTATGTAAATTATAT
1 TTATATAAGTTATATAAATTATAT
* *
63410747 TTATATAAGTTATATAAGTTATGTAAG
1 TTATATAAGTTATATAAATTA--T-AT
* *
63410774 TTATGTAAGTTATGTAAATTATAT
1 TTATATAAGTTATATAAATTATAT
*
63410798 TTATATAAGTTATATAAGTTAT
1 TTATATAAGTTATATAAATTAT
63410820 GTAAATTATG
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
24 38 0.64
25 1 0.02
26 1 0.02
27 19 0.32
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (24 bp):
TTATATAAGTTATATAAATTATAT
Found at i:63410816 original size:33 final size:33
Alignment explanation
Indices: 63410765--63410828 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
63410755 GTTATATAAG
* *
63410765 TTATGTAAGTTATGTAAGTTATGTAAATTATAT
1 TTATATAAGTTATATAAGTTATGTAAATTATAT
63410798 TTATATAAGTTATATAAGTTATGTAAATTAT
1 TTATATAAGTTATATAAGTTATGTAAATTAT
63410829 GTAAGTTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (33 bp):
TTATATAAGTTATATAAGTTATGTAAATTATAT
Found at i:63410980 original size:19 final size:19
Alignment explanation
Indices: 63410958--63410998 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
63410948 TATATTGATA
* *
63410958 AAAAATATTTATAAATTTT
1 AAAAATATTTAAAAATATT
63410977 AAAAATATTTAAAAATATT
1 AAAAATATTTAAAAATATT
63410996 AAA
1 AAA
63410999 TATTAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATATTTAAAAATATT
Found at i:63410987 original size:10 final size:10
Alignment explanation
Indices: 63410958--63410995 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
63410948 TATATTGATA
63410958 AAAAATATTT
1 AAAAATATTT
*
63410968 ATAAAT-TTT
1 AAAAATATTT
63410977 AAAAATATTT
1 AAAAATATTT
63410987 AAAAATATT
1 AAAAATATT
63410996 AAATATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
AAAAATATTT
Found at i:63411018 original size:16 final size:16
Alignment explanation
Indices: 63410999--63411037 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
63410989 AAATATTAAA
63410999 TATTAAAATAAAAAAT
1 TATTAAAATAAAAAAT
*
63411015 TATTAATATAAAAAAT
1 TATTAAAATAAAAAAT
*
63411031 TAATAAA
1 TATTAAA
63411038 TATGATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
TATTAAAATAAAAAAT
Found at i:63411030 original size:23 final size:22
Alignment explanation
Indices: 63410987--63411028 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
63410977 AAAAATATTT
*
63410987 AAAAATATTAAATATTAAAATA
1 AAAAATATTAAATATAAAAATA
63411009 AAAAATTATT-AATATAAAAA
1 AAAAA-TATTAAATATAAAAA
63411029 ATTAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAAATATTAAATATAAAAATA
Found at i:63411563 original size:26 final size:23
Alignment explanation
Indices: 63411537--63411582 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
63411527 CTTTTTTATT
*
63411537 ATTATCAAATGAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
63411560 ATTATCAAATAAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
63411583 CAAATACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTATCAAATAAATTTTCTTAAC
Found at i:63411731 original size:2 final size:2
Alignment explanation
Indices: 63411724--63411754 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
63411714 GCATGTTTGT
63411724 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
63411755 ATATATATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:63412294 original size:25 final size:25
Alignment explanation
Indices: 63412261--63412326 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
63412251 CTAGAGAAGC
*
63412261 AGCA-AGGGATGCCGACAGAGATGT
1 AGCAGAGGGATGCCGACAGAAATGT
* **
63412285 AGTAGAGGGATGCCGATGGAAATGT
1 AGCAGAGGGATGCCGACAGAAATGT
63412310 AGCAGA-GGACTGCCGAC
1 AGCAGAGGGA-TGCCGAC
63412327 GACGATGCCG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
24 6 0.18
25 28 0.82
ACGTcount: A:0.32, C:0.17, G:0.38, T:0.14
Consensus pattern (25 bp):
AGCAGAGGGATGCCGACAGAAATGT
Found at i:63412342 original size:22 final size:22
Alignment explanation
Indices: 63412314--63412356 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
63412304 AAATGTAGCA
* *
63412314 GAGGACTGCCGACGACGATGCC
1 GAGGACTACCGAAGACGATGCC
*
63412336 GAGGACTACCGAAGGCGATGC
1 GAGGACTACCGAAGACGATGC
63412357 AGCAGACGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.28, G:0.37, T:0.09
Consensus pattern (22 bp):
GAGGACTACCGAAGACGATGCC
Found at i:63412457 original size:14 final size:14
Alignment explanation
Indices: 63412438--63412482 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
63412428 AACAACCCAA
63412438 GATATATGCATATT
1 GATATATGCATATT
63412452 GATATATG--TA-T
1 GATATATGCATATT
63412463 -ATATATGCATATT
1 GATATATGCATATT
63412476 GATATAT
1 GATATAT
63412483 ATATACATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
10 7 0.26
11 1 0.04
12 4 0.15
13 1 0.04
14 14 0.52
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (14 bp):
GATATATGCATATT
Found at i:63412469 original size:24 final size:24
Alignment explanation
Indices: 63412439--63412487 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
63412429 ACAACCCAAG
*
63412439 ATATATGCATATTGATATATGTAT
1 ATATATGCATATTGATATATATAT
63412463 ATATATGCATATTGATATATATAT
1 ATATATGCATATTGATATATATAT
63412487 A
1 A
63412488 CATTACAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (24 bp):
ATATATGCATATTGATATATATAT
Found at i:63416062 original size:18 final size:17
Alignment explanation
Indices: 63416010--63416060 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
63416000 GACAAATGGG
63416010 TTTGATTTGGGGGAAAT
1 TTTGATTTGGGGGAAAT
* * **
63416027 TTAGCGTTTAAGGGAAAT
1 TTTG-ATTTGGGGGAAAT
63416045 TTTGATTTGGGGGAAA
1 TTTGATTTGGGGGAAA
63416061 ATAAGGGGTT
Statistics
Matches: 25, Mismatches: 8, Indels: 2
0.71 0.23 0.06
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.27, C:0.02, G:0.33, T:0.37
Consensus pattern (17 bp):
TTTGATTTGGGGGAAAT
Found at i:63417380 original size:38 final size:36
Alignment explanation
Indices: 63417305--63417384 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 36
63417295 CCCAGCCCAT
* *
63417305 ACCATAAACTTAACATACTATACCATTGAACCTTAA
1 ACCATAAACTTAAAATACTATACCATTGAACCCTAA
63417341 ACCATAAACTTAAAATA-TATTCTACCATTGAACCCTAA
1 ACCATAAACTTAAAATACTA---TACCATTGAACCCTAA
63417379 ACCATA
1 ACCATA
63417385 GGCCTTAAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
35 2 0.05
36 16 0.41
38 21 0.54
ACGTcount: A:0.45, C:0.25, G:0.03, T:0.28
Consensus pattern (36 bp):
ACCATAAACTTAAAATACTATACCATTGAACCCTAA
Found at i:63417604 original size:21 final size:21
Alignment explanation
Indices: 63417538--63417619 Score: 56
Period size: 21 Copynumber: 3.9 Consensus size: 21
63417528 GGTTTAGGGT
* * * *
63417538 TTTAGAGTTTATGGATTAGTG
1 TTTAGGGTTTAGGGTTTAATG
*** **
63417559 TTTAGGGTTTATATTTTAAAA
1 TTTAGGGTTTAGGGTTTAATG
63417580 TTTAGGGTTTAGGGTTTAATG
1 TTTAGGGTTTAGGGTTTAATG
* *
63417601 TTTACGATTTAAGGGTTTA
1 TTTAGGGTTT-AGGGTTTA
63417620 CAGAAAGCCA
Statistics
Matches: 46, Mismatches: 14, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
21 38 0.83
22 8 0.17
ACGTcount: A:0.26, C:0.01, G:0.24, T:0.49
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTAATG
Found at i:63417604 original size:28 final size:28
Alignment explanation
Indices: 63417553--63417619 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
63417543 AGTTTATGGA
*
63417553 TTAGTGTTTAGGGTTTATATTTTAAAAT
1 TTAGGGTTTAGGGTTTATATTTTAAAAT
**
63417581 TTAGGGTTTAGGGTTTA-ATGTTTACGAT
1 TTAGGGTTTAGGGTTTATAT-TTTAAAAT
63417609 TTAAGGGTTTA
1 TT-AGGGTTTA
63417620 CAGAAAGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 2 0.06
28 24 0.71
29 8 0.24
ACGTcount: A:0.25, C:0.01, G:0.24, T:0.49
Consensus pattern (28 bp):
TTAGGGTTTAGGGTTTATATTTTAAAAT
Found at i:63418009 original size:36 final size:37
Alignment explanation
Indices: 63417963--63418033 Score: 108
Period size: 36 Copynumber: 1.9 Consensus size: 37
63417953 ATTTTACATA
*
63417963 AAAATGCCGCTATTCATCAATTTTT-GCGGCGTTTTT
1 AAAACGCCGCTATTCATCAATTTTTAGCGGCGTTTTT
* *
63417999 AAAACGCCGCTATTGATCAATTTTTAGTGGCGTTT
1 AAAACGCCGCTATTCATCAATTTTTAGCGGCGTTT
63418034 CGGCCAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
36 23 0.74
37 8 0.26
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (37 bp):
AAAACGCCGCTATTCATCAATTTTTAGCGGCGTTTTT
Found at i:63419039 original size:20 final size:20
Alignment explanation
Indices: 63419000--63419072 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
63418990 TGTTGTTTTA
*
63419000 AATTGATTCTTTGCTTATTTG
1 AATTGATTCTTT-ATTATTTG
*
63419021 AATTGATTGTTTATTATTTG
1 AATTGATTCTTTATTATTTG
* * * * *
63419041 GATCGATTCATTATTGTTTA
1 AATTGATTCTTTATTATTTG
63419061 AATTGATTCTTT
1 AATTGATTCTTT
63419073 GTTGGTTAAC
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
20 30 0.73
21 11 0.27
ACGTcount: A:0.23, C:0.07, G:0.14, T:0.56
Consensus pattern (20 bp):
AATTGATTCTTTATTATTTG
Found at i:63421475 original size:15 final size:15
Alignment explanation
Indices: 63421451--63421516 Score: 53
Period size: 15 Copynumber: 4.4 Consensus size: 15
63421441 TATAACAAAA
*
63421451 TTCAACACTTAATTT
1 TTCAATACTTAATTT
*
63421466 TTCAATACTTATTTT
1 TTCAATACTTAATTT
* *
63421481 TTCAAGA-TATACTTT
1 TTCAATACT-TAATTT
* * *
63421496 TTCAGTAGTTAAATT
1 TTCAATACTTAATTT
63421511 TTCAAT
1 TTCAAT
63421517 TTGTCAAATA
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
14 1 0.03
15 38 0.95
16 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.05, T:0.50
Consensus pattern (15 bp):
TTCAATACTTAATTT
Found at i:63422052 original size:20 final size:22
Alignment explanation
Indices: 63422010--63422052 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
63422000 CCTCTCACAA
*
63422010 TCTCTCTAAATTCTTTCTAAAT
1 TCTCTCTAAATTCTCTCTAAAT
*
63422032 TCTCTC-AAATT-TCTCTCAAT
1 TCTCTCTAAATTCTCTCTAAAT
63422052 T
1 T
63422053 TTTTGTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 5 0.26
22 6 0.32
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (22 bp):
TCTCTCTAAATTCTCTCTAAAT
Found at i:63422061 original size:22 final size:23
Alignment explanation
Indices: 63422036--63422078 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
63422026 CTAAATTCTC
63422036 TCAAA-TT-TCTCTCAATTTTTTG
1 TCAAAGTTGTCTCT-AATTTTTTG
63422058 TCAAAGTTGTCTCTAATTTTT
1 TCAAAGTTGTCTCTAATTTTT
63422079 GCAAAAAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 9 0.47
24 5 0.26
ACGTcount: A:0.23, C:0.16, G:0.07, T:0.53
Consensus pattern (23 bp):
TCAAAGTTGTCTCTAATTTTTTG
Found at i:63422128 original size:19 final size:19
Alignment explanation
Indices: 63422092--63422129 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
63422082 AAAAAGCTGT
**
63422092 GTTTTATTTTTTTGAATTA
1 GTTTTATTTTTTAAAATTA
63422111 GTTTTATTTTTTAAAATTA
1 GTTTTATTTTTTAAAATTA
63422130 CAAAAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (19 bp):
GTTTTATTTTTTAAAATTA
Found at i:63423229 original size:7 final size:7
Alignment explanation
Indices: 63423218--63423256 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
63423208 AGTCGTTTCG
*
63423218 TATTTAG
1 TATTTAT
63423225 TATTTAT
1 TATTTAT
63423232 TATTTAT
1 TATTTAT
63423239 TATTTAT
1 TATTTAT
63423246 TATTTAT
1 TATTTAT
63423253 TATT
1 TATT
63423257 ACCTATATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (7 bp):
TATTTAT
Found at i:63423898 original size:18 final size:18
Alignment explanation
Indices: 63423875--63423916 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
63423865 GCCAGGTGCA
*
63423875 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
*
63423893 TATCCTAACCCTTTTATG
1 TATCCTAACCCTTATATG
*
63423911 TTTCCT
1 TATCCT
63423917 TTACCCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.29, G:0.07, T:0.45
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:63426608 original size:27 final size:27
Alignment explanation
Indices: 63426577--63426754 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63426567 TAAATTGTAC
63426577 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63426604 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63426630 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63426658 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63426686 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63426713 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63426740 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63426755 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63426691 original size:82 final size:81
Alignment explanation
Indices: 63426578--63426733 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63426568 AAATTGTACA
* *
63426578 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63426642 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63426659 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63426724 TGCGAGTTGA
65 TGCGAATTGA
63426734 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63426745 original size:82 final size:81
Alignment explanation
Indices: 63426574--63426754 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63426564 GATTAAATTG
* *
63426574 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63426639 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63426655 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63426719 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63426737 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63426755 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63430499 original size:126 final size:125
Alignment explanation
Indices: 63430263--63430696 Score: 697
Period size: 126 Copynumber: 3.5 Consensus size: 125
63430253 AGTCTAAGGC
*
63430263 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCCGTAATTTTGCTGAC
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTGAC
* * *
63430328 AGTGCATCCTTCTTGAAGCATTTTTGACACTATTTGATCAGAAACATCTTTTCAAAATTA
66 AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
* * *
63430388 TTTTATCAGATACTACAGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGA
1 TTTT-TCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTGA
* * * *
63430453 CAATGCATCTTTCTTGAAGTGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTA
65 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
* * * *
63430514 TTTTATCAAATACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTTTTTTTCATAATTTTGCTGA
1 TTTT-TCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTGA
*
63430579 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAACTTA
65 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
*
63430640 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTTTTTCCGTAATT
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATT
63430697 AATAGTTAAT
Statistics
Matches: 280, Mismatches: 28, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
125 52 0.19
126 228 0.81
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (125 bp):
TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTGAC
AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
Found at i:63430845 original size:16 final size:16
Alignment explanation
Indices: 63430826--63430858 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
63430816 TAAAAAACAC
63430826 TAAAACACTAAAACCT
1 TAAAACACTAAAACCT
*
63430842 TAAACCACTAAAACCT
1 TAAAACACTAAAACCT
63430858 T
1 T
63430859 GATCCTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.21
Consensus pattern (16 bp):
TAAAACACTAAAACCT
Found at i:63430985 original size:166 final size:163
Alignment explanation
Indices: 63430717--63431624 Score: 713
Period size: 166 Copynumber: 5.7 Consensus size: 163
63430707 TTAATTAATA
* *
63430717 AACCCTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
1 AACCTTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAAT
*
63430782 TAACCCTCAACTCTAATTAAATTAATTTTTGCCTTAAAAAACACTAAAACACTAAAACCTTAAAC
66 TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACACT--AACC-TAAAC
*
63430847 CACTAAAACCTTGATCCTAAAACAATAAAAAACCTT
128 CACTAAAACCTTGATCCTAAAACAATAAAAAACCCT
* *
63430883 AACCTT-AAAAACCCTAAATCCTAATTTAATTAATTTTTTTTATTTTCATAGTTAATTTAATTAA
1 AACCTTAAAAAACCCTAAACCCTAATTTAATTGA-TTTTTTTATTTTCATAGTTAATTTAATTAA
* * *
63430947 TTAACCCTCAACTCTAATTAAATAAATTCTTCCCTTAAAAAA-ACT-AAA-AC---CCTAAACTA
65 TTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACACTAACCTAAACCA
*
63431006 TTAAAACCTTGATCCTAAAACAATAAAAAACCCT
130 CTAAAACCTTGATCCTAAAACAATAAAAAACCCT
*
63431040 AACCTTAAAAAACTCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAAT
1 AACCTTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAAT
* * *
63431105 TAACCTTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAATCCTAAAACA
66 TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACACTAA-CCT-AAACC
* * * ****
63431170 ATCAAAAACCCT-AACCTTAAAA-AACCTTAAACCCT
129 A-CTAAAACCTTGATCC-TAAAACAATAAAAAACCCT
* *** ***** * ** * * *** * *
63431205 AA-TTTAATTGA---T-TTTTTTAATTTCATAGTTAATTTAATTA-ATTAACCCTCAACTCTAAT
1 AACCTTAAAAAACCCTAAACCCTAATTT-A-A-TTGATTTTTTTATTTTCATAGTTAA-TTTAAT
*** * ** * ** * *
63431264 TAAATTAAATTTTC-CCT-TAAAGAACACTAA---AACCC-T--AAACCACTAAAACCCTAATCC
62 T-AATT-AACCCTCAACTCTAATTAA-ATTAATTTTTCCCTTAAAAAACACTAAAACACTAA-CC
* * * **
63431321 TAAAACAATCAAAA-----ACCCT--AACCTTAAAAAA--C-
123 TAAACCACT-AAAACCTTGATCCTAAAACAATAAAAAACCCT
*
63431353 --CC-T---AAA---T----CCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
1 AACCTTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAAT
* *
63431405 TAACCCTCAACTCTAATTAAATTAAATTTTCCCTTAAAGAACACTAAAACACTAAAACCCTAAAC
66 TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACACT--AA-CCTAAAC
* * *
63431470 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCT
128 CACTAAAACCTTGATCCTAAAACAATAAAAAACCCT
* *
63431506 AACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
1 AACCTTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAAT
* *
63431571 TAACCCTCAACTCTAATTAAATTAATTTTTACCTT-AAAAACACTAAAACCCTAA
66 TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACACTAA
63431625 ATTTTAAAAA
Statistics
Matches: 583, Mismatches: 103, Indels: 115
0.73 0.13 0.14
Matches are distributed among these distances:
135 4 0.01
136 10 0.02
137 20 0.03
138 7 0.01
139 4 0.01
140 7 0.01
142 13 0.02
143 6 0.01
144 11 0.02
146 1 0.00
148 4 0.01
149 1 0.00
150 11 0.02
151 3 0.01
152 2 0.00
153 3 0.01
155 2 0.00
156 1 0.00
157 121 0.21
158 50 0.09
159 6 0.01
160 8 0.01
161 5 0.01
162 8 0.01
163 24 0.04
164 21 0.04
165 67 0.11
166 163 0.28
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.34
Consensus pattern (163 bp):
AACCTTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAAT
TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACACTAACCTAAACCAC
TAAAACCTTGATCCTAAAACAATAAAAAACCCT
Found at i:63431153 original size:142 final size:142
Alignment explanation
Indices: 63431007--63431301 Score: 511
Period size: 142 Copynumber: 2.1 Consensus size: 142
63430997 CCTAAACTAT
* *
63431007 TAAAACCTTGATCCTAAAACAATAAAAAACCCTAACCTTAAAAAA-CTCTAAACCCTAATTTAAT
1 TAAAACCCTAATCCTAAAACAATAAAAAACCCTAACCTTAAAAAACCT-TAAACCCTAATTTAAT
* * *
63431071 TGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCTTCAACTCTAATTAAATTAATTTTTC
65 TGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTTTC
63431136 CCTTAAAAAACAC
130 CCTTAAAAAACAC
*
63431149 TAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCTTAAACCCTAATTTAATT
1 TAAAACCCTAATCCTAAAACAATAAAAAACCCTAACCTTAAAAAACCTTAAACCCTAATTTAATT
63431214 GATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTTTCC
66 GATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTTTCC
*
63431279 CTTAAAGAACAC
131 CTTAAAAAACAC
63431291 TAAAACCCTAA
1 TAAAACCCTAA
63431302 ACCACTAAAA
Statistics
Matches: 145, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
142 143 0.99
143 2 0.01
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.35
Consensus pattern (142 bp):
TAAAACCCTAATCCTAAAACAATAAAAAACCCTAACCTTAAAAAACCTTAAACCCTAATTTAATT
GATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTTTCC
CTTAAAAAACAC
Found at i:63431205 original size:23 final size:24
Alignment explanation
Indices: 63431136--63431207 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
63431126 TTAATTTTTC
63431136 CCTTAAAAAACACTAAAACCCTAAT
1 CCTTAAAAAAC-CTAAAACCCTAAT
* *
63431161 CC-TAAAACAATCAAAAACCCTAA-
1 CCTTAAAA-AACCTAAAACCCTAAT
*
63431184 CCTTAAAAAACCTTAAACCCTAAT
1 CCTTAAAAAACCTAAAACCCTAAT
63431208 TTAATTGATT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
23 14 0.36
24 21 0.54
25 4 0.10
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.19
Consensus pattern (24 bp):
CCTTAAAAAACCTAAAACCCTAAT
Found at i:63431308 original size:158 final size:158
Alignment explanation
Indices: 63431146--63431674 Score: 857
Period size: 166 Copynumber: 3.3 Consensus size: 158
63431136 CCTTAAAAAA
* *
63431146 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCTTAAACCCTAATTTA
1 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAATTTA
63431211 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
66 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
63431276 TCCCTTAAAGAACACTAAAACCCTAAAC
131 TCCCTTAAAGAACACTAAAACCCTAAAC
63431304 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAATTTA
1 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAATTTA
63431369 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
66 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
63431434 TCCCTTAAAGAACACTAAAACACTAAAACCCTAAAC
131 TCCCTTAAAG--------AACACTAAAACCCTAAAC
63431470 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAATTTA
1 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAATTTA
*
63431535 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTT
66 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
*
63431600 TACCTTAAA-AACACTAAAACCCTAAA-
131 TCCCTTAAAGAACACTAAAACCCTAAAC
*** * * *
63431626 TTTTAAAAACCCTAA-CCTTAAAATAATAAAAAACCCTAACCCTAAAAAA
1 CACT-AAAACCCTAATCC-TAAAACAATCAAAAACCCTAACCTTAAAAAA
63431675 AGGACAAAAC
Statistics
Matches: 351, Mismatches: 10, Indels: 21
0.92 0.03 0.05
Matches are distributed among these distances:
156 3 0.01
157 55 0.16
158 138 0.39
166 155 0.44
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.31
Consensus pattern (158 bp):
CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAATTTA
ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
TCCCTTAAAGAACACTAAAACCCTAAAC
Found at i:63431389 original size:300 final size:307
Alignment explanation
Indices: 63430843--63431674 Score: 1175
Period size: 300 Copynumber: 2.7 Consensus size: 307
63430833 CTAAAACCTT
* * * *
63430843 AAACCACTAAAACCTTGATCCTAAAACAATAAAAAACCTTAACCTT-AAAAACCCTAAATCCTAA
1 AAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAA
* *
63430907 TTTAATTAATTTTTTTTATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAA-TA
66 TTTAATTGA-TTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTA
* * *
63430971 AATTCTTCCCTTAAAAAAACTAAAACCCTAAACTATTAAAACCTTGATCCTAAAACAATAAAAAA
130 AATT-TTCCCTTAAAAACACTAAAACCCTAAACTATTAAAACCCTAATCCTAAAACAATAAAAAA
* *
63431036 CCCTAACCTTAAAAAACTCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAAT
194 CCCTAACCTTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAAT
* *
63431101 TAATTAACCTTCAACTCTAATTAAATT-AA-TTT-TT-C-C-CTTAAA-
259 TAATTAACCCTCAACTCTAATTAAATTAAATTTTCTTACACACTAAAAC
* *
63431143 AAA-CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCTTAAACCCTAA
1 AAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAA
63431207 TTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAA
66 TTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAA
* * *
63431272 ATTTTCCCTTAAAGAACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAAC
131 ATTTTCCCTTAAA-AACACTAAAACCCTAAACTATTAAAACCCTAATCCTAAAACAATAAAAAAC
*
63431337 CCTAACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATT
195 CCTAACCTTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATT
63431402 AATTAACCCTCAACTCTAATTAAATTAAATTTTCCCTTAAAGAACACTAAAACACTAAAACCC
260 AATTAACCCTCAACTCTAATTAAATTAAATTTT--CTT-------AC----ACACTAAAA--C
63431465 TAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTA
1 -AAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTA
63431530 ATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTA
65 ATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTA
* * * *
63431595 ATTTTTACCTTAAAAACACTAAAACCCTAAA-TTTTAAAAACCCTAA-CCTTAAAATAATAAAAA
130 AATTTTCCCTTAAAAACACTAAAACCCTAAACTATT-AAAACCCTAATCC-TAAAACAATAAAAA
*
63431658 ACCCTAACCCTAAAAAA
193 ACCCTAACCTTAAAAAA
63431675 AGGACAAAAC
Statistics
Matches: 474, Mismatches: 29, Indels: 35
0.88 0.05 0.07
Matches are distributed among these distances:
299 99 0.21
300 165 0.35
301 2 0.00
302 3 0.01
305 2 0.00
313 1 0.00
318 1 0.00
319 5 0.01
322 3 0.01
323 58 0.12
324 135 0.28
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.33
Consensus pattern (307 bp):
AAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAA
TTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAA
ATTTTCCCTTAAAAACACTAAAACCCTAAACTATTAAAACCCTAATCCTAAAACAATAAAAAACC
CTAACCTTAAAAAACCCTAAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTA
ATTAACCCTCAACTCTAATTAAATTAAATTTTCTTACACACTAAAAC
Found at i:63431457 original size:8 final size:8
Alignment explanation
Indices: 63431444--63431483 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
63431434 TCCCTTAAAG
63431444 AACACTAA
1 AACACTAA
63431452 AACACTAA
1 AACACTAA
*
63431460 AACCCTAA
1 AACACTAA
*
63431468 ACCACTAA
1 AACACTAA
*
63431476 AACCCTAA
1 AACACTAA
63431484 TCCTAAAACA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.55, C:0.33, G:0.00, T:0.12
Consensus pattern (8 bp):
AACACTAA
Found at i:63431473 original size:16 final size:16
Alignment explanation
Indices: 63431448--63431483 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
63431438 TTAAAGAACA
63431448 CTAAAACACTAAAACC
1 CTAAAACACTAAAACC
*
63431464 CTAAACCACTAAAACC
1 CTAAAACACTAAAACC
63431480 CTAA
1 CTAA
63431484 TCCTAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.53, C:0.33, G:0.00, T:0.14
Consensus pattern (16 bp):
CTAAAACACTAAAACC
Found at i:63431684 original size:25 final size:24
Alignment explanation
Indices: 63431630--63431676 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
63431620 CCTAAATTTT
* * *
63431630 AAAAACCCTAACCTTAAAATAATA
1 AAAAACCCTAACCCTAAAAAAAGA
63431654 AAAAACCCTAACCCTAAAAAAAG
1 AAAAACCCTAACCCTAAAAAAAG
63431677 GACAAAACGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.60, C:0.23, G:0.02, T:0.15
Consensus pattern (24 bp):
AAAAACCCTAACCCTAAAAAAAGA
Found at i:63432037 original size:23 final size:24
Alignment explanation
Indices: 63431968--63432039 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
63431958 TTAATTTTTC
63431968 CCTTAAAAAACACTAAAACCCTAAT
1 CCTTAAAAAAC-CTAAAACCCTAAT
* *
63431993 CC-TAAAACAATCAAAAACCCTAA-
1 CCTTAAAA-AACCTAAAACCCTAAT
*
63432016 CCTTAAAAAACCTTAAACCCTAAT
1 CCTTAAAAAACCTAAAACCCTAAT
63432040 TTAATTGATT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
23 14 0.36
24 21 0.54
25 4 0.10
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.19
Consensus pattern (24 bp):
CCTTAAAAAACCTAAAACCCTAAT
Found at i:63432157 original size:158 final size:156
Alignment explanation
Indices: 63431975--63432340 Score: 590
Period size: 158 Copynumber: 2.3 Consensus size: 156
63431965 TTCCCTTAAA
* *
63431975 AAACACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCTTAAACCCTAAT
1 AAACACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAAT
*
63432040 TTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAATCCTCAACTCTAATTAAATTAAA
66 TTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAA
*
63432105 TTTTCCCTTAAAGAACACTAAAACCCT
131 TTTTACCTTAAA-AACACTAAAACCCT
*
63432132 AAACCACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAA
1 AAA-CACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAA
63432197 TTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAA
65 TTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAA
*
63432262 TTTTTACCTTAAAAACACTAAAACCCT
130 ATTTTACCTTAAAAACACTAAAACCCT
*** * *
63432289 AAATTTTAAAAACCCTAA-CCTTAAAATAATAAAAAACCCTAACCCTAAAAAA
1 AAACACT-AAAACCCTAATCC-TAAAATAATCAAAAACCCTAACCTTAAAAAA
63432341 AAGGACAAAA
Statistics
Matches: 195, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
156 3 0.02
157 59 0.30
158 133 0.68
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (156 bp):
AAACACTAAAACCCTAATCCTAAAATAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAAT
TTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAA
TTTTACCTTAAAAACACTAAAACCCT
Found at i:63432630 original size:666 final size:666
Alignment explanation
Indices: 63431304--63432608 Score: 2416
Period size: 666 Copynumber: 1.9 Consensus size: 666
63431294 AACCCTAAAC
*
63431304 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAATCCTAATTTA
1 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAATTTA
63431369 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
66 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
63431434 TCCCTTAAAGAACACTAAAACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAA
131 TCCCTTAAAG-------AAACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAA
63431499 AAACCCTAACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTT
189 AAACCCTAACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTT
63431564 AATTAATTAACCCTCAACTCTAATTAAATTAATTTTTACCTTAAAAACACTAAAACCCTAAATTT
254 AATTAATTAACCCTCAACTCTAATTAAATTAATTTTTACCTTAAAAACACTAAAACCCTAAATTT
63431629 TAAAAACCCTAACCTTAAAATAATAAAAAACCCTAACCCTAAAAAAAGGACAAAACGCTCCCCCA
319 TAAAAACCCTAACCTTAAAATAATAAAAAACCCTAACCCTAAAAAAAGGACAAAACGCTCCCCCA
* *
63431694 GGGAAGCGTTTTGCTGACACGTACCCTGACTTCGCACTGACGTGGACATGCTTTCGAGAAAAATG
384 GGGAAGCGTTTTGCTGACACGTACCCTGACTTCGCACTGACGTGGACACGCTTTCGAGAAAAATA
* *
63431759 GTCCTTTCCCGTAAATAATAAAAAAGTCAGACCATTTCAGTAAATAACGAAATAAAATGGCTTTT
449 GTCCTTTCCCATAAATAATAAAAAAGTCAGACCATTTCAGTAAATAACGAAATAAAATGACTTTT
63431824 TTAATAAATTGGCCAAAGATGTGCGCAAAAAAAAAAATAGAGAAAAACAAAGTAGCGCACATTAG
514 TTAATAAATTGGCCAAAGATGTGCGC-AAAAAAAAAATAGAGAAAAACAAAGTAGCGCACATTAG
63431889 CTCCCACCAGTGGCAAACACCAATATTTAATTAACTAATATAATATTTAAAACTTCAACTCTAAT
578 CTCCCACCAGTGGCAAACACCAATATTTAATTAACTAATATAATATTTAAAACTTCAACTCTAAT
63431954 TAAATTAATTTTTCCCTTAAAAAA
643 TAAATTAATTTTTCCCTTAAAAAA
*
63431978 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCTTAAACCCTAATTTA
1 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAATTTA
*
63432043 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAATCCTCAACTCTAATTAAATTAAATTT
66 ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
*
63432108 TCCCTTAAAG-AACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAATAATCAAAAACCCT
131 TCCCTTAAAGAAACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCT
63432172 AACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
196 AACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
63432237 TAACCCTCAACTCTAATTAAATTAATTTTTACCTTAAAAACACTAAAACCCTAAATTTTAAAAAC
261 TAACCCTCAACTCTAATTAAATTAATTTTTACCTTAAAAACACTAAAACCCTAAATTTTAAAAAC
63432302 CCTAACCTTAAAATAATAAAAAACCCTAACCCTAAAAAAAAGGACAAAACGCTCCCCCAGGGAAG
326 CCTAACCTTAAAATAATAAAAAACCCTAACCCT-AAAAAAAGGACAAAACGCTCCCCCAGGGAAG
*
63432367 CGTTTTGCTGACACGTACCCTGACTTCGCATTGACGTGGACACGCTTTCGAGAAAAATAGTCCTT
390 CGTTTTGCTGACACGTACCCTGACTTCGCACTGACGTGGACACGCTTTCGAGAAAAATAGTCCTT
*
63432432 TCCTATAAATAATAAAAAAGTCAGACCATTTCAGTAAATAACGAAATAAAATGACTTTTTTAATA
455 TCCCATAAATAATAAAAAAGTCAGACCATTTCAGTAAATAACGAAATAAAATGACTTTTTTAATA
*
63432497 AATTGGCCAAAGATGTGCGC-AAAAAAAAATAGAGAAAAACAAAGTAGCGCACATTAGCTCCTAC
520 AATTGGCCAAAGATGTGCGCAAAAAAAAAATAGAGAAAAACAAAGTAGCGCACATTAGCTCCCAC
63432561 CAGTGGCAAACACCAATATTTAATTAACTAATATAATATTTAAAACTT
585 CAGTGGCAAACACCAATATTTAATTAACTAATATAATATTTAAAACTT
63432609 GAATTTGACA
Statistics
Matches: 619, Mismatches: 11, Indels: 11
0.97 0.02 0.02
Matches are distributed among these distances:
665 91 0.15
666 216 0.35
667 175 0.28
674 137 0.22
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (666 bp):
CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCTAAACCCTAATTTA
ATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATTT
TCCCTTAAAGAAACACTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCT
AACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAAT
TAACCCTCAACTCTAATTAAATTAATTTTTACCTTAAAAACACTAAAACCCTAAATTTTAAAAAC
CCTAACCTTAAAATAATAAAAAACCCTAACCCTAAAAAAAGGACAAAACGCTCCCCCAGGGAAGC
GTTTTGCTGACACGTACCCTGACTTCGCACTGACGTGGACACGCTTTCGAGAAAAATAGTCCTTT
CCCATAAATAATAAAAAAGTCAGACCATTTCAGTAAATAACGAAATAAAATGACTTTTTTAATAA
ATTGGCCAAAGATGTGCGCAAAAAAAAAATAGAGAAAAACAAAGTAGCGCACATTAGCTCCCACC
AGTGGCAAACACCAATATTTAATTAACTAATATAATATTTAAAACTTCAACTCTAATTAAATTAA
TTTTTCCCTTAAAAAA
Found at i:63439073 original size:46 final size:46
Alignment explanation
Indices: 63439007--63439098 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
63438997 ATATTAATGT
63439007 TGTTTAAATCAAACTTGCATGGTTTATAAAGATTCAATAATAATTA
1 TGTTTAAATCAAACTTGCATGGTTTATAAAGATTCAATAATAATTA
* *
63439053 TGTTTAAATTAAACTTGCATGGTTTATGAAGATTCAATAATAATTA
1 TGTTTAAATCAAACTTGCATGGTTTATAAAGATTCAATAATAATTA
63439099 CAAATCATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (46 bp):
TGTTTAAATCAAACTTGCATGGTTTATAAAGATTCAATAATAATTA
Found at i:63442607 original size:27 final size:27
Alignment explanation
Indices: 63442529--63442610 Score: 137
Period size: 27 Copynumber: 3.0 Consensus size: 27
63442519 TTATATTAAT
*
63442529 ATAATTTTAATGTGTCTAGTTTAGAAC
1 ATAATTTTAATGTGTCTAGTTTAGGAC
63442556 ATAATTTTAATGTGTCTAGTTTAGGAC
1 ATAATTTTAATGTGTCTAGTTTAGGAC
* *
63442583 ATAAATTTAATGTGTCTAGTGTAGGAC
1 ATAATTTTAATGTGTCTAGTTTAGGAC
63442610 A
1 A
63442611 AATAGCTGCT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.41
Consensus pattern (27 bp):
ATAATTTTAATGTGTCTAGTTTAGGAC
Found at i:63448596 original size:12 final size:12
Alignment explanation
Indices: 63448579--63448603 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63448569 CAAAAATGTA
63448579 AAAATCATCAAG
1 AAAATCATCAAG
63448591 AAAATCATCAAG
1 AAAATCATCAAG
63448603 A
1 A
63448604 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:63448926 original size:89 final size:89
Alignment explanation
Indices: 63448775--63448940 Score: 305
Period size: 89 Copynumber: 1.9 Consensus size: 89
63448765 ACCTTGGCTG
* *
63448775 TTTGTTTAAATTTCATCTTATGGCCGGCCAACACAATTAAAAAGGGTATAATTGCCCTTTAAAAG
1 TTTGTTTAAAATTCATCTCATGGCCGGCCAACACAATTAAAAAGGGTATAATTGCCCTTTAAAAG
63448840 CCCTCAATTTTAATTTATTGACTA
66 CCCTCAATTTTAATTTATTGACTA
*
63448864 TTTGTTTAAAATTCATCTCATGGCCGGCCAACACAATTAAAAATGGTATAATTGCCCTTTAAAAG
1 TTTGTTTAAAATTCATCTCATGGCCGGCCAACACAATTAAAAAGGGTATAATTGCCCTTTAAAAG
63448929 CCCTCAATTTTA
66 CCCTCAATTTTA
63448941 GTTCTCTAGC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (89 bp):
TTTGTTTAAAATTCATCTCATGGCCGGCCAACACAATTAAAAAGGGTATAATTGCCCTTTAAAAG
CCCTCAATTTTAATTTATTGACTA
Found at i:63455195 original size:79 final size:81
Alignment explanation
Indices: 63455055--63455239 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
63455045 TTGAATGATG
* *
63455055 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
63455119 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
63455134 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATTCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
63455196 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
63455214 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63455240 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:63455253 original size:40 final size:40
Alignment explanation
Indices: 63455056--63455239 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
63455046 TGAATGATGT
* * * *
63455056 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
63455096 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
63455136 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
63455174 TTCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63455215 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63455240 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:63455261 original size:79 final size:79
Alignment explanation
Indices: 63455108--63455262 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
63455098 GGACTAAGAT
* * **
63455108 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
63455173 ATTCGGGTTAAGTC
66 ATTCCGGTTAAGTC
* *
63455187 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
63455250 TATA-TCCGGTTAA
63 TAAATTCCGGTTAA
63455263 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.63
80 22 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATTCCGGTTAAGTC
Found at i:63457748 original size:166 final size:166
Alignment explanation
Indices: 63457474--63457817 Score: 679
Period size: 166 Copynumber: 2.1 Consensus size: 166
63457464 CGACCATGGT
63457474 ACACGCCCGTGTACTAGGCTGTGCCCTCCACACGACTGAGACAAACGGCCGTGTCTCTTCCCGTG
1 ACACGCCCGTGTACTAGGCTGTGCCCTCCACACGACTGAGACAAACGGCCGTGTCTCTTCCCGTG
*
63457539 TGATCCTTCCATGCATTCTGACTTGAAATTTCTAGGTGCAGGGGATATACGGCCATCTCACACGC
66 TGATCCTTCCATGCATTCTAACTTGAAATTTCTAGGTGCAGGGGATATACGGCCATCTCACACGC
63457604 CCATGGGGCTGACTGTGTGCCACACACGGCTTAGAC
131 CCATGGGGCTGACTGTGTGCCACACACGGCTTAGAC
63457640 ACACGCCCGTGTACTAGGCTGTGCCCTCCACACGACTGAGACAAACGGCCGTGTCTCTTCCCGTG
1 ACACGCCCGTGTACTAGGCTGTGCCCTCCACACGACTGAGACAAACGGCCGTGTCTCTTCCCGTG
63457705 TGATCCTTCCATGCATTCTAACTTGAAATTTCTAGGTGCAGGGGATATACGGCCATCTCACACGC
66 TGATCCTTCCATGCATTCTAACTTGAAATTTCTAGGTGCAGGGGATATACGGCCATCTCACACGC
63457770 CCATGGGGCTGACTGTGTGCCACACACGGCTTAGAC
131 CCATGGGGCTGACTGTGTGCCACACACGGCTTAGAC
63457806 ACACGCCCGTGT
1 ACACGCCCGTGT
63457818 GTCTACCCAT
Statistics
Matches: 177, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
166 177 1.00
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.23
Consensus pattern (166 bp):
ACACGCCCGTGTACTAGGCTGTGCCCTCCACACGACTGAGACAAACGGCCGTGTCTCTTCCCGTG
TGATCCTTCCATGCATTCTAACTTGAAATTTCTAGGTGCAGGGGATATACGGCCATCTCACACGC
CCATGGGGCTGACTGTGTGCCACACACGGCTTAGAC
Found at i:63458558 original size:48 final size:46
Alignment explanation
Indices: 63458486--63458804 Score: 194
Period size: 48 Copynumber: 6.8 Consensus size: 46
63458476 AATAAGTTGT
* *
63458486 CGATGCCATGTTCCGGACATGGTCTTACACTGGCTACATCATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-ACATCATC-AGGC
* ** * **
63458534 TGATGCCATGTCCCAGACATGGTCTTACACTATCTC-TCGCATATACTTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT--C--AT-CAGGC
* * * * *
63458584 TGAT-TCATGTCCCAGACAT-GTCTTACACTAGCACAACTTTCA-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATC-ATCAGGC
* *
63458628 CGATG-CATGTCCCAGACA-CGTCTTACACTGGGTATCATCATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GGCA-CATCATC-AGGC
** * * *
63458675 CGATGCCATGT-TTAGACATGGTC-TATACTAGCAC-TCATCTCTATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCA--TC-AGGC
* * *
63458721 TGATGCCATGTCCCAAACATGGTCTTACACTGGCAC-TCATAATTTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCATCA---GGC
63458769 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
63458805 AAGTAATCCG
Statistics
Matches: 212, Mismatches: 37, Indels: 45
0.72 0.13 0.15
Matches are distributed among these distances:
44 31 0.15
45 7 0.03
46 40 0.19
47 42 0.20
48 69 0.33
49 14 0.07
50 8 0.04
51 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCATCAGGC
Found at i:63458771 original size:141 final size:139
Alignment explanation
Indices: 63458507--63458804 Score: 356
Period size: 141 Copynumber: 2.1 Consensus size: 139
63458497 TCCGGACATG
* * *
63458507 GTCTTACACTGGCTACATCATCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTATCTCTC
1 GTCTTACACTGGCTACATCATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTC
* * *
63458572 GCATATACTTGCTGATTCATGTCCCAGACATGTCTTACACTAGCACAACTTTCAGCCGATGCATG
66 -CATATACTTGCTGATCCATGTCCCAAACATGTCTTACACTAGCACAAATTTCAGCCGATGCATG
63458637 TCCCAGACAC
130 TCCCAGACAC
* ** *
63458647 GTCTTACACTGGGTATCATCATCGAGGCCGATGCCATGT-TTAGACATGGTC-TATACTAGCACT
1 GTCTTACACTGGCTA-CATCATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACT
* * *
63458710 -CATCT-CTATGCTGATGCCATGTCCCAAACATGGTCTTACACTGGCACTCATAATTT-GGCCGA
65 CCATATACT-TGCTGAT-CCATGTCCCAAACAT-GTCTTACACTAGCA--CA-AATTTCAGCCGA
*
63458772 TGCATGTCCCAGACAT
124 TGCATGTCCCAGACAC
63458788 GTCTTACACTGGC-ACAT
1 GTCTTACACTGGCTACAT
63458805 AAGTAATCCG
Statistics
Matches: 136, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
136 2 0.01
137 11 0.08
138 13 0.10
139 25 0.18
140 25 0.18
141 56 0.41
142 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (139 bp):
GTCTTACACTGGCTACATCATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTC
CATATACTTGCTGATCCATGTCCCAAACATGTCTTACACTAGCACAAATTTCAGCCGATGCATGT
CCCAGACAC
Found at i:63460402 original size:17 final size:19
Alignment explanation
Indices: 63460360--63460403 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
63460350 ATGAAATTTT
*
63460360 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
63460379 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
63460397 AA-TATTA
1 AATTATTA
63460404 CTGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:63460516 original size:15 final size:15
Alignment explanation
Indices: 63460498--63460526 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
63460488 ATATTTGTAA
63460498 AATTATTATTATTAT
1 AATTATTATTATTAT
63460513 AATTATTATTATTA
1 AATTATTATTATTA
63460527 GATAGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:63462885 original size:26 final size:26
Alignment explanation
Indices: 63462813--63462891 Score: 68
Period size: 26 Copynumber: 2.9 Consensus size: 26
63462803 TTAAAACTGA
* * *
63462813 TAAAATTACTGAAATACCTTTATAGGTG
1 TAAAATTACTGATATACC-CT-TAGGAG
* * *
63462841 GAAAATTTACAGATTTACCCTTAGGAG
1 TAAAA-TTACTGATATACCCTTAGGAG
*
63462868 TAAAATTACTGATATACCCCTAGG
1 TAAAATTACTGATATACCCTTAGG
63462892 GTTAAGGTTG
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
26 16 0.40
27 9 0.22
28 5 0.12
29 10 0.25
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (26 bp):
TAAAATTACTGATATACCCTTAGGAG
Found at i:63464777 original size:26 final size:28
Alignment explanation
Indices: 63464712--63464781 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 28
63464702 TAAATTGTAC
*
63464712 AGCACTAAGTGTGCGAGTTGGAATATGT
1 AGCACTAAGTGTGCGAATTGGAATATGT
*
63464740 AGCACTAAGTGTGCGAATT-GACTATGT
1 AGCACTAAGTGTGCGAATTGGAATATGT
63464767 -GCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
63464782 NNNNNNNNNN
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 15 0.38
27 7 0.17
28 18 0.45
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAATTGGAATATGT
Found at i:63475830 original size:29 final size:29
Alignment explanation
Indices: 63475798--63475855 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
63475788 TAAAAGTAAT
63475798 TCAATTATTATAACATATATAATATAAAC
1 TCAATTATTATAACATATATAATATAAAC
63475827 TCAATTATTATAACATATATAATATAAAC
1 TCAATTATTATAACATATATAATATAAAC
63475856 ATAAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (29 bp):
TCAATTATTATAACATATATAATATAAAC
Found at i:63475856 original size:15 final size:15
Alignment explanation
Indices: 63475809--63475858 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
63475799 CAATTATTAT
63475809 AACATATATAATATA
1 AACATATATAATATA
*
63475824 AAC-TCA-ATTAT-TA
1 AACAT-ATATAATATA
63475837 TAACATATATAATATA
1 -AACATATATAATATA
63475853 AACATA
1 AACATA
63475859 AAATAAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
13 2 0.07
14 9 0.32
15 15 0.54
16 2 0.07
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
AACATATATAATATA
Found at i:63488798 original size:41 final size:40
Alignment explanation
Indices: 63488737--63488836 Score: 96
Period size: 40 Copynumber: 2.5 Consensus size: 40
63488727 AGGTATTCGA
* ** *
63488737 CACTAGGTGTGCGATTTGGAAATAG-TTGCGGTTATAAATA-G
1 CACTAAGTGTGCGAAATGG-AATAGCTT-CGGCTAT-AATAGG
* *
63488778 CACTAAGTGTGCGAAATGGAATAGCTTTGGCTATATTAGG
1 CACTAAGTGTGCGAAATGGAATAGCTTCGGCTATAATAGG
63488818 CACTAAGTGTGCGATAATG
1 CACTAAGTGTGCGA-AATG
63488837 AGGTAGCTTC
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
39 3 0.06
40 25 0.50
41 22 0.44
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (40 bp):
CACTAAGTGTGCGAAATGGAATAGCTTCGGCTATAATAGG
Found at i:63489704 original size:41 final size:41
Alignment explanation
Indices: 63489659--63489739 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
63489649 TAGAGACTAG
63489659 CTGAAATTGGTGTACAAATATGCTTAGTTTGGTGTTTGTAA
1 CTGAAATTGGTGTACAAATATGCTTAGTTTGGTGTTTGTAA
*
63489700 CTGAAATTGGTGTACAAATATGCTTAGTTTGGTTTTTGTA
1 CTGAAATTGGTGTACAAATATGCTTAGTTTGGTGTTTGTA
63489740 GCTTTGACCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.43
Consensus pattern (41 bp):
CTGAAATTGGTGTACAAATATGCTTAGTTTGGTGTTTGTAA
Found at i:63505797 original size:43 final size:44
Alignment explanation
Indices: 63505731--63505903 Score: 144
Period size: 43 Copynumber: 4.0 Consensus size: 44
63505721 AGCTCGTACA
* * * *
63505731 ATGCCAA-AGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACTGTCCCAAACATGGTCTTACACGTAATCAAATATCG
* **
63505774 ATGCC-ACTGTCCCAAACAAGGTCTTACACAAAATCAAATAT-G
1 ATGCCAACTGTCCCAAACATGGTCTTACACGTAATCAAATATCG
* * * * *
63505816 ATGCCGA-TGTCCTAGACATGGTTTTACACGTAAATCATAA-GTCG
1 ATGCCAACTGTCCCAAACATGGTCTTACACGT-AATCA-AATATCG
* *
63505860 ATGCCAAC-GTCCCAAACGTGGTCTTACACGATAA-CACATATCG
1 ATGCCAACTGTCCCAAACATGGTCTTACACG-TAATCAAATATCG
63505903 A
1 A
63505904 ATCCTATGTC
Statistics
Matches: 101, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
42 26 0.26
43 45 0.45
44 29 0.29
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (44 bp):
ATGCCAACTGTCCCAAACATGGTCTTACACGTAATCAAATATCG
Found at i:63505843 original size:42 final size:43
Alignment explanation
Indices: 63505762--63505888 Score: 118
Period size: 44 Copynumber: 3.0 Consensus size: 43
63505752 TCTTACATGT
63505762 AATCAAATATCGATGCCACTGTCCCAAACAAGGTCTTACACAA
1 AATCAAATATCGATGCCACTGTCCCAAACAAGGTCTTACACAA
* * * * *
63505805 AATCAAATAT-GATGCCGA-TGTCCTAGACATGGTTTTACACGTA
1 AATCAAATATCGATGCC-ACTGTCCCAAACAAGGTCTTACAC-AA
* **
63505848 AATCATAA-GTCGATGCCAAC-GTCCCAAACGTGGTCTTACAC
1 AATCA-AATATCGATGCC-ACTGTCCCAAACAAGGTCTTACAC
63505889 GATAACACAT
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
42 24 0.35
43 18 0.26
44 26 0.38
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (43 bp):
AATCAAATATCGATGCCACTGTCCCAAACAAGGTCTTACACAA
Found at i:63506277 original size:8 final size:8
Alignment explanation
Indices: 63506264--63506288 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
63506254 AAATTAGCCC
63506264 TCACATTT
1 TCACATTT
63506272 TCACATTT
1 TCACATTT
63506280 TCACATTT
1 TCACATTT
63506288 T
1 T
63506289 AGTCCCTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:63507438 original size:13 final size:13
Alignment explanation
Indices: 63507420--63507445 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63507410 CTAAACTAAA
63507420 ACAGTTTATTAGT
1 ACAGTTTATTAGT
63507433 ACAGTTTATTAGT
1 ACAGTTTATTAGT
63507446 CGGGCCAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
ACAGTTTATTAGT
Found at i:63508829 original size:28 final size:27
Alignment explanation
Indices: 63508767--63508916 Score: 228
Period size: 27 Copynumber: 5.5 Consensus size: 27
63508757 ATTAAGTCCA
* *
63508767 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAATCAACTCG
63508794 CACACTTAGTGCTACATAATCATACTCG
1 CACACTTAGTGCTACATAATCA-ACTCG
*
63508822 CACACTTAGTGCTACATAGTCAACTCG
1 CACACTTAGTGCTACATAATCAACTCG
*
63508849 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAATC-AACTCG
* *
63508877 CACACTTAGTGCTACATATTCAATTCG
1 CACACTTAGTGCTACATAATCAACTCG
63508904 CACACTTAGTGCT
1 CACACTTAGTGCT
63508917 GCACAATTTA
Statistics
Matches: 116, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 64 0.55
28 52 0.45
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CACACTTAGTGCTACATAATCAACTCG
Found at i:63508851 original size:55 final size:55
Alignment explanation
Indices: 63508767--63508941 Score: 242
Period size: 55 Copynumber: 3.2 Consensus size: 55
63508757 ATTAAGTCCA
* * *
63508767 CACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACTCG
1 CACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCG
* *
63508822 CACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCG
* * * * * *
63508877 CACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACCCG
1 CACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACTCG
63508933 CACACTTAG
1 CACACTTAG
63508942 CGCCAATCTC
Statistics
Matches: 107, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 91 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCG
Found at i:63516818 original size:28 final size:27
Alignment explanation
Indices: 63516754--63516905 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
63516744 TTATTAAGTC
* *
63516754 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
63516781 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
63516809 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
63516836 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
63516864 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
63516891 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63516906 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63516838 original size:55 final size:55
Alignment explanation
Indices: 63516754--63516930 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
63516744 TTATTAAGTC
* * *
63516754 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
63516809 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
63516864 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
63516920 CGCACACTTAG
1 CGCACACTTAG
63516931 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:63519128 original size:41 final size:41
Alignment explanation
Indices: 63519064--63519141 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
63519054 AGCCACTGGT
*
63519064 GGATCCACGGTCGCCAAAAAACCATGCGATCCTCAATCGGC
1 GGATCCACGATCGCCAAAAAACCATGCGATCCTCAATCGGC
* ** *
63519105 GGATCCACGATCGTCAAGCAACCATGTGATCCTCAAT
1 GGATCCACGATCGCCAAAAAACCATGCGATCCTCAAT
63519142 TTCTTCCTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.18
Consensus pattern (41 bp):
GGATCCACGATCGCCAAAAAACCATGCGATCCTCAATCGGC
Found at i:63519430 original size:27 final size:26
Alignment explanation
Indices: 63519400--63519511 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
63519390 GGCAAATCTA
63519400 CAAACCAAGGGTATTTTAGTAATTTTG
1 CAAACCAAGGGTATTTT-GTAATTTTG
*
63519427 CAAACCAATGGTATTTCTGTAATTTTG
1 CAAACCAAGGGTATTT-TGTAATTTTG
*
63519454 -AAAGTCAAGGGTATTTTTGTAATTTTG
1 CAAA-CCAAGGGTA-TTTTGTAATTTTG
* ** * *
63519481 TAAATTAGGGGTATTTTGGTAATTTTA
1 CAAACCAAGGGTATTTT-GTAATTTTG
63519508 CAAA
1 CAAA
63519512 TTGAGAGTAT
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
26 7 0.10
27 59 0.81
28 7 0.10
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (26 bp):
CAAACCAAGGGTATTTTGTAATTTTG
Found at i:63519512 original size:27 final size:28
Alignment explanation
Indices: 63519461--63519627 Score: 184
Period size: 27 Copynumber: 6.2 Consensus size: 28
63519451 TTGAAAGTCA
* **
63519461 AGGGTATTTTTGTAATTTTGTAAATTAG
1 AGGGTATTTTGGTAATTTTACAAATTAG
63519489 -GGGTATTTTGGTAATTTTACAAATT-G
1 AGGGTATTTTGGTAATTTTACAAATTAG
* * *
63519515 AGAGTATTTCGATAATTTTACAAATT-G
1 AGGGTATTTTGGTAATTTTACAAATTAG
* *
63519542 AGGGTATTTTGGTAATTTTAC-AAGTCG
1 AGGGTATTTTGGTAATTTTACAAATTAG
* * *
63519569 AGGGTACTTCGGTAATTTCACAAATTAG
1 AGGGTATTTTGGTAATTTTACAAATTAG
*
63519597 -GGGTATTTTGGTAATTTTACAAACTAG
1 AGGGTATTTTGGTAATTTTACAAATTAG
63519624 -GGGT
1 AGGGT
63519628 GTTTCAGTAA
Statistics
Matches: 117, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.03
27 109 0.93
28 4 0.03
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.41
Consensus pattern (28 bp):
AGGGTATTTTGGTAATTTTACAAATTAG
Found at i:63519637 original size:27 final size:27
Alignment explanation
Indices: 63519570--63519639 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
63519560 TACAAGTCGA
* * *
63519570 GGGTACTTCGGTAATTTCACAAATTAG
1 GGGTATTTCAGTAATTTCACAAACTAG
** *
63519597 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTCACAAACTAG
*
63519624 GGGTGTTTCAGTAATT
1 GGGTATTTCAGTAATT
63519640 CTACCCTACA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTCACAAACTAG
Found at i:63519673 original size:26 final size:27
Alignment explanation
Indices: 63519622--63519675 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
63519612 TTTACAAACT
* *
63519622 AGGGGTGTTTCAGTAATTCTACCCTAC
1 AGGGGTATTTCAGTAATACTACCCTAC
*
63519649 AGGGGTATTTCA-TAATACTAGCCTAC
1 AGGGGTATTTCAGTAATACTACCCTAC
63519675 A
1 A
63519676 TATATGAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (27 bp):
AGGGGTATTTCAGTAATACTACCCTAC
Found at i:63523294 original size:45 final size:45
Alignment explanation
Indices: 63523238--63523329 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
63523228 AAATATGTCA
63523238 AAATAAAATAGCTACGGCTATTAAATATGGTACTAAGTGTGCGAG
1 AAATAAAATAGCTACGGCTATTAAATATGGTACTAAGTGTGCGAG
*
63523283 AAATGAAATAGCTACGGCTATTAAATATGGTACTAAGTGTGCGAG
1 AAATAAAATAGCTACGGCTATTAAATATGGTACTAAGTGTGCGAG
63523328 AA
1 AA
63523330 TATATAGCGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (45 bp):
AAATAAAATAGCTACGGCTATTAAATATGGTACTAAGTGTGCGAG
Found at i:63523530 original size:28 final size:28
Alignment explanation
Indices: 63523499--63523560 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
63523489 TTATGCATCG
*
63523499 AGCAATGAAGTGATAAATGTAACAGGTA
1 AGCAATGAAATGATAAATGTAACAGGTA
* *
63523527 AGCAATGAAATGATAAATGTGATAGGTA
1 AGCAATGAAATGATAAATGTAACAGGTA
63523555 AG-AATG
1 AGCAATG
63523561 TGATGGTACA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.47, C:0.05, G:0.26, T:0.23
Consensus pattern (28 bp):
AGCAATGAAATGATAAATGTAACAGGTA
Found at i:63538893 original size:39 final size:39
Alignment explanation
Indices: 63538852--63539120 Score: 421
Period size: 39 Copynumber: 6.9 Consensus size: 39
63538842 TACCAGTACA
** * *
63538852 AAGCCTGCGGGACTTTAACCCGGATACATTTCCCGCACA
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
63538891 AAGCCTGCGGGACTTTGGCCCAGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
63538930 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
* *
63538969 AAGACTGCGGGACTTTGGCCCGGATACATTTCCAGAACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
63539008 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
* *
63539047 AAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACA
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
* **
63539086 AAGCCTGCGAGACTTTACCCCGGATACATTTCCAG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAG
63539121 TGTCTTGCAT
Statistics
Matches: 212, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 212 1.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
Found at i:63543649 original size:27 final size:27
Alignment explanation
Indices: 63543619--63543796 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
63543609 ATATTGAGCC
* *
63543619 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
63543646 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
63543673 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
63543701 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
63543728 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
63543755 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
63543782 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63543797 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63543731 original size:55 final size:54
Alignment explanation
Indices: 63543619--63543796 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
63543609 ATATTGAGCC
* * * * *
63543619 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
63543673 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
63543728 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
63543782 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63543797 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:63551653 original size:27 final size:27
Alignment explanation
Indices: 63551623--63551800 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
63551613 ATATTGAGCC
* *
63551623 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
63551650 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
63551677 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
63551705 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
63551732 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
63551759 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
63551786 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63551801 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63551735 original size:55 final size:54
Alignment explanation
Indices: 63551623--63551800 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
63551613 ATATTGAGCC
* * * * *
63551623 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
63551677 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
63551732 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
63551786 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63551801 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:63556663 original size:27 final size:26
Alignment explanation
Indices: 63556633--63556799 Score: 163
Period size: 27 Copynumber: 6.2 Consensus size: 26
63556623 GTATTACCCC
* *
63556633 TATGTGATGAAATGACTATTTTGCCGT
1 TATGTGGT-AAATGACTATTTTGCCCT
* * * * **
63556660 TATGCGATAGAATGATTGTTTTTTCCT
1 TATGTGGTA-AATGACTATTTTGCCCT
*
63556687 TATGTGGTAGAATGACTATTTTTCCCT
1 TATGTGGTA-AATGACTATTTTGCCCT
63556714 TATGTGGTAAAATGACTATTTTGCCCT
1 TATGTGGT-AAATGACTATTTTGCCCT
*
63556741 TATGTGGTAAGATGACTATTCTGCCCT
1 TATGTGGTAA-ATGACTATTTTGCCCT
* *
63556768 TATATGGTAAGATGACTATTTTTCCCT
1 TATGTGGTAA-ATGACTATTTTGCCCT
63556795 ATATG
1 -TATG
63556800 ATGTATGTTT
Statistics
Matches: 119, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.03
27 112 0.94
28 4 0.03
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.43
Consensus pattern (26 bp):
TATGTGGTAAATGACTATTTTGCCCT
Found at i:63557092 original size:23 final size:24
Alignment explanation
Indices: 63557066--63557110 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
63557056 TTATCCCCAC
*
63557066 ATGGTGTGTAG-GGCTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
63557089 ATGGAGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
63557111 GTAGGACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.20, C:0.04, G:0.51, T:0.24
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:63557150 original size:18 final size:18
Alignment explanation
Indices: 63557127--63557173 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
63557117 CTTGCATACC
63557127 GTTTATTGTT-TCTACACT
1 GTTTATTGTTAT-TACACT
*
63557145 GTTTATCGTTATTACACT
1 GTTTATTGTTATTACACT
*
63557163 GTTTACTGTTA
1 GTTTATTGTTA
63557174 CTGTAATGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 24 0.96
19 1 0.04
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.53
Consensus pattern (18 bp):
GTTTATTGTTATTACACT
Found at i:63557263 original size:40 final size:40
Alignment explanation
Indices: 63557168--63557287 Score: 104
Period size: 40 Copynumber: 3.0 Consensus size: 40
63557158 ACACTGTTTA
* *
63557168 CTGTTACTG-TAATGGGCCAAGGCCCAAAC-ACATGATTGTTT
1 CTGTTACTGAT-ATGGGCTAAGGCCCAAACTA-AT-ATTGTCT
* * * *
63557209 ATG-TATTGAGATGGGCTAAAGCCCAAACTAATATTGTCT
1 CTGTTACTGATATGGGCTAAGGCCCAAACTAATATTGTCT
* * *
63557248 CTGTTACTGATATGGGCTTAGGCCCAGACT-ATATTTTCT
1 CTGTTACTGATATGGGCTAAGGCCCAAACTAATATTGTCT
63557287 C
1 C
63557288 ACTGTGTGTT
Statistics
Matches: 63, Mismatches: 13, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
39 17 0.27
40 43 0.68
41 3 0.05
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33
Consensus pattern (40 bp):
CTGTTACTGATATGGGCTAAGGCCCAAACTAATATTGTCT
Found at i:63562570 original size:44 final size:44
Alignment explanation
Indices: 63562518--63562634 Score: 179
Period size: 44 Copynumber: 2.8 Consensus size: 44
63562508 ACGATCTTGC
*
63562518 ACAC-TTAGTGCCATCACATTAAACGAAGTTATATCGGTATCGT
1 ACACTTTAGTGCCATCACATTAAACGAAGCTATATCGGTATCGT
63562561 ACACTTTAGTGCCATCACATTAAACGAAGCTATATCGGTATCGT
1 ACACTTTAGTGCCATCACATTAAACGAAGCTATATCGGTATCGT
* *
63562605 ACA-TTTAGTGCC-TCATA-TAATCGAAGCTAT
1 ACACTTTAGTGCCATCACATTAAACGAAGCTAT
63562635 TACAATTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
41 12 0.17
42 4 0.06
43 13 0.19
44 41 0.59
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.31
Consensus pattern (44 bp):
ACACTTTAGTGCCATCACATTAAACGAAGCTATATCGGTATCGT
Found at i:63576713 original size:27 final size:27
Alignment explanation
Indices: 63576652--63576705 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63576642 TCATACATCT
*
63576652 CATAGGGGCATAACACTCACTTTATCA
1 CATAGGGGCATAACACTCACTTTACCA
* * *
63576679 CATAGGGGCATAATAGTCATTTTACCA
1 CATAGGGGCATAACACTCACTTTACCA
63576706 GTTAGGGGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (27 bp):
CATAGGGGCATAACACTCACTTTACCA
Found at i:63579915 original size:79 final size:78
Alignment explanation
Indices: 63579815--63580037 Score: 229
Period size: 79 Copynumber: 2.8 Consensus size: 78
63579805 GCTCCTCGTT
*
63579815 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCC-A
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGA
63579879 GATTTAGTAACTCGCA
64 -ATTTAGTAACTCGCA
* * **
63579895 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTC-AGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACCCG
*
63579958 AATTTAGTATCTCGCA
63 AATTTAGTAACTCGCA
* * * * * *
63579974 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAACCCG
63580038 GACATCATTC
Statistics
Matches: 120, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
78 5 0.04
79 62 0.52
80 41 0.34
81 11 0.09
82 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGAAT
TTAGTAACTCGCA
Found at i:63580039 original size:40 final size:39
Alignment explanation
Indices: 63579815--63580039 Score: 217
Period size: 40 Copynumber: 5.7 Consensus size: 39
63579805 GCTCCTCGTT
* *
63579815 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
* * * *
63579855 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
63579895 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAT-TCGCA
* * * *
63579934 CAAATGCCTTC-AGATCTTAGTCCGAATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAT-TCGCA
* * *
63579974 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-A-TTCGCA
63580015 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63580040 CATCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 29 0.18
40 113 0.72
41 12 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTATTCGCA
Found at i:63589141 original size:24 final size:23
Alignment explanation
Indices: 63589064--63589145 Score: 85
Period size: 22 Copynumber: 3.6 Consensus size: 23
63589054 CTGAGCTGAT
* * *
63589064 AAACAATAAGCTCATACAAGCTG
1 AAACAGTAAGCTCAAACGAGCTG
*
63589087 -AACAATAAGCTCAAACGAGCTG
1 AAACAGTAAGCTCAAACGAGCTG
* * *
63589109 AAACGGTAAGCTCCAATGAGCTG
1 AAACAGTAAGCTCAAACGAGCTG
63589132 AAAACAGTAAGCTC
1 -AAACAGTAAGCTC
63589146 TTTTGAGCTA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
22 20 0.40
23 18 0.36
24 12 0.24
ACGTcount: A:0.44, C:0.22, G:0.18, T:0.16
Consensus pattern (23 bp):
AAACAGTAAGCTCAAACGAGCTG
Found at i:63589154 original size:24 final size:23
Alignment explanation
Indices: 63589082--63589145 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
63589072 AGCTCATACA
* * *
63589082 AGCTG-AACAATAAGCTCAAACG
1 AGCTGAAACAGTAAGCTCCAATG
*
63589104 AGCTGAAACGGTAAGCTCCAATG
1 AGCTGAAACAGTAAGCTCCAATG
63589127 AGCTGAAAACAGTAAGCTC
1 AGCTG-AAACAGTAAGCTC
63589146 TTTTGAGCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 5 0.14
23 18 0.51
24 12 0.34
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.16
Consensus pattern (23 bp):
AGCTGAAACAGTAAGCTCCAATG
Found at i:63591966 original size:23 final size:22
Alignment explanation
Indices: 63591923--63591966 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
63591913 GTAAGTTCGT
* *
63591923 ATAATAATAAATTTAATCAATC
1 ATAATAATAAATTCAACCAATC
*
63591945 ATAATTATACAATTCAACCAAT
1 ATAATAATA-AATTCAACCAAT
63591967 TAAATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (22 bp):
ATAATAATAAATTCAACCAATC
Found at i:63591996 original size:17 final size:18
Alignment explanation
Indices: 63591957--63591997 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
63591947 AATTATACAA
63591957 TTCAACCAATTAAATATT
1 TTCAACCAATTAAATATT
*
63591975 TTCAACCAATTGAATA-T
1 TTCAACCAATTAAATATT
63591992 TTCAAC
1 TTCAAC
63591998 ATATAACTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (18 bp):
TTCAACCAATTAAATATT
Found at i:63601659 original size:41 final size:41
Alignment explanation
Indices: 63601607--63601685 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
63601597 AACATGACTG
* *
63601607 TGTGTCACACACGGCTAAGACACACGC-CGGTGTCTCTAATC
1 TGTGTCACACACAGCTAAGACACACACTC-GTGTCTCTAATC
* *
63601648 TGTGTCCCACACAGCTGAGACACACACTCGTGTCTCTA
1 TGTGTCACACACAGCTAAGACACACACTCGTGTCTCTA
63601686 CCCGTGTGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 32 0.97
42 1 0.03
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (41 bp):
TGTGTCACACACAGCTAAGACACACACTCGTGTCTCTAATC
Found at i:63603385 original size:39 final size:40
Alignment explanation
Indices: 63603290--63603485 Score: 197
Period size: 39 Copynumber: 5.0 Consensus size: 40
63603280 ACTTGAAACC
* ** **
63603290 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGCGAGACCTTAAGTCCGGATAT
* * * * * *
63603329 AATACCAGCTCAAAGCCTGCGAGA-CTTTAGCCCGGACAT
1 AATTCCAGCACATAGCCTGCGAGACCTTAAGTCCGGATAT
* *
63603368 ATTTCCAGCACGTAGCCTGC-AGACCTTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGAGACCTTAAGTCCGGATAT
* *
63603407 AATTCCAACACATAGCCTGCG-GACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGAGACCTTAAGTCCGGATAT
*
63603446 AATTCCAGCACATAGCCTGCG-GACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGAGACCTTAAGTCCGGATAT
63603485 A
1 A
63603486 CATCACTGAA
Statistics
Matches: 133, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
38 18 0.14
39 115 0.86
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (40 bp):
AATTCCAGCACATAGCCTGCGAGACCTTAAGTCCGGATAT
Found at i:63606774 original size:46 final size:46
Alignment explanation
Indices: 63606724--63606848 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 46
63606714 TGAGCATCCA
* *
63606724 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
* *
63606770 AACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
* *
63606816 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63606849 GCGGGTTAGA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
Found at i:63607862 original size:212 final size:212
Alignment explanation
Indices: 63607495--63607923 Score: 565
Period size: 212 Copynumber: 2.0 Consensus size: 212
63607485 CATAAAATAG
** * * * * *
63607495 ATTCAGACAGCAACAGTGATGTGAGTTTGAAAAATCATTAAAAATAGTAGAGATACAATTAGATG
1 ATTCAGACAGCAACAGTGACATGAATTTGAAAAATCACTAAAAATAGTAGAAATACAATTAAATA
* * *
63607560 ATGAATAAAATATGGAATTGAAGAATTATGAGTCTATTTTCATAAGGATGGAACAAAACAGGTAT
66 ATGAATAAAATATGGAATCGAAGAATGATGAGTCTATTTTCATAAGGAAGGAACAAAACAGGTAT
* * * *
63607625 ATAAGTTATATTTTATGAGATGTTTAAGTTTTTGTGAAACAGGTCCAGAGCGATTTCTGGATCCC
131 ATAAGCTATATTATATGAGATGTTTAAATTTTTGTGAAACAGGGCCAGAGCGATTTCTGGATCCC
*
63607690 CTGTTCTGACTTTGGAA
196 CTATTCTGACTTTGGAA
** * **
63607707 ATTCAGACAGCAGTAGTGACATGAATTTTAAAAATCACTAAAAATAGTAGAAATGGAATTAAATA
1 ATTCAGACAGCAACAGTGACATGAATTTGAAAAATCACTAAAAATAGTAGAAATACAATTAAATA
** ** * *
63607772 ATGAATAAGTTATGGAATCGAAGCCTGATGATTCTATTTTCATATGGAAGAAGAA-AAAA-AGGT
66 ATGAATAAAATATGGAATCGAAGAATGATGAGTCTATTTTCATAAGGAAG--GAACAAAACAGGT
* *
63607835 ATATGAGCTATATTATATGAGATGTTTAAATTTTTTTGAAACAGGGCCAGAGCGATTTCTGGATC
129 ATATAAGCTATATTATATGAGATGTTTAAATTTTTGTGAAACAGGGCCAGAGCGATTTCTGGATC
*
63607900 TCCTATTCTGACTTTGGAA
194 CCCTATTCTGACTTTGGAA
63607919 ATTCA
1 ATTCA
63607924 CCATAAATTT
Statistics
Matches: 186, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
212 179 0.96
213 4 0.02
214 3 0.02
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (212 bp):
ATTCAGACAGCAACAGTGACATGAATTTGAAAAATCACTAAAAATAGTAGAAATACAATTAAATA
ATGAATAAAATATGGAATCGAAGAATGATGAGTCTATTTTCATAAGGAAGGAACAAAACAGGTAT
ATAAGCTATATTATATGAGATGTTTAAATTTTTGTGAAACAGGGCCAGAGCGATTTCTGGATCCC
CTATTCTGACTTTGGAA
Found at i:63609288 original size:5 final size:5
Alignment explanation
Indices: 63609278--63609316 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
63609268 TTCAAAGGGA
63609278 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
63609317 TTGCATATTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:63612546 original size:13 final size:13
Alignment explanation
Indices: 63612530--63612559 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
63612520 TTAATATAAC
*
63612530 ATATATAACTTAT
1 ATATATAAATTAT
63612543 ATATATAAATTAT
1 ATATATAAATTAT
63612556 ATAT
1 ATAT
63612560 CTCTTGACTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
ATATATAAATTAT
Found at i:63614155 original size:43 final size:43
Alignment explanation
Indices: 63614108--63614223 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
63614098 TGAGATTACA
* *
63614108 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTGTGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTA-TATGATTATG
** * *
63614151 TGTAAGACCATGTCTGTAATATTGGCATCGTTATATGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTATG
*
63614194 TGTAAGACTATGTCTGGGACATTGGCATCG
1 TGTAAGACCATGTCTGGGACATTGGCATCG
63614224 ATATGAGATA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
43 60 0.97
44 2 0.03
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTATG
Found at i:63614247 original size:43 final size:42
Alignment explanation
Indices: 63614097--63614244 Score: 145
Period size: 43 Copynumber: 3.5 Consensus size: 42
63614087 GATTACCAAG
*
63614097 ATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
1 ATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
* ** ** *
63614139 ATTGTGATTATGTGTAAGACCATGTCTGTAATATTGGCATCGTT
1 A-TGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
*** *
63614183 AT-ATGATTTTGTGTAAGACTATGTCTGGGACATTGGCATCGAT
1 ATGA-GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
*
63614226 ATGAGATAACATGTAAGAC
1 ATGAGATTACATGTAAGAC
63614245 TATATCTGAG
Statistics
Matches: 84, Mismatches: 18, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 1 0.01
43 80 0.95
44 3 0.04
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.34
Consensus pattern (42 bp):
ATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
Found at i:63618682 original size:29 final size:29
Alignment explanation
Indices: 63618622--63618682 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
63618612 CTCAAGTACA
*
63618622 TTTTATTTTCTTGCATGTTTATTTCTTGT
1 TTTTATTTTCTTGCATGTTTATTTCTTAT
* * *
63618651 TTTTATTTTGTTTCTAT-TTTATTTTTTAT
1 TTTTATTTTCTTGC-ATGTTTATTTCTTAT
63618680 TTT
1 TTT
63618683 GCTTGCTTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 25 0.93
30 2 0.07
ACGTcount: A:0.11, C:0.07, G:0.07, T:0.75
Consensus pattern (29 bp):
TTTTATTTTCTTGCATGTTTATTTCTTAT
Found at i:63623232 original size:46 final size:47
Alignment explanation
Indices: 63623173--63623323 Score: 160
Period size: 53 Copynumber: 3.1 Consensus size: 47
63623163 CATATAATTA
* * *
63623173 CACACTAAAGCCATAGCCCAGCTATGGTCTTACACGG-ATTACATAT
1 CACACTAATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATAT
* * * * *
63623219 CACACTGATGCCATATCCCAGATATAGTCTTATACGGAAGCACATAAT
1 CACACTAATGCCATAGCCCAGCTATGGTCTTATACGGAATCACAT-AT
63623267 CACATCTCTCCAATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAT
1 CACA---CT--AATGCCATAGCCCAGCTATGGTCTTATACGG-AATCACATAT
63623320 CACA
1 CACA
63623324 TGTTGCCATG
Statistics
Matches: 84, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
46 31 0.37
47 5 0.06
48 6 0.07
51 2 0.02
53 33 0.39
54 7 0.08
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (47 bp):
CACACTAATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATAT
Found at i:63625423 original size:21 final size:21
Alignment explanation
Indices: 63625397--63625474 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 21
63625387 ATATATCAAA
63625397 AACTCAGACCACAACTCAATG
1 AACTCAGACCACAACTCAATG
*
63625418 AGCTCAGATGCCACATA-T-ACATG
1 AACTCAGA--CCACA-ACTCA-ATG
*
63625441 AACTCAGACCACAACTCAATC
1 AACTCAGACCACAACTCAATG
* *
63625462 AATTCAGATCACA
1 AACTCAGACCACA
63625475 TAATTCCTAG
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
20 1 0.02
21 26 0.57
22 2 0.04
23 16 0.35
24 1 0.02
ACGTcount: A:0.41, C:0.31, G:0.10, T:0.18
Consensus pattern (21 bp):
AACTCAGACCACAACTCAATG
Found at i:63632282 original size:810 final size:810
Alignment explanation
Indices: 63630600--63633026 Score: 3998
Period size: 810 Copynumber: 3.0 Consensus size: 810
63630590 AGACTGATAT
* * *
63630600 GGAAGTGACTTGCTCATCAGTCTCTTCCTTATATCTCTAGCCTCAGCTTTGGCTCCTT-TTCTTT
1 GGAAGTGACTTGCTCATCAGTCTCTTCCTTATATCTCTAGCCTCAGCTTCGACT-CTTATCCTTT
* * *
63630664 CCTTGGTTAGTTCGTTAGCTTTACAAGCCCGAACCAACGAGCACAACAAATTGCTTCAGCTTAAG
65 CCTTGGTTACTTCGTCAGCTTTACAAGCCCG-ACCAACGAGCACAACAAATTCCTTCAGCTTAAG
63630729 AATACCTACTAACACTCTTATGTCTTCATTAAGCCCATCTTCAAACCTTCTACACATTTTAGCCT
129 AATACCTACTAACACTCTTATGTCTTCATTAAGCCCATCTTCAAACCTTCTACACATTTTAGCCT
* * * *
63630794 CAGAGGATACACATTTTCGAGCATATTTTCTGAGTCTGACATACTCTCTTTCATACTCAGTGACG
194 CGGAGGATACACATTTTTGAGCATATTTTTTGAGTCTGACAAACTCTCTTTCATACTCAGTGACG
* * * *
63630859 GGCATGCGGCCTTGTTTCAAA-CAAAAAATTTCTTGCGCTTTTGATCGATAAATTGCTCACTGAT
259 GACATGCGGCCTTGTTTCAAATCAAGAAATTTCTTACGCTTTTGATCGATAAATCGCTCACTGAT
* * *
63630923 GTATTTCTTTCGAAACTCCTCTTGAAAGAATTCCCATGTGACCTTTTCTCTCGAAACCAACAAAA
324 GTATTTCTTTCGGAACTCCTCTTGAAAGAATTCCCATGTGACCTTTTCTCTCGGAACCAACGAAA
* *
63630988 TCAGTGTCTTCCACCAATGATACGCCACATCCCTCAACAATGAAATAGCACACTTCATACATTCA
389 TCAGCGTCTTCCACCAATGATACGCCACATCCCTCAACAATGAAATAGCACACTTCAGACATTCA
* *
63631053 TCAAGTGTGTAGGACAGCTCATCGAATACCCAAATGCAATTCTCTAACCAAAATTTTGCCCTTTC
454 TCAAGTGTGTAGGACAGCTCATCGAATACCCAAATGGAATTCTCTAGCCAAAATTTTGCCCTTTC
* *
63631118 GGGATCATTATCGGTATTGGCCCTAAATTCCTCAGCTCCTTGCTTTTGAATTCTATCAACTAGGG
519 GGGATCATCATCGGCATTGGCCCTAAATTCCTCAGCTCCTTGCTTTTGAATTCTATCAA--AGGG
* * *
63631183 TTTTATGAAATCTCATAAAATCTATGCCTTGAGGCACTTGAGGTAGGCGTTAGGGATTTGGTAGG
582 TTTTATGAAATCTCATAAAATCTATGCCTTGAGGCACTTGAGGTACGAGTTAGGGATTTGGTGGG
* * *
63631248 GGTGGAGGAGGTTGAGCATTCGGATTCGTTCGAACGAACTCCGTGTACTAGGCATCCATTATTTG
647 GGTGGACGAGGTTGAGCGTTCGGATTCGTTCGAACGAACTCCGTGTACTAGGCATCCATTATGTG
63631313 AAGAAAGGTTTCTCTACCTCATTCTCCTCTACTAATAGTCGTGGGTCTACTATCAGACGGCACTG
712 AAGAAAGGTTTCTCTACCTCATTCTCCTCTACTAATAGTCGTGGGTCTACTATCAGACGGCACTG
*
63631378 CTCCTTCAACGGGAGCAGGCGCATTACCTTCAAC
777 CTCCTTCAACGGGAGCAGGCGCATTACCTTAAAC
* * * * *
63631412 GGAAGTGAATTGCTCATCCGTCTCTTCCTTATATCTCTCGCCTTAGCTTCAACTCTTATCCTTTC
1 GGAAGTGACTTGCTCATCAGTCTCTTCCTTATATCTCTAGCCTCAGCTTCGACTCTTATCCTTTC
*
63631477 CTTGGTTACTTCGTCAGCTTTACAAGCCCGACCAACGAGCACAACAAATTCCTTCTGCTTAAGAA
66 CTTGGTTACTTCGTCAGCTTTACAAGCCCGACCAACGAGCACAACAAATTCCTTCAGCTTAAGAA
* *
63631542 TACCTACTAACACTCTTATGTCTTCATTAAGCCCTTCTTCAAACCTTCTACACATTTTAGCCTTG
131 TACCTACTAACACTCTTATGTCTTCATTAAGCCCATCTTCAAACCTTCTACACATTTTAGCCTCG
* *
63631607 GAGGATACACATTTTTAAGCATATTTTTTGAGTCTGACAAACTCTCTTTCATACTTAGTGACGGA
196 GAGGATACACATTTTTGAGCATATTTTTTGAGTCTGACAAACTCTCTTTCATACTCAGTGACGGA
*
63631672 CATGCGGCCTTGTTTCAAATCAAGAAATTTCTTACGCTTTTGATCGATAAATCGCTCGCTGATGT
261 CATGCGGCCTTGTTTCAAATCAAGAAATTTCTTACGCTTTTGATCGATAAATCGCTCACTGATGT
*
63631737 ATTTCTTTCGGAACTCCTCTTGAAAGAGTTCCCATGTGACCTTTTCTCTCGGAACCAACGAAATC
326 ATTTCTTTCGGAACTCCTCTTGAAAGAATTCCCATGTGACCTTTTCTCTCGGAACCAACGAAATC
* * *
63631802 AACGTCTTCCACCAATGATACGCCGCATCCCTCAACAATGAAATAGCACATTTCAGACATTCATC
391 AGCGTCTTCCACCAATGATACGCCACATCCCTCAACAATGAAATAGCACACTTCAGACATTCATC
* * * * * *
63631867 AGGTATGTAGGATAGCTCATCGAATACCCGAATGGAATTCTCTAGTCAAAATTTTGCCCTTTCGA
456 AAGTGTGTAGGACAGCTCATCGAATACCCAAATGGAATTCTCTAGCCAAAATTTTGCCCTTTCGG
* * *
63631932 GATCATCATCAGCATTGGCCCTAAATTACTCGGCTCCTTGCTTTTGAATTCTATCAAAGGGTTTT
521 GATCATCATCGGCATTGGCCCTAAATTCCTCAGCTCCTTGCTTTTGAATTCTATCAAAGGGTTTT
63631997 ATGAAATCTCATAAAATCTATGCCTTGAGGCACTTGAGGTACGAGTTAGGGATTTGGTGGGGGTG
586 ATGAAATCTCATAAAATCTATGCCTTGAGGCACTTGAGGTACGAGTTAGGGATTTGGTGGGGGTG
*
63632062 GACGAGGTTGAGCGTTCAGATTCGTTCGAACGAACTCCGTGTACTAGGCATCCATTATGTGAAGA
651 GACGAGGTTGAGCGTTCGGATTCGTTCGAACGAACTCCGTGTACTAGGCATCCATTATGTGAAGA
* *
63632127 ATGGTTTCTCTACCTCATTCTCCTCTACTAATAGTCATGGGTCTACTATCAGACGGCACTGCTCC
716 AAGGTTTCTCTACCTCATTCTCCTCTACTAATAGTCGTGGGTCTACTATCAGACGGCACTGCTCC
*
63632192 TTCAACGGGAACAGGCGCATTACCTTAAAC
781 TTCAACGGGAGCAGGCGCATTACCTTAAAC
*
63632222 GGAAGTGACTTGCTCATCGGTCTCTTCCTTATATCTCTAGCCTCAGCTTCGACTCTTATCCTTTC
1 GGAAGTGACTTGCTCATCAGTCTCTTCCTTATATCTCTAGCCTCAGCTTCGACTCTTATCCTTTC
* *
63632287 CTTGGTTACTTCCTCAGCTTTACAAGCCCGACCAATGAGCACAACAAATTCCTTCAGCTTAAGAA
66 CTTGGTTACTTCGTCAGCTTTACAAGCCCGACCAACGAGCACAACAAATTCCTTCAGCTTAAGAA
*
63632352 TACCTACTAACACTCTTATGTCTTCATTAAGCCCGTCTTCAAACCTTCTACACATTTTAGCCTCG
131 TACCTACTAACACTCTTATGTCTTCATTAAGCCCATCTTCAAACCTTCTACACATTTTAGCCTCG
* *
63632417 GAGGATACACATTTTTGAGCAAATTTTTTGAGTCTGACAAACTCTCTTTCATACTCAATGACGGA
196 GAGGATACACATTTTTGAGCATATTTTTTGAGTCTGACAAACTCTCTTTCATACTCAGTGACGGA
* * *
63632482 CATGCAGCCTTGCTTCAAATCAAGAAA-TTCTTTAGGCTTTTGATCGATAAATCGCTCACTGATG
261 CATGCGGCCTTGTTTCAAATCAAGAAATTTC-TTACGCTTTTGATCGATAAATCGCTCACTGATG
*
63632546 TATTTCTTTCGGAACTCCTCTTGAAAGAATTCCCATGTGACATTTTCTCTCGGAACCAACGAAAT
325 TATTTCTTTCGGAACTCCTCTTGAAAGAATTCCCATGTGACCTTTTCTCTCGGAACCAACGAAAT
* *
63632611 CAGCGTCTTCCACCAATGATACGCCATATCCCTCAACAATGAAATAGCACACTTCAGACAATCAT
390 CAGCGTCTTCCACCAATGATACGCCACATCCCTCAACAATGAAATAGCACACTTCAGACATTCAT
* * * *
63632676 CAAGTGTGCAGGACAGCTCATTGAATACCCAAATGGAATTCTCTAGCCAAATTTTTACCCTTTCG
455 CAAGTGTGTAGGACAGCTCATCGAATACCCAAATGGAATTCTCTAGCCAAAATTTTGCCCTTTCG
*
63632741 GGATCATCATCGGCATTGGCCCTAAATTCCTCAGCTCCTTGCTTTTGAATTCCATCAGCTAA-GG
520 GGATCATCATCGGCATTGGCCCTAAATTCCTCAGCTCCTTGCTTTTGAATTCTATCA---AAGGG
* * *
63632805 TTTTATGAAATCTTATAAAATCTATGCCTAGAGGCACTTGAGGTACGGGTTAGGGATTTGGTGGG
582 TTTTATGAAATCTCATAAAATCTATGCCTTGAGGCACTTGAGGTACGAGTTAGGGATTTGGTGGG
* *
63632870 GGTGGACAAGGTTGAGCGTTCGGATTCGTTCGAACGAACTTCGTGTACTAGGCATCCATTATGTG
647 GGTGGACGAGGTTGAGCGTTCGGATTCGTTCGAACGAACTCCGTGTACTAGGCATCCATTATGTG
* * *
63632935 AAGAAAGGTTTCTCTACCTCATTCTCTTCTACTAACAGTCGTGGTTCTACTATCAGACGGCACTG
712 AAGAAAGGTTTCTCTACCTCATTCTCCTCTACTAATAGTCGTGGGTCTACTATCAGACGGCACTG
*
63633000 CTCCTTCAACGGGAGCAGGCACATTAC
777 CTCCTTCAACGGGAGCAGGCGCATTAC
63633027 TTTCAACATC
Statistics
Matches: 1499, Mismatches: 110, Indels: 12
0.92 0.07 0.01
Matches are distributed among these distances:
809 3 0.00
810 755 0.50
811 176 0.12
812 563 0.38
813 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (810 bp):
GGAAGTGACTTGCTCATCAGTCTCTTCCTTATATCTCTAGCCTCAGCTTCGACTCTTATCCTTTC
CTTGGTTACTTCGTCAGCTTTACAAGCCCGACCAACGAGCACAACAAATTCCTTCAGCTTAAGAA
TACCTACTAACACTCTTATGTCTTCATTAAGCCCATCTTCAAACCTTCTACACATTTTAGCCTCG
GAGGATACACATTTTTGAGCATATTTTTTGAGTCTGACAAACTCTCTTTCATACTCAGTGACGGA
CATGCGGCCTTGTTTCAAATCAAGAAATTTCTTACGCTTTTGATCGATAAATCGCTCACTGATGT
ATTTCTTTCGGAACTCCTCTTGAAAGAATTCCCATGTGACCTTTTCTCTCGGAACCAACGAAATC
AGCGTCTTCCACCAATGATACGCCACATCCCTCAACAATGAAATAGCACACTTCAGACATTCATC
AAGTGTGTAGGACAGCTCATCGAATACCCAAATGGAATTCTCTAGCCAAAATTTTGCCCTTTCGG
GATCATCATCGGCATTGGCCCTAAATTCCTCAGCTCCTTGCTTTTGAATTCTATCAAAGGGTTTT
ATGAAATCTCATAAAATCTATGCCTTGAGGCACTTGAGGTACGAGTTAGGGATTTGGTGGGGGTG
GACGAGGTTGAGCGTTCGGATTCGTTCGAACGAACTCCGTGTACTAGGCATCCATTATGTGAAGA
AAGGTTTCTCTACCTCATTCTCCTCTACTAATAGTCGTGGGTCTACTATCAGACGGCACTGCTCC
TTCAACGGGAGCAGGCGCATTACCTTAAAC
Found at i:63636600 original size:27 final size:26
Alignment explanation
Indices: 63636542--63636648 Score: 97
Period size: 27 Copynumber: 4.0 Consensus size: 26
63636532 TGGCTGCCAG
* * *
63636542 AACAGATAATGTGACAGAGTCACTAGA
1 AACAGATAATGTGGCAGAGCCACCA-A
* *
63636569 TACAGATAATCGTAGCAGAGCCACCAA
1 AACAGATAAT-GTGGCAGAGCCACCAA
*
63636596 AACAGATATATGTGGCAGAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAA
** *
63636623 ATTAGATAATTGTGGCATAGCCACCA
1 AACAGATAA-TGTGGCAGAGCCACCA
63636649 GGACGCTTCC
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.02
27 52 0.79
28 13 0.20
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (26 bp):
AACAGATAATGTGGCAGAGCCACCAA
Found at i:63636630 original size:54 final size:54
Alignment explanation
Indices: 63636542--63636648 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
63636532 TGGCTGCCAG
* *
63636542 AACAGATAATGTGACAGAGTCACTAGATACAGATAATCGTAGCAGAGCCACCAA
1 AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTAGCAGAGCCACCAA
* * * * *
63636596 AACAGATATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCACCA
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTAGCAGAGCCACCA
63636649 GGACGCTTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 28 0.62
55 17 0.38
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTAGCAGAGCCACCAA
Found at i:63636817 original size:28 final size:26
Alignment explanation
Indices: 63636754--63636817 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
63636744 AAAAGTAACC
* * *
63636754 CTAGGGGTATAATAGTAATTTTGCAC
1 CTAGGGGTATAACAGTAATTTTCCAA
63636780 CTAGGGGTATAACAGTAATTTTCCATAA
1 CTAGGGGTATAACAGTAATTTTCC--AA
63636808 CTAGGGGTAT
1 CTAGGGGTAT
63636818 TCAAGTAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 22 0.67
28 11 0.33
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.33
Consensus pattern (26 bp):
CTAGGGGTATAACAGTAATTTTCCAA
Found at i:63640462 original size:21 final size:23
Alignment explanation
Indices: 63640436--63640488 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 23
63640426 TTCAAGTATC
*
63640436 CAATTTATTTTCTTT-TT-CATT
1 CAATTTATTTTCTTTATTCCAAT
63640457 CAATTTA-TTTCTTTATTCCAAT
1 CAATTTATTTTCTTTATTCCAAT
*
63640479 CAATTGATTT
1 CAATTTATTT
63640489 GCTACTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 7 0.26
21 9 0.33
22 9 0.33
23 2 0.07
ACGTcount: A:0.25, C:0.15, G:0.02, T:0.58
Consensus pattern (23 bp):
CAATTTATTTTCTTTATTCCAAT
Done.