Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 199 of 295
Found at i:63640488 original size:22 final size:20
Alignment explanation
Indices: 63640444--63640488 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
63640434 TCCAATTTAT
* *
63640444 TTTCTTTTTCATTCAATTTA
1 TTTCTTTTTCAATCAATTGA
63640464 TTTCTTTATTCCAATCAATTGA
1 TTTCTTT-TT-CAATCAATTGA
63640486 TTT
1 TTT
63640489 GCTACTTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 2 0.10
22 12 0.57
ACGTcount: A:0.22, C:0.16, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTCTTTTTCAATCAATTGA
Found at i:63645181 original size:50 final size:50
Alignment explanation
Indices: 63645062--63645495 Score: 406
Period size: 50 Copynumber: 8.6 Consensus size: 50
63645052 ATTGTGAGAA
* * *
63645062 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
* * *
63645114 TACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * *
63645164 CACATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCTGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
** * * * *
63645215 CATGTGTATAGTACTAAGTGCAGCCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
63645265 CACGTGTTTAGTACTAAATGCAGGCTACTACGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * *
63645315 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAAATTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGT
* * * * * *
63645366 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
63645416 CACGTATGTAGTACTAAGTGCAGGTTACTATGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
63645466 CACATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
63645496 TGCGTACACG
Statistics
Matches: 308, Mismatches: 68, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
48 3 0.01
49 5 0.02
50 196 0.64
51 73 0.24
52 31 0.10
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:63645262 original size:101 final size:98
Alignment explanation
Indices: 63645116--63645502 Score: 359
Period size: 101 Copynumber: 3.9 Consensus size: 98
63645106 TTTTAGGTTA
* *
63645116 CATGTG-TAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGCCACATGTGTAGTACTA
1 CATGTGTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTA
* *
63645180 AGTGCAAGCTACTATGCGTACCTGATAGTTTCGAT
66 AGTGCAGGCTACTACGCGTACCTGATAG-TTCG-T
* * * * *
63645215 CATGTGTATAGTACTAAGTGCAGCCTACTACGTGTATCAGATGGTTAGGTCACGTGTTTAGTACT
1 CATGTGT-TAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACT
* * *
63645280 AAATGCAGGCTACTACGTGTACCGGATTGATAGGTCG-
65 AAGTGCAGGCTACTACGCGTACC----TGATAGTTCGT
* * * * * * *
63645317 CATGTG-TAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAAATTCGATCACGTGTGTAGTAC
1 CATGTGTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCACATGTGTAGTAC
** * * * **
63645380 TAAGTGCAGGCTACTACATGTATCAGATGGATAAGT
64 TAAGTGCAGGCTACTACGCGTACCTGATAG-TTCGT
* * * * *
63645416 CACGTATGTAGTACTAAGTGCAGGTTACTATGTGTACCAGATTGATAGGTCACATGTGTAGTACT
1 CATGTGT-TAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACT
*
63645481 AAGTGCAGGCTACTATGCGTAC
65 AAGTGCAGGCTACTACGCGTAC
63645503 ACGAGAGCTT
Statistics
Matches: 231, Mismatches: 44, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
97 4 0.02
98 1 0.00
99 11 0.05
100 62 0.27
101 136 0.59
102 8 0.03
104 3 0.01
105 6 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (98 bp):
CATGTGTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCTGATAGTTCGT
Found at i:63645342 original size:151 final size:151
Alignment explanation
Indices: 63645108--63645502 Score: 583
Period size: 151 Copynumber: 2.6 Consensus size: 151
63645098 TAAGACAGTT
* * * * *
63645108 TTAGGTTACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGCCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
* * ** *
63645173 AGTACTAAGTGCAAGCTACTATGCGTACCTGATAGTTTCGATCATGTGTATAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAAATTCGATCACGTGTATAGTACTAAGTGCAG
*
63645238 CCTACTACGTGTATCAGATGG
131 CCTACTACATGTATCAGATGG
* * * *
63645259 TTAGGTCACGTGTTTAGTACTAAATGCAGGCTACTACGTGTACCGGATTGATAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
* *
63645324 AGTACTAAGTGCAGGCTACTATGCGTACCCGTTAAATTCGATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAAATTCGATCACGTGTATAGTACTAAGTGCAG
*
63645389 GCTACTACATGTATCAGATGG
131 CCTACTACATGTATCAGATGG
* * * * *
63645410 ATAAGTCACGTATGTAGTACTAAGTGCAGGTTACTATGTGTACCAGATTGATAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
63645475 AGTACTAAGTGCAGGCTACTATGCGTAC
66 AGTACTAAGTGCAGGCTACTATGCGTAC
63645503 ACGAGAGCTT
Statistics
Matches: 217, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
151 217 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCCGATAAATTCGATCACGTGTATAGTACTAAGTGCAG
CCTACTACATGTATCAGATGG
Found at i:63645447 original size:24 final size:24
Alignment explanation
Indices: 63645420--63645497 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
63645410 ATAAGTCACG
63645420 TATGTAGTACTAAGTGCAGGTTAC
1 TATGTAGTACTAAGTGCAGGTTAC
* * * *
63645444 TATGT-GTACCAGATTGATAGGTCAC
1 TATGTAGTACTA-AGTG-CAGGTTAC
* *
63645469 ATGTGTAGTACTAAGTGCAGGCTAC
1 -TATGTAGTACTAAGTGCAGGTTAC
63645494 TATG
1 TATG
63645498 CGTACACGAG
Statistics
Matches: 39, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
23 5 0.13
24 11 0.28
25 11 0.28
26 7 0.18
27 5 0.13
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (24 bp):
TATGTAGTACTAAGTGCAGGTTAC
Found at i:63655993 original size:16 final size:16
Alignment explanation
Indices: 63655972--63656003 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63655962 AGAATGGAGT
63655972 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
63655988 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
63656004 CAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:63658732 original size:29 final size:28
Alignment explanation
Indices: 63658678--63658771 Score: 109
Period size: 28 Copynumber: 3.3 Consensus size: 28
63658668 AAAGCATGAT
* * *
63658678 TATGAATGTGATTGGGGCCGATGGGCCA
1 TATGAATGTGATTTGGGCCTAGGGGCCA
63658706 TATGAATGTGATTTGGGCCTAAGGGGCCA
1 TATGAATGTGATTTGGGCCT-AGGGGCCA
* *
63658735 TATGAATGAGA-TTGGACCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAG-GGGCCA
*
63658763 TATGCATGT
1 TATGAATGT
63658772 ATGTAGACTT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
27 2 0.04
28 38 0.67
29 17 0.30
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTTGGGCCTAGGGGCCA
Found at i:63666861 original size:17 final size:18
Alignment explanation
Indices: 63666826--63666861 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
63666816 ATTCTAAGGA
63666826 AAGGTTTTCAATGAAAAC
1 AAGGTTTTCAATGAAAAC
*
63666844 AAGGTTTTTAAT-AAAAC
1 AAGGTTTTCAATGAAAAC
63666861 A
1 A
63666862 CTTCAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGGTTTTCAATGAAAAC
Found at i:63673408 original size:29 final size:29
Alignment explanation
Indices: 63673353--63673475 Score: 144
Period size: 29 Copynumber: 4.3 Consensus size: 29
63673343 AAAGCATGAC
* * *
63673353 TATGAATGTGATTGGGGCC-GATAGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
63673381 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
63673410 TATGAATGTGATTTAGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
** *
63673439 TACAAATAG-GA-TTGGGCCTAGTGGGCCA
1 TATGAAT-GTGATTTGGGCCTAATGGGCCA
*
63673467 TATGCATGT
1 TATGAATGT
63673476 ATGTAGACTT
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 37 0.46
29 42 0.52
30 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:63673422 original size:57 final size:57
Alignment explanation
Indices: 63673353--63673475 Score: 142
Period size: 57 Copynumber: 2.2 Consensus size: 57
63673343 AAAGCATGAC
* * **
63673353 TATGAATGTGATTGGGGCC-GATAGGCCATATGAAT-GTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTGAGGCCTAATAGGCCATACAAATAG-GA-TTGGGCCTAATGGGCCA
* * *
63673410 TATGAATGTGATTTAGGCCTAATGGGCCATACAAATAGGATTGGGCCTAGTGGGCCA
1 TATGAATGTGATTGAGGCCTAATAGGCCATACAAATAGGATTGGGCCTAATGGGCCA
*
63673467 TATGCATGT
1 TATGAATGT
63673476 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
57 41 0.73
58 14 0.25
59 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (57 bp):
TATGAATGTGATTGAGGCCTAATAGGCCATACAAATAGGATTGGGCCTAATGGGCCA
Found at i:63674633 original size:17 final size:18
Alignment explanation
Indices: 63674600--63674633 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63674590 TCTAAGGAAG
63674600 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
63674618 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
63674634 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:63675221 original size:27 final size:27
Alignment explanation
Indices: 63675191--63675253 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
63675181 TAATTTGATG
*
63675191 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
*
63675218 AAATGACTGTTTTGTCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
63675245 AAATGACTG
1 AAATGACTG
63675254 AAATGTCCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.40
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATATGGTA
Found at i:63675260 original size:27 final size:27
Alignment explanation
Indices: 63675206--63675273 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
63675196 ACTGTTTTGC
* ***
63675206 CCTTATGTGGTAAAATGACTGTTTTGT
1 CCTTATATGGTAAAATGACTGAAATGT
63675233 CCTTATATGGTAAAATGACTGAAATGT
1 CCTTATATGGTAAAATGACTGAAATGT
*
63675260 CCTTACATGGTAAA
1 CCTTATATGGTAAA
63675274 TTGGCTGCCT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (27 bp):
CCTTATATGGTAAAATGACTGAAATGT
Found at i:63679332 original size:12 final size:12
Alignment explanation
Indices: 63679311--63679346 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
63679301 GGCAAAAATG
63679311 TAAA-TGTGTTT
1 TAAAGTGTGTTT
63679322 TAAAGTGTGTTT
1 TAAAGTGTGTTT
63679334 TAAAGTGTGTTT
1 TAAAGTGTGTTT
63679346 T
1 T
63679347 GGACTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (12 bp):
TAAAGTGTGTTT
Found at i:63682255 original size:40 final size:40
Alignment explanation
Indices: 63682211--63682345 Score: 148
Period size: 40 Copynumber: 3.4 Consensus size: 40
63682201 CTACTATGTT
* ** *
63682211 TGGCACTTCGTGTGCGTTTTGAGATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGAATTGAGATAGCTTTGGCTATATA
* *
63682251 TGGCACTTAGTGTGCAAATTG-GAATAGCTTTGGATATATA
1 TGGCACTTAGTGTGCGAATTGAG-ATAGCTTTGGCTATATA
* *
63682291 TAGCACTTAGTGTGCGACGTTGAGATAGCTTTGGCTATGA-A
1 TGGCACTTAGTGTGCGA-ATTGAGATAGCTTTGGCTAT-ATA
*
63682332 AGGCACTTAGTGTG
1 TGGCACTTAGTGTG
63682346 TGAGATTATA
Statistics
Matches: 79, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 47 0.59
41 29 0.37
42 2 0.03
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGAATTGAGATAGCTTTGGCTATATA
Found at i:63692416 original size:46 final size:46
Alignment explanation
Indices: 63692349--63692477 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
63692339 TGTAACCCGC
* * * *
63692349 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63692395 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63692441 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63692478 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63692496 original size:46 final size:45
Alignment explanation
Indices: 63692357--63692496 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
63692347 GCCCATAAGC
* ** * *
63692357 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
63692403 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
63692449 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
63692495 GA
1 GA
63692497 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:63704234 original size:358 final size:358
Alignment explanation
Indices: 63703577--63704307 Score: 1408
Period size: 358 Copynumber: 2.0 Consensus size: 358
63703567 GAGAAATTTG
63703577 GATGGTTCCTCCAACCTGCATTGTAAGTATTACTATATGGATTGTTTTGAGATCGAGAATTATTA
1 GATGGTTCCTCCAACCTGCATTGTAAGTATTACTATATGGATTGTTTTGAGATCGAGAATTATTA
*
63703642 CCCATGTAATTTAACTGCTCGTTATCCATGTTGTGGCCATAAGGTTGGTATTCTGAATTGCTTGA
66 CCCATGTAATTTAACTGCTCGTTATCCATGTTGTGCCCATAAGGTTGGTATTCTGAATTGCTTGA
* *
63703707 TCCACCTCCATTTGCTTCACATTGCATTACTGGGTGAACCTGTGAAGAACTAATAAAATCATCAA
131 TCCACCTCCACTTGCTTCACACTGCATTACTGGGTGAACCTGTGAAGAACTAATAAAATCATCAA
63703772 TTTTCTTATTCAAGAGTTCTACCTGATTAGAGAGCATGGTGACCGAATTGACATTATAAACACCG
196 TTTTCTTATTCAAGAGTTCTACCTGATTAGAGAGCATGGTGACCGAATTGACATTATAAACACCG
63703837 GCTGTTTTCATTGGTTTTGTCCTCATGACTTGCCACTAATATTTATTCAGTGACATCTCCTCTAT
261 GCTGTTTTCATTGGTTTTGTCCTCATGACTTGCCACTAATATTTATTCAGTGACATCTCCTCTAT
63703902 AAACCCATAAGCATCTTCAGGTGTTTTATTATT
326 AAACCCATAAGCATCTTCAGGTGTTTTATTATT
63703935 GATGGTTCCTCCAACCTGCATTGTAAGTATTACTATATGGATTGTTTTGAGATCGAGAATTATTA
1 GATGGTTCCTCCAACCTGCATTGTAAGTATTACTATATGGATTGTTTTGAGATCGAGAATTATTA
*
63704000 CCGATGTAATTTAACTGCTCGTTATCCATGTTGTGCCCATAAGGTTGGTATTCTGAATTGCTTGA
66 CCCATGTAATTTAACTGCTCGTTATCCATGTTGTGCCCATAAGGTTGGTATTCTGAATTGCTTGA
63704065 TCCACCTCCACTTGCTTCACACTGCATTACTGGGTGAACCTGTGAAGAACTAATAAAATCATCAA
131 TCCACCTCCACTTGCTTCACACTGCATTACTGGGTGAACCTGTGAAGAACTAATAAAATCATCAA
63704130 TTTTCTTATTCAAGAGTTCTACCTGATTAGAGAGCATGGTGACCGAATTGACATTATAAACACCG
196 TTTTCTTATTCAAGAGTTCTACCTGATTAGAGAGCATGGTGACCGAATTGACATTATAAACACCG
* *
63704195 GTTGTTTTCATTGGTTTTGTCCTCATGATTTGCCACTAATATTTATTCAGTGACATCTCCTCTAT
261 GCTGTTTTCATTGGTTTTGTCCTCATGACTTGCCACTAATATTTATTCAGTGACATCTCCTCTAT
63704260 AAACCCATAAGCATCTTCAGGTGTTTTATTATT
326 AAACCCATAAGCATCTTCAGGTGTTTTATTATT
63704293 GATGGTTCCTCCAAC
1 GATGGTTCCTCCAAC
63704308 AATTGCGTCA
Statistics
Matches: 367, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
358 367 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (358 bp):
GATGGTTCCTCCAACCTGCATTGTAAGTATTACTATATGGATTGTTTTGAGATCGAGAATTATTA
CCCATGTAATTTAACTGCTCGTTATCCATGTTGTGCCCATAAGGTTGGTATTCTGAATTGCTTGA
TCCACCTCCACTTGCTTCACACTGCATTACTGGGTGAACCTGTGAAGAACTAATAAAATCATCAA
TTTTCTTATTCAAGAGTTCTACCTGATTAGAGAGCATGGTGACCGAATTGACATTATAAACACCG
GCTGTTTTCATTGGTTTTGTCCTCATGACTTGCCACTAATATTTATTCAGTGACATCTCCTCTAT
AAACCCATAAGCATCTTCAGGTGTTTTATTATT
Found at i:63708797 original size:21 final size:20
Alignment explanation
Indices: 63708769--63708807 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
63708759 GGATATAATA
63708769 GCCAAGCTTA-ATCATATTTG
1 GCCAAGCTTATAT-ATATTTG
63708789 GCCATAGCTTATATATATT
1 GCCA-AGCTTATATATATT
63708808 CACACATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 11 0.65
22 2 0.12
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (20 bp):
GCCAAGCTTATATATATTTG
Found at i:63710713 original size:64 final size:64
Alignment explanation
Indices: 63710644--63710778 Score: 225
Period size: 64 Copynumber: 2.1 Consensus size: 64
63710634 CTACATTTGG
* * *
63710644 TTAATATGATTTGGTTATGTTTTATATGTGTTAGTAATGGTTTAAAATTAGTTGATGAGTATGT
1 TTAATATGATTTGATTATGTTTTATATGTGTTAGTAATGATTTAAAATTAGTTGATGAGTATAT
*
63710708 TTAATATGATTTGATTATGTTTTATATGTGTTAGTAATGATTTAAAATTAGTTTATGAGTATAT
1 TTAATATGATTTGATTATGTTTTATATGTGTTAGTAATGATTTAAAATTAGTTGATGAGTATAT
63710772 TTGAATA
1 TT-AATA
63710779 AATGTTGAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
64 62 0.94
65 4 0.06
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (64 bp):
TTAATATGATTTGATTATGTTTTATATGTGTTAGTAATGATTTAAAATTAGTTGATGAGTATAT
Found at i:63710763 original size:31 final size:31
Alignment explanation
Indices: 63710664--63710763 Score: 91
Period size: 31 Copynumber: 3.2 Consensus size: 31
63710654 TTGGTTATGT
*
63710664 TTTATATGTGTTAGTAATGGTTTAAAATTAG
1 TTTATATGTGTTAGTAATGATTTAAAATTAG
* *
63710695 TTGATGAGTATGT-TTAAT-ATGATTT--GATTATG
1 TT--T-A-TATGTGTTAGTAATGATTTAAAATTA-G
63710727 TTTTATATGTGTTAGTAATGATTTAAAATTAG
1 -TTTATATGTGTTAGTAATGATTTAAAATTAG
63710759 TTTAT
1 TTTAT
63710764 GAGTATATTT
Statistics
Matches: 54, Mismatches: 5, Indels: 20
0.68 0.06 0.25
Matches are distributed among these distances:
29 5 0.09
30 5 0.09
31 19 0.35
32 2 0.04
33 13 0.24
34 5 0.09
35 5 0.09
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (31 bp):
TTTATATGTGTTAGTAATGATTTAAAATTAG
Found at i:63716385 original size:53 final size:54
Alignment explanation
Indices: 63716304--63716511 Score: 213
Period size: 53 Copynumber: 3.9 Consensus size: 54
63716294 CTTTCCTTTT
* *
63716304 AAACTTACCATTGGCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-
1 AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * * * *
63716357 AAACTCACCATTGCCATG-CATTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AAACTTACCAATGCCATGTC-TTGACATGGTCTTACATGGTATCCTTGCCTTAT-A
* ** * * * * *
63716412 TAGTTTATCAATGCCATGTCTTGACACGGTCTTACATGATTTCCTTGCCTTGTA
1 AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
63716466 AAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
63716512 AAACCCTAAG
Statistics
Matches: 122, Mismatches: 29, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
52 1 0.01
53 46 0.38
54 36 0.30
55 38 0.31
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
AAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:63723040 original size:27 final size:27
Alignment explanation
Indices: 63723009--63723186 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63722999 TAAATTGTAC
*
63723009 AGCACTAAGTGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63723036 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63723062 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63723090 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
63723118 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63723145 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63723172 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63723187 GACTCGATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63723123 original size:82 final size:81
Alignment explanation
Indices: 63723010--63723165 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63723000 AAATTGTACA
* *
63723010 GCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
63723074 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63723091 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
63723156 TGCGAGTTGA
65 TGCGAATTGA
63723166 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 14 0.21
82 52 0.78
83 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63723177 original size:82 final size:81
Alignment explanation
Indices: 63723006--63723186 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63722996 GATTAAATTG
* *
63723006 TACAGCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
63723071 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63723087 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
63723151 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63723169 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63723187 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 17 0.20
82 67 0.80
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63724587 original size:46 final size:46
Alignment explanation
Indices: 63724535--63724697 Score: 174
Period size: 46 Copynumber: 3.5 Consensus size: 46
63724525 GGGGTGTTAC
* *
63724535 AGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCATTG
* * * *
63724581 AGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAGCT-AGTTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCCGAGCTCA-TTG
*
63724628 AGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCATTG
63724674 AGTTGAGTCCGAGTTCACTTATGG
1 AGTTGAGTCCGAGTTCACTTATGG
63724698 GTGGGTTACA
Statistics
Matches: 97, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 51 0.53
47 26 0.27
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (46 bp):
AGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCATTG
Found at i:63731227 original size:27 final size:27
Alignment explanation
Indices: 63731197--63731374 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63731187 ATATTGAGTC
* * * *
63731197 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63731224 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63731251 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63731279 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63731306 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63731333 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63731360 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63731375 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63731336 original size:82 final size:81
Alignment explanation
Indices: 63731218--63731373 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63731208 TGCTATATAA
* *
63731218 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
63731283 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63731300 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63731364 CACTTAGTGC
65 CACTTAGTGC
63731374 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63739405 original size:27 final size:27
Alignment explanation
Indices: 63739375--63739552 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63739365 ATATTGAGTC
* * * *
63739375 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63739402 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63739429 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63739457 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63739484 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63739511 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63739538 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63739553 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63739514 original size:82 final size:81
Alignment explanation
Indices: 63739396--63739551 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63739386 TGCTATATAA
* *
63739396 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
63739461 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63739478 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63739542 CACTTAGTGC
65 CACTTAGTGC
63739552 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63750015 original size:21 final size:22
Alignment explanation
Indices: 63749969--63750026 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
63749959 CATGAACTTG
*
63749969 TTCGACTATGATTTGATAATGA
1 TTCGACTATGATTTGATAACGA
63749991 TTCGAC-AGTGATTTGA-AACGA
1 TTCGACTA-TGATTTGATAACGA
63750012 TTCGACTATGATTTG
1 TTCGACTATGATTTG
63750027 GTATTAGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (22 bp):
TTCGACTATGATTTGATAACGA
Found at i:63757303 original size:35 final size:35
Alignment explanation
Indices: 63757262--63757362 Score: 123
Period size: 35 Copynumber: 2.9 Consensus size: 35
63757252 TATAGGTAAG
*
63757262 TACATGTGAGCTTATATTGAAATTGTATATTCGAC
1 TACATGTGAGCTTATATTGAACTTGTATATTCGAC
* * *
63757297 TGCATGTGAGGTTATATTGAACTTG-AGTATTCGAT
1 TACATGTGAGCTTATATTGAACTTGTA-TATTCGAC
* * *
63757332 TATATGTGAACTTATATTGACCTTGTATATT
1 TACATGTGAGCTTATATTGAACTTGTATATT
63757363 TGGTTATATG
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
34 1 0.02
35 53 0.96
36 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (35 bp):
TACATGTGAGCTTATATTGAACTTGTATATTCGAC
Found at i:63757370 original size:35 final size:35
Alignment explanation
Indices: 63757265--63757375 Score: 100
Period size: 35 Copynumber: 3.2 Consensus size: 35
63757255 AGGTAAGTAC
* * * **
63757265 ATGTGAGCTTATATTGAAATTGTA-TATTCGACTGC
1 ATGTGAACTTATATTGAACTTG-AGTATTCGATTAT
**
63757300 ATGTGAGGTTATATTGAACTTGAGTATTCGATTAT
1 ATGTGAACTTATATTGAACTTGAGTATTCGATTAT
* * *
63757335 ATGTGAACTTATATTGACCTTGTA-TATTTGGTTAT
1 ATGTGAACTTATATTGAACTTG-AGTATTCGATTAT
63757370 ATGTGA
1 ATGTGA
63757376 TGTTATCTTG
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
34 1 0.02
35 62 0.97
36 1 0.02
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (35 bp):
ATGTGAACTTATATTGAACTTGAGTATTCGATTAT
Found at i:63757397 original size:35 final size:34
Alignment explanation
Indices: 63757300--63757454 Score: 93
Period size: 35 Copynumber: 4.4 Consensus size: 34
63757290 ATTCGACTGC
* * *
63757300 ATGTGAGGTTATATTGAACTT-GAGTATTCGATTAT
1 ATGTGATGTTATATTGAA-TTAGA-TATTTGGTTAT
** *
63757335 ATGTGAACTTATATTGACCTT-GTATATTTGGTTAT
1 ATGTGATGTTATATTGA-ATTAG-ATATTTGGTTAT
* * ** *
63757370 ATGTGATGTTATCTTGAA-TATGCATATTCGGCCAA
1 ATGTGATGTTATATTGAATTA-G-ATATTTGGTTAT
*
63757405 ATGTGATGTTCTATTGAATTAGA-ACTTTAGGTTAT
1 ATGTGATGTTATATTGAATTAGATA-TTT-GGTTAT
*
63757440 ATGTGATGTTTTATT
1 ATGTGATGTTATATT
63757455 TGACTTTTAT
Statistics
Matches: 92, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
33 2 0.02
34 3 0.03
35 84 0.91
36 3 0.03
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (34 bp):
ATGTGATGTTATATTGAATTAGATATTTGGTTAT
Found at i:63759019 original size:18 final size:18
Alignment explanation
Indices: 63758993--63759035 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
63758983 GAGACGAGAT
63758993 AAAAAGAAATCGAAAAAG
1 AAAAAGAAATCGAAAAAG
* *
63759011 AACAAGAAATTGAAAAAG
1 AAAAAGAAATCGAAAAAG
63759029 AAAAAGA
1 AAAAAGA
63759036 GAGTGAGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.72, C:0.05, G:0.16, T:0.07
Consensus pattern (18 bp):
AAAAAGAAATCGAAAAAG
Found at i:63761607 original size:42 final size:42
Alignment explanation
Indices: 63761548--63761634 Score: 129
Period size: 42 Copynumber: 2.1 Consensus size: 42
63761538 CTAAACCTGC
* * *
63761548 TGTCCATTGCCGTTACATATATTTAGAGTTCATCAAAAGTCT
1 TGTCCACTACCGTTACATATATTTAGAGTTCATCAAAAGCCT
* *
63761590 TGTCCACTACCGTTACATATGTTTAGAGTTCATTAAAAGCCT
1 TGTCCACTACCGTTACATATATTTAGAGTTCATCAAAAGCCT
63761632 TGT
1 TGT
63761635 AGTTTTAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (42 bp):
TGTCCACTACCGTTACATATATTTAGAGTTCATCAAAAGCCT
Found at i:63765408 original size:28 final size:28
Alignment explanation
Indices: 63765323--63765408 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
63765313 GTGAGCATGA
*
63765323 ATATGAATGTGACTGGGCCTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
63765351 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* * *
63765380 ATATGAATATGATTGGGCTTAATGAGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
63765408 A
1 A
63765409 GATACAGGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 26 0.51
29 25 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:63766941 original size:25 final size:25
Alignment explanation
Indices: 63766913--63766982 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
63766903 CTCTTTTAAT
*
63766913 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
63766938 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
63766963 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
63766983 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:63767295 original size:27 final size:27
Alignment explanation
Indices: 63767185--63767298 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 27
63767175 GGGACAAAAT
* * *
63767185 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
*
63767212 AGTAATTCTA-CCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
63767238 AGTATTTCTACCTTACAAGGGTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63767265 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63767292 GGTAATT
1 GGTAATT
63767299 TTGTAAATTG
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
25 2 0.03
26 20 0.28
27 49 0.69
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:63767313 original size:27 final size:27
Alignment explanation
Indices: 63767283--63767576 Score: 193
Period size: 27 Copynumber: 10.9 Consensus size: 27
63767273 TACCCTATAG
** *
63767283 GGGTATTTCGGTAATTTTGTAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** ** *
63767310 GGGTAAAAT-GGTAATTTTGTAAATCGG
1 GGGT-ATTTCGGTAATTTTACAAATCGA
* *
63767337 GGGTACTTT-GGTAAATTTACAAGTCGA
1 GGGTA-TTTCGGTAATTTTACAAATCGA
* **
63767364 GGGTATTTCAGTAATTTTACAGGTCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
63767391 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
63767417 GGGGTATTTTGGTAATTTTACAAA-CTAA
1 -GGGTATTTCGGTAATTTTACAAATC-GA
* *
63767445 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
63767471 GGGGTATTTTGGTAATTTTATAAAACCAA
1 -GGGTATTTCGGTAATTTTA-CAAATCGA
** * *
63767500 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* ** * *
63767527 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
63767554 TGGTATTTTGGTAATTTTACAAA
1 GGGTATTTCGGTAATTTTACAAA
63767577 CCAGGGGTAT
Statistics
Matches: 227, Mismatches: 31, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.03
27 194 0.85
28 24 0.11
29 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:63767533 original size:82 final size:81
Alignment explanation
Indices: 63767363--63767589 Score: 265
Period size: 82 Copynumber: 2.8 Consensus size: 81
63767353 TTACAAGTCG
** *** * ** * * * * *
63767363 AGGGTATTTCAGTAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAAAAACCAAGGGTATTTTA
*
63767428 GTAATTTTACAAACTA
66 GTAATTTTACAAACCA
*
63767444 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAACCAAGGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTA-AAAACCAAGGGTATTTT
63767509 AGTAATTTTACAAACCA
65 AGTAATTTTACAAACCA
** * * *
63767526 AGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAAAAACCAAGGGTATTTT
63767590 GGTGATTTGG
Statistics
Matches: 124, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
81 52 0.42
82 72 0.58
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAAAAACCAAGGGTATTTTA
GTAATTTTACAAACCA
Found at i:63767543 original size:109 final size:109
Alignment explanation
Indices: 63767390--63767597 Score: 335
Period size: 109 Copynumber: 1.9 Consensus size: 109
63767380 TTACAGGTCG
* * *
63767390 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTG
1 AGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
63767455 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAACCA
66 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAACCA
* * ** *
63767499 AGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTG
1 AGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
*
63767564 GTAATTTTACAAACCAGGGGTATTTTGGTGATTT
66 GTAATTTTACAAACCAGGGGTATTTTGGTAATTT
63767598 GGTAAACTAA
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
109 90 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (109 bp):
AGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG
GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAACCA
Found at i:63767604 original size:27 final size:27
Alignment explanation
Indices: 63767337--63767597 Score: 288
Period size: 27 Copynumber: 9.6 Consensus size: 27
63767327 TGTAAATCGG
* * ** *
63767337 GGGTACTTTGGTAAATTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** *** *
63767364 GGGTATTTCAGTAATTTTACAGGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * * *
63767391 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
63767418 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
63767445 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
63767472 GGGTATTTTGGTAATTTTATAAAACCAA
1 GGGTATTTTGGTAATTTTA-CAAACCAA
*
63767500 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
**
63767527 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
63767554 TGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
63767581 GGGTATTTTGGTGATTT
1 GGGTATTTTGGTAATTT
63767598 GGTAAACTAA
Statistics
Matches: 202, Mismatches: 31, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
27 178 0.88
28 24 0.12
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:63772098 original size:28 final size:29
Alignment explanation
Indices: 63771988--63772098 Score: 104
Period size: 29 Copynumber: 3.9 Consensus size: 29
63771978 GTAAGCATGA
* *
63771988 ATATGAATGTGA-CTGGG-TCTAACGGGCC
1 ATATGAATGTGATTTGGGCT-TAATGGGCC
* * *
63772016 ATATAAATGTGATTTGGGCATAATAGGCC
1 ATATGAATGTGATTTGGGCTTAATGGGCC
* *
63772045 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCTTAATGGGCC
*
63772074 ATATGAATATGA-TTGGGCTTAATGG
1 ATATGAATGTGATTTGGGCTTAATGG
63772099 ACCAGATATA
Statistics
Matches: 68, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 24 0.35
29 43 0.63
30 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCTTAATGGGCC
Found at i:63773360 original size:17 final size:18
Alignment explanation
Indices: 63773338--63773382 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
63773328 ATCGATGATA
63773338 ATGGGCCCACGAC-CT-AT
1 ATGGGCCCAC-ACGCTCAT
63773355 ATGGGCCCACACGCTCAT
1 ATGGGCCCACACGCTCAT
63773373 AT-GGCCCACA
1 ATGGGCCCACA
63773383 TAGCCCAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 2 0.08
17 20 0.77
18 4 0.15
ACGTcount: A:0.24, C:0.38, G:0.22, T:0.16
Consensus pattern (18 bp):
ATGGGCCCACACGCTCAT
Found at i:63779282 original size:14 final size:15
Alignment explanation
Indices: 63779245--63779286 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
63779235 AAATACGAAC
63779245 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
63779261 TATA-ATGTGATA-G
1 TATATATGTGAAATG
63779274 TATATATGTGAAA
1 TATATATGTGAAA
63779287 GACTAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:63786676 original size:26 final size:27
Alignment explanation
Indices: 63786625--63786679 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
63786615 AGAAAGAAAG
*
63786625 AAAAAAATATAGCTTATGGTATTTGAC
1 AAAAAAATATAGCTTAGGGTATTTGAC
63786652 AAAAAAATATAGCTTAGGGTA-TTGAC
1 AAAAAAATATAGCTTAGGGTATTTGAC
63786678 AA
1 AA
63786680 TTTGGAAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.47, C:0.07, G:0.16, T:0.29
Consensus pattern (27 bp):
AAAAAAATATAGCTTAGGGTATTTGAC
Found at i:63788968 original size:39 final size:40
Alignment explanation
Indices: 63788811--63789033 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
63788801 GCTCCTCGTT
* * *
63788811 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
63788851 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
63788891 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
63788931 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
63788970 CAAATGCCTTC-GGATCTTAGTCCGGATAT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
63789010 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
63789034 CATCATTCAA
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 18 0.11
39 41 0.25
40 104 0.63
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:63788995 original size:79 final size:80
Alignment explanation
Indices: 63788811--63789033 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
63788801 GCTCCTCGTT
* * *
63788811 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
63788875 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
*
63788891 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
63788955 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * * *
63788970 CAAATGCCTTC-GGATCTTAGTCCGGATAT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
63789031 GGA
64 GGA
63789034 CATCATTCAA
Statistics
Matches: 128, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
77 9 0.07
78 20 0.16
79 49 0.38
80 48 0.38
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:63796924 original size:40 final size:40
Alignment explanation
Indices: 63796840--63797023 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
63796830 TTGAATGCTG
* * * *
63796840 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
63796879 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
63796920 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
63796960 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
63797000 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63797024 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:63796977 original size:80 final size:81
Alignment explanation
Indices: 63796840--63797020 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
63796830 TTGAATGCTG
* *
63796840 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
63796904 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
63796920 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
63796981 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
63797000 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
63797021 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:63804856 original size:40 final size:40
Alignment explanation
Indices: 63804772--63804955 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
63804762 TTGAATGCTG
* * * *
63804772 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
63804811 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
63804852 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
63804892 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
63804932 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63804956 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:63804909 original size:80 final size:81
Alignment explanation
Indices: 63804772--63804952 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
63804762 TTGAATGCTG
* *
63804772 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
63804836 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
63804852 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
63804913 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
63804932 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
63804953 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:63819062 original size:17 final size:18
Alignment explanation
Indices: 63819035--63819068 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
63819025 AATTAAATAT
63819035 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
63819053 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
63819069 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:63820616 original size:80 final size:80
Alignment explanation
Indices: 63820522--63820702 Score: 228
Period size: 80 Copynumber: 2.3 Consensus size: 80
63820512 TCGTTCAACT
* *
63820522 GCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-A
1 GCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATA
*
63820584 TTAGT-A-TCTCGCACAAA
64 -TAGTCACT-TAGCACAAA
**
63820601 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATAT
1 -GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGGATAT
63820666 AGTCACTTAGCACAAA
65 AGTCACTTAGCACAAA
*
63820682 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
63820703 CAACATTCAA
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 7 0.08
80 72 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:63820662 original size:40 final size:40
Alignment explanation
Indices: 63820521--63820702 Score: 201
Period size: 40 Copynumber: 4.5 Consensus size: 40
63820511 CTCGTTCAAC
* *
63820521 TGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAA
* *
63820561 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
*
63820601 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
** * * *
63820641 TGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA
1 TGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACAAA
*
63820682 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
63820703 CAACATTCAA
Statistics
Matches: 122, Mismatches: 14, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
Found at i:63834447 original size:46 final size:45
Alignment explanation
Indices: 63834393--63834517 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 45
63834383 CTCGTAGCCA
* * **
63834393 ATGCATGTCCCATACATGTCTTACACTAGCTTACGTCTCGAGGGCG
1 ATGCATGTCCCAAACATGTCTTACACTAGCTT-CGTCTCAAGACCG
* * * *
63834439 ATGCATGTCCCAGACATGCCTTACACTAGCACTCGTCTCAATACCG
1 ATGCATGTCCCAAACATGTCTTACACTAGC-TTCGTCTCAAGACCG
63834485 ATGCCATGTCCCAAACATGGTCTTACACTAGCT
1 ATG-CATGTCCCAAACAT-GTCTTACACTAGCT
63834518 CTCATAATGT
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
46 40 0.61
47 14 0.21
48 12 0.18
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (45 bp):
ATGCATGTCCCAAACATGTCTTACACTAGCTTCGTCTCAAGACCG
Found at i:63834535 original size:94 final size:94
Alignment explanation
Indices: 63834300--63834567 Score: 257
Period size: 94 Copynumber: 2.9 Consensus size: 94
63834290 AGACATCGAC
* * *
63834300 GCCATGTCCCATACATGGTTTTACACAAG-TCT-AGTATATTTGTGCCGATGCCATGTCCCAGAC
1 GCCATGTCCCATACATGGTCTTACACTAGCTCTCA-TA-ATGTG-GCCGATG-CATGTCCCAGAC
*
63834363 ATGGTCTTACACT-G-ACACATCTCGTAGCCAAT
62 AT-GTCTTACACTAGCACACATCTCATAGCCAAT
* * * *
63834395 G-CATGTCCCATACAT-GTCTTACACTAGCT-TACGT-CTCGAGGGCGATGCATGTCCCAGACAT
1 GCCATGTCCCATACATGGTCTTACACTAGCTCT-CATAAT-GTGGCCGATGCATGTCCCAGACAT
* * * *
63834456 GCCTTACACTAGCACTCGTCTCAATA-CCGAT
64 GTCTTACACTAGCACACATCTC-ATAGCCAAT
* *
63834487 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCTAGACATGT
1 GCCATGTCCCATACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGT
* *
63834552 CTTATACTAGCTCACA
66 CTTACACTAGCACACA
63834568 CAAGTGACCC
Statistics
Matches: 139, Mismatches: 23, Indels: 23
0.75 0.12 0.12
Matches are distributed among these distances:
90 9 0.06
91 15 0.11
92 19 0.14
93 27 0.19
94 66 0.47
95 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (94 bp):
GCCATGTCCCATACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGT
CTTACACTAGCACACATCTCATAGCCAAT
Found at i:63849526 original size:40 final size:39
Alignment explanation
Indices: 63849489--63849711 Score: 220
Period size: 40 Copynumber: 5.6 Consensus size: 39
63849479 GCTACTCGTT
* *
63849489 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTT-TAGTAACTCGCA
*
63849529 CAAATGCCTTCGGGACTTAACCCGGATTTAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
* *
63849569 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCG-GTTTAGTAACTCGCA
* ** *
63849609 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCG-GTTTAGTAACTCGCA
** * * *
63849648 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGTTTA-GTAAC-TCGCA
*
63849688 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
63849712 ACATCATTCA
Statistics
Matches: 159, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
38 4 0.03
39 50 0.31
40 103 0.65
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCA
Found at i:63849601 original size:80 final size:79
Alignment explanation
Indices: 63849456--63849712 Score: 254
Period size: 79 Copynumber: 3.3 Consensus size: 79
63849446 AAATCACGTA
* * * * ** * *
63849456 CCTTCGGAATTTAA-CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGATT-TAG
63849520 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
63849535 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGAATTTAG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCG-ATTTAG
*
63849600 TAACTCGTACAAATG
65 TAACTCGCACAAATG
* * * * * * *
63849615 CCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATAT-
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAAATGCCTTCGGGA-CTTAG-CCCGATTTA
* *
63849677 GTCACTTAGCACAAA-G
64 GTAAC-TCGCACAAATG
*
63849693 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
63849713 CATCATTCAA
Statistics
Matches: 150, Mismatches: 22, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
78 16 0.11
79 67 0.45
80 65 0.43
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGATTTAGT
AACTCGCACAAATG
Found at i:63849651 original size:39 final size:40
Alignment explanation
Indices: 63849489--63849660 Score: 240
Period size: 40 Copynumber: 4.3 Consensus size: 40
63849479 GCTACTCGTT
* * *
63849489 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGAATT-TAGTAACTCGCA
* *
63849529 CAAATGCCTTCGGGACTTAACCCGGATTTAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
*
63849569 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
* * *
63849609 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
63849648 CAAATGCCTTCGG
1 CAAATGCCTTCGG
63849661 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 34 0.28
40 84 0.70
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
Found at i:63859653 original size:44 final size:43
Alignment explanation
Indices: 63859603--63859689 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 43
63859593 CTCTAGCAGT
* *
63859603 AGTATTACTCGATCTTGCATTTTGAAAATTATCTTTTTCAACAA
1 AGTATTACTCAATCTTGCAATTTGAAAATTATC-TTTTCAACAA
63859647 AGTATTACTCAATCTTGCAATTTGAAAATTATCTTTTCAACAA
1 AGTATTACTCAATCTTGCAATTTGAAAATTATCTTTTCAACAA
63859690 TTTCAGGGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 10 0.24
44 31 0.76
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.41
Consensus pattern (43 bp):
AGTATTACTCAATCTTGCAATTTGAAAATTATCTTTTCAACAA
Found at i:63862321 original size:40 final size:40
Alignment explanation
Indices: 63862163--63862307 Score: 177
Period size: 40 Copynumber: 3.6 Consensus size: 40
63862153 TGAATGATGT
* * * * *
63862163 CCGGGCCAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
63862203 CCAGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
63862243 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63862283 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63862308 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 81 0.90
41 8 0.09
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:63870358 original size:40 final size:40
Alignment explanation
Indices: 63870200--63870344 Score: 195
Period size: 40 Copynumber: 3.6 Consensus size: 40
63870190 TGAATGATGT
* * * * *
63870200 CCGGGCCAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
63870240 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
63870280 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63870320 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63870345 AACGAGTAGC
Statistics
Matches: 94, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
39 1 0.01
40 85 0.90
41 8 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:63881868 original size:27 final size:27
Alignment explanation
Indices: 63881829--63881896 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
63881819 TGAATCAGAA
* *
63881829 TGCTCACATGAGCTATGAAAATGGGTC
1 TGCTCACACGAGCTATGAAAATGGGCC
63881856 TGCTCACACGAGCTATGAAAATGGGCC
1 TGCTCACACGAGCTATGAAAATGGGCC
*
63881883 TGTTCACACGAGCT
1 TGCTCACACGAGCT
63881897 GTGGGTCGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (27 bp):
TGCTCACACGAGCTATGAAAATGGGCC
Found at i:63897222 original size:24 final size:24
Alignment explanation
Indices: 63897172--63897363 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
63897162 GCTTTATCAT
*
63897172 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
63897197 ATAGCTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
63897221 ATAGCTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
63897245 ATAACTGGGGCAGAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63897269 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
63897293 ATAACTGGGGCAGAAGGCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63897317 ATAACTGGGGCAGAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63897341 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63897364 GCACTTCCTC
Statistics
Matches: 153, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
24 142 0.93
25 11 0.07
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63897439 original size:20 final size:20
Alignment explanation
Indices: 63897414--63897479 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
63897404 TATGAATACC
63897414 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
63897434 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
63897454 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
63897474 CCATGT
1 TCATGT
63897480 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:63897444 original size:11 final size:11
Alignment explanation
Indices: 63897414--63897468 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
63897404 TATGAATACC
63897414 TCATGTGCATA
1 TCATGTGCATA
*
63897425 TCA--TACATA
1 TCATGTGCATA
63897434 TCATGTGCATA
1 TCATGTGCATA
* *
63897445 TCA--TACATG
1 TCATGTGCATA
63897454 TCATGTGCATA
1 TCATGTGCATA
63897465 TCAT
1 TCAT
63897469 ACATACCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:63905382 original size:24 final size:24
Alignment explanation
Indices: 63905328--63905518 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
63905318 GCTTTATCAT
*
63905328 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
63905353 AAAACTAGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63905377 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63905401 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
63905425 ATAACT-GGGCAGAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
63905448 ATAACTGGGGCAGAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63905472 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63905496 ATAACTGAGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63905519 GCACTTCATC
Statistics
Matches: 152, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
23 22 0.14
24 120 0.79
25 10 0.07
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63905597 original size:20 final size:20
Alignment explanation
Indices: 63905569--63905632 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 20
63905559 TATGAATACC
*
63905569 TCATATGCATATCATACATA
1 TCATGTGCATATCATACATA
*
63905589 TCATGTGCATATCATGCA-A
1 TCATGTGCATATCATACATA
*
63905608 -AATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
63905627 CCATGT
1 TCATGT
63905633 TTATCAAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 15 0.41
19 2 0.05
20 20 0.54
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:63905701 original size:25 final size:25
Alignment explanation
Indices: 63905669--63905716 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63905659 ATATATAAAC
* * *
63905669 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63905694 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63905717 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63906244 original size:14 final size:15
Alignment explanation
Indices: 63906209--63906248 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
63906199 CACCTGTTTT
63906209 ACGATAT-TCCT-CG
1 ACGATATCTCCTACG
*
63906222 ACGAGATCTCCTACG
1 ACGATATCTCCTACG
63906237 -CGATATCTCCTA
1 ACGATATCTCCTA
63906249 TAATCAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 6 0.26
14 15 0.65
15 2 0.09
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.28
Consensus pattern (15 bp):
ACGATATCTCCTACG
Found at i:63935446 original size:27 final size:27
Alignment explanation
Indices: 63935416--63935593 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63935406 ATATTGAGTC
* * * *
63935416 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63935443 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63935470 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63935498 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63935525 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63935552 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63935579 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63935594 GTACAAATTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63935555 original size:82 final size:81
Alignment explanation
Indices: 63935437--63935592 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63935427 TGCTATATAA
* *
63935437 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
63935502 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63935519 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63935583 CACTTAGTGC
65 CACTTAGTGC
63935593 TGTACAAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63942653 original size:27 final size:27
Alignment explanation
Indices: 63942623--63942800 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
63942613 ATATTGAGTC
* *
63942623 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
63942650 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
63942677 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
63942705 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
63942732 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
63942759 CGTACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
63942786 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63942801 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63942766 original size:82 final size:81
Alignment explanation
Indices: 63942644--63942799 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
63942634 TGCTATATAA
* *
63942644 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
63942709 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
63942726 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGTACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63942790 CACTTAGTGC
65 CACTTAGTGC
63942800 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63947371 original size:25 final size:26
Alignment explanation
Indices: 63947330--63947382 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
63947320 TCTCTTGAAA
*
63947330 TTCAATTTTATTTAATTACTTAAT-TT
1 TTCAATTTTATTGAATTA-TTAATATT
63947356 TTCAA-TTTATTGAATTATTAATATT
1 TTCAATTTTATTGAATTATTAATATT
63947381 TT
1 TT
63947383 ATACTAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 5 0.20
25 15 0.60
26 5 0.20
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (26 bp):
TTCAATTTTATTGAATTATTAATATT
Found at i:63957798 original size:22 final size:23
Alignment explanation
Indices: 63957773--63957816 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
63957763 TAACATGTTG
63957773 AATTTTAATTAATTTT-ATAATA
1 AATTTTAATTAATTTTGATAATA
*
63957795 AATTTTGATTAATTTTGATAAT
1 AATTTTAATTAATTTTGATAAT
63957817 TTTTAATAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
AATTTTAATTAATTTTGATAATA
Found at i:63962964 original size:40 final size:40
Alignment explanation
Indices: 63962909--63962989 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
63962899 CCATGAATGC
63962909 TGAGATTACTGGAGTTTCATATTTTTCGATTATGACTATT
1 TGAGATTACTGGAGTTTCATATTTTTCGATTATGACTATT
*
63962949 TGAGATTACTGGAGTTTCATATTTTTTGATTATGACTATT
1 TGAGATTACTGGAGTTTCATATTTTTCGATTATGACTATT
63962989 T
1 T
63962990 ACTATGAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.25, C:0.09, G:0.17, T:0.49
Consensus pattern (40 bp):
TGAGATTACTGGAGTTTCATATTTTTCGATTATGACTATT
Found at i:63967728 original size:21 final size:22
Alignment explanation
Indices: 63967689--63967729 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
63967679 TCGGCCTCGC
*
63967689 ATGGTCTCGTTTCGAGTCATGG
1 ATGGTCTCGTTTCCAGTCATGG
*
63967711 ATGG-CTCGTTTCCTGTCAT
1 ATGGTCTCGTTTCCAGTCAT
63967730 AATCATGGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.12, C:0.22, G:0.27, T:0.39
Consensus pattern (22 bp):
ATGGTCTCGTTTCCAGTCATGG
Found at i:63969404 original size:63 final size:65
Alignment explanation
Indices: 63969300--63969433 Score: 173
Period size: 63 Copynumber: 2.1 Consensus size: 65
63969290 TTCAGGTTAG
** *
63969300 TTTCATTATTAATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATTT-AATTTCTCCAT
1 TTTCATTATTAATTTTCATTTTGGAGAAAACCACAACCATTTCCAAAAGATTTCAATTTCTCCAT
* * * * * *
63969364 TTTCATT-TTCATTTTCATTTTGGAGAAAACTATAACCATTTCCAAAAGTTTTCCATTTCTCTAT
1 TTTCATTATTAATTTTCATTTTGGAGAAAACCACAACCATTTCCAAAAGATTTCAATTTCTCCAT
63969428 TTTCAT
1 TTTCAT
63969434 CATTTTATTC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
63 38 0.63
64 22 0.37
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (65 bp):
TTTCATTATTAATTTTCATTTTGGAGAAAACCACAACCATTTCCAAAAGATTTCAATTTCTCCAT
Found at i:63980761 original size:40 final size:40
Alignment explanation
Indices: 63980564--63980747 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
63980554 TGAATGATGT
* * * *
63980564 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
63980604 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
63980644 TCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63980682 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63980723 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63980748 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:63980769 original size:79 final size:79
Alignment explanation
Indices: 63980616--63980770 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
63980606 GGACTAAGAT
** **
63980616 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
63980681 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
63980695 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
63980758 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
63980771 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:63988915 original size:40 final size:40
Alignment explanation
Indices: 63988767--63988950 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
63988757 TTGAATGATG
* * * *
63988767 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
63988807 TCCGGACTAAGAT-CC-AAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
63988846 TCCGGGCTAAG-CCTGAAGGTATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63988885 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63988926 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63988951 AACTAGTAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 52 0.43
40 65 0.54
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63988972 original size:79 final size:79
Alignment explanation
Indices: 63988822--63988982 Score: 175
Period size: 79 Copynumber: 2.0 Consensus size: 79
63988812 ACTAAGATCC
* * * **
63988822 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCTGAAGGTATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
*
63988887 CGGGTTAAGTCCCG
66 CGGGTTAAATCCCG
* * * *
63988901 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACTAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAA
*
63988964 ATCC-GGTTAAATTCCG
63 ATCCGGGTTAAATCCCG
63988980 AAG
1 AAG
63988983 TACGTGATTT
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.66
80 21 0.31
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAATCCCG
Found at i:64007588 original size:40 final size:40
Alignment explanation
Indices: 64007529--64007755 Score: 312
Period size: 40 Copynumber: 5.7 Consensus size: 40
64007519 TGAATACATT
* * * *
64007529 CGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-TATATC
*
64007569 CGGGCTAAGACCCGGAGGCATTTGTGCAAGTTGATATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATC
64007609 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATC
* * *
64007649 CGGGCTAAGACCCGAAGGCATTTCTGCGAGATGATATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATC
* * * *
64007689 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACC
1 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATC
* *
64007729 CGGGTTAAGACCCGAAGGCAATTGTGC
1 CGGGCTAAGACCCGAAGGCATTTGTGC
64007756 TTGTGGTTAT
Statistics
Matches: 169, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 166 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATC
Found at i:64015878 original size:39 final size:40
Alignment explanation
Indices: 64015765--64015949 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
64015755 TTGAATGATG
* * * *
64015765 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
64015805 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
64015845 TCCGGGCTAAG-CCTGAAGGTATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64015884 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64015925 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64015950 AACTAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 32 0.26
40 79 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64015980 original size:79 final size:79
Alignment explanation
Indices: 64015821--64015980 Score: 173
Period size: 79 Copynumber: 2.0 Consensus size: 79
64015811 CTAAGATCCA
* * * **
64015821 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCTGAAGGTATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
*
64015886 CGGGTTAAGTCCCG
66 CGGGTTAAATCCCG
* * * *
64015900 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACTAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAA
*
64015963 ATCC-GGTTAAATTCCG
63 ATCCGGGTTAAATCCCG
64015979 AA
1 AA
64015981 AGTACGTGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 44 0.66
80 21 0.31
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAATCCCG
Found at i:64026908 original size:25 final size:23
Alignment explanation
Indices: 64026880--64026936 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 23
64026870 TATCGATCAG
64026880 GATGCTCGCAG-GAACTATATAACAA
1 GATGCTCG-AGAG-ACT-TATAACAA
*
64026905 GATGCTCGAGAGGCTTATAACAA
1 GATGCTCGAGAGACTTATAACAA
64026928 GATTGCTCG
1 GA-TGCTCG
64026937 TCTGAGCTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 10 0.34
24 10 0.34
25 9 0.31
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (23 bp):
GATGCTCGAGAGACTTATAACAA
Found at i:64031966 original size:40 final size:40
Alignment explanation
Indices: 64031904--64031981 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
64031894 AGTCACTGTG
** * *
64031904 CGATTCGACATAGCTTTGGCTATATATGGCACTTAGTGTA
1 CGATTCGACATAGCTTCAGCTATATACGCCACTTAGTGTA
* * *
64031944 CGATTTGAGATAGCTTCAGCTATGTACGCCACTTAGTG
1 CGATTCGACATAGCTTCAGCTATATACGCCACTTAGTG
64031982 CATGAAATAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.33
Consensus pattern (40 bp):
CGATTCGACATAGCTTCAGCTATATACGCCACTTAGTGTA
Found at i:64032019 original size:28 final size:28
Alignment explanation
Indices: 64031973--64032036 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
64031963 CTATGTACGC
**
64031973 CACTTAGTGCATGAAATATCGAGTGTGG
1 CACTTAGTGCATGAAATATCGAGTGTAA
** * *
64032001 CACTTAGTGTGTGAGATATTGAGTGTAA
1 CACTTAGTGCATGAAATATCGAGTGTAA
64032029 CACTTAGT
1 CACTTAGT
64032037 TTGCGAGGCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
CACTTAGTGCATGAAATATCGAGTGTAA
Found at i:64035141 original size:27 final size:27
Alignment explanation
Indices: 64035111--64035288 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
64035101 ATATTGAGCC
* *
64035111 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
64035138 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
64035165 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
64035193 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
64035220 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
64035247 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
64035274 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64035289 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:64035223 original size:55 final size:54
Alignment explanation
Indices: 64035111--64035288 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
64035101 ATATTGAGCC
* * * * *
64035111 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
64035165 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
64035220 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
64035274 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64035289 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:64043137 original size:27 final size:27
Alignment explanation
Indices: 64043107--64043284 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
64043097 ATATTGAGCC
* *
64043107 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
64043134 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
64043161 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
64043189 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
64043216 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
64043243 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
64043270 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64043285 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:64043219 original size:55 final size:54
Alignment explanation
Indices: 64043107--64043284 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
64043097 ATATTGAGCC
* * * * *
64043107 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
64043161 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
64043216 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
64043270 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64043285 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:64051455 original size:27 final size:27
Alignment explanation
Indices: 64051393--64051485 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
64051383 AATACTTTAG
* * *
64051393 TTTACTAAATTACTAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTTGA
* ** *
64051420 CTTGTAAAATTACCAAAGTACCCTTGA
1 TTTACAAAATTACCAAAATACCCTTGA
* ****
64051447 TTTACAAAATTATCGTTTTACCCTTGA
1 TTTACAAAATTACCAAAATACCCTTGA
64051474 TTTACAAAATTA
1 TTTACAAAATTA
64051486 TTGAAATACC
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTGA
Found at i:64051495 original size:27 final size:27
Alignment explanation
Indices: 64051425--64051495 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
64051415 CTCGACTTGT
*
64051425 AAAATTA-CCAAAGTACCCTTGATTTAC
1 AAAATTATCGAAA-TACCCTTGATTTAC
***
64051452 AAAATTATCGTTTTACCCTTGATTTAC
1 AAAATTATCGAAATACCCTTGATTTAC
*
64051479 AAAATTATTGAAATACC
1 AAAATTATCGAAATACC
64051496 TCTGTAGGGT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.35
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTTGATTTAC
Found at i:64051509 original size:27 final size:27
Alignment explanation
Indices: 64051479--64051620 Score: 185
Period size: 27 Copynumber: 5.3 Consensus size: 27
64051469 CTTGATTTAC
*
64051479 AAAATTATTGAAATACCTCTGTAGGGT
1 AAAATTATTGAAATACCCCTGTAGGGT
*
64051506 AAAATTATTGAATTACCCCTGTAGGGT
1 AAAATTATTGAAATACCCCTGTAGGGT
*
64051533 AGAATTATTGAAATACCCCTGTAGGGT
1 AAAATTATTGAAATACCCCTGTAGGGT
* **
64051560 AAAAATACCGAAATACCCCTGTAGGGT
1 AAAATTATTGAAATACCCCTGTAGGGT
* * * * *
64051587 AGAATTACTGAGATACCCTTGTGGGGT
1 AAAATTATTGAAATACCCCTGTAGGGT
64051614 AAAATTA
1 AAAATTA
64051621 CCATTTTTCC
Statistics
Matches: 100, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (27 bp):
AAAATTATTGAAATACCCCTGTAGGGT
Found at i:64052188 original size:22 final size:22
Alignment explanation
Indices: 64052136--64052191 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
64052126 GCCAATTATT
*
64052136 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGCACCAAC
* *
64052158 CT-ACATATGGCTTTGTACCAAC
1 CTGA-TTATGGCTTTGCACCAAC
64052180 CTGATTATGGCT
1 CTGATTATGGCT
64052192 GTGTGCCGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGCACCAAC
Found at i:64052466 original size:6 final size:6
Alignment explanation
Indices: 64052456--64052571 Score: 76
Period size: 6 Copynumber: 18.8 Consensus size: 6
64052446 TTGCATTCAC
* * * * *
64052456 ATTCTG GTTCTG ATTCTG -TTACCTG ATACTG ATTCTG TTTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
64052506 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
64052555 ATTCTC ATTATG ATTCT
1 ATTCTG ATTCTG ATTCT
64052572 AGTTTTGATA
Statistics
Matches: 84, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
5 4 0.05
6 70 0.83
7 7 0.08
8 3 0.04
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:64052491 original size:25 final size:25
Alignment explanation
Indices: 64052463--64052523 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
64052453 CACATTCTGG
* *
64052463 TTCTGATTCTGTTACCTGATACTGA
1 TTCTGATTCTGTCACCTAATACTGA
* *
64052488 TTCTGTTTCTGTCACCTAATTCTGA
1 TTCTGATTCTGTCACCTAATACTGA
64052513 TTCTGATTCTG
1 TTCTGATTCTG
64052524 ATTCTGATTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.16, C:0.21, G:0.15, T:0.48
Consensus pattern (25 bp):
TTCTGATTCTGTCACCTAATACTGA
Found at i:64052519 original size:37 final size:37
Alignment explanation
Indices: 64052478--64052571 Score: 143
Period size: 37 Copynumber: 2.5 Consensus size: 37
64052468 ATTCTGTTAC
*
64052478 CTGATACTGATTCTGTTTCTGTCACCTAATTCTGATT
1 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
*
64052515 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
* * *
64052552 CTGATTCTCATTATGATTCT
1 CTGATACTGATTCTGATTCT
64052572 AGTTTTGATA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.47
Consensus pattern (37 bp):
CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:64054060 original size:40 final size:40
Alignment explanation
Indices: 64053977--64054192 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
64053967 CAACCAAGTA
** *
64053977 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
64054015 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64054055 CCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
* *
64054095 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
64054135 CCTTCGGGGCTT-GCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
64054174 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64054193 TTATCATCCA
Statistics
Matches: 155, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 16 0.10
39 42 0.27
40 94 0.61
41 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64054108 original size:80 final size:78
Alignment explanation
Indices: 64053977--64054196 Score: 293
Period size: 80 Copynumber: 2.8 Consensus size: 78
64053967 CAACCAAGTA
* *
64053977 CCTTCGGGGTTTAG-CCGGATATAGCTACTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGGGCTTAGCCCGGATATAG-TACTGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
*
64054041 AACTCGCACAAATG
65 AACTCGCAAAAATG
* *
64054055 CCTTCGGGACTTAGCCCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGGCTTAGCCCGGATATAGTAC-T-GCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
64054120 TAACTCGTAAAAATG
64 TAACTCGCAAAAATG
* *
64054135 CCTTCGGGGCTT-GCCC-GAAACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGGCTTAGCCCGGATA-TAGT-ACT-GCACAAATGCCTTCGGGACTTAGCCCGGTTAT
64054197 CATCCAAATA
Statistics
Matches: 126, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
78 18 0.14
79 50 0.40
80 58 0.46
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (78 bp):
CCTTCGGGGCTTAGCCCGGATATAGTACTGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
ACTCGCAAAAATG
Found at i:64059955 original size:42 final size:42
Alignment explanation
Indices: 64059843--64059980 Score: 136
Period size: 42 Copynumber: 3.2 Consensus size: 42
64059833 AGGATTTCGA
** *
64059843 TATATGATTTTGTGTAAGACCAC-GTCTGGGATTTTGGCATCG
1 TATATGATTTTGTGTAAGACC-CTGTCTGGGACATTGGAATCG
* * *
64059885 -ATTTGAGATTTATGTGTAAGACCATGTCTGGGACATTGGAATTG
1 TATAT--GATTT-TGTGTAAGACCCTGTCTGGGACATTGGAATCG
* *
64059929 TATATGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 TATATGATTTTGTGTAAGACCCTGTCTGGGACATTGGAATCG
*
64059971 ATATTTGATT
1 -TATATGATT
64059981 ACATGTAAGA
Statistics
Matches: 78, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
41 3 0.04
42 28 0.36
43 18 0.23
44 26 0.33
45 3 0.04
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (42 bp):
TATATGATTTTGTGTAAGACCCTGTCTGGGACATTGGAATCG
Found at i:64059991 original size:43 final size:42
Alignment explanation
Indices: 64059899--64059992 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
64059889 GAGATTTATG
* * ***
64059899 TGTAAGACCATGTCTGGGACATTGGAATTGTATATGATTTTG
1 TGTAAGACCATGTCTGGGACAGTGGAATCGTATATGATTACA
* * *
64059941 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGAATCG-TATATGATTACA
64059984 TGTAAGACC
1 TGTAAGACC
64059993 TCGTTTGGGA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 26 0.60
43 17 0.40
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGTGGAATCGTATATGATTACA
Found at i:64065475 original size:13 final size:13
Alignment explanation
Indices: 64065457--64065481 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64065447 TGTTTGAAAT
64065457 AAAAAGAAAATTC
1 AAAAAGAAAATTC
64065470 AAAAAGAAAATT
1 AAAAAGAAAATT
64065482 AGTACGAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.16
Consensus pattern (13 bp):
AAAAAGAAAATTC
Found at i:64068767 original size:23 final size:22
Alignment explanation
Indices: 64068716--64068767 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
64068706 CCTCGTCTTT
*
64068716 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
64068738 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
64068761 TTCTTTT
1 TTCTTTT
64068768 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:64068782 original size:18 final size:18
Alignment explanation
Indices: 64068761--64068799 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
64068751 TTTCTTCAAC
* *
64068761 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
64068779 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
64068797 TTC
1 TTC
64068800 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:64074332 original size:42 final size:42
Alignment explanation
Indices: 64074235--64074333 Score: 126
Period size: 42 Copynumber: 2.4 Consensus size: 42
64074225 AGGGTAGGAC
* *
64074235 AGACACAGCCGTGTGAAAGTCTCACATACCCATGTGCCCATG
1 AGACACAGCTGTGTGAAAGTCTCACATACCCATGTGCCCACG
** * * *
64074277 AGACGTAGTTGTGTGAAAGTCTCACATGCCCGTGTGCCCACG
1 AGACACAGCTGTGTGAAAGTCTCACATACCCATGTGCCCACG
*
64074319 GGACACAGCTGTGTG
1 AGACACAGCTGTGTG
64074334 TCTAGAGACA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (42 bp):
AGACACAGCTGTGTGAAAGTCTCACATACCCATGTGCCCACG
Found at i:64093440 original size:38 final size:39
Alignment explanation
Indices: 64093342--64093524 Score: 192
Period size: 40 Copynumber: 4.7 Consensus size: 39
64093332 TCGAATGATG
* * *
64093342 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* * *
64093381 TCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
64093420 TTCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
64093459 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
64093499 ACCGGGCTATGTCTCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64093525 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
38 20 0.17
39 44 0.37
40 54 0.46
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:64103073 original size:39 final size:40
Alignment explanation
Indices: 64102973--64103157 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
64102963 TCGAATGATG
* * *
64102973 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
64103012 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
64103053 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
64103092 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
64103131 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
64103158 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:64103109 original size:79 final size:81
Alignment explanation
Indices: 64102974--64103157 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
64102964 CGAATGATGT
*
64102974 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
64103038 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * * * **
64103054 TCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
* *
64103116 TGTGTGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
64103133 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
64103158 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 31 0.35
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:64103179 original size:79 final size:79
Alignment explanation
Indices: 64103026--64103190 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
64103016 GGACTAAGAT
** **
64103026 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
64103091 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
64103105 CCGAAGGCATTTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
64103168 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
64103184 CCGAAGG
1 CCGAAGG
64103191 TATGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:64103502 original size:96 final size:96
Alignment explanation
Indices: 64103382--64103741 Score: 611
Period size: 96 Copynumber: 3.8 Consensus size: 96
64103372 AAGGGTTGGT
*
64103382 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
64103447 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
64103478 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
64103543 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
64103574 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
64103637 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
64103668 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
64103732 -ATGTGATAAG
66 TATGTGATAAG
64103742 TCCCGAAGGG
Statistics
Matches: 253, Mismatches: 9, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
94 96 0.38
95 1 0.00
96 156 0.62
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:64103512 original size:47 final size:47
Alignment explanation
Indices: 64103382--64103741 Score: 576
Period size: 47 Copynumber: 7.6 Consensus size: 47
64103372 AAGGGTTGGT
*
64103382 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
64103429 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATA--TGATAAGGCCTAATGGCCGATGTGATG
64103478 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
64103525 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATA--TGATAAGGCCTAATGGCCGATGTGATG
64103574 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
*
64103621 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
64103668 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
* * *
64103715 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATATGATAAG
64103742 TCCCGAAGGG
Statistics
Matches: 297, Mismatches: 12, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
47 203 0.68
49 94 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
Found at i:64103916 original size:37 final size:37
Alignment explanation
Indices: 64103860--64103938 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64103850 CCGAGCTCTA
* * *
64103860 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64103897 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64103934 AAGAC
1 AAGAC
64103939 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64105826 original size:40 final size:40
Alignment explanation
Indices: 64105685--64105869 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
64105675 TCGAATGATG
* * * * *
64105685 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
64105725 TCCGGACAAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
64105765 TTCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64105804 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
64105845 -CCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64105870 AACGAGTAGC
Statistics
Matches: 117, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 32 0.27
40 75 0.64
41 10 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64105891 original size:79 final size:79
Alignment explanation
Indices: 64105738--64105902 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
64105728 GGACAAAGAT
** * ***
64105738 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
64105803 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
64105817 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
64105880 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
64105896 CCGAAGG
1 CCGAAGG
64105903 TACGTGATTC
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.65
80 23 0.32
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:64123026 original size:21 final size:21
Alignment explanation
Indices: 64123000--64123040 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
64122990 GAAGCAGAAG
*
64123000 TTGTTGCAA-AAGAGGAAGTTC
1 TTGTTG-AATAAGAGAAAGTTC
64123021 TTGTTGAATAAGAGAAAGTT
1 TTGTTGAATAAGAGAAAGTT
64123041 GCTAAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.37, C:0.05, G:0.27, T:0.32
Consensus pattern (21 bp):
TTGTTGAATAAGAGAAAGTTC
Done.