Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 200 of 295
Found at i:64123517 original size:17 final size:17
Alignment explanation
Indices: 64123495--64123528 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64123485 GATAAGTATA
*
64123495 CATTGTCATTGCATTTT
1 CATTGTCATTACATTTT
64123512 CATTGTCATTACATTTT
1 CATTGTCATTACATTTT
64123529 TGTGTTAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.53
Consensus pattern (17 bp):
CATTGTCATTACATTTT
Found at i:64131150 original size:42 final size:41
Alignment explanation
Indices: 64130990--64131152 Score: 127
Period size: 42 Copynumber: 3.9 Consensus size: 41
64130980 ACCATACCAG
** *
64130990 TGCCATAT-CCTAGATATGGTCTTACATGAGATC-TCG-TACGA
1 TGCCATATACC-AGATATGGTCTTACACAAG-TCTTAGATA-GA
* * * * *
64131031 TGCCA-ATAGCCCAGCTATGGTTTTACACAAAGTCTCATATTGA
1 TGCCATATA--CCAGATATGGTCTTACAC-AAGTCTTAGATAGA
* *
64131074 TGCCATATCCCAAATATGGTCTTACACGAAGTCTTAGATAGA
1 TGCCATATACCAGATATGGTCTTACAC-AAGTCTTAGATAGA
*
64131116 TGTCATATACCAGATATGGTCTTACACATAGTCTTAG
1 TGCCATATACCAGATATGGTCTTACACA-AGTCTTAG
64131153 TAACCCTAAT
Statistics
Matches: 95, Mismatches: 19, Indels: 15
0.74 0.15 0.12
Matches are distributed among these distances:
40 2 0.02
41 6 0.06
42 73 0.77
43 11 0.12
44 3 0.03
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (41 bp):
TGCCATATACCAGATATGGTCTTACACAAGTCTTAGATAGA
Found at i:64137310 original size:27 final size:27
Alignment explanation
Indices: 64137276--64137483 Score: 224
Period size: 27 Copynumber: 7.7 Consensus size: 27
64137266 TGGATAAGTT
64137276 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
** *
64137303 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
** * *
64137330 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
** * *
64137357 GTAGAATTATTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
64137384 GTAGAATTACCGAAATACCCCTAT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
64137410 GATAGAATTACTGAAATACCCTTGTAAG
1 G-TAGAATTACCGAAATACCCCTGTAAG
*
64137438 GTCA-AAATACCGAAATACCCCTGT-AG
1 GT-AGAATTACCGAAATACCCCTGTAAG
*
64137464 GATAGAATTACCGAGATACC
1 G-TAGAATTACCGAAATACC
64137484 TTTGTGGGGT
Statistics
Matches: 157, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.04
27 147 0.94
28 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:64137360 original size:54 final size:54
Alignment explanation
Indices: 64137276--64137502 Score: 287
Period size: 54 Copynumber: 4.2 Consensus size: 54
64137266 TGGATAAGTT
* *
64137276 GTAGAATTACCGAAATACCCCTGTAAGG-TAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTAT-AGGATAGAATTATTGAAATACCCTTGTAGG
** *
64137330 GTAGAATTATTGAAATACCCCTATAGGGTAGAATTATTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTATAGGATAGAATTATTGAAATACCCTTGTAGG
* *
64137384 GTAGAATTACCGAAATACCCCTATAGGATAGAATTACTGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTATAGGATAGAATTATTGAAATACCCTTGTAGG
* * ** * * *
64137438 GTCA-AAATACCGAAATACCCCTGTAGGATAGAATTACCGAGATACCTTTGTGGG
1 GT-AGAATTACCGAAATACCCCTATAGGATAGAATTATTGAAATACCCTTGTAGG
*
64137492 GTAAAATTACC
1 GTAGAATTACC
64137503 ATTTTGCCCC
Statistics
Matches: 153, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
53 4 0.03
54 148 0.97
55 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCCTATAGGATAGAATTATTGAAATACCCTTGTAGG
Found at i:64137416 original size:81 final size:81
Alignment explanation
Indices: 64137276--64137483 Score: 265
Period size: 81 Copynumber: 2.6 Consensus size: 81
64137266 TGGATAAGTT
* ** * * *
64137276 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTATT
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGATAGAATTACT
*
64137341 GAAATACCCCTATAGG
66 GAAATACCCCTATAAG
** *
64137357 GTAGAATTATTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGATAGAATTACT
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGATAGAATTACT
* *
64137422 GAAATACCCTTGTAAG
66 GAAATACCCCTATAAG
* * *
64137438 GTCA-AAATACCGAAATACCCCTGTAGGATAGAATTACCGAGATACC
1 GT-AGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
64137484 TTTGTGGGGT
Statistics
Matches: 108, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 107 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGATAGAATTACT
GAAATACCCCTATAAG
Found at i:64142200 original size:41 final size:41
Alignment explanation
Indices: 64142155--64142236 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
64142145 GACTCGATTT
64142155 GGGTAATTGTGAATAGGTTGACCAAATCTGATCATTTCATA
1 GGGTAATTGTGAATAGGTTGACCAAATCTGATCATTTCATA
* *
64142196 GGGTAATTGTGGATAGGTTGACCAAATCTGCTCATTTCATA
1 GGGTAATTGTGAATAGGTTGACCAAATCTGATCATTTCATA
64142237 CCTGTCCGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (41 bp):
GGGTAATTGTGAATAGGTTGACCAAATCTGATCATTTCATA
Found at i:64146981 original size:27 final size:27
Alignment explanation
Indices: 64146940--64147083 Score: 171
Period size: 27 Copynumber: 5.3 Consensus size: 27
64146930 TAGATAAGTT
* *
64146940 GTAGAATTACCGAAATACCCATGTGGG
1 GTAGAATTATCGAAATACCCATGTAGG
* * *
64146967 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTATCGAAATACCCATGTAGG
*
64146994 GTAGAATTATTGAAATACCCATGTAGG
1 GTAGAATTATCGAAATACCCATGTAGG
* *
64147021 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTATCGAAATACCCATGTAGG
* * * *
64147048 TTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTATCGAAATACCCATGTAGG
*
64147075 GTAAAATTA
1 GTAGAATTA
64147084 CTATTTTGCC
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCATGTAGG
Found at i:64147023 original size:54 final size:54
Alignment explanation
Indices: 64146940--64147084 Score: 191
Period size: 54 Copynumber: 2.7 Consensus size: 54
64146930 TAGATAAGTT
* **
64146940 GTAGAATTACCGAAATACCCATGTGGGGTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTATCGAAATACCCATGTGGGGTAGAATTACCGAAATACCCCTATAGG
* * * *
64146994 GTAGAATTATTGAAATACCCATGTAGGGTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTATCGAAATACCCATGTGGGGTAGAATTACCGAAATACCCCTATAGG
* * * *
64147048 TTAGAATTATCGAGATACCCTTGTGGGGTAAAATTAC
1 GTAGAATTATCGAAATACCCATGTGGGGTAGAATTAC
64147085 TATTTTGCCC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAGAATTATCGAAATACCCATGTGGGGTAGAATTACCGAAATACCCCTATAGG
Found at i:64147871 original size:27 final size:26
Alignment explanation
Indices: 64147819--64147877 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
64147809 CCACATATAT
*
64147819 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
64147845 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
64147872 ATATCT
1 ATATCT
64147878 AATAGCTTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:64149266 original size:35 final size:36
Alignment explanation
Indices: 64149206--64149293 Score: 115
Period size: 35 Copynumber: 2.5 Consensus size: 36
64149196 CTTGGCCCAT
* *
64149206 TGCAGTAACAGTAAACAATAAAGTAACAGT-AATAG
1 TGCAGTAATAGTAAACAATAAAGTAACAATAAATAG
* *
64149241 TGCATTAATAGTAAACAATACAGTAACAATAAATAG
1 TGCAGTAATAGTAAACAATAAAGTAACAATAAATAG
* *
64149277 TGTAGTAATAATAAACA
1 TGCAGTAATAGTAAACA
64149294 GTATGCAAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
35 26 0.58
36 19 0.42
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24
Consensus pattern (36 bp):
TGCAGTAATAGTAAACAATAAAGTAACAATAAATAG
Found at i:64149647 original size:27 final size:27
Alignment explanation
Indices: 64149616--64149790 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64149606 ACAAAGGAGT
* *
64149616 AAAACAGTCATCTTACCAT-AAAAGGGC
1 AAAACAGTCATTTTACC-TCATAAGGGC
*
64149643 AAAACAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
* * * *
64149670 AAAACAATGATTTTACCTCATAAAGGA
1 AAAACAGTCATTTTACCTCATAAGGGC
* *
64149697 AAAACAGTGATTTTACCTCATAAGGGA
1 AAAACAGTCATTTTACCTCATAAGGGC
*
64149724 AAAATAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
64149751 AAAACAGTCA-TTTATCC-CATAAGGG-
1 AAAACAGTCATTTTA-CCTCATAAGGGC
*
64149776 AAAAAAGTCATTTTA
1 AAAACAGTCATTTTA
64149791 TCGATTAAGG
Statistics
Matches: 130, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
25 9 0.07
26 16 0.12
27 105 0.81
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (27 bp):
AAAACAGTCATTTTACCTCATAAGGGC
Found at i:64159354 original size:18 final size:18
Alignment explanation
Indices: 64159297--64159383 Score: 79
Period size: 18 Copynumber: 4.9 Consensus size: 18
64159287 CTTGGCCCAT
* *
64159297 TGCAGTAACAGT-AACAA
1 TGCAGTAATAGTAAACAG
* *
64159314 TGCAGTAACAGT-AACAA
1 TGCAGTAATAGTAAACAG
** *
64159331 CACAGTAATAGCAAACAG
1 TGCAGTAATAGTAAACAG
*
64159349 TGCAGTAACAGTAAACAG
1 TGCAGTAATAGTAAACAG
*
64159367 TGCAATAATAGTAAACA
1 TGCAGTAATAGTAAACA
64159384 ATATGCAAGT
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
17 25 0.43
18 33 0.57
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (18 bp):
TGCAGTAATAGTAAACAG
Found at i:64159804 original size:27 final size:27
Alignment explanation
Indices: 64159697--64159907 Score: 216
Period size: 27 Copynumber: 7.9 Consensus size: 27
64159687 AACATACATA
* * *
64159697 CATAGGGGTAAAACAATCATCTTACCAT
1 CATAAGGGCAAAACAATCATTTTACC-T
* * * * *
64159725 -AAAAGCGCAAAACAGTCATCTTACCA
1 CATAAGGGCAAAACAATCATTTTACCT
* * *
64159751 CATAAGAGCAAAAAAATGATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCT
*
64159778 CATAAGGGCAAAACAATGATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCT
* *
64159805 CATAACGG-AAAAAAAGTCATTTTACCT
1 CATAAGGGCAAAACAA-TCATTTTACCT
*
64159832 CATAAAGGCAAAA-AAGTCATTTTACCT
1 CATAAGGGCAAAACAA-TCATTTTACCT
*
64159859 CATAAGGG-AAAA-AGTCATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCT
64159884 CATAAGGGCAAAACAATCATTTTA
1 CATAAGGGCAAAACAATCATTTTA
64159908 TGCCATAAGT
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
25 19 0.12
26 15 0.10
27 118 0.76
28 4 0.03
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.25
Consensus pattern (27 bp):
CATAAGGGCAAAACAATCATTTTACCT
Found at i:64163773 original size:735 final size:735
Alignment explanation
Indices: 64162348--64163818 Score: 2559
Period size: 735 Copynumber: 2.0 Consensus size: 735
64162338 GGGTTCGACC
*
64162348 ATAAGCCAAGGATTCGATAGCCCAAAAGGAAAACCATAATAATAAGGGAGAAGTTTCTCAAAAGC
1 ATAAGCCAAGGATTCGATAGCCCAAAAGGAAAACCATAATAACAAGGGAGAAGTTTCTCAAAAGC
*
64162413 AGAAAGAGTAGAGGAAAAGAGGAGAAGAACTATTCGGCAACAATACCAATGTGGAAGGAGAGGGA
66 AGAAAGAGTAGAGGAAAAGAGAAGAAGAACTATTCGGCAACAATACCAATGTGGAAGGAGAGGGA
* *
64162478 AACATTGAAACTTAAAAGAATTGAGAAGGAGGAAGGAAAAAGGGTATTCGGCCAAAGAGGGAATC
131 AACATTAAAACTTAAAAGAATTGAGAAGGAGGAAGGAAAAAGGGTATTCGGCCAAAGAAGGAATC
* *
64162543 AATTGAGGAAGAGGGAGAAAAGAAAGAATTGGTTTAGACCCAGGAGCTAAAAGCTGAACAACTTT
196 AATTGAGGAAGAGGGAGAAAAGAAAGAATCGATTTAGACCCAGGAGCTAAAAGCTGAACAACTTT
* *
64162608 GAGATAGGAGAAAGGAGTATTCGACCAAGGAGAGAAGGGAAAATGATCCAAAACATAAATCCAAA
261 AAGAGAGGAGAAAGGAGTATTCGACCAAGGAGAGAAGGGAAAATGATCCAAAACATAAATCCAAA
*
64162673 AAGCACAAATGAGAGAAACAGTGAAGCCTCTTAGCACCAATCGGTTTCCAAAGAAATGAAGCAAC
326 AAGCACAAATGAGAGAAACAGTGAAGCCTCTTAGCACCAATCAGTTTCCAAAGAAATGAAGCAAC
64162738 CAAAACAAAGTGCTAAAACTCACCGAAATCAAATTCTTCCCCAAAGTCGATTCCTTTGAGTGCCT
391 CAAAACAAAGTGCTAAAACTCACCGAAATCAAATTCTTCCCCAAAGTCGATTCCTTTGAGTGCCT
*
64162803 AAAGTTCAAATCCGTCACACCACTTCCTCTCACCTCAACCCCCCATGATTTTCTCTTAAAATTTG
456 AAAGTTCAAATCCGTCACACCACTTCCTCTCACCTCAACCCCCCATGATTTTCTCCTAAAATTTG
*
64162868 GCTACACAATCCTCACACCCTCAAACACTCCCCCTAGCATCAGAATCCTACTGACACACAAACAC
521 GCTACACAATCCCCACACCCTCAAACACTCCCCCTAGCATCAGAATCCTACTGACACACAAACAC
* *
64162933 TCACACGACATTCAACAAAATAAAATGCACCCTGTGCATAGCAGGACTCGAACTCAAGACCTTTA
586 TCACACGACATTCAACAAAATAAAATGCACCCTGCGCATAGCAGGACTCGAACTCAAGACCTTCA
*
64162998 GTTACAGTAACAAGCCACCATTCCTTAGACTAACAGGCCCATTCTGTCATGAAATACTCACATTT
651 GTTACAGTAACAAGCCACCATTCCTTAGACCAACAGGCCCATTCTGTCATGAAATACTCACATTT
64163063 ATTTAAAAGGCCTACTGACT
716 ATTTAAAAGGCCTACTGACT
* * *
64163083 ATAAGCTAAGGATTCGATAGCCTAAAAGGAAAACCATAATAACAAGGGAGAAGTTTCTCAAAAGT
1 ATAAGCCAAGGATTCGATAGCCCAAAAGGAAAACCATAATAACAAGGGAGAAGTTTCTCAAAAGC
*
64163148 AGAAAGAGTAGAGGAAAAGAGAAGAAGAACTATTTGGCAACAATACCAATGTGGAAGGAGAGGGA
66 AGAAAGAGTAGAGGAAAAGAGAAGAAGAACTATTCGGCAACAATACCAATGTGGAAGGAGAGGGA
* *
64163213 AACATTAAAACTTGAAAGAATTGAGAAGGAGGAAGGAAAAAGGGTATTCGGCTAAAGAAGGAATC
131 AACATTAAAACTTAAAAGAATTGAGAAGGAGGAAGGAAAAAGGGTATTCGGCCAAAGAAGGAATC
64163278 AATTGAGGAAGAGGGAGAAAAGAAAGAATCGATTTAGACCCAGGAGCTAAAAGCTGAACAACTTT
196 AATTGAGGAAGAGGGAGAAAAGAAAGAATCGATTTAGACCCAGGAGCTAAAAGCTGAACAACTTT
* ** **
64163343 AAGAGAGGAGAAAGGAGTATTCGGCCAAGGAGAGAAGGGAAAATGATCCAAAATTTAAATCTGAA
261 AAGAGAGGAGAAAGGAGTATTCGACCAAGGAGAGAAGGGAAAATGATCCAAAACATAAATCCAAA
64163408 AAGCACAAATGAGAGAAACAGTGAAGCCTCTTAGCACCAATCAGTTTCCAAAGAAATGAAGCAAC
326 AAGCACAAATGAGAGAAACAGTGAAGCCTCTTAGCACCAATCAGTTTCCAAAGAAATGAAGCAAC
* *
64163473 CAAAACGAAGTGCTAAAACTCACCGAAATCAAATTCTTCCCTAAAGTCGATTCCTTTGAGTGCCT
391 CAAAACAAAGTGCTAAAACTCACCGAAATCAAATTCTTCCCCAAAGTCGATTCCTTTGAGTGCCT
* * *
64163538 AAAGTTCAAATCTGTCACACCACTTCCTTTCACCTCAACTCCCCATGATTTTCTCCTAAAATTTG
456 AAAGTTCAAATCCGTCACACCACTTCCTCTCACCTCAACCCCCCATGATTTTCTCCTAAAATTTG
* *
64163603 GCTACACAATCCCCACACCCTCAAACACTCCTCCTAGCATCAGAATCCTACTGGCACACAAACAC
521 GCTACACAATCCCCACACCCTCAAACACTCCCCCTAGCATCAGAATCCTACTGACACACAAACAC
**
64163668 TCACACGACATTCAGTAAAATAAAATGCACCCTGCGCATAGCAGGACTCGAACTCAAGACC-TCA
586 TCACACGACATTCAACAAAATAAAATGCACCCTGCGCATAGCAGGACTCGAACTCAAGACCTTCA
** *
64163732 GGTTACAGTAA-AATGCCACCATTCCTTAGACCAGTAGGCCCATTTTGTCATGAAATACTCACAT
651 -GTTACAGTAACAA-GCCACCATTCCTTAGACCAACAGGCCCATTCTGTCATGAAATACTCACAT
* *
64163796 TTATTTAAAAGGTCTATTGACT
714 TTATTTAAAAGGCCTACTGACT
64163818 A
1 A
64163819 GAGACAGGGT
Statistics
Matches: 695, Mismatches: 39, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
734 4 0.01
735 691 0.99
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (735 bp):
ATAAGCCAAGGATTCGATAGCCCAAAAGGAAAACCATAATAACAAGGGAGAAGTTTCTCAAAAGC
AGAAAGAGTAGAGGAAAAGAGAAGAAGAACTATTCGGCAACAATACCAATGTGGAAGGAGAGGGA
AACATTAAAACTTAAAAGAATTGAGAAGGAGGAAGGAAAAAGGGTATTCGGCCAAAGAAGGAATC
AATTGAGGAAGAGGGAGAAAAGAAAGAATCGATTTAGACCCAGGAGCTAAAAGCTGAACAACTTT
AAGAGAGGAGAAAGGAGTATTCGACCAAGGAGAGAAGGGAAAATGATCCAAAACATAAATCCAAA
AAGCACAAATGAGAGAAACAGTGAAGCCTCTTAGCACCAATCAGTTTCCAAAGAAATGAAGCAAC
CAAAACAAAGTGCTAAAACTCACCGAAATCAAATTCTTCCCCAAAGTCGATTCCTTTGAGTGCCT
AAAGTTCAAATCCGTCACACCACTTCCTCTCACCTCAACCCCCCATGATTTTCTCCTAAAATTTG
GCTACACAATCCCCACACCCTCAAACACTCCCCCTAGCATCAGAATCCTACTGACACACAAACAC
TCACACGACATTCAACAAAATAAAATGCACCCTGCGCATAGCAGGACTCGAACTCAAGACCTTCA
GTTACAGTAACAAGCCACCATTCCTTAGACCAACAGGCCCATTCTGTCATGAAATACTCACATTT
ATTTAAAAGGCCTACTGACT
Found at i:64178620 original size:30 final size:30
Alignment explanation
Indices: 64178584--64178645 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
64178574 TTCCCGAGCC
64178584 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * *
64178614 TAGGGGAAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
64178644 TA
1 TA
64178646 AGTTAAGGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.44, C:0.03, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:64185856 original size:16 final size:17
Alignment explanation
Indices: 64185825--64185857 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64185815 TTCATAAGTA
64185825 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
64185842 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
64185858 GCTCTATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:64186412 original size:46 final size:46
Alignment explanation
Indices: 64186143--64186416 Score: 352
Period size: 46 Copynumber: 6.0 Consensus size: 46
64186133 TTTGACATGA
* * * * *
64186143 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * * *
64186189 TGCCATGGTATCTTTTAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * * * *
64186235 TGCCAAGGTATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
64186281 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
64186327 TACCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
64186373 TGCCATGGTATCTTTCAACCATGGTGTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
64186417 AGAACACACT
Statistics
Matches: 206, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 202 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:64186834 original size:273 final size:273
Alignment explanation
Indices: 64186347--64186874 Score: 966
Period size: 273 Copynumber: 1.9 Consensus size: 273
64186337 TCTTTCAACC
** *
64186347 ATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTGTTACACATTTCAT
1 ATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGACTTACACATTTAAT
* *
64186412 ATCAGAGAACACACTCCCGCGAACCTCATCCTTATAGTGGGATTACCAGTCCAGGCTAAATCCCC
66 ATCAGAGAACACACTCCCGCGAACCTCATCCTTATACTGGGATTACCAGTCCAAGCTAAATCCCC
* *
64186477 TGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCCAGGCTAAATCCCTTGCAACGACAA
131 TGTAATATAAACTCATAGAGTATTGTCAGGATTACCAGTCCAGGCTAAATCCCCTGCAACGACAA
64186542 TTACTCTAATGAGCTTGGATCTGAATTACCAGTCCAGGCTAAATTTAGACCCTAATTCGGATTAC
196 TTACTCTAATGAGCTTGGATCTGAATTACCAGTCCAGGCTAAATTTAGACCCTAATTCGGATTAC
64186607 CCGTCCGGGCTAA
261 CCGTCCGGGCTAA
64186620 ATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGACTTACACATTTAAT
1 ATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGACTTACACATTTAAT
*
64186685 ATCAGAGAGCACACTCCCGCGAACCTCATCCTTATACTGGGATTACCAGTCCAAGCTAAATCCCC
66 ATCAGAGAACACACTCCCGCGAACCTCATCCTTATACTGGGATTACCAGTCCAAGCTAAATCCCC
*
64186750 TGTAATGTAAACTCATAGAGTATTGTCAGGATTACCAGTCCAGGCTAAATCCCCTGCAACGACAA
131 TGTAATATAAACTCATAGAGTATTGTCAGGATTACCAGTCCAGGCTAAATCCCCTGCAACGACAA
*
64186815 TTACTCTAATGAGCTTGGATCTGAATTACCAGTCCAGGCTAAATTTAGACCCTGATTCGG
196 TTACTCTAATGAGCTTGGATCTGAATTACCAGTCCAGGCTAAATTTAGACCCTAATTCGG
64186875 GAGGGCTATA
Statistics
Matches: 245, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
273 245 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (273 bp):
ATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGACTTACACATTTAAT
ATCAGAGAACACACTCCCGCGAACCTCATCCTTATACTGGGATTACCAGTCCAAGCTAAATCCCC
TGTAATATAAACTCATAGAGTATTGTCAGGATTACCAGTCCAGGCTAAATCCCCTGCAACGACAA
TTACTCTAATGAGCTTGGATCTGAATTACCAGTCCAGGCTAAATTTAGACCCTAATTCGGATTAC
CCGTCCGGGCTAA
Found at i:64188320 original size:47 final size:47
Alignment explanation
Indices: 64188266--64188356 Score: 155
Period size: 47 Copynumber: 1.9 Consensus size: 47
64188256 TTTCTATTTC
*
64188266 TTGAATCCAACTTGATATTCTTGCTCCCCATCATCTTCTTGCTATAT
1 TTGAATCCAACTTGATATTCTTGCTCCCCATCATCTCCTTGCTATAT
* *
64188313 TTGAATCCAACTTGATATTCTTGCTCTCGATCATCTCCTTGCTA
1 TTGAATCCAACTTGATATTCTTGCTCCCCATCATCTCCTTGCTA
64188357 CCTTTCTCTC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.21, C:0.27, G:0.10, T:0.42
Consensus pattern (47 bp):
TTGAATCCAACTTGATATTCTTGCTCCCCATCATCTCCTTGCTATAT
Found at i:64192238 original size:13 final size:13
Alignment explanation
Indices: 64192220--64192244 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64192210 AAATGAGCAC
64192220 GGGCTAGACACAT
1 GGGCTAGACACAT
64192233 GGGCTAGACACA
1 GGGCTAGACACA
64192245 CAGGCGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.32, T:0.12
Consensus pattern (13 bp):
GGGCTAGACACAT
Found at i:64197669 original size:27 final size:26
Alignment explanation
Indices: 64197590--64197877 Score: 213
Period size: 27 Copynumber: 10.7 Consensus size: 26
64197580 CTTGGTTTAC
* *
64197590 AAAATTACCAAAATACCCTCGATTAGC
1 AAAATTACCAAAATACCCT-GATTTGT
*
64197617 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTGATTTGT
* *
64197644 ATAATTACCAAAATGCCTCTGATTTGT
1 AAAATTACCAAAATACC-CTGATTTGT
* * * **
64197671 GAAATTATCGAAATACCCTCGACCTG-
1 AAAATTACCAAAATACCCT-GATTTGT
* * * ** *
64197697 AAAATTACCGAAATTCCTTTGACCTAT
1 AAAATTACCAAAATACC-CTGATTTGT
* *
64197724 AAAATTACCAAAATACCATCGACTTGT
1 AAAATTACCAAAATACCCT-GATTTGT
*
64197751 AAAATTACCGAAATACCCTCGATTTGT
1 AAAATTACCAAAATACCCT-GATTTGT
*
64197778 AAAATTTCCAAAATACGCCTGATTTGT
1 AAAATTACCAAAATAC-CCTGATTTGT
** *
64197805 AAAATTACTGAAATACCATTGATTTAG-
1 AAAATTACCAAAATACC-CTGATTT-GT
* *
64197832 AAAATTACAAAAATACCCCTGATTTAT
1 AAAATTACCAAAATA-CCCTGATTTGT
*
64197859 AGAATTA-CAGAAATACCCT
1 AAAATTACCA-AAATACCCT
64197878 TGACTTTCAA
Statistics
Matches: 211, Mismatches: 38, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
26 30 0.14
27 171 0.81
28 10 0.05
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGATTTGT
Found at i:64197819 original size:81 final size:80
Alignment explanation
Indices: 64197590--64197877 Score: 253
Period size: 81 Copynumber: 3.6 Consensus size: 80
64197580 CTTGGTTTAC
* * * *
64197590 AAAATTACCAAAATACCCTCGATTAGCAAAATTACCAAAATACCCCTGGTTTGTATAATTACCAA
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATA-CCCTGATTTGTAAAATTACCAA
*
64197655 AATGCC-TCTGATTTGT
65 AATACCATC-GATTTGT
* * * ** * * * ** *
64197671 GAAATTATCGAAATACCCTCGACCTG-AAAATTACCGAAATTCCTTTGACCTATAAAATTACCAA
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACC-CTGATTTGTAAAATTACCAA
*
64197735 AATACCATCGACTTGT
65 AATACCATCGATTTGT
* * **
64197751 AAAATTACCGAAATACCCTCGATTTGTAAAATTTCCAAAATACGCCTGATTTGTAAAATTACTGA
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATAC-CCTGATTTGTAAAATTACCAA
*
64197816 AATACCATTGATTTAG-
65 AATACCATCGATTT-GT
* * *
64197832 AAAATTACAAAAATACCC-CTGATTTATAGAATTA-CAGAAATACCCT
1 AAAATTACCAAAATACCCTC-GATTTGTAAAATTACCA-AAATACCCT
64197878 TGACTTTCAA
Statistics
Matches: 164, Mismatches: 36, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
79 2 0.01
80 66 0.40
81 94 0.57
82 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTGATTTGTAAAATTACCAAA
ATACCATCGATTTGT
Found at i:64197938 original size:27 final size:27
Alignment explanation
Indices: 64197565--64197939 Score: 170
Period size: 27 Copynumber: 13.9 Consensus size: 27
64197555 TAGAGGGTAG
* *
64197565 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGATTTGCAA
** * *
64197592 AATTACCAAAATACCCTCGATTAGCAA
1 AATTACTGAAATACCCTTGATTTGCAA
** * * * *
64197619 AATTACCAAAATACCCCTGGTTTGTAT
1 AATTACTGAAATACCCTTGATTTGCAA
** * **
64197646 AATTACCAAAAT-GCCTCTGATTTGTGA
1 AATTACTGAAATACCCT-TGATTTGCAA
* **
64197673 AATTA-TCGAAATACCCTCGACCTG-AA
1 AATTACT-GAAATACCCTTGATTTGCAA
* * * ** **
64197699 AATTACCGAAATTCCTTTGACCTATAA
1 AATTACTGAAATACCCTTGATTTGCAA
** * * * *
64197726 AATTACCAAAATACCATCGACTTGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
* * *
64197753 AATTACCGAAATACCCTCGATTTGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
* ** *
64197780 AATTTCCAAAATACGCC-TGATTTGTAA
1 AATTACTGAAATAC-CCTTGATTTGCAA
*
64197807 AATTACTGAAATACCATTGATTTAG-AA
1 AATTACTGAAATACCCTTGATTT-GCAA
** * ** *
64197834 AATTACAAAAATACCCCTGATTTATAG
1 AATTACTGAAATACCCTTGATTTGCAA
*
64197861 AATTACAGAAATACCCTTGACTTT-CAAA
1 AATTACTGAAATACCCTTGA-TTTGC-AA
**
64197889 AATTACTGAAATATCATTTG-TTTGCAA
1 AATTACTGAAATA-CCCTTGATTTGCAA
* *
64197916 AATTACTGAAATACCTTTGGTTTG
1 AATTACTGAAATACCCTTGATTTG
64197940 TAGATTTACC
Statistics
Matches: 275, Mismatches: 59, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
26 27 0.10
27 221 0.80
28 23 0.08
29 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGATTTGCAA
Found at i:64199444 original size:83 final size:83
Alignment explanation
Indices: 64199300--64199459 Score: 257
Period size: 83 Copynumber: 1.9 Consensus size: 83
64199290 TGGCTAAAGG
* *
64199300 TTTTAAATAGTAAGAAGGGTTTTAAATGAGAACACGGTTTTCGAAAAACACTTCAATGTGACACG
1 TTTTAAATAGTAAGAAGGATTTTAAATGAGAACACGGTTTTCGAAAAACACTTCAAAGTGACACG
64199365 CAAGATTTCGGCCATAAA
66 CAAGATTTCGGCCATAAA
* * *
64199383 TTTTAAATAGTAAGAAGGATTTTCAATGAGAACATGGTTTTCGAAAATCACTTCAAAGTGACACG
1 TTTTAAATAGTAAGAAGGATTTTAAATGAGAACACGGTTTTCGAAAAACACTTCAAAGTGACACG
* *
64199448 CCAGGTTTCGGC
66 CAAGATTTCGGC
64199460 TATAGTGTCT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 70 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (83 bp):
TTTTAAATAGTAAGAAGGATTTTAAATGAGAACACGGTTTTCGAAAAACACTTCAAAGTGACACG
CAAGATTTCGGCCATAAA
Found at i:64201697 original size:42 final size:41
Alignment explanation
Indices: 64201608--64201770 Score: 116
Period size: 42 Copynumber: 3.9 Consensus size: 41
64201598 CAACACCAAC
** *
64201608 GTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCA
1 GTCCCAGACAAGGTCTTACATGTAATCACATATCGATACCA
* * *
64201649 GTTCCCAGACAAGGTCTTATATGTACTCATATA-CGATACCGA
1 G-TCCCAGACAAGGTCTTACATGTAATCACATATCGATACC-A
** * * *
64201691 TGTCCCAGACATA-GTCTTACACATAAATTACAAATCGATGCCAA
1 -GTCCCAGACA-AGGTCTTACATGT-AATCACATATCGATACC-A
* *
64201735 CGTCCCAGACATGGTCTTACATGAAAT-AGCATATCG
1 -GTCCCAGACAAGGTCTTACATGTAATCA-CATATCG
64201771 GAATCCTATG
Statistics
Matches: 93, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
41 7 0.08
42 45 0.48
43 16 0.17
44 25 0.27
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (41 bp):
GTCCCAGACAAGGTCTTACATGTAATCACATATCGATACCA
Found at i:64213229 original size:5 final size:5
Alignment explanation
Indices: 64213219--64213243 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
64213209 AGTAATAATA
64213219 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
64213244 GCAAGGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:64215636 original size:41 final size:41
Alignment explanation
Indices: 64215577--64215699 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
64215567 AAAAGCCACC
*
64215577 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATT
* *
64215618 GTTGGATCCACGATCGTCAAGCAACCATGCGATTCTCAATT
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATT
* *
64215659 GGTGGATCTACGATCGTCAAGCAACTATGCGATCCTCAATT
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATT
64215700 TCTTCCTTCG
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATT
Found at i:64215989 original size:27 final size:27
Alignment explanation
Indices: 64215959--64216011 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
64215949 CCTAAATCTA
64215959 CAAACCAATAGTATTT-TGATAATTTTG
1 CAAACCAATAGTATTTCTG-TAATTTTG
*
64215986 CAAACCAATGGTATTTCTGTAATTTT
1 CAAACCAATAGTATTTCTGTAATTTT
64216012 TGAAAGTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (27 bp):
CAAACCAATAGTATTTCTGTAATTTTG
Found at i:64216026 original size:28 final size:27
Alignment explanation
Indices: 64215969--64216279 Score: 195
Period size: 27 Copynumber: 11.6 Consensus size: 27
64215959 CAAACCAATA
* *
64215969 GTATTT-TGATAATTTTGC-AAACCAATG
1 GTATTTCTG-TAATTTT-CTAAATCAAGG
*
64215996 GTATTTCTGTAATTTT-TGAAAGTTAAGG
1 GTATTTCTGTAATTTTCT-AAA-TCAAGG
* *
64216024 GTATTTTTGTAATTTTCTAAATCAGGG
1 GTATTTCTGTAATTTTCTAAATCAAGG
*
64216051 GTATTTCTGTAATTTTCCAAATCAAAGG
1 GTATTTCTGTAATTTTCTAAATC-AAGG
** ** *
64216079 G-ATTTCAATAATTTTAC-AGGTCGAGG
1 GTATTTCTGTAATTTT-CTAAATCAAGG
64216105 GTATTT-TGGTAA-TTTCATAAATCAAGG
1 GTATTTCT-GTAATTTTC-TAAATCAAGG
*
64216132 GTATTT-TGGTAATTTTAC-AAATCAGGG
1 GTATTTCT-GTAATTTT-CTAAATCAAGG
*
64216159 GTATTT-TGGTAATTTTAC-AAAGT-AGGG
1 GTATTTCT-GTAATTTT-CTAAA-TCAAGG
64216186 GTATTT-TGGTAATTTTGCT-AATCAAGG
1 GTATTTCT-GTAATTTT-CTAAATCAAGG
* * *
64216213 GTA-TTCAGTAATTTTGTAAACCAAGG
1 GTATTTCTGTAATTTTCTAAATCAAGG
* * *
64216239 GTA-TTCAGTAATTTTGTAAACCAAGG
1 GTATTTCTGTAATTTTCTAAATCAAGG
*
64216265 GTATTTCAGTAATTT
1 GTATTTCTGTAATTT
64216280 ACCCTACAGG
Statistics
Matches: 240, Mismatches: 25, Indels: 38
0.79 0.08 0.13
Matches are distributed among these distances:
25 2 0.01
26 54 0.22
27 150 0.62
28 32 0.13
29 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTCTGTAATTTTCTAAATCAAGG
Found at i:64216134 original size:81 final size:82
Alignment explanation
Indices: 64215969--64216253 Score: 257
Period size: 81 Copynumber: 3.5 Consensus size: 82
64215959 CAAACCAATA
* * * ** ** *
64215969 GTATTT-TGATAATTTTGCAAACCAATGGTATTTCTGTAATTTTTGAAAGTTA-AGGGTATTTTT
1 GTATTTCTG-TAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAAG-TAGAGGGTATTTTG
*
64216032 GTAATTTTCTAAATCAGGG
64 GTAATTTTCTAAATCAAGG
* * *
64216051 GTATTTCTGTAATTTTCCAAATCAAAGGG-ATTTCAATAATTTTAC-AGGTCGAGGGTATTTTGG
1 GTATTTCTGTAATTTTACAAATC-AAGGGTATTTCAATAATTTTACAAAGTAGAGGGTATTTTGG
64216114 TAA-TTTCATAAATCAAGG
65 TAATTTTC-TAAATCAAGG
* ***
64216132 GTATTT-TGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAGTAG-GGGTATTTTGG
1 GTATTTCT-GTAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAAGTAGAGGGTATTTTGG
64216195 TAATTTTGCT-AATCAAGG
65 TAATTTT-CTAAATCAAGG
* ** * *
64216213 GTA-TTCAGTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTT
1 GTATTTCTGTAATTTTACAAATCAAGGGTATTTCAATAATTTT
64216254 GTAAACCAAG
Statistics
Matches: 168, Mismatches: 25, Indels: 23
0.78 0.12 0.11
Matches are distributed among these distances:
79 10 0.06
80 30 0.18
81 83 0.49
82 38 0.23
83 7 0.04
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (82 bp):
GTATTTCTGTAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAAGTAGAGGGTATTTTGGT
AATTTTCTAAATCAAGG
Found at i:64216228 original size:26 final size:26
Alignment explanation
Indices: 64216194--64216279 Score: 138
Period size: 26 Copynumber: 3.3 Consensus size: 26
64216184 GGGTATTTTG
*
64216194 GTAATTTTGCT-AATCAAGGGTATTCA
1 GTAATTTTG-TAAACCAAGGGTATTCA
64216220 GTAATTTTGTAAACCAAGGGTATTCA
1 GTAATTTTGTAAACCAAGGGTATTCA
64216246 GTAATTTTGTAAACCAAGGGTATTTCA
1 GTAATTTTGTAAACCAAGGGTA-TTCA
64216273 GTAATTT
1 GTAATTT
64216280 ACCCTACAGG
Statistics
Matches: 57, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
25 1 0.02
26 45 0.79
27 11 0.19
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (26 bp):
GTAATTTTGTAAACCAAGGGTATTCA
Found at i:64216323 original size:27 final size:26
Alignment explanation
Indices: 64216260--64216323 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 26
64216250 TTTTGTAAAC
64216260 CAAGGGTATTTCAGTAATTTACCCTA
1 CAAGGGTATTTCAGTAATTTACCCTA
* *
64216286 C-AGGGAAATTTCAGTAATTGTACCTTA
1 CAAGGG-TATTTCAGTAATT-TACCCTA
64216313 CAAGGGTATTT
1 CAAGGGTATTT
64216324 TAGAAATCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
25 4 0.12
26 13 0.41
27 11 0.34
28 4 0.12
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (26 bp):
CAAGGGTATTTCAGTAATTTACCCTA
Found at i:64218637 original size:24 final size:24
Alignment explanation
Indices: 64218610--64218672 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
64218600 ATTAAAATCA
* * *
64218610 GCACACATAGTGCTATTCAACTCC
1 GCACACATAGTGCCATACAACACC
*
64218634 GCACACATAGTGCCATACTACACC
1 GCACACATAGTGCCATACAACACC
64218658 GCACACATAGTGCCA
1 GCACACATAGTGCCA
64218673 ATGTGCACTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.32, C:0.35, G:0.14, T:0.19
Consensus pattern (24 bp):
GCACACATAGTGCCATACAACACC
Found at i:64230981 original size:29 final size:29
Alignment explanation
Indices: 64230914--64231038 Score: 198
Period size: 29 Copynumber: 4.3 Consensus size: 29
64230904 AAGTCTATAT
* *
64230914 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
64230942 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
64230971 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
64231000 ACATTCATATGGACCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
64231029 ACATTCATAT
1 ACATTCATAT
64231039 TCATACTTTC
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 21 0.24
29 68 0.76
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:64231290 original size:16 final size:16
Alignment explanation
Indices: 64231248--64231282 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
64231238 GTAGCCAAAC
* *
64231248 TTTCAAATTTTTGGCA
1 TTTCAACTTTTCGGCA
64231264 TTTCAACTTTTCGGCA
1 TTTCAACTTTTCGGCA
64231280 TTT
1 TTT
64231283 TGACTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.51
Consensus pattern (16 bp):
TTTCAACTTTTCGGCA
Found at i:64237715 original size:27 final size:27
Alignment explanation
Indices: 64237683--64237745 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
64237673 ACCCCCTATA
*
64237683 TATATGATAAAATGACTATTTTGCCCT
1 TATATGATAAAATGACTATTTTGCCCC
* * *
64237710 TATATGTTAAGATGACTGTTTTGCCCC
1 TATATGATAAAATGACTATTTTGCCCC
*
64237737 TATGTGATA
1 TATATGATA
64237746 TATATATGTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (27 bp):
TATATGATAAAATGACTATTTTGCCCC
Found at i:64239608 original size:93 final size:93
Alignment explanation
Indices: 64239496--64239667 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
64239486 GCCCATAAGT
* *
64239496 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTTAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TCAGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
64239560 ACGAGCTCGAATGCCTAGTTACATCTCTC
65 ACGAGCTCGAATGCCTAGTTACATCTCTC
** *
64239589 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
64239654 CGAGTTCGGATGCC
66 CGAGCTCGAATGCC
64239668 CAAATATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 3 0.04
93 68 0.96
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGAATGCCTAGTTACATCTCTC
Found at i:64239659 original size:46 final size:46
Alignment explanation
Indices: 64239488--64239658 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
64239478 TGTAACCCGC
* *
64239488 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TCTGGACATTCGCAT
** * *
64239534 CCATAAGTGAACTTAGACTCAACTCAACGAG-CTCGA-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTCTGGACATTCGC-A--T
* *** *
64239580 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTCTGGACATTCGCAT
64239627 CCATAAGTGAACTCGGACTCAACTCAACGAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGT
64239659 TCGGATGCCC
Statistics
Matches: 98, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
46 58 0.59
47 26 0.27
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTCTGGACATTCGCAT
Found at i:64242630 original size:566 final size:566
Alignment explanation
Indices: 64241558--64242689 Score: 1991
Period size: 566 Copynumber: 2.0 Consensus size: 566
64241548 AGGAAGTCTT
* *
64241558 TGTAATATCCTGAATTAGGGCTTAATCAGAATAGTGGTTTCATGACCACAAATCTGAGATAGAAA
1 TGTAATATCCTGAATTAGGGCTTAATCAGAATAGTGGTTTCATGACCACAAATCCGAGATAAAAA
* *
64241623 TAATTATTTTATAATTATTTTGATGATTATGATATGATTGCATGATTGTGTGAAAATTTCGTGAT
66 TAATTATTTTATAATGATTTTGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGAT
64241688 AAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAACTTG
131 AAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAACTTG
** * *
64241753 CATTCTAGAAGTTTTTAGTATGAAATTATTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATT
196 CATTCTAGAAGTTTTTAGTATGAAATTACATTGAAATATTAATGAGGAGGTCTTAAATAACAATT
* *
64241818 TGACCAATTTTAAGTTCATGGACAAAATTAGGACATGGAAGGAATTTTTGGAAAGTTTAGTAGTA
261 TGACCAATTCTAAGTTCATGGACAAAATTAGGACATGGAAGAAATTTTTGGAAAGTTTAGTAGTA
* *
64241883 AGGGTATTTTTGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTGTCC
326 AGGGCATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTGTCC
*
64241948 ATCTTCTTCATTAGGCCGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGCTTCAAGCTTCCAAG
391 ATCTTCTTCATTAGGCCGAAATTTCAAGGGTCCTCCATAGCTAGGGTTTGCTTCAAGCTTCCAAG
*
64242013 CTCCATAGTAAGTGATTCCAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCCCGGTAGCT
456 CTCCATAGTAAGTGATTCCAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCCCGGAAGCT
*
64242078 CGATTAAGCTTATGTTAGCAATAATTCAACCTAGGGTTTATATTTG
521 CGATTAAGCTTATGCTAGCAATAATTCAACCTAGGGTTTATATTTG
*
64242124 TGTAATATCCTGAATTAGGGCTTAATC-GAAATAGTGGTTTCGTGACCACAAATCCGAGATAAAA
1 TGTAATATCCTGAATTAGGGCTTAATCAG-AATAGTGGTTTCATGACCACAAATCCGAGATAAAA
*
64242188 ATAATTATTTTATAATGATTTTGATGAATATGATATGATTGCATGATTGTGTGAAAATTTTGTGA
65 ATAATTATTTTATAATGATTTTGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGA
* *
64242253 TGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAATTT
130 TAAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAACTT
* *
64242318 GCATTCTAGAAGTTTTTAGTATGAAATTGCATTGAAATATTAATTAGGAGGTCTTAAATAACAAT
195 GCATTCTAGAAGTTTTTAGTATGAAATTACATTGAAATATTAATGAGGAGGTCTTAAATAACAAT
* *
64242383 TTTACCAATTCTAAG-TCTATGGACAAAAATT-GGACATGGATGAAATTTTTGGAAAGTTTAGTA
260 TTGACCAATTCTAAGTTC-ATGGAC-AAAATTAGGACATGGAAGAAATTTTTGGAAAGTTTAGTA
64242446 GTAAGGGCATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTG
323 GTAAGGGCATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTG
*
64242511 TCCATCTTCTTCATTAGGCCGAAATTTCAAGGGTCCTCCATAGCTAGGGTTTGTTTCAAGCTTCC
388 TCCATCTTCTTCATTAGGCCGAAATTTCAAGGGTCCTCCATAGCTAGGGTTTGCTTCAAGCTTCC
*
64242576 AAGCTCCATAGTAAGTGATTCCAAGCCTCGTTTTTAATGTTCTTTACGTTTTTGGAATCCCGGAA
453 AAGCTCCATAGTAAGTGATTCCAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCCCGGAA
64242641 GCTCGATTAAGCTTATGCTAGCAATAATTCAACCTAGGGTTTATATTTG
518 GCTCGATTAAGCTTATGCTAGCAATAATTCAACCTAGGGTTTATATTTG
64242690 GAAAAATACC
Statistics
Matches: 538, Mismatches: 25, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
565 3 0.01
566 529 0.98
567 6 0.01
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (566 bp):
TGTAATATCCTGAATTAGGGCTTAATCAGAATAGTGGTTTCATGACCACAAATCCGAGATAAAAA
TAATTATTTTATAATGATTTTGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGAT
AAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAACTTG
CATTCTAGAAGTTTTTAGTATGAAATTACATTGAAATATTAATGAGGAGGTCTTAAATAACAATT
TGACCAATTCTAAGTTCATGGACAAAATTAGGACATGGAAGAAATTTTTGGAAAGTTTAGTAGTA
AGGGCATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTGTCC
ATCTTCTTCATTAGGCCGAAATTTCAAGGGTCCTCCATAGCTAGGGTTTGCTTCAAGCTTCCAAG
CTCCATAGTAAGTGATTCCAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCCCGGAAGCT
CGATTAAGCTTATGCTAGCAATAATTCAACCTAGGGTTTATATTTG
Found at i:64243577 original size:93 final size:93
Alignment explanation
Indices: 64243418--64243588 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
64243408 GGATGGTTGA
* *
64243418 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
64243483 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
64243511 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
64243576 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
64243589 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64243591 original size:46 final size:46
Alignment explanation
Indices: 64243422--64243593 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
64243412 GGTTGAGCAT
* * *
64243422 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
64243468 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
64243513 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
64243561 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64243594 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 60 0.56
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:64245766 original size:46 final size:46
Alignment explanation
Indices: 64245645--64245768 Score: 212
Period size: 46 Copynumber: 2.7 Consensus size: 46
64245635 GTTGAGCATT
* * *
64245645 CGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
64245691 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
*
64245737 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64245769 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
Found at i:64250604 original size:46 final size:46
Alignment explanation
Indices: 64250537--64250711 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
64250527 TGTAACCCGC
*
64250537 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
64250583 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * *
64250633 CTC-T---TGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
64250676 CCATAAGTGAACTCGAACTCAACTCAATGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
64250712 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 59 0.57
47 25 0.24
48 1 0.01
49 1 0.01
50 5 0.05
51 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:64250652 original size:93 final size:93
Alignment explanation
Indices: 64250544--64250716 Score: 258
Period size: 93 Copynumber: 1.9 Consensus size: 93
64250534 CGCCCATAAG
* * *
64250544 TGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-AGACTCAACTC
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGA-ACTCAACTC
64250608 AACAAGCTCGGATGCCTAGTTACATCTCT
65 AACAAGCTCGGATGCCTAGTTACATCTCT
* *
64250637 TGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
** *
64250702 ATGAGTTCGGATGCC
66 ACAAGCTCGGATGCC
64250717 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCT
Found at i:64255939 original size:47 final size:45
Alignment explanation
Indices: 64255838--64255999 Score: 165
Period size: 47 Copynumber: 3.5 Consensus size: 45
64255828 GTGCTGATAC
*
64255838 CATGTCCC-AACATGGTCTTACACTGACAC-CTCTC-ATAGCCGATG
1 CATGTCCCAAACAT-GTCTTACACTG-CACTCTCTCAATAGTCGATG
64255882 CATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAAT-GTCGATG
1 CATGTCCCAAACATGTCTTACACT-GCACTC-TCTCAATAGTCGATG
* * *
64255928 CCATGTCCCAAACATTGTCTTACACTG-GCTCTCAT-AATGTGGTTGATG
1 -CATGTCCCAAACA-TGTCTTACACTGCACTCTC-TCAA--TAGTCGATG
64255976 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAAACATGTCTTACACT
64256000 AGCTGACTCA
Statistics
Matches: 104, Mismatches: 3, Indels: 20
0.82 0.02 0.16
Matches are distributed among these distances:
44 21 0.20
45 11 0.11
46 25 0.24
47 30 0.29
48 17 0.16
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.29
Consensus pattern (45 bp):
CATGTCCCAAACATGTCTTACACTGCACTCTCTCAATAGTCGATG
Found at i:64263104 original size:13 final size:13
Alignment explanation
Indices: 64263086--64263116 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
64263076 CCCCGTACCC
64263086 GAGTCCGTCGCCG
1 GAGTCCGTCGCCG
64263099 GAGTCCGTCGCCG
1 GAGTCCGTCGCCG
64263112 GAGTC
1 GAGTC
64263117 GGACACGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.10, C:0.35, G:0.39, T:0.16
Consensus pattern (13 bp):
GAGTCCGTCGCCG
Found at i:64264591 original size:119 final size:119
Alignment explanation
Indices: 64264431--64264687 Score: 308
Period size: 119 Copynumber: 2.2 Consensus size: 119
64264421 AAATCACGTA
* * * *
64264431 CCTTCGGAATTTAA-CCGGATATAGCTACTCGTTCAAATGCCTTCGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCCGGATATAGCTACTCGTACAAATGCCTTCGGACATAGCCCGGAAT-TAG
* * *
64264494 TAACTCGCACGAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATG
65 TAACTCGCACAAATGCCTTC-GGATCTTAGCCCGGATATAGTAACTTAGCACAAA-G
* * * *
64264549 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGTACCAATGCCTTCGGGCTTAGCCCGGAATTAG
1 CCTTCGGGACTTAACCCGGATATAGCT-ACTCGTACAAATGCCTTCGGACATAGCCCGGAATTAG
* * *
64264613 TAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAG
65 TAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTAACTTAGCACAAAG
*
64264668 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
64264688 CAACATTCGA
Statistics
Matches: 119, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
118 16 0.13
119 94 0.79
120 9 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
CCTTCGGGACTTAACCCGGATATAGCTACTCGTACAAATGCCTTCGGACATAGCCCGGAATTAGT
AACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTAACTTAGCACAAAG
Found at i:64264601 original size:79 final size:80
Alignment explanation
Indices: 64264464--64264687 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 80
64264454 GCTACTCGTT
* *
64264464 CAAATGCCTTC-GGACATAGCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGG
*
64264528 -TTATAGTAACTCGCA
66 AAT-TAGTAACTCGCA
* *
64264543 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGTACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCG
64264606 GAATTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* ** * * * * *
64264622 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAACCCGGTTATAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCCC
64264685 GGA
64 GGA
64264688 CAACATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
78 4 0.03
79 69 0.55
80 50 0.40
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:64264687 original size:40 final size:40
Alignment explanation
Indices: 64264445--64264687 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
64264435 CGGAATTTAA
** *
64264445 CCGGATATAGCT-ACTCGTTCAAATGCCTTC-GGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64264484 CCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64264524 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
64264564 CCGGATTTAGTAACTCGTACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
64264603 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
64264643 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
64264683 CCGGA
1 CCGGA
64264688 CAACATTCGA
Statistics
Matches: 176, Mismatches: 20, Indels: 15
0.83 0.09 0.07
Matches are distributed among these distances:
38 3 0.02
39 55 0.31
40 106 0.60
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:64280515 original size:46 final size:46
Alignment explanation
Indices: 64280458--64280658 Score: 253
Period size: 46 Copynumber: 4.4 Consensus size: 46
64280448 CACTGTAATA
* * * *
64280458 TAGCCGAAGCTATCACTGTAATGTAGCTAAAGCTACCACTGTA-TTG
1 TAGCCAAAGCTACCACTGTAATGTAGCTGAAGCTACCACTG-AGATG
*
64280504 TAGCCAAAGCTACCACTG-AGATGTAGCTGAAGCTACAACTGAGATG
1 TAGCCAAAGCTACCACTGTA-ATGTAGCTGAAGCTACCACTGAGATG
* * *
64280550 TAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCAATGAGATG
1 TAGCCAAAGCTACCACTGTAATGTAGCTGAAGCTACCACTGAGATG
* * * *
64280596 TAGTCGAAGCTACCACTGTATTGTAGCTGAAGCTAGCACTGAGATG
1 TAGCCAAAGCTACCACTGTAATGTAGCTGAAGCTACCACTGAGATG
*
64280642 CAGCCAAAGCTACCACT
1 TAGCCAAAGCTACCACT
64280659 AAGATGTAGC
Statistics
Matches: 135, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
45 2 0.01
46 132 0.98
47 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (46 bp):
TAGCCAAAGCTACCACTGTAATGTAGCTGAAGCTACCACTGAGATG
Found at i:64280551 original size:69 final size:70
Alignment explanation
Indices: 64280458--64280668 Score: 263
Period size: 69 Copynumber: 3.1 Consensus size: 70
64280448 CACTGTAATA
64280458 TAGC-CGAAGCTATC-ACTGTAATGTAGCTAAAGCTACCACTGTATTGTAGCCAAAGCTACCACT
1 TAGCTCGAAGCTA-CAACTGTAATGTAGCTAAAGCTACCACTGTATTGTAGCCAAAGCTACCACT
64280521 GAGATG
65 GAGATG
* * *
64280527 TAGCT-GAAGCTACAACTG-AGATGTAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCAAT
1 TAGCTCGAAGCTACAACTGTA-ATGTAGCTAAAGCTACCACTGTATTGTAGCCAAAGCTACCACT
64280590 GAGATG
65 GAGATG
* * * * * *
64280596 TAG-TCGAAGCTACCACTGTATTGTAGCTGAAGCTAGCACTG-AGATGCAGCCAAAGCTACCACT
1 TAGCTCGAAGCTACAACTGTAATGTAGCTAAAGCTACCACTGTA-TTGTAGCCAAAGCTACCACT
*
64280659 AAGATG
65 GAGATG
64280665 TAGC
1 TAGC
64280669 CTACAGATTC
Statistics
Matches: 122, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
68 4 0.03
69 117 0.96
70 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (70 bp):
TAGCTCGAAGCTACAACTGTAATGTAGCTAAAGCTACCACTGTATTGTAGCCAAAGCTACCACTG
AGATG
Found at i:64280663 original size:23 final size:23
Alignment explanation
Indices: 64280458--64280669 Score: 207
Period size: 23 Copynumber: 9.2 Consensus size: 23
64280448 CACTGTAATA
*
64280458 TAGCCGAAGCTATCACTGTA-ATG
1 TAGCCGAAGCTACCACTG-AGATG
** *
64280481 TAGCTAAAGCTACCACTGTA-TTG
1 TAGCCGAAGCTACCACTG-AGATG
*
64280504 TAGCCAAAGCTACCACTGAGATG
1 TAGCCGAAGCTACCACTGAGATG
* *
64280527 TAGCTGAAGCTACAACTGAGATG
1 TAGCCGAAGCTACCACTGAGATG
* *
64280550 TAGCCAAAGCTACCACTGTA-TTG
1 TAGCCGAAGCTACCACTG-AGATG
*
64280573 TAGCCGAAGCTACCAATGAGATG
1 TAGCCGAAGCTACCACTGAGATG
* *
64280596 TAGTCGAAGCTACCACTGTA-TTG
1 TAGCCGAAGCTACCACTG-AGATG
* *
64280619 TAGCTGAAGCTAGCACTGAGATG
1 TAGCCGAAGCTACCACTGAGATG
* * *
64280642 CAGCCAAAGCTACCACTAAGATG
1 TAGCCGAAGCTACCACTGAGATG
64280665 TAGCC
1 TAGCC
64280670 TACAGATTCT
Statistics
Matches: 155, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
22 3 0.02
23 150 0.97
24 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (23 bp):
TAGCCGAAGCTACCACTGAGATG
Found at i:64283632 original size:40 final size:40
Alignment explanation
Indices: 64283580--64283847 Score: 437
Period size: 40 Copynumber: 6.7 Consensus size: 40
64283570 ATAACCACAA
* * * *
64283580 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
64283620 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
64283660 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
64283700 ACACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
64283742 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
64283782 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
64283822 GCACAAATGCCTTCGGGTCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAGCCC
64283848 AGATGTATTC
Statistics
Matches: 213, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
40 174 0.82
42 39 0.18
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:64283770 original size:122 final size:120
Alignment explanation
Indices: 64283581--64283847 Score: 444
Period size: 122 Copynumber: 2.2 Consensus size: 120
64283571 TAACCACAAG
* * * *
64283581 CACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCC
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* *
64283646 GGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCA
66 GGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCA
64283701 CACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATA-G-CAACTCGCACAAATGCCTTCGGGTCTTAGC
**
64283766 CCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTG
64 CCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCA
64283823 CACAAATGCCTTCGGGTCTTAGCCC
1 CACAAATGCCTTCGGGTCTTAGCCC
64283848 AGATGTATTC
Statistics
Matches: 137, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
120 29 0.21
121 1 0.01
122 107 0.78
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.26
Consensus pattern (120 bp):
CACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
GGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCA
Found at i:64287268 original size:27 final size:27
Alignment explanation
Indices: 64287235--64287287 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
64287225 ATACCCGATT
*
64287235 TGTAAAATCACCAAAATACCCTTGTAG
1 TGTAAAATCACCAAAATACCCCTGTAG
* **
64287262 TGTAAAATTACCGTAATACCCCTGTA
1 TGTAAAATCACCAAAATACCCCTGTA
64287288 TGGTAGAATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (27 bp):
TGTAAAATCACCAAAATACCCCTGTAG
Found at i:64287577 original size:22 final size:22
Alignment explanation
Indices: 64287545--64287608 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
64287535 GCCTTTAGCC
*
64287545 GTCCTGCCTATGACGTTGAGTA
1 GTCCTGTCTATGACGTTGAGTA
*
64287567 GTCCTGTCTATGACGTTGAGTT
1 GTCCTGTCTATGACGTTGAGTA
* *
64287589 GTCCTGTCTACGGCGTTGAG
1 GTCCTGTCTATGACGTTGAG
64287609 CCATCCTGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.14, C:0.22, G:0.30, T:0.34
Consensus pattern (22 bp):
GTCCTGTCTATGACGTTGAGTA
Found at i:64294393 original size:40 final size:39
Alignment explanation
Indices: 64294311--64294493 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 39
64294301 GAATGATGTT
* * * * *
64294311 CGGGCTAAGTCATGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTC-CGAAGGCATTTGTGC-GAGTTACTAAATC
* * *
64294351 CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
64294391 CGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
*
64294430 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATC
*
64294470 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGT-CCGAAGGCATTTG
64294494 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:64294515 original size:79 final size:79
Alignment explanation
Indices: 64294362--64294526 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
64294352 GGACTAAGAT
* **
64294362 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
64294427 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
64294441 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
64294504 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
64294520 CCGAAGG
1 CCGAAGG
64294527 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:64302564 original size:40 final size:39
Alignment explanation
Indices: 64302482--64302664 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 39
64302472 GAATGATGTT
* * * *
64302482 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATC
* * *
64302522 CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
64302562 CGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
*
64302601 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATC
*
64302641 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGT-CCGAAGGCATTTG
64302665 AATGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:64302686 original size:79 final size:79
Alignment explanation
Indices: 64302533--64302697 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
64302523 GGACTAAGAT
* **
64302533 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
64302598 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
64302612 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
64302675 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
64302691 CCGAAGG
1 CCGAAGG
64302698 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:64309264 original size:29 final size:29
Alignment explanation
Indices: 64309213--64309310 Score: 101
Period size: 29 Copynumber: 3.4 Consensus size: 29
64309203 TGCCCCACTT
* * *
64309213 GGCCCAA-TCTCATTTATAAGGCCTATCA
1 GGCCCAATTCACATTCATATGGCCTATCA
*
64309241 GGCCCAATTCACATTCATATGGCCCATCA
1 GGCCCAATTCACATTCATATGGCCTATCA
* * *
64309270 AGCCCAATTCATATTCATATAGCCTAGT-A
1 GGCCCAATTCACATTCATATGGCCTA-TCA
*
64309299 GGCCCAAATCAC
1 GGCCCAATTCAC
64309311 CTTTATATTC
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
28 7 0.12
29 49 0.86
30 1 0.02
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.26
Consensus pattern (29 bp):
GGCCCAATTCACATTCATATGGCCTATCA
Found at i:64313874 original size:35 final size:29
Alignment explanation
Indices: 64313765--64313857 Score: 118
Period size: 29 Copynumber: 3.2 Consensus size: 29
64313755 TGCCCCACTT
*
64313765 GGCCCAATCTCAT-TT-ATATGGCCTATCA
1 GGCCCAATC-CATATTCATATGGCCCATCA
* * *
64313793 GGCCTAATTCACATTCATATGGCCCATCA
1 GGCCCAATCCATATTCATATGGCCCATCA
*
64313822 GGCCCAATCCATATTCATATGGCCCATTA
1 GGCCCAATCCATATTCATATGGCCCATCA
64313851 GGCCCAA
1 GGCCCAA
64313858 ATCACCTTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 2 0.04
28 9 0.16
29 44 0.80
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
GGCCCAATCCATATTCATATGGCCCATCA
Found at i:64316978 original size:40 final size:39
Alignment explanation
Indices: 64316934--64317038 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
64316924 AGTGACCATA
*
64316934 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
64316974 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
64317012 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
64317039 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:64316995 original size:39 final size:40
Alignment explanation
Indices: 64316897--64317038 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
64316887 AATGATGTCT
* * *
64316897 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACC
* *
64316937 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACC
*
64316977 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
*
64317016 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
64317039 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
39 34 0.39
40 43 0.49
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
Found at i:64317057 original size:79 final size:80
Alignment explanation
Indices: 64316897--64317044 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
64316887 AATGATGTCT
* **
64316897 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
64316962 CGAGATACTAATTCC
66 CGAGATACTAATTCC
* * * * *
64316977 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
64317039 AACGAG
64 AACGAG
64317045 TAGCTATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.72
80 15 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACTAATTCC
Found at i:64317332 original size:47 final size:47
Alignment explanation
Indices: 64317263--64317571 Score: 501
Period size: 47 Copynumber: 6.6 Consensus size: 47
64317253 AAGGGTTGGT
64317263 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
64317310 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
64317357 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGGTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64317404 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64317451 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
64317498 AATGTGAAAGGGTATATATGTGACAGGGTCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
64317545 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
64317572 TCCCGAAGGG
Statistics
Matches: 245, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 245 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:64319602 original size:40 final size:40
Alignment explanation
Indices: 64319547--64319725 Score: 304
Period size: 40 Copynumber: 4.5 Consensus size: 40
64319537 GAGAATTGAG
*
64319547 AGTGATATATCCGGGCTAAGCCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
64319587 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
64319627 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
64319667 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
64319707 AGTAATATATCCGTGCTAA
1 AGTGATATATCCGGGCTAA
64319726 ACCTCGAAGA
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:64323819 original size:39 final size:40
Alignment explanation
Indices: 64323722--64323863 Score: 132
Period size: 40 Copynumber: 3.6 Consensus size: 40
64323712 AATGATGTCT
* * *
64323722 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACC
* * *
64323762 AGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACC
* *
64323802 GGGCTAAG-CCCGAAGGCATTTCTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
*
64323841 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
64323864 AACGAGTAGC
Statistics
Matches: 84, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
39 33 0.39
40 40 0.48
41 10 0.12
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
Found at i:64323870 original size:40 final size:39
Alignment explanation
Indices: 64323772--64323863 Score: 123
Period size: 39 Copynumber: 2.3 Consensus size: 39
64323762 AGACTAAGAT
* *
64323772 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGC
* *
64323811 CCGAAGGCATTTCTGCGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-C
64323851 CCGAAGGCATTTG
1 CCGAAGGCATTTG
64323864 AACGAGTAGC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.04
39 31 0.67
40 13 0.28
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGC
Found at i:64324157 original size:47 final size:47
Alignment explanation
Indices: 64324088--64324396 Score: 519
Period size: 47 Copynumber: 6.6 Consensus size: 47
64324078 AAGGGTTGGT
64324088 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64324135 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
64324182 AATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64324229 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64324276 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
64324323 AATGTGAAAGGGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
64324370 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
64324397 TCCCGAAGGG
Statistics
Matches: 246, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 246 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:64328851 original size:17 final size:18
Alignment explanation
Indices: 64328831--64328865 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
64328821 TGAAAACCGT
64328831 TCTTAA-AATAAAAAAAA
1 TCTTAATAATAAAAAAAA
*
64328848 TCTTAATTATAAAAAAAA
1 TCTTAATAATAAAAAAAA
64328866 ACTCCTTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (18 bp):
TCTTAATAATAAAAAAAA
Found at i:64329915 original size:29 final size:29
Alignment explanation
Indices: 64329846--64329957 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
64329836 ACTCCTACAT
* *
64329846 ACATGCATATGGCCCA-CTTGGCCCAA-TC
1 ACATTCATATGGCCCATC-AGGCCCAATTC
* * * *
64329874 TCATTTACATGGCCAATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
64329903 ACATTCATATGGCCCATCATGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* *
64329932 ATATTCATATGGCCCATTAGGCCCAA
1 ACATTCATATGGCCCATCAGGCCCAA
64329958 ATTGCCTTTA
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
28 18 0.26
29 50 0.74
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAATTC
Found at i:64332800 original size:46 final size:46
Alignment explanation
Indices: 64332733--64332851 Score: 154
Period size: 46 Copynumber: 2.6 Consensus size: 46
64332723 TATGTGTGCT
* * *
64332733 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATA-AGAG-CC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACAC-TGAAACAGAGCCC
*
64332779 AGTGTAAGACATGTCTAGGACATGCATCGACACTGAAACGAGAGCCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACACTGAAAC-AGAGCCC
64332826 A-TGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
64332852 TGGCCTCGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
44 3 0.05
45 4 0.06
46 55 0.85
47 3 0.05
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACACTGAAACAGAGCCC
Found at i:64335483 original size:48 final size:48
Alignment explanation
Indices: 64335375--64335559 Score: 173
Period size: 49 Copynumber: 3.9 Consensus size: 48
64335365 TATGTGTGCT
* * * *
64335375 AGTGTAAGACATGTCTGGGACATGCAT-AGCCAC-ACTATA--AGAGCC
1 AGTGTAAGACCTGTCTAGGACATGCATCGGCCTCGA-TATATGAGAGCC
* * *
64335420 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATGCGAGCC
1 AGTGTAAGACCTGTCTAGGACATGCATCGGCCTCGATATATGAGAGCC
* * * *
64335468 AGAT-TAAGACCTGTCTAGGACATGGCATCGACATCGATAGATAAGAGCC
1 AG-TGTAAGACCTGTCTAGGACAT-GCATCGGCCTCGATATATGAGAGCC
* * *
64335517 AGTGTAAGACCTGTCTGGGACATGTCATTGGCCTTGATATATG
1 AGTGTAAGACCTGTCTAGGACATG-CATCGGCCTCGATATATG
64335560 GAAGTTAGTA
Statistics
Matches: 113, Mismatches: 19, Indels: 12
0.78 0.13 0.08
Matches are distributed among these distances:
45 26 0.23
46 7 0.06
47 1 0.01
48 27 0.24
49 52 0.46
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTAGGACATGCATCGGCCTCGATATATGAGAGCC
Found at i:64338847 original size:28 final size:27
Alignment explanation
Indices: 64338757--64338939 Score: 116
Period size: 27 Copynumber: 6.7 Consensus size: 27
64338747 TTTCACCTTA
* * * * * *
64338757 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTTGTAATTTTATAAAT
** *
64338784 CAAGGGTATTTCGGTAATTTTGA-AAAG
1 CAAGGGTATTTTTGTAATTTT-ATAAAT
** *
64338811 CAATAGTATTTTTGTAATTTTTTAAAGT
1 CAAGGGTATTTTTGTAATTTTATAAA-T
* * *
64338839 CAATGGTATTTCTATAATTTTATAAAT
1 CAAGGGTATTTTTGTAATTTTATAAAT
* * **
64338866 TAGGGGTATTTTTGTAATTTTCCAAAT
1 CAAGGGTATTTTTGTAATTTTATAAAT
* * *
64338893 TAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTTGTAATTTTATAAAT
** *
64338920 TGAGGGTATTTTAGTAATTT
1 CAAGGGTATTTTTGTAATTT
64338940 CTCTTTATTA
Statistics
Matches: 126, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.44
Consensus pattern (27 bp):
CAAGGGTATTTTTGTAATTTTATAAAT
Found at i:64338920 original size:54 final size:55
Alignment explanation
Indices: 64338816--64338939 Score: 146
Period size: 54 Copynumber: 2.3 Consensus size: 55
64338806 AAAAGCAATA
** * *
64338816 GTATTTTTGTAATTTTTTAAAGTCAATGGTATTTCTATAATTTTATAAATT-AGGG
1 GTATTTTTGTAATTTTCCAAAGTCAAGGGTATTTCTATAATTTTACAAATTGA-GG
* *
64338871 GTATTTTTGTAATTTTCCAAA-TTAAGGGTATTT-TGGTAATTTTACAAATTGAGG
1 GTATTTTTGTAATTTTCCAAAGTCAAGGGTATTTCT-ATAATTTTACAAATTGAGG
*
64338925 GTATTTTAGTAATTT
1 GTATTTTTGTAATTT
64338940 CTCTTTATTA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
53 1 0.02
54 39 0.65
55 20 0.33
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.50
Consensus pattern (55 bp):
GTATTTTTGTAATTTTCCAAAGTCAAGGGTATTTCTATAATTTTACAAATTGAGG
Found at i:64341346 original size:47 final size:47
Alignment explanation
Indices: 64341268--64341721 Score: 791
Period size: 47 Copynumber: 9.6 Consensus size: 47
64341258 CCCTTCGAGA
* * * * * *
64341268 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64341315 CCTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64341362 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64341409 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64341458 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64341505 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64341554 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64341601 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64341648 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64341695 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
64341722 ACCAACCCTT
Statistics
Matches: 391, Mismatches: 12, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 297 0.76
49 94 0.24
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64341465 original size:96 final size:94
Alignment explanation
Indices: 64341268--64341721 Score: 791
Period size: 96 Copynumber: 4.8 Consensus size: 94
64341258 CCCTTCGAGA
* * * * * * * *
64341268 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
64341333 TTTCACATTCATCACATCAGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
64341362 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
64341427 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
64341458 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
64341523 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
64341554 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
64341619 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
64341648 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
64341713 TTTCACATT
66 TTTCACATT
64341722 ACCAACCCTT
Statistics
Matches: 349, Mismatches: 9, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
94 160 0.46
96 189 0.54
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:64341566 original size:143 final size:141
Alignment explanation
Indices: 64341268--64341721 Score: 791
Period size: 143 Copynumber: 3.2 Consensus size: 141
64341258 CCCTTCGAGA
* * * * * * * *
64341268 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
64341333 TTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
64341398 GGCCATTAGGC
131 GGCCATTAGGC
64341409 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
64341474 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
64341539 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
64341554 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
64341619 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
64341684 GGCCATTAGGC
131 GGCCATTAGGC
64341695 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
64341722 ACCAACCCTT
Statistics
Matches: 300, Mismatches: 9, Indels: 8
0.95 0.03 0.03
Matches are distributed among these distances:
141 74 0.25
143 179 0.60
145 47 0.16
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:64342063 original size:39 final size:39
Alignment explanation
Indices: 64341946--64342127 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
64341936 GCTACTCGTT
* *
64341946 CAAATGCCTTCGGGACATAGCTC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCA
* * *
64341986 CAAATGCCTTTGGTACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAACTCGCA
* *
64342026 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTACCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* * * * * * *
64342065 CAAATGCCTTCGGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
64342106 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGG-CTTAGCCC
64342128 AGACATCATT
Statistics
Matches: 115, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 35 0.30
40 68 0.59
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:64346265 original size:40 final size:40
Alignment explanation
Indices: 64345978--64346243 Score: 388
Period size: 40 Copynumber: 6.7 Consensus size: 40
64345968 GCCCGAATAC
* * * * * *
64345978 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
* * * ** * *
64346018 ATAACACCAGCATAAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
*
64346058 ATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
64346098 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
* *
64346138 ACATCACTAGCACGAATGCTCTTTGGAACTTAGTCCGGAC
1 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
64346178 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
64346218 ACATCACTAGCACGAATGCTCTTCGG
1 ACATCACTAGCACGAATGCTCTTCGG
64346244 GATTTAGCCC
Statistics
Matches: 210, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 210 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
Found at i:64347757 original size:47 final size:47
Alignment explanation
Indices: 64347631--64347800 Score: 304
Period size: 47 Copynumber: 3.6 Consensus size: 47
64347621 CCCTTCGGGA
*
64347631 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64347678 CTTATCACATATATATACACTTTCACATTCATCACATCCGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64347727 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64347774 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
64347801 ACCAACCCTT
Statistics
Matches: 118, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
47 73 0.62
49 45 0.38
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64348062 original size:40 final size:40
Alignment explanation
Indices: 64348025--64348206 Score: 149
Period size: 40 Copynumber: 4.6 Consensus size: 40
64348015 GCTACTCGTT
* *
64348025 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGAACTTAGCCCGGTTATAGTAACTCGCA
* * * *
64348065 CAAATACCTTTGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGAACTTAGCCCGG-TTATAGTAACTCGCA
* * *
64348105 CAAATGCCTTCGG-GCTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGAACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * * *
64348144 CAAATGCCTTCGGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGAACTTAGCCCGGTTATAGTAAC-TCGCA
64348185 CAAA-GCCTTC-GAGACTTAGCCC
1 CAAATGCCTTCGGA-ACTTAGCCC
64348207 AGACATCATT
Statistics
Matches: 112, Mismatches: 23, Indels: 14
0.75 0.15 0.09
Matches are distributed among these distances:
39 35 0.31
40 66 0.59
41 11 0.10
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGAACTTAGCCCGGTTATAGTAACTCGCA
Found at i:64348142 original size:39 final size:39
Alignment explanation
Indices: 64348025--64348156 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 39
64348015 GCTACTCGTT
* * *
64348025 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGG-GCTTAGCCCGGATT-TAGTAACTCGCA
* * *
64348065 CAAATACCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCGCA
* *
64348105 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
64348144 CAAATGCCTTCGG
1 CAAATGCCTTCGG
64348157 ATCTTAGTCT
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 35 0.44
40 42 0.53
41 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:64352569 original size:22 final size:22
Alignment explanation
Indices: 64352541--64352605 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
64352531 GCAAATATGT
*
64352541 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
64352563 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
64352585 TTGGCACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
64352606 AATGATTGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:64352807 original size:41 final size:41
Alignment explanation
Indices: 64352750--64352828 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
64352740 AAGCCACCGG
* * *
64352750 TGGATCCACGGTCGTCAAGCAACCCTGCGATCCTTAATCGA
1 TGGATCCAAGGTCGTCAAACAACCATGCGATCCTTAATCGA
64352791 TGGATCCAAGGTCGTCAAACAACCATGCGATCCTTAAT
1 TGGATCCAAGGTCGTCAAACAACCATGCGATCCTTAAT
64352829 TTCTTCCTCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (41 bp):
TGGATCCAAGGTCGTCAAACAACCATGCGATCCTTAATCGA
Found at i:64353156 original size:28 final size:27
Alignment explanation
Indices: 64353088--64353250 Score: 102
Period size: 27 Copynumber: 6.0 Consensus size: 27
64353078 GGTAAATCTA
64353088 CAAACCAAGGGTATTTC-GATAATTTTT
1 CAAACCAAGGGTATTTCTG-TAATTTTT
*
64353115 CAAACCAATGGTATTTCTGTAATTTTT
1 CAAACCAAGGGTATTTCTGTAATTTTT
* ** *
64353142 GGAAGTCAAGGGTATTTCTATAATTTTGT
1 -CAAACCAAGGGTATTTCTGTAATTTT-T
* * *
64353171 -AAAGC-AGAGGTATTTTTGTAATTTCT
1 CAAACCAAG-GGTATTTCTGTAATTTTT
** *
64353197 -AAATTAAGGGTATTT-TGGTAATTTTA
1 CAAACCAAGGGTATTTCT-GTAATTTTT
*** * *
64353223 CAAATTGAGGGTATTTCAGTAAATTTT
1 CAAACCAAGGGTATTTCTGTAATTTTT
64353250 C
1 C
64353251 TTTATTATGG
Statistics
Matches: 109, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.01
26 20 0.18
27 65 0.60
28 22 0.20
29 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (27 bp):
CAAACCAAGGGTATTTCTGTAATTTTT
Found at i:64353235 original size:27 final size:26
Alignment explanation
Indices: 64353179--64353238 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
64353169 GTAAAGCAGA
*
64353179 GGTATTTTTGTAATTTCTAAATTAAG
1 GGTATTTTGGTAATTTCTAAATTAAG
*
64353205 GGTATTTTGGTAATTT-TACAAATTGAG
1 GGTATTTTGGTAATTTCT--AAATTAAG
64353232 GGTATTT
1 GGTATTT
64353239 CAGTAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 1 0.03
26 15 0.50
27 14 0.47
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.48
Consensus pattern (26 bp):
GGTATTTTGGTAATTTCTAAATTAAG
Found at i:64353894 original size:29 final size:29
Alignment explanation
Indices: 64353823--64353934 Score: 138
Period size: 29 Copynumber: 3.9 Consensus size: 29
64353813 ACCCATGCAT
* *
64353823 ACATGCATATGGCCCACTTGGCCCAA-TC
1 ACATTCATATGGCCCACTAGGCCCAATTC
* *
64353851 TCATTCATATAGCCCA-TCAGGCCCAATTC
1 ACATTCATATGGCCCACT-AGGCCCAATTC
64353880 ACATTCATATGGCCCACTAGGCCCAATTC
1 ACATTCATATGGCCCACTAGGCCCAATTC
* * *
64353909 ATATTCATATGACCCATTAGGCCCAA
1 ACATTCATATGGCCCACTAGGCCCAA
64353935 ATAACCTTTA
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 20 0.28
29 50 0.69
30 1 0.01
ACGTcount: A:0.29, C:0.33, G:0.13, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAATTC
Found at i:64353934 original size:58 final size:57
Alignment explanation
Indices: 64353823--64353934 Score: 156
Period size: 57 Copynumber: 1.9 Consensus size: 57
64353813 ACCCATGCAT
*
64353823 ACATGCATATGGCCCACTTGGCCCAATCTCATTCATATAGCCCATCAGGCCCAATTC
1 ACATGCATATGGCCCACTAGGCCCAATCTCATTCATATAGCCCATCAGGCCCAATTC
* *
64353880 ACATTCATATGGCCCACTAGGCCCAAT-TCATATTCATAT-GACCCATTAGGCCCAA
1 ACATGCATATGGCCCACTAGGCCCAATCTC--ATTCATATAG-CCCATCAGGCCCAA
64353935 ATAACCTTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
56 2 0.04
57 26 0.53
58 21 0.43
ACGTcount: A:0.29, C:0.33, G:0.13, T:0.25
Consensus pattern (57 bp):
ACATGCATATGGCCCACTAGGCCCAATCTCATTCATATAGCCCATCAGGCCCAATTC
Found at i:64354184 original size:23 final size:22
Alignment explanation
Indices: 64354151--64354203 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 22
64354141 CAGCCAAACT
*
64354151 TTTTG-CTTTTTGACTTTTCGGC
1 TTTTGCCTTTTAGA-TTTTCGGC
64354173 ATTTTGCCTTTTCAGATTTTCGGC
1 -TTTTGCCTTTT-AGATTTTCGGC
64354197 TTTTGCC
1 TTTTGCC
64354204 GATCTACTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 12 0.44
24 13 0.48
25 2 0.07
ACGTcount: A:0.08, C:0.21, G:0.17, T:0.55
Consensus pattern (22 bp):
TTTTGCCTTTTAGATTTTCGGC
Found at i:64357002 original size:38 final size:37
Alignment explanation
Indices: 64356923--64357039 Score: 146
Period size: 38 Copynumber: 3.1 Consensus size: 37
64356913 ATATTTGATG
*
64356923 TATATCCAGG-TTTATCCCGCAGGCTTGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTGTGCTGGTAT
* *
64356959 TATATCCGGGTTTTATCACGCAGGCTTCGCGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTT-GTGCTGGTAT
* ** *
64356997 TATATCTGGGTTAAATCCCGCAGGCTTAGTACTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTT-GTGCTGGTAT
64357035 TATAT
1 TATAT
64357040 TCGAGCTTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
36 9 0.13
37 15 0.22
38 45 0.65
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.36
Consensus pattern (37 bp):
TATATCCGGGTTTTATCCCGCAGGCTTGTGCTGGTAT
Found at i:64360954 original size:42 final size:42
Alignment explanation
Indices: 64360893--64360978 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
64360883 GATTCAGGTT
* *
64360893 GGTATGATGTATAGCGGAAGACAGATCATAATCTTACTCGTG
1 GGTATGATGTATAGAGGAAGACAAATCATAATCTTACTCGTG
64360935 GGTATGATGTATAGAGGAAGACAAATCATAATCTTACTCGTG
1 GGTATGATGTATAGAGGAAGACAAATCATAATCTTACTCGTG
64360977 GG
1 GG
64360979 ATTAAAGAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.28
Consensus pattern (42 bp):
GGTATGATGTATAGAGGAAGACAAATCATAATCTTACTCGTG
Found at i:64362037 original size:38 final size:38
Alignment explanation
Indices: 64361973--64362090 Score: 166
Period size: 38 Copynumber: 3.1 Consensus size: 38
64361963 ATATTTGATG
64361973 TATATCTGGG-TTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCTGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* * *
64362010 TATATCTGGGTTTTATCTCGTACGCTTCGTGCTGGTAT
1 TATATCTGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* ** *
64362048 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCTGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
64362086 TATAT
1 TATAT
64362091 TCGAGCTTAA
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
37 10 0.14
38 60 0.86
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.39
Consensus pattern (38 bp):
TATATCTGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
Found at i:64362120 original size:40 final size:38
Alignment explanation
Indices: 64361986--64362123 Score: 123
Period size: 38 Copynumber: 3.6 Consensus size: 38
64361976 ATCTGGGTTT
* * * * **
64361986 ATCCCGCAGGCTTCGTGCTGGTATTATATCTGGGTTTT
1 ATCCCGCAAGCTTAGTGCTGGTATTATATCCGGCTTAA
* * * * *
64362024 ATCTCGTACGCTTCGTGCTGGTATTATATCCGGGTTAA
1 ATCCCGCAAGCTTAGTGCTGGTATTATATCCGGCTTAA
* *
64362062 ATCCCGCAGGCTTAGTGCTGGTATTATATTCGAGCTTAA
1 ATCCCGCAAGCTTAGTGCTGGTATTATATCCG-GCTTAA
* *
64362101 AGTCCCGCAAGTTTTGTGCTGGT
1 A-TCCCGCAAGCTTAGTGCTGGT
64362124 GACTGGATTC
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
38 59 0.71
39 6 0.07
40 18 0.22
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.36
Consensus pattern (38 bp):
ATCCCGCAAGCTTAGTGCTGGTATTATATCCGGCTTAA
Found at i:64363083 original size:6 final size:6
Alignment explanation
Indices: 64363072--64363230 Score: 135
Period size: 6 Copynumber: 25.8 Consensus size: 6
64363062 GATCAAAATG
* *
64363072 AGAATC AGAATC AGAATC AGAATC AGAATC A-AGTGAC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* ** * *
64363121 AGAATC AGAATC AGAATT AGTTTAC AGAATC AGAATC AGTATC TGGTAA-C
1 AGAATC AGAATC AGAATC AGAAT-C AGAATC AGAATC AGAATC -AG-AATC
* * * *
64363171 AGAATC AGAATC AGAACC AGAATC AAAATC AGTATC AGGTAA-C AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
64363220 AGAATC AGAAT
1 AGAATC AGAAT
64363231 GTGAATGCAA
Statistics
Matches: 121, Mismatches: 22, Indels: 20
0.74 0.13 0.12
Matches are distributed among these distances:
5 6 0.05
6 101 0.83
7 10 0.08
8 4 0.03
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:64363114 original size:31 final size:31
Alignment explanation
Indices: 64363077--64363196 Score: 127
Period size: 31 Copynumber: 3.9 Consensus size: 31
64363067 AAATGAGAAT
*
64363077 CAGAATCAGAATCAGAATCAGAATCAAGTGA
1 CAGAATCAGAATCAGAATCAGAATCAAGTAA
*
64363108 CAGAATCAAAATCAGAATCAGAATC-AG-AA
1 CAGAATCAGAATCAGAATCAGAATCAAGTAA
* ** * **
64363137 TTAGTTTACAGAATCAGAATCAGTATCTGGTAA
1 -CAGAAT-CAGAATCAGAATCAGAATCAAGTAA
*
64363170 CAGAATCAGAATCAGAACCAGAATCAA
1 CAGAATCAGAATCAGAATCAGAATCAA
64363197 AATCAGTATC
Statistics
Matches: 70, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
29 1 0.01
30 5 0.07
31 58 0.83
32 4 0.06
33 2 0.03
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAAGTAA
Found at i:64363121 original size:37 final size:37
Alignment explanation
Indices: 64363072--64363159 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 37
64363062 GATCAAAATG
64363072 AGAATCAGAATCAGAATCAGAATCAGAATCAAG-TGAC
1 AGAATCAGAATCAGAATCAGAATCAGAAT-AAGTTGAC
* * *
64363109 AGAATCAAAATCAGAATCAGAATCAGAATTAGTTTAC
1 AGAATCAGAATCAGAATCAGAATCAGAATAAGTTGAC
64363146 AGAATCAGAATCAG
1 AGAATCAGAATCAG
64363160 TATCTGGTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 2 0.04
37 44 0.96
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATAAGTTGAC
Found at i:64363148 original size:25 final size:25
Alignment explanation
Indices: 64363120--64363230 Score: 94
Period size: 25 Copynumber: 4.7 Consensus size: 25
64363110 GAATCAAAAT
* *
64363120 CAGAATCAGAATCAGAAT-TAGTTTA
1 CAGAATCAGAATCAGAATCT-GGTAA
*
64363145 CAGAATCAGAATCAGTATCTGGTAA
1 CAGAATCAGAATCAGAATCTGGTAA
64363170 CAGAATCAGAATCAGAA-C------
1 CAGAATCAGAATCAGAATCTGGTAA
* * *
64363188 CAGAATCAAAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCTGGTAA
*
64363213 CAGAATTAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
64363231 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
18 15 0.22
19 1 0.01
24 1 0.01
25 51 0.74
26 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCTGGTAA
Found at i:64363192 original size:43 final size:43
Alignment explanation
Indices: 64363145--64363229 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
64363135 AATTAGTTTA
* *
64363145 CAGAATCAGAATCAGTATCTGGTAACAGAATCAGAATCAGAAC
1 CAGAATCAAAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
*
64363188 CAGAATCAAAATCAGTATCAGGTAACAGAATTAGAATCAGAA
1 CAGAATCAAAATCAGTATCAGGTAACAGAATCAGAATCAGAA
64363230 TGTGAATGCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (43 bp):
CAGAATCAAAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
Found at i:64363207 original size:12 final size:12
Alignment explanation
Indices: 64363063--64363137 Score: 80
Period size: 12 Copynumber: 6.2 Consensus size: 12
64363053 CAGAACTAGG
*
64363063 ATCAAAATGAGA
1 ATCAAAATCAGA
*
64363075 ATCAGAATCAGA
1 ATCAAAATCAGA
*
64363087 ATCAGAATCAGA
1 ATCAAAATCAGA
*
64363099 ATC-AAGTGACAGA
1 ATCAAAAT--CAGA
64363112 ATCAAAATCAGA
1 ATCAAAATCAGA
*
64363124 ATCAGAATCAGA
1 ATCAAAATCAGA
64363136 AT
1 AT
64363138 TAGTTTACAG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
11 2 0.04
12 42 0.78
13 7 0.13
14 3 0.06
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.17
Consensus pattern (12 bp):
ATCAAAATCAGA
Found at i:64363397 original size:27 final size:26
Alignment explanation
Indices: 64363349--64363400 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
64363339 GCGAGGCTGC
*
64363349 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
64363375 CAGATATATGTGCCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
64363401 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:64363666 original size:27 final size:28
Alignment explanation
Indices: 64363602--64363667 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 28
64363592 CAGTCACTTG
* *
64363602 CCCACAAGGGCAAAATAGTCATTTAACA
1 CCCACAAGGGTAAAATAGTAATTTAACA
* *
64363630 CCC-TAGGGGTAAAATAGTAA-TTATAC-
1 CCCACAAGGGTAAAATAGTAATTTA-ACA
64363656 CCCACAAGGGTA
1 CCCACAAGGGTA
64363668 TCTCGGTAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
26 6 0.20
27 21 0.70
28 3 0.10
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (28 bp):
CCCACAAGGGTAAAATAGTAATTTAACA
Found at i:64363878 original size:27 final size:27
Alignment explanation
Indices: 64363646--64363877 Score: 311
Period size: 27 Copynumber: 8.6 Consensus size: 27
64363636 GGGTAAAATA
* * * *
64363646 GTAATTATACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
64363673 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
64363700 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
64363727 GTATTTCTACCCTATAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
**
64363754 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
64363781 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
64363808 GTATTTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
64363835 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
64363862 GCATTTCTACCTTACA
1 GTAATTCTACCCTACA
64363878 AAAGTATTTC
Statistics
Matches: 183, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 183 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:64363888 original size:81 final size:81
Alignment explanation
Indices: 64363653--64363860 Score: 344
Period size: 81 Copynumber: 2.6 Consensus size: 81
64363643 ATAGTAATTA
* * *
64363653 TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGG
1 TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGG
64363718 GGTATTTCGGTATTTC
66 GGTATTTCGGTATTTC
* *
64363734 TACCCTATAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGG
1 TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGG
64363799 GGTATTTCGGTATTTC
66 GGTATTTCGGTATTTC
* * *
64363815 TACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
64363861 GGCATTTCTA
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 117 1.00
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.35
Consensus pattern (81 bp):
TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGG
GGTATTTCGGTATTTC
Found at i:64363974 original size:27 final size:27
Alignment explanation
Indices: 64363944--64364008 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
64363934 GGTACTTTGG
* *
64363944 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCAACGGTATTTCAA
* *
64363971 TAATTTTACAGGTCAACGGTATTTCAG
1 TAATTTTACAAGTCAACGGTATTTCAA
64363998 TAATTTTACAA
1 TAATTTTACAA
64364009 ATTAGGGGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAGTCAACGGTATTTCAA
Found at i:64364018 original size:27 final size:27
Alignment explanation
Indices: 64363988--64364273 Score: 349
Period size: 27 Copynumber: 10.6 Consensus size: 27
64363978 ACAGGTCAAC
** *
64363988 GGTATTTCAGTAATTTTACAAATTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
64364015 GGTATATTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
64364042 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
64364069 GGTATTTTGGTAATTTTACAAACTATG
1 GGTATTTTGGTAATTTTACAAACTAGG
* * *
64364096 GGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACTAGG
* *
64364123 GGTA-TTTAGTAATTTTATAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
** * **
64364149 GGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTTGGTAATTTTACAAACTAGG
*
64364176 GGTATTTTGGTAATTTTACAAGCTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
* * * *
64364203 GGTATTTTGGTGATTTTTATAAACCAAG
1 GGTATTTTGGT-AATTTTACAAACTAGG
* *
64364231 GGTATTTTAGCAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
64364258 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
64364274 GGTAAACTAA
Statistics
Matches: 219, Mismatches: 38, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
26 23 0.11
27 176 0.80
28 20 0.09
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:64364182 original size:107 final size:108
Alignment explanation
Indices: 64364014--64364280 Score: 392
Period size: 107 Copynumber: 2.5 Consensus size: 108
64364004 TACAAATTAG
* * ** * *
64364014 GGGTATATTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGG
1 GGGTAT-TTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
*
64364079 TAATTTTACAAACTATGGGTATTTTGGT-AATTTTATAAACCAA
65 TAATTTTACAAACTAGGGGTATTTTGGTGAATTTTATAAACCAA
* *
64364122 GGGTATTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGT
1 GGGTATTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
* *
64364187 AATTTTACAAGCTAGGGGTATTTTGGTGATTTTTATAAACCAA
66 AATTTTACAAACTAGGGGTATTTTGGTGAATTTTATAAACCAA
* *
64364230 GGGTATTTTAGCAATTTTACAAACTAGGGGTATTTTGGTAATTTGGTAAAC
1 GGGTA-TTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
64364281 TAAATTATTC
Statistics
Matches: 143, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
107 76 0.53
108 25 0.17
109 42 0.29
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (108 bp):
GGGTATTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGT
AATTTTACAAACTAGGGGTATTTTGGTGAATTTTATAAACCAA
Found at i:64364191 original size:134 final size:135
Alignment explanation
Indices: 64363933--64364282 Score: 371
Period size: 135 Copynumber: 2.6 Consensus size: 135
64363923 TGTAAATCAT
* ** * * ** *** *
64363933 GGGTACTTTGGT-AATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTCAACGGTATTTCA
1 GGGTATTTTGGTGAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAAGGGTATTT-A
* * * *
64363997 GTAATTTTACAAATTAGGGGTATATTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACA
65 GTAATTTTATAAACTAGGGGTATATTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACA
64364062 AACTAG
130 AACTAG
* * * * *
64364068 GGGTATTTTGGT-AATTTTACAAACTATGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTAG
1 GGGTATTTTGGTGAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAAGGGTATTTAG
* ** * *
64364132 TAATTTTATAAACTAGGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGTAATTTTACAA
66 TAATTTTATAAACTAGGGGTATATTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAA
*
64364197 GCTAG
131 ACTAG
* * * * *
64364202 GGGTATTTTGGTGATTTTTATAAACCAAGGGTATTTTAGCAATTTTACAAACTAGGGGTATTTTG
1 GGGTATTTTGGTGAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAAGGGTA-TTTA
**
64364267 GTAATTTGGTAAACTA
65 GTAATTTTATAAACTA
64364283 AATTATTCTA
Statistics
Matches: 177, Mismatches: 36, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
134 74 0.42
135 86 0.49
136 17 0.10
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (135 bp):
GGGTATTTTGGTGAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAAGGGTATTTAG
TAATTTTATAAACTAGGGGTATATTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAA
ACTAG
Found at i:64366251 original size:6 final size:6
Alignment explanation
Indices: 64366221--64366351 Score: 108
Period size: 6 Copynumber: 21.3 Consensus size: 6
64366211 AAGAAACATT
* *
64366221 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
64366268 GTGACAGA ATCAAA ATCAAA ATCAGA ATCAGA ATTAGTTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG--A ATCAGA ATCAGA
*
64366319 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
64366352 GTGAATGCAA
Statistics
Matches: 102, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
5 6 0.06
6 83 0.81
7 9 0.09
8 4 0.04
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:64366277 original size:19 final size:18
Alignment explanation
Indices: 64366242--64366351 Score: 84
Period size: 19 Copynumber: 5.9 Consensus size: 18
64366232 AATCAAAATG
64366242 AGAATCAG-AATCAGAATC
1 AGAATCAGTAA-CAGAATC
*
64366260 AGAATCAGGTGACAGAATC
1 AGAATCA-GTAACAGAATC
* *
64366279 AAAATCA-AAATCAGAATC
1 AGAATCAGTAA-CAGAATC
*
64366297 AGAATTAGTTAACAGAATC
1 AGAATCAG-TAACAGAATC
*
64366316 AGAATCAGTATCAGGTAA-C
1 AGAATCAGTAACA-G-AATC
64366335 AGAATCAG-AATCAGAAT
1 AGAATCAGTAA-CAGAAT
64366352 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
17 3 0.04
18 25 0.34
19 40 0.55
20 5 0.07
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (18 bp):
AGAATCAGTAACAGAATC
Found at i:64366285 original size:31 final size:31
Alignment explanation
Indices: 64366242--64366351 Score: 127
Period size: 31 Copynumber: 3.5 Consensus size: 31
64366232 AATCAAAATG
*
64366242 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
64366273 AGAATCAAAATCAAAATCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
*
64366303 AGTTAA-CAGAATCAGAATCAGTATCAGGTAAC
1 AG--AATCAGAATCAGAATCAGAATCAGGTAAC
64366335 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
64366352 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
29 1 0.02
30 5 0.08
31 52 0.80
32 5 0.08
33 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:64366315 original size:25 final size:25
Alignment explanation
Indices: 64366287--64366351 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
64366277 TCAAAATCAA
* *
64366287 AATCAGAATCAGAATTAGTTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
64366312 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
64366337 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
64366352 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.22
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:64366322 original size:43 final size:42
Alignment explanation
Indices: 64366221--64366301 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 42
64366211 AAGAAACATT
* *
64366221 ATCAGA-ACTAGAATCAAAATGAGAATCAGAATCAGAATCAGA
1 ATCAGATAC-AGAATCAAAATCAAAATCAGAATCAGAATCAGA
*
64366263 ATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAAT
1 ATCAGAT-ACAGAATCAAAATCAAAATCAGAATCAGAAT
64366302 TAGTTAACAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 5 0.15
43 27 0.79
44 2 0.06
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.17
Consensus pattern (42 bp):
ATCAGATACAGAATCAAAATCAAAATCAGAATCAGAATCAGA
Found at i:64366329 original size:37 final size:37
Alignment explanation
Indices: 64366242--64366342 Score: 123
Period size: 37 Copynumber: 2.7 Consensus size: 37
64366232 AATCAAAATG
*
64366242 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* * * *
64366279 AAAATCAAAATCAGAATCAGAATTAGTTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
*
64366316 AGAATCAGTATCAGGTAA-CAGAATCAG
1 AGAATCAGAATCA-G-AATCAGAATCAG
64366343 AATCAGAATG
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
37 42 0.79
38 9 0.17
39 2 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:64366618 original size:27 final size:26
Alignment explanation
Indices: 64366570--64366621 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
64366560 ACGAGGCTAC
*
64366570 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
64366596 CAGATATATGTGCCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
64366622 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:64366898 original size:27 final size:27
Alignment explanation
Indices: 64366868--64367115 Score: 232
Period size: 27 Copynumber: 9.2 Consensus size: 27
64366858 GGTAAAATGG
* * *
64366868 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
64366895 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
64366922 TAATTCAACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
64366949 TATTTCTACCCTACAAGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
64366976 TAATTCTACCCTATAGGGGTATTT-TA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
64367002 GTAATTCTACCCTACAGGGGTATTTCAA
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * * * * *
64367030 TATTTTTACCCTACAGGGGCATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
64367057 TATTTCTACCCTACAAGGGTATTTCAGCA
1 TAATTCTACCCTACAAGGGTATTTC-G-A
*
64367086 T--TTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
64367111 TAATT
1 TAATT
64367116 TTGTAAATCG
Statistics
Matches: 184, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 179 0.97
28 2 0.01
29 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:64366926 original size:54 final size:54
Alignment explanation
Indices: 64366868--64367115 Score: 273
Period size: 54 Copynumber: 4.6 Consensus size: 54
64366858 GGTAAAATGG
* * * * *
64366868 TAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAA
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
** * ***
64366922 TAATTCAACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTGG
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
* * ** *
64366976 TAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAA
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
* * * *
64367030 TATTTTTACCCTACAGGGGCATTTTGGTATTTCTACCCTACAAGGGTATTTC-A
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
** *
64367083 GCATTTCTACCCTACAAGGGTATTTCGGTAATT
1 TAATTT-TACCCTACAGGGGTATTTCGGTAATT
64367116 TTGTAAATCG
Statistics
Matches: 159, Mismatches: 34, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
53 4 0.03
54 155 0.97
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (54 bp):
TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
Found at i:64366994 original size:81 final size:80
Alignment explanation
Indices: 64366870--64367117 Score: 316
Period size: 81 Copynumber: 3.1 Consensus size: 80
64366860 TAAAATGGTA
* * * * * *
64366870 ATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCAACCCTA
1 ATTTTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTA
64366935 CAGGGGTATTTCGGT
66 CAGGGGTATTTCGGT
* *
64366950 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
1 ATTT-TACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
**
64367015 ACAGGGGTATTTCAAT
65 ACAGGGGTATTTCGGT
* * * * * *
64367031 ATTTTTACCCTACAGGGGCATTTTGGTATTTCTACCCTACAAGGGTATTTCAGCATTTCTACCCT
1 A-TTTTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
*
64367096 ACAAGGGTATTTCGGT
65 ACAGGGGTATTTCGGT
64367112 AATTTT
1 -ATTTT
64367118 GTAAATCGAG
Statistics
Matches: 144, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 4 0.03
81 136 0.94
82 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.36
Consensus pattern (80 bp):
ATTTTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTA
CAGGGGTATTTCGGT
Found at i:64367129 original size:27 final size:27
Alignment explanation
Indices: 64367097--64367431 Score: 235
Period size: 27 Copynumber: 12.7 Consensus size: 27
64367087 TTCTACCCTA
* **
64367097 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * **
64367124 CGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
64367151 CAAGGGTAATTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** **
64367178 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
64367205 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
64367232 CAGGGGTATTTTGTTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
64367258 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*
64367285 CTAAGGGTATTTTGGTAATTTTATAAA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
64367312 CAAAGGGTATTTTAGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
64367340 CAGGGGTATTTTGGTAATTTT----GT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
64367363 --A--GTATTTTGGTGATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
64367385 CCAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
64367412 CAGGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
64367432 GGTAAACTAA
Statistics
Matches: 249, Mismatches: 48, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
19 15 0.06
24 1 0.00
26 19 0.08
27 213 0.86
28 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Done.