Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 201 of 295
Found at i:64367394 original size:26 final size:27
Alignment explanation
Indices: 64367364--64367431 Score: 102
Period size: 26 Copynumber: 2.6 Consensus size: 27
64367354 TAATTTTGTA
* *
64367364 GTATTTTGGTGATTTTATAAACCA-GG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
64367390 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
64367417 GTATTTTGGTAATTT
1 GTATTTTGGTAATTT
64367432 GGTAAACTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 21 0.57
27 16 0.43
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:64367394 original size:45 final size:46
Alignment explanation
Indices: 64367318--64367405 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
64367308 TAAACAAAGG
*
64367318 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTA
1 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTGTA
* * *
64367364 GTATTTTGGTGATTTTATAAACCA-GGGTATTTTAGTAATTTT
1 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTT
64367406 ACAAACCAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
45 17 0.45
46 21 0.55
ACGTcount: A:0.27, C:0.06, G:0.19, T:0.48
Consensus pattern (46 bp):
GTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTGTA
Found at i:64367396 original size:72 final size:73
Alignment explanation
Indices: 64367291--64367431 Score: 257
Period size: 72 Copynumber: 1.9 Consensus size: 73
64367281 CAAACTAAGG
64367291 GTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTA
1 GTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTA
64367356 ATTTTGTA
66 ATTTTGTA
* *
64367364 GTATTTTGGTGATTTTATAAAC-CAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTA
1 GTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTA
64367428 ATTT
66 ATTT
64367432 GGTAAACTAA
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
72 45 0.68
73 21 0.32
ACGTcount: A:0.30, C:0.06, G:0.20, T:0.44
Consensus pattern (73 bp):
GTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTA
ATTTTGTA
Found at i:64371878 original size:46 final size:46
Alignment explanation
Indices: 64371811--64371901 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
64371801 TTATAAGAAG
* *
64371811 ATTCAGGTTGGTATGATGTATAGTGGAAGATAGATCATAATCTTAT
1 ATTCAGGTTGGTATGATGTATAGCGGAAGACAGATCATAATCTTAT
64371857 ATTCAGGTTGGTATGATGTATAGCGGAAGACAGATCATAATCTTA
1 ATTCAGGTTGGTATGATGTATAGCGGAAGACAGATCATAATCTTA
64371902 CTCGTGGGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.34
Consensus pattern (46 bp):
ATTCAGGTTGGTATGATGTATAGCGGAAGACAGATCATAATCTTAT
Found at i:64372965 original size:38 final size:38
Alignment explanation
Indices: 64372917--64373024 Score: 153
Period size: 38 Copynumber: 2.8 Consensus size: 38
64372907 TATATCTGGG
64372917 TTTATCCCGCAGGCTTCGTGCTGGTATTATATCCAGGT
1 TTTATCCCGCAGGCTTCGTGCTGGTATTATATCCAGGT
* *
64372955 TTTATCCCGCAGGCTTCGCGCTGGTATTATATCCGGGT
1 TTTATCCCGCAGGCTTCGTGCTGGTATTATATCCAGGT
** * * *
64372993 TAAATCCCGCAGTCTTAGTGCTGCTATTATAT
1 TTTATCCCGCAGGCTTCGTGCTGGTATTATAT
64373025 TCGAGTTTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (38 bp):
TTTATCCCGCAGGCTTCGTGCTGGTATTATATCCAGGT
Found at i:64373054 original size:40 final size:39
Alignment explanation
Indices: 64372920--64373057 Score: 147
Period size: 38 Copynumber: 3.6 Consensus size: 39
64372910 ATCTGGGTTT
* *
64372920 ATCCCGCAGGCTTCGTGCTGGTATTATA-TCCAGGTTT-T
1 ATCCCGCAGGCTTCGTGCTGGTATTATATTCGA-GTTTAA
* * *
64372958 ATCCCGCAGGCTTCGCGCTGGTATTATATCCG-GGTTAA
1 ATCCCGCAGGCTTCGTGCTGGTATTATATTCGAGTTTAA
* * *
64372996 ATCCCGCAGTCTTAGTGCTGCTATTATATTCGAGTTTAA
1 ATCCCGCAGGCTTCGTGCTGGTATTATATTCGAGTTTAA
* *
64373035 AGTCCCGCAGGTTTTGTGCTGGT
1 A-TCCCGCAGGCTTCGTGCTGGT
64373058 GACTGGATTC
Statistics
Matches: 81, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
37 3 0.04
38 54 0.67
39 7 0.09
40 17 0.21
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (39 bp):
ATCCCGCAGGCTTCGTGCTGGTATTATATTCGAGTTTAA
Found at i:64374800 original size:34 final size:33
Alignment explanation
Indices: 64374762--64374829 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 33
64374752 TTGCGATATT
*
64374762 AGTGTGGGCCTTAGCCCAATACAGTAACAGTATC
1 AGTGTGGGCCTTACCCCAATACAGT-ACAGTATC
* * *
64374796 AGTGTGGGCTTTACCCCATTTCAGTACAGTATC
1 AGTGTGGGCCTTACCCCAATACAGTACAGTATC
64374829 A
1 A
64374830 AAAATGCCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 9 0.30
34 21 0.70
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (33 bp):
AGTGTGGGCCTTACCCCAATACAGTACAGTATC
Found at i:64381023 original size:40 final size:40
Alignment explanation
Indices: 64380960--64381093 Score: 205
Period size: 40 Copynumber: 3.4 Consensus size: 40
64380950 CGGTTATTTG
*
64380960 TGGCACTTAGTGTGCGATACGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
* *
64381000 TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
* * *
64381040 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
*
64381080 CGGCACTTAGTGTG
1 TGGCACTTAGTGTG
64381094 TGAGATATCG
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
Found at i:64385091 original size:46 final size:46
Alignment explanation
Indices: 64385024--64385173 Score: 273
Period size: 46 Copynumber: 3.3 Consensus size: 46
64385014 TTGTAATTCA
*
64385024 TTTACCTCATATCCATCTCATACACGTTTCACATTAGCCATTCGGC
1 TTTACCTCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGC
64385070 TTTACCTCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGC
1 TTTACCTCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGC
*
64385116 TTTACCTCATATCCATCTCATACACATTTCGCATTAGCCATTCGGC
1 TTTACCTCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGC
*
64385162 TTTACCACATAT
1 TTTACCTCATAT
64385174 ATACACATCC
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 101 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
TTTACCTCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGC
Found at i:64385216 original size:22 final size:22
Alignment explanation
Indices: 64385190--64385311 Score: 59
Period size: 22 Copynumber: 5.3 Consensus size: 22
64385180 ATCCACGTTC
64385190 ATCACATTGGCAATTCGGCCTT
1 ATCACATTGGCAATTCGGCCTT
* * * *
64385212 ATCACATATATGCATGTTC-ACATT
1 ATCACAT-T-GGCA-ATTCGGCCTT
* *
64385236 CATCACATTGGCCATTCGGCCAT
1 -ATCACATTGGCAATTCGGCCTT
* * *
64385259 ATCACATATATGCATATTC-ACATT
1 ATCACAT-T-GGCA-ATTCGGCCTT
*
64385283 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCAATTCGGCCTT
*
64385306 TTCACA
1 ATCACA
64385312 CATATGCATG
Statistics
Matches: 70, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 26 0.37
23 11 0.16
24 12 0.17
25 21 0.30
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCAATTCGGCCTT
Found at i:64385218 original size:47 final size:47
Alignment explanation
Indices: 64385187--64385989 Score: 1402
Period size: 47 Copynumber: 17.2 Consensus size: 47
64385177 CACATCCACG
* *
64385187 TTCATCACATTGGCAATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
64385234 TTCATCACATTGGCCATTCGGCCATATCACATATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
64385281 TTCATCACATTGGCCATTCGGCCTTTTCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
64385328 TTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
64385375 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
64385422 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
64385469 TTCTTCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
64385516 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
64385563 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
64385610 TTCATCACATTGGCCATTCGACCTTAT--CACATAT--ATG--CATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
64385651 TTCATCACATTTGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
64385698 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
64385745 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
64385792 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
64385839 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
64385886 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
64385933 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
64385980 TTCATCACAT
1 TTCATCACAT
64385990 AAAATCCTAA
Statistics
Matches: 722, Mismatches: 28, Indels: 12
0.95 0.04 0.02
Matches are distributed among these distances:
41 28 0.04
43 9 0.01
45 9 0.01
47 676 0.94
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:64385384 original size:23 final size:23
Alignment explanation
Indices: 64385357--64385431 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
64385347 GGCCTTATCA
64385357 CACATATGCATGTTCACATTCAT
1 CACATATGCATGTTCACATTCAT
* *
64385380 CACAT-TGGCCA--TTCGGCCTT-AT
1 CACATAT-G-CATGTTC-ACATTCAT
64385402 CACACATATGCATGTTCACATTCAT
1 --CACATATGCATGTTCACATTCAT
64385427 CACAT
1 CACAT
64385432 TGGCCATTCG
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
22 6 0.15
23 16 0.41
24 11 0.28
25 6 0.15
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (23 bp):
CACATATGCATGTTCACATTCAT
Found at i:64391370 original size:40 final size:41
Alignment explanation
Indices: 64391290--64391432 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 41
64391280 AATGATGTCT
* * * *
64391290 GGGCTAAGTCCCGAGGGC-TTTGTGCTAAGTGACCAT-ATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAATCC
*
64391330 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAATCC
*
64391370 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCC
*
64391410 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
64391433 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
39 1 0.01
40 78 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (41 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCC
Found at i:64391788 original size:47 final size:47
Alignment explanation
Indices: 64391657--64392161 Score: 794
Period size: 47 Copynumber: 10.6 Consensus size: 47
64391647 AAGGGTTGGT
* * *
64391657 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64391704 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
64391753 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64391800 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
64391849 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
64391898 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
64391945 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64391992 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
64392041 AATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
64392088 AATGTGAAAGTGTATATATGTGACAGGGCCGAATGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
64392135 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
64392162 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 24, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 245 0.57
49 183 0.43
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:64391821 original size:96 final size:96
Alignment explanation
Indices: 64391657--64392161 Score: 838
Period size: 96 Copynumber: 5.3 Consensus size: 96
64391647 AAGGGTTGGT
*
64391657 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
64391722 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
64391753 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
64391818 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
64391849 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
64391912 TATATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64391945 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
64392010 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
64392041 AATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * *
64392104 TATGTGACAGGGCCGAATGGCCAACGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
64392135 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
64392162 TCCCGAAGGG
Statistics
Matches: 387, Mismatches: 18, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
94 99 0.26
96 243 0.63
98 45 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:64392006 original size:143 final size:143
Alignment explanation
Indices: 64391657--64392161 Score: 879
Period size: 143 Copynumber: 3.5 Consensus size: 143
64391647 AAGGGTTGGT
*
64391657 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
64391722 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
64391787 GGCCAATGTGATG
131 GGCCGATGTGATG
* *
64391800 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
64391865 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
64391930 ATAGCCGATGTGATG
129 ATGGCCGATGTGATG
64391945 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
64392010 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64392075 GGCCGATGTGATG
131 GGCCGATGTGATG
* * * *
64392088 AATGTGAAAGTGTATATATGTGACAGGGCCGAATGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
64392152 -ATGTGATAAG
66 TATGTGATAAG
64392162 TCCCGAAGGG
Statistics
Matches: 346, Mismatches: 14, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
141 10 0.03
142 1 0.00
143 198 0.57
145 137 0.40
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:64394802 original size:40 final size:40
Alignment explanation
Indices: 64394759--64395194 Score: 683
Period size: 40 Copynumber: 10.9 Consensus size: 40
64394749 ACACATCATC
* * *
64394759 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * *
64394799 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
64394839 AGCACGTATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * *
64394879 TGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
64394919 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
** * *
64394959 AGCACGAATGCTCTTCGAAACTTAGCTCAGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
64394999 AGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCATT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
64395039 AGCACGAATGCTCTTCGGGACTTAGCTCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
64395079 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
64395119 AGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
64395159 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
64395195 ATAACTCTCA
Statistics
Matches: 363, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 363 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:64396675 original size:46 final size:46
Alignment explanation
Indices: 64396608--64396757 Score: 264
Period size: 46 Copynumber: 3.3 Consensus size: 46
64396598 TTGTAATTCA
*
64396608 TTTACCTCATATCCATCTCATACACGTTTCACATTAGCCATTCGGC
1 TTTACCTCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGC
64396654 TTTACCTCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGC
1 TTTACCTCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGC
* *
64396700 TTTACCTCATACCCATCTCATACACATTTCGCATTAGCCATTCGGC
1 TTTACCTCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGC
*
64396746 TTTACCACATAT
1 TTTACCTCATAT
64396758 ATACACATCC
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 99 1.00
ACGTcount: A:0.24, C:0.33, G:0.09, T:0.35
Consensus pattern (46 bp):
TTTACCTCATATCCATCTCATACACGTTTCGCATTAGCCATTCGGC
Found at i:64396800 original size:22 final size:22
Alignment explanation
Indices: 64396774--64396895 Score: 68
Period size: 22 Copynumber: 5.3 Consensus size: 22
64396764 ATCCACGTTC
64396774 ATCACATTGGCAATTCAGCCTT
1 ATCACATTGGCAATTCAGCCTT
* * *
64396796 ATCACATATATGCATGTTCA-CATT
1 ATCACAT-T-GGCA-ATTCAGCCTT
* *
64396820 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCAATTCAGCCTT
* *
64396843 ATCACATATATGCATATTCA-CATT
1 ATCACAT-T-GGCA-ATTCAGCCTT
* *
64396867 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCAATTCAGCCTT
*
64396890 TTCACA
1 ATCACA
64396896 CATATGCATG
Statistics
Matches: 73, Mismatches: 17, Indels: 20
0.66 0.15 0.18
Matches are distributed among these distances:
22 26 0.36
23 12 0.16
24 13 0.18
25 22 0.30
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCAATTCAGCCTT
Found at i:64396822 original size:47 final size:47
Alignment explanation
Indices: 64396771--64397109 Score: 570
Period size: 47 Copynumber: 7.2 Consensus size: 47
64396761 CACATCCACG
* * *
64396771 TTCATCACATTGGCAATTCAGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
64396818 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
64396865 TTCATCACATTGGCCATTCGGCCTTTTCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
64396912 TTCTTCACAGTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
64396959 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
64397006 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
64397053 TTCATCACATTGGCCAGTCGGCCTTATCACATATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
64397100 TTCATCACAT
1 TTCATCACAT
64397110 AAAATCCTAA
Statistics
Matches: 276, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:64396824 original size:25 final size:24
Alignment explanation
Indices: 64396796--64396874 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 24
64396786 ATTCAGCCTT
64396796 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCAT-TTCACATTC
* * *
64396821 ATCACAT-T-GGCCA-TTCGGCCTT-
1 ATCACATATATG-CATTTC-ACATTC
64396843 ATCACATATATGCATATTCACATTC
1 ATCACATATATGCAT-TTCACATTC
64396868 ATCACAT
1 ATCACAT
64396875 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 10 0.24
23 7 0.17
24 7 0.17
25 17 0.41
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (24 bp):
ATCACATATATGCATTTCACATTC
Found at i:64396853 original size:94 final size:94
Alignment explanation
Indices: 64396731--64397109 Score: 569
Period size: 94 Copynumber: 4.0 Consensus size: 94
64396721 ACACATTTCG
* * * * * * * * * *
64396731 CATTAGCCATTCGGCTTTACCACATATATACACATCCACGTTCATCACATTGGCAATTCAGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATGCATATTCACATTCATCACATTGGCCATTCGGCCTT
* *
64396796 ATCACATATATGCATGTTCACATTCATCA
66 ATCACACATATGCATATTCACATTCATCA
*
64396825 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATGCATATTCACATTCATCACATTGGCCATTCGGCCTT
* * *
64396890 TTCACACATATGCATGTTCACATTCTTCA
66 ATCACACATATGCATATTCACATTCATCA
* *
64396919 CAGTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATGCATATTCACATTCATCACATTGGCCATTCGGCCTT
64396984 ATCACACATATGCATATTCACATTCATCA
66 ATCACACATATGCATATTCACATTCATCA
* *
64397013 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCAGTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATGCATATTCACATTCATCACATTGGCCATTCGGCCTT
*
64397078 ATCACATATATGCATATTCACATTCATCA
66 ATCACACATATGCATATTCACATTCATCA
64397107 CAT
1 CAT
64397110 AAAATCCTAA
Statistics
Matches: 264, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 264 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATATTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATGCATATTCACATTCATCA
Found at i:64396965 original size:25 final size:24
Alignment explanation
Indices: 64396937--64397061 Score: 63
Period size: 23 Copynumber: 5.2 Consensus size: 24
64396927 ATTCGGCCTT
64396937 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCAT-TTCACATTC
* *
64396962 AT--CACAT-TGGCCA-TTCGGCCTT-
1 ATCACACATAT-G-CATTTC-ACATTC
64396984 ATCACACATATGCATATTCACATTC
1 ATCACACATATGCAT-TTCACATTC
* *
64397009 AT--CACAT-TGGCCA-TTCGGCCTT-
1 ATCACACATAT-G-CATTTC-ACATTC
64397031 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCAT-TTCACATTC
64397056 ATCACA
1 ATCACA
64397062 TTGGCCAGTC
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 12 0.16
23 22 0.30
24 22 0.30
25 18 0.24
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (24 bp):
ATCACACATATGCATTTCACATTC
Found at i:64396989 original size:22 final size:22
Alignment explanation
Indices: 64396962--64397036 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
64396952 GTTCACATTC
64396962 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
64396984 ATCACACATAT-GCATATTC-ACATT
1 AT--CACAT-TGGC-CATTCGGCCTT
64397008 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
64397031 ATCACA
1 ATCACA
64397037 CATATGCATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 13 0.32
23 10 0.25
24 10 0.25
25 7 0.17
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:64404960 original size:18 final size:18
Alignment explanation
Indices: 64404934--64404971 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
64404924 ACCGAACACA
*
64404934 TAAATAATTTTTCAAAGT
1 TAAACAATTTTTCAAAGT
*
64404952 TAAACAATTTTTCTAAGT
1 TAAACAATTTTTCAAAGT
64404970 TA
1 TA
64404972 CAAAGGTCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (18 bp):
TAAACAATTTTTCAAAGT
Found at i:64406291 original size:42 final size:41
Alignment explanation
Indices: 64406196--64406347 Score: 126
Period size: 44 Copynumber: 3.6 Consensus size: 41
64406186 CCAACATCCT
* * * * * *
64406196 AGACGTGGTTTTACATGTAATCAAATATCGATGCTAGTGTCCT
1 AGACATGGTCTTACACGAAATCAAATA-CGATGC-AATGTCCC
* * *
64406239 AGATAGGGTCTTACACGAAATCAAATACGATGTCGATGTCCC
1 AGACATGGTCTTACACGAAATCAAATACGATG-CAATGTCCC
* *
64406281 AGACATGGTCTTACACGTAAGTCTCAAAT-CGATGCCAACGTCCC
1 AGACATGGTCTTACACG-AA--ATCAAATACGATG-CAATGTCCC
*
64406325 AGACGTGGTCTTACACGAAATCA
1 AGACATGGTCTTACACGAAATCA
64406348 CATAGCGGAA
Statistics
Matches: 88, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
41 3 0.03
42 25 0.28
43 26 0.30
44 28 0.32
45 6 0.07
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (41 bp):
AGACATGGTCTTACACGAAATCAAATACGATGCAATGTCCC
Found at i:64409646 original size:430 final size:430
Alignment explanation
Indices: 64408830--64409690 Score: 1305
Period size: 430 Copynumber: 2.0 Consensus size: 430
64408820 TACCCGGATG
* * * *
64408830 TACAGATAAACGACTGTTGTGAGCTTTGTTCAAAATCATCTGAATTAACTCTGAATTTCTCAGAA
1 TACAGATAAACGACTATTGTGAGCTTTGTTCAAAATCATCTAAATCAACTCTAAATTTCTCAGAA
* * ** * *
64408895 CACAAATTCGACCTCGAAATCTCAAACAGTTGTCATTATCAATTTGATATTTAGAATCAAAATCC
66 CACAAATTCAACCTCGAAATCTCAAACAATCATCATTATCAATTCGATATTCAGAATCAAAATCC
* *
64408960 AAATTATACTGAGCTCGTTTTGCTATTATCTCATTATCAACTTTCTTAACATCAATAATTTGTTG
131 AAATTATACTGAGCTCGTTTTGCTATTATCTCATTATCAACTTTCTGAACATCAATAATCTGTTG
* * ** * *
64409025 TAAAAACAACGGTCTCGCTTTCAATTTGGCTAAAATCGGACCATCATTGGATAAAATTAAATGAG
196 TAAAAACAACAGTCTCACTTTCAATTCAGCTAAAATCGAACCATCATTGGACAAAATTAAATGAG
* *
64409090 TATTCATCACACACAATACAAACAATGATTTTCAACTTCAAGAATGAGCAACAACATTTGCTTTT
261 TATTCATCACACACAATACAAACAATGATTTCCAACTTCAAGAATCAGCAACAACATTTGCTTTT
*
64409155 CCCAGATGATAATCGATAACAAGCTTATAATCTTTTAGTAGTTCTAGCCATCTTCTCTGTCACAG
326 CCCAGATGATAATCGATAACAAGCTTATAATCTTTTAGCAGTTCTAGCCATCTTCTCTGTCACAG
* *
64409220 GTTCAAGTCTTTCTGAGCCATAAGATATTTCAAACTTTTA
391 ATTCAAATCTTTCTGAGCCATAAGATATTTCAAACTTTTA
* * *
64409260 TACAGGTAAATGACTATTGTGAGTTTTGTTCAAAATCATCTAAATCAACTCTAAATTTCTCATG-
1 TACAGATAAACGACTATTGTGAGCTTTGTTCAAAATCATCTAAATCAACTCTAAATTTCTCA-GA
*
64409324 ACACAAA-TCTAACCTCGAAATCTCAAACAATCATCATTATCAATTCGATATTCAGACTCAAAAT
65 ACACAAATTC-AACCTCGAAATCTCAAACAATCATCATTATCAATTCGATATTCAGAATCAAAAT
* *
64409388 CCAAATTATACTGAGCTCGTTTTGCTATTATCTCATTATCAAGTTTCTGAGCATCAATAATCTGT
129 CCAAATTATACTGAGCTCGTTTTGCTATTATCTCATTATCAACTTTCTGAACATCAATAATCTGT
* * *
64409453 TGTAAAAATAGCAGTCTCACTTTCAATTCAGCTAAATTCGAACCATCATTGGACAAAATTAAATG
194 TGTAAAAACAACAGTCTCACTTTCAATTCAGCTAAAATCGAACCATCATTGGACAAAATTAAATG
*** * * * *
64409518 AGTATTCATTGTACGCAATACAAACAATGATTTCCGAC-TCAAAGCATCAGCAACAACATTTTCT
259 AGTATTCATCACACACAATACAAACAATGATTTCCAACTTC-AAGAATCAGCAACAACATTTGCT
64409582 TTTCCCAGATGATAATCGATAACAAGCTTATAATCTTTTAGCAGTTCTAGCCATCTTCTCTGTCA
323 TTTCCCAGATGATAATCGATAACAAGCTTATAATCTTTTAGCAGTTCTAGCCATCTTCTCTGTCA
* *
64409647 CAGATTCAAATCTTTCTGAGTCATTAGATATTTCAAACTTTTA
388 CAGATTCAAATCTTTCTGAGCCATAAGATATTTCAAACTTTTA
64409690 T
1 T
64409691 GATCAGAATA
Statistics
Matches: 387, Mismatches: 41, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
429 4 0.01
430 382 0.99
431 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.34
Consensus pattern (430 bp):
TACAGATAAACGACTATTGTGAGCTTTGTTCAAAATCATCTAAATCAACTCTAAATTTCTCAGAA
CACAAATTCAACCTCGAAATCTCAAACAATCATCATTATCAATTCGATATTCAGAATCAAAATCC
AAATTATACTGAGCTCGTTTTGCTATTATCTCATTATCAACTTTCTGAACATCAATAATCTGTTG
TAAAAACAACAGTCTCACTTTCAATTCAGCTAAAATCGAACCATCATTGGACAAAATTAAATGAG
TATTCATCACACACAATACAAACAATGATTTCCAACTTCAAGAATCAGCAACAACATTTGCTTTT
CCCAGATGATAATCGATAACAAGCTTATAATCTTTTAGCAGTTCTAGCCATCTTCTCTGTCACAG
ATTCAAATCTTTCTGAGCCATAAGATATTTCAAACTTTTA
Found at i:64415761 original size:26 final size:26
Alignment explanation
Indices: 64415725--64415776 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
64415715 GATTACGTGT
64415725 AAGACCATGTCTAGGACACTGGCATC
1 AAGACCATGTCTAGGACACTGGCATC
64415751 AAGACCATGTCTAGGACACTGGCATC
1 AAGACCATGTCTAGGACACTGGCATC
64415777 GTATTATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.23, T:0.19
Consensus pattern (26 bp):
AAGACCATGTCTAGGACACTGGCATC
Found at i:64415840 original size:43 final size:43
Alignment explanation
Indices: 64415751--64415843 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 43
64415741 CACTGGCATC
* *
64415751 AAGACCATGTCTAGGACACTGGCATCGTATTATGATTTCGTAT
1 AAGACCATGTCTAGGACAATGGCATCGTATTATGATTTCATAT
* * *
64415794 AAGACCCTGTCTGGGACAATGGCATCG-A-TATGTATTTACATGT
1 AAGACCATGTCTAGGACAATGGCATCGTATTATG-ATTT-CATAT
64415837 AAGACCA
1 AAGACCA
64415844 AATCTGGGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
41 4 0.10
42 5 0.12
43 33 0.79
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
AAGACCATGTCTAGGACAATGGCATCGTATTATGATTTCATAT
Found at i:64418768 original size:46 final size:46
Alignment explanation
Indices: 64418678--64418804 Score: 152
Period size: 46 Copynumber: 2.7 Consensus size: 46
64418668 ACATTATGAG
64418678 AGCTAGTGTAAGACTATGTCTGGGATATGGCATCGGCATTGAGACGAGT-
1 AGCTAGTGTAAGAC-ATGTCTGGGATAT-GCATCGGCATTGAGAC-A-TA
* * *
64418727 AG-TAGTATAAGACATGTCTGGGACATGCATCGG-TTTGGAGACATA
1 AGCTAGTGTAAGACATGTCTGGGATATGCATCGGCATT-GAGACATA
*
64418772 AGCCAGTGTAAGACATGTCTGGGATATGCATCG
1 AGCTAGTGTAAGACATGTCTGGGATATGCATCG
64418805 ACTACAAGAG
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
44 1 0.01
45 5 0.07
46 39 0.57
47 12 0.17
48 10 0.14
49 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGATATGCATCGGCATTGAGACATA
Found at i:64421037 original size:79 final size:80
Alignment explanation
Indices: 64420902--64421125 Score: 262
Period size: 79 Copynumber: 2.8 Consensus size: 80
64420892 TGAATGATGT
* * * * *
64420902 CCGGGCTAAGTCCCGAAGGCTTTGTGCTA--AGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTG-G-TACGAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
64420964 TTGTGCGAGTTACTA-ATT
63 TTGTGCGAGTTACTATA-A
* *
64420982 TCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
64421045 GTGCGAGTTACTATAA
65 GTGCGAGTTACTATAA
* * *
64421061 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
64421126 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
77 2 0.02
78 3 0.02
79 60 0.48
80 57 0.46
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:64421132 original size:40 final size:39
Alignment explanation
Indices: 64420902--64421125 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
64420892 TGAATGATGT
* * * *
64420902 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
64420942 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* * *
64420982 TCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64421020 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
64421061 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64421101 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
64421126 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 33 0.20
40 119 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64421148 original size:119 final size:119
Alignment explanation
Indices: 64420908--64421158 Score: 296
Period size: 119 Copynumber: 2.1 Consensus size: 119
64420898 ATGTCCGGGC
*
64420908 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
** * *
64420973 TTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAAATCCGGGT
66 TTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGAGT
* * * *
64421027 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * *
64421090 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-AGT
64 AGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAATCCGAGT
* *
64421146 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
64421159 TACGTGATTT
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 78 0.69
120 32 0.28
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
TTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGAGT
Found at i:64429229 original size:40 final size:39
Alignment explanation
Indices: 64428999--64429222 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
64428989 CGAATGTTGT
* * * *
64428999 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
64429039 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
64429079 CCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64429117 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64429158 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64429198 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
64429223 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64429244 original size:119 final size:119
Alignment explanation
Indices: 64428998--64429255 Score: 310
Period size: 119 Copynumber: 2.2 Consensus size: 119
64428988 TCGAATGTTG
* * *
64428998 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTC
* *
64429063 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAAA
66 GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
64429117 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * *
64429180 TCGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TCGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
64429237 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
64429256 TACGTGATTT
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 85 0.71
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:64430594 original size:13 final size:13
Alignment explanation
Indices: 64430576--64430606 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
64430566 CCTCGTGTCC
64430576 GACTCCGGCGACG
1 GACTCCGGCGACG
64430589 GACTCCGGCGACG
1 GACTCCGGCGACG
64430602 GACTC
1 GACTC
64430607 GGGTACGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.39, G:0.35, T:0.10
Consensus pattern (13 bp):
GACTCCGGCGACG
Found at i:64451253 original size:40 final size:40
Alignment explanation
Indices: 64451153--64451366 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
64451143 TGGATGATAA
* * *
64451153 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATC
64451193 CGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
64451232 CGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATATC
* *
64451272 TGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
64451312 CGGGCTAAGT-CCGAAGGCATTTGAGC-AG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
**
64451350 C-GGCTAAACCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
64451367 TACTTGGTTG
Statistics
Matches: 158, Mismatches: 10, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
37 8 0.05
38 17 0.11
39 51 0.32
40 80 0.51
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:64451301 original size:80 final size:79
Alignment explanation
Indices: 64451149--64451334 Score: 281
Period size: 79 Copynumber: 2.4 Consensus size: 79
64451139 TATTTGGATG
*
64451149 ATAA-CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTAGTTCCGGGCAAGTCCCGAAGGCAT
64451213 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
* * *
64451227 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTA-TATCTGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGCGC-AAGTGACTAGT-TCCGGGC-AAGTCCCGAAGG
64451290 CATTTGTGCGAGTTACT
63 CATTTGTGCGAGTTACT
64451307 ATAACCGGGCTAAGT-CCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
64451335 AGCAGTAGCT
Statistics
Matches: 99, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
78 4 0.04
79 49 0.49
80 46 0.46
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTAGTTCCGGGCAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:64457733 original size:40 final size:40
Alignment explanation
Indices: 64457632--64457847 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
64457622 TGGATGATAA
* * *
64457632 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
64457672 CCAGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
64457711 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
* *
64457751 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64457791 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
64457830 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
64457848 TACTTGGTTG
Statistics
Matches: 159, Mismatches: 12, Indels: 12
0.87 0.07 0.07
Matches are distributed among these distances:
38 17 0.11
39 44 0.28
40 96 0.60
41 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:64459243 original size:22 final size:22
Alignment explanation
Indices: 64459215--64459266 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
64459205 ATTGGCACAA
64459215 AGCCATAATCAAGATAGCATAG
1 AGCCATAATCAAGATAGCATAG
* * * * *
64459237 AGCCATATTTAGGCTGGCATAG
1 AGCCATAATCAAGATAGCATAG
64459259 AGCCATAA
1 AGCCATAA
64459267 ACAGATTAAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (22 bp):
AGCCATAATCAAGATAGCATAG
Found at i:64464945 original size:23 final size:23
Alignment explanation
Indices: 64464915--64464990 Score: 86
Period size: 23 Copynumber: 3.3 Consensus size: 23
64464905 TAGGTCATTG
64464915 GAGCTTACCATTTCAGCTCG-TA
1 GAGCTTACCATTTCAGCTCGATA
*
64464937 TGAGCTTA-C-TGTTCAACTCGATA
1 -GAGCTTACCAT-TTCAGCTCGATA
* *
64464960 GAGCCTACCATTTCAGCTCAATA
1 GAGCTTACCATTTCAGCTCGATA
64464983 GAGCTTAC
1 GAGCTTAC
64464991 TGTTTATCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
21 1 0.02
22 15 0.34
23 27 0.61
24 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (23 bp):
GAGCTTACCATTTCAGCTCGATA
Found at i:64467214 original size:28 final size:28
Alignment explanation
Indices: 64467174--64467265 Score: 157
Period size: 28 Copynumber: 3.3 Consensus size: 28
64467164 ATGGGAGTAG
*
64467174 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATGTGAATGTGA
64467202 TTGGGCCTGATGGGCCATGTGAATGTGA
1 TTGGGCCTGATGGGCCATGTGAATGTGA
* *
64467230 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATGTGAATGTGA
64467258 TTGGGCCT
1 TTGGGCCT
64467266 AAAGGGGCCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.18, C:0.16, G:0.38, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATGTGAATGTGA
Found at i:64467612 original size:27 final size:27
Alignment explanation
Indices: 64467582--64467840 Score: 256
Period size: 27 Copynumber: 9.7 Consensus size: 27
64467572 TAATAAAGAG
*
64467582 AAATTACCAAAATACCCCCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
64467609 AAATTACCGAAGTACCC-CCAGTTTGT-
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
64467635 AAATTATCGAAAA-ACCCTCAATTTGTA
1 AAATTA-CCAAAATACCCTCGATTTGTA
*
64467662 AAATTACCAAAATACCCTCGA-TTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
*
64467688 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
64467715 AAATTATCAAAATACCCCCAATTTCTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
64467742 AAATTACCAAAATACCTTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * * *
64467769 AAATTATCGAAATGCCTTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
64467796 AAATTACCGAAACACCCCCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
64467823 AAATTATCGAAATACCCT
1 AAATTACCAAAATACCCT
64467841 TGTAGTGTAA
Statistics
Matches: 191, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
26 46 0.24
27 145 0.76
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:64467813 original size:81 final size:80
Alignment explanation
Indices: 64467582--64467840 Score: 265
Period size: 80 Copynumber: 3.2 Consensus size: 80
64467572 TAATAAAGAG
* * ** * *
64467582 AAATTACCAAAATACCCCCGATTTGTAAAATTACCGAAGTACCC-CCAGTTTGT-AAATTATCGA
1 AAATTACCAAAATACCCTC-AATTGTAAAATTACTAAAATACCCTCGA-TTTGTAAAATTATCGA
*
64467645 AAAACCCTCAATTTGTA
64 AAAACCCCCAATTTGTA
* *
64467662 AAATTACCAAAATACCCTCGATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATTATC-AAA
1 AAATTACCAAAATACCCTCAATTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAA
*
64467726 ATACCCCCAATTTCTA
66 A-ACCCCCAATTTGTA
* * * * * *
64467742 AAATTACCAAAATACCTTCAATTTGTAAAATTA-TCGAAATGCCTTTGATTTGTAAAATTACCGA
1 AAATTACCAAAATACCCTCAA-TTGTAAAATTACT-AAAATACCCTCGATTTGTAAAATTATCGA
* *
64467806 AACACCCCCGATTTGTA
64 AAAACCCCCAATTTGTA
* *
64467823 AAATTATCGAAATACCCT
1 AAATTACCAAAATACCCT
64467841 TGTAGTGTAA
Statistics
Matches: 149, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
79 27 0.18
80 60 0.40
81 59 0.40
82 3 0.02
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCCTCAATTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAA
AACCCCCAATTTGTA
Found at i:64471725 original size:40 final size:40
Alignment explanation
Indices: 64471656--64471832 Score: 286
Period size: 40 Copynumber: 4.5 Consensus size: 40
64471646 AAGTATCTTT
* *
64471656 GGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTC
*
64471695 GGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
64471735 GGGACTTAGCCCGGATATAGTTACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
64471775 GGGACTTAGCCCGGTTATAGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
64471815 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
64471833 CATTCGAATA
Statistics
Matches: 128, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 7 0.05
40 120 0.94
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
Found at i:64477879 original size:27 final size:27
Alignment explanation
Indices: 64477839--64478033 Score: 227
Period size: 27 Copynumber: 7.2 Consensus size: 27
64477829 AGGAAGCGTC
*
64477839 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
64477866 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
64477892 CCTGATGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAAATATCTGAT
* *
64477920 CTGGTGGCTCTTCCACATATATCTG-T
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
64477946 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAAATATCTGAT
*
64477974 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
64478000 CCTGGTGGCTCTACCAC-AATATCTGTAT
1 -CTGGTGGCTCTGCCACAAATATCTG-AT
64478028 CTGGTG
1 CTGGTG
64478034 ACTTCGTCAC
Statistics
Matches: 141, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
26 10 0.07
27 128 0.91
28 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:64477918 original size:54 final size:54
Alignment explanation
Indices: 64477836--64478033 Score: 335
Period size: 54 Copynumber: 3.7 Consensus size: 54
64477826 TGGAGGAAGC
*
64477836 GTCCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
64477890 GTCCTGATGGCTATGCCACAATTATCTGATCTGGTGGCTCTTCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
64477944 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
64477998 GTCCTGGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
64478034 ACTTCGTCAC
Statistics
Matches: 136, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
53 6 0.04
54 130 0.96
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:64480984 original size:41 final size:42
Alignment explanation
Indices: 64480925--64481038 Score: 140
Period size: 41 Copynumber: 2.7 Consensus size: 42
64480915 GTATATGTTA
** * *
64480925 TCATGTAAGACCATATCTGGGATATGGTGTTGATATGAGATT
1 TCATGTAAGACCATATCTGGGATATGGCATCGAAATGAGATT
* *
64480967 TCATGT-AGACCACATCTGGGACATGGCATCGAAATGAGATT
1 TCATGTAAGACCATATCTGGGATATGGCATCGAAATGAGATT
* * *
64481008 TCGTATAAGACCATATCTGAGATATGGCATC
1 TCATGTAAGACCATATCTGGGATATGGCATC
64481039 AATGTGAAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 33 0.55
42 27 0.45
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
TCATGTAAGACCATATCTGGGATATGGCATCGAAATGAGATT
Found at i:64481077 original size:42 final size:42
Alignment explanation
Indices: 64480973--64481079 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
64480963 GATTTCATGT
* **
64480973 AGACCACATCTGGGACATGGCATCGAAATGAGATTTCGTATA
1 AGACCACATCTGGGACATGGCATCGAAATGAAATCCCGTATA
* * * * *
64481015 AGACCATATCTGAGATATGGCATC-AATGTGAAATCCCGTGTA
1 AGACCACATCTGGGACATGGCATCGAA-ATGAAATCCCGTATA
*
64481057 AGACCACGTCTGGGACATGGCAT
1 AGACCACATCTGGGACATGGCAT
64481080 TGGCATCGTA
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
41 2 0.04
42 50 0.96
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (42 bp):
AGACCACATCTGGGACATGGCATCGAAATGAAATCCCGTATA
Found at i:64483474 original size:43 final size:41
Alignment explanation
Indices: 64483365--64483527 Score: 132
Period size: 43 Copynumber: 3.9 Consensus size: 41
64483355 AGCTCGTACA
* * ** *
64483365 ATGCC-ATATCCCAGATATGGT-TTACATGTTATCACATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA-ATA-CG
* *** *
64483406 ATGCCACTGTCCCAGACAAAATCTTACATGAAATCGATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATC-AAT-ACG
* *
64483449 ATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AA-ATCAATACG
* *
64483492 ATGCCAATGCCCCAGACATGGTCTTACATGTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
64483528 CATCTCGATA
Statistics
Matches: 96, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
41 9 0.09
42 11 0.11
43 67 0.70
44 6 0.06
45 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAATACG
Found at i:64487899 original size:47 final size:47
Alignment explanation
Indices: 64487845--64488033 Score: 297
Period size: 47 Copynumber: 4.0 Consensus size: 47
64487835 TTAGGATTTT
** * * **
64487845 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCTGAATGGGAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
64487892 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
*
64487939 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* *
64487986 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
64488033 A
1 A
64488034 CATGCATATG
Statistics
Matches: 134, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
Found at i:64487943 original size:79 final size:77
Alignment explanation
Indices: 64487859--64488118 Score: 225
Period size: 79 Copynumber: 3.1 Consensus size: 77
64487849 GATGAATGTG
* * *
64487859 AATGTGTATATATGAGATAAGGCTGAATGGGAAATGTGATGAATGTGAACATGCATATATGAGAT
1 AATGTG-ATATGTGAGATAAGGCTGAATGGG-AATGTGATGAATGTGAACATGCATATGTGTGAT
64487924 AAGGCCGAATGGCC
64 AAGGCCGAATGGCC
* *
64487938 AATGTGATGAATGTGAACATGCATATATG-TGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AATGTGAT--ATGTG---A-G-ATA-AGGCTG--AATG--G----G--AATGTGATGAATGTGAA
64488002 CATGCATATGTGTGATAAGGCCGAATGGCC
48 CATGCATATGTGTGATAAGGCCGAATGGCC
** * * *
64488032 AACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGAT
1 AATGTG-ATATGTGAGATAAGGCTGAATGG-GAATGTGATGAATGTGAACATGCATATGTGTGAT
64488097 AAGGCCGAATGGCC
64 AAGGCCGAATGGCC
64488111 AATGTGAT
1 AATGTGAT
64488119 GAATGTGAAT
Statistics
Matches: 146, Mismatches: 16, Indels: 39
0.73 0.08 0.19
Matches are distributed among these distances:
78 4 0.03
79 57 0.39
80 4 0.03
83 1 0.01
84 2 0.01
85 5 0.03
86 5 0.03
87 5 0.03
88 4 0.03
89 2 0.01
93 6 0.04
94 49 0.34
95 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (77 bp):
AATGTGATATGTGAGATAAGGCTGAATGGGAATGTGATGAATGTGAACATGCATATGTGTGATAA
GGCCGAATGGCC
Found at i:64487946 original size:94 final size:94
Alignment explanation
Indices: 64487845--64488255 Score: 521
Period size: 94 Copynumber: 4.5 Consensus size: 94
64487835 TTAGGATTTT
* * * **
64487845 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCTGAATGGGAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
64487910 TGCATATATGAGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
**
64487939 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
64488004 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
* *
64488033 A---CATGCA--T--ATGTG------T--GATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
64488083 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
*
64488112 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
64488177 TGCATATATGTGATAAGGCAGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
64488206 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCAAATGGCTAATG
1 ATGTGATGAATGT-GAATGTGCATATATGTGATAAGGCCGAATGGCCAATG
64488256 CGAAACGTGT
Statistics
Matches: 276, Mismatches: 25, Indels: 32
0.83 0.08 0.10
Matches are distributed among these distances:
79 66 0.24
81 1 0.00
82 4 0.01
84 1 0.00
86 4 0.01
87 3 0.01
89 1 0.00
91 4 0.01
92 1 0.00
94 188 0.68
95 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCCA
Found at i:64487992 original size:22 final size:22
Alignment explanation
Indices: 64487921--64487992 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
64487911 GCATATATGA
64487921 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
64487943 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
64487968 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
64487990 GAT
1 GAT
64487993 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:64488036 original size:32 final size:32
Alignment explanation
Indices: 64488000--64488065 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
64487990 GATGAATGTG
64488000 AACATGCATATGTGTGATAAGGCCGAATGGCC
1 AACATGCATATGTGTGATAAGGCCGAATGGCC
64488032 AACATGCATATGTGTGATAAGGCCGAATGGCC
1 AACATGCATATGTGTGATAAGGCCGAATGGCC
64488064 AA
1 AA
64488066 TGTGATGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.21
Consensus pattern (32 bp):
AACATGCATATGTGTGATAAGGCCGAATGGCC
Found at i:64488039 original size:126 final size:126
Alignment explanation
Indices: 64487906--64488159 Score: 463
Period size: 126 Copynumber: 2.0 Consensus size: 126
64487896 GATGAATGTG
64487906 AACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGAT
1 AACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGAT
*
64487971 AAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
66 AAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
64488032 AACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGAT
1 AACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGAT
*
64488097 AAGGCCGAATGGCCAATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCC
66 AAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
64488158 AA
1 AA
64488160 TGTGATGAAT
Statistics
Matches: 123, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 123 1.00
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (126 bp):
AACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGAT
AAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:64488088 original size:47 final size:47
Alignment explanation
Indices: 64488032--64488255 Score: 333
Period size: 47 Copynumber: 4.8 Consensus size: 47
64488022 CCGAATGGCC
*
64488032 AACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
64488079 AACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
64488126 AATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
64488173 AACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGG
1 AACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-G
* * * * * *
64488221 AA-GTGTATATATGTGGTAAAGCCAAATGGCTAATG
1 AACATGCATATATGTGATAAGGCCGAATGGCCAATG
64488256 CGAAACGTGT
Statistics
Matches: 164, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 161 0.98
48 3 0.02
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
AACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
Found at i:64488118 original size:22 final size:22
Alignment explanation
Indices: 64488044--64488165 Score: 72
Period size: 22 Copynumber: 5.3 Consensus size: 22
64488034 CATGCATATG
64488044 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
64488066 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
64488089 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
* * * *
64488113 TGTGATGAATG-TGAATATGCATATA
1 TGTGAT-AAGGCCGAAT-GGC-CA-A
64488138 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
64488160 TGTGAT
1 TGTGAT
64488166 GAATGTGAAC
Statistics
Matches: 74, Mismatches: 12, Indels: 28
0.65 0.11 0.25
Matches are distributed among these distances:
22 26 0.35
23 14 0.19
24 14 0.19
25 20 0.27
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:64488140 original size:25 final size:25
Alignment explanation
Indices: 64488065--64488190 Score: 79
Period size: 25 Copynumber: 5.3 Consensus size: 25
64488055 CGAATGGCCA
*
64488065 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAATATGCATAT
* * * * *
64488090 GTGTGAT-AAGGCCGAAT-GGC-CA-
1 ATGTGATGAATG-TGAATATGCATAT
64488112 ATGTGATGAATGTGAATATGCATAT
1 ATGTGATGAATGTGAATATGCATAT
* * * *
64488137 ATGTGAT-AAGGCCGAAT-GGC-CA-
1 ATGTGATGAATG-TGAATATGCATAT
*
64488159 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAATATGCATAT
64488184 ATGTGAT
1 ATGTGAT
64488191 AAGGCAGAAT
Statistics
Matches: 71, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 20 0.28
23 12 0.17
24 12 0.17
25 27 0.38
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAATATGCATAT
Found at i:64488163 original size:173 final size:173
Alignment explanation
Indices: 64487874--64488206 Score: 594
Period size: 173 Copynumber: 1.9 Consensus size: 173
64487864 GTATATATGA
* *
64487874 GATAAGGCTGAATGGGAAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
64487939 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
66 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
64488004 TGCATATGTGTGATAAGGCCGAATGGCCAACATGCATATGTGT
131 TGCATATATGTGATAAGGCAGAATGGCCAACATGCATATGTGT
* * *
64488047 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
*
64488112 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
66 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
64488177 TGCATATATGTGATAAGGCAGAATGGCCAA
131 TGCATATATGTGATAAGGCAGAATGGCCAA
64488207 TGTGATGAAC
Statistics
Matches: 152, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
173 152 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (173 bp):
GATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCAGAATGGCCAACATGCATATGTGT
Found at i:64488212 original size:22 final size:22
Alignment explanation
Indices: 64488091--64488212 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
64488081 CATGCATATG
*
64488091 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
* * * *
64488113 TGTGATGAATG-TGAATATGCATATA
1 TGTGAT-AAGGCAGAAT-GGC-CA-A
*
64488138 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
*
64488160 TGTGATGAATGTG-A-ACAT-GCATATA
1 TGTGAT-AA-G-GCAGA-ATGGC-CA-A
64488185 TGTGATAAGGCAGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
64488207 TGTGAT
1 TGTGAT
64488213 GAACGTGGAA
Statistics
Matches: 75, Mismatches: 11, Indels: 28
0.66 0.10 0.25
Matches are distributed among these distances:
22 25 0.33
23 16 0.21
24 15 0.20
25 19 0.25
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGCAGAATGGCCAA
Found at i:64488285 original size:46 final size:46
Alignment explanation
Indices: 64488229--64488411 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
64488219 GGAAGTGTAT
* *
64488229 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATAG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
* * *
64488275 ATATGAGGTAAAGCCGAATGGCTAATGCGAAAAGTGTATGAGGTGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
* *
64488321 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGGGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
* * * **
64488367 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATG
64488412 TGTATATATA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 122 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:64493554 original size:6 final size:6
Alignment explanation
Indices: 64493536--64493641 Score: 110
Period size: 6 Copynumber: 17.3 Consensus size: 6
64493526 AAGAAACATT
64493536 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
64493584 ATTAG- GTGACAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
64493634 ATCAGA AT
1 ATCAGA AT
64493642 GGGAATGCAA
Statistics
Matches: 84, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
5 4 0.05
6 72 0.86
7 6 0.07
8 2 0.02
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:64493600 original size:31 final size:31
Alignment explanation
Indices: 64493536--64493641 Score: 137
Period size: 31 Copynumber: 3.5 Consensus size: 31
64493526 AAGAAACATT
64493536 ATCAGAA-CTAGAATCAGAATCA-G-AATCAGA
1 ATCAGAATC-AGAATCAGAATCAGGTAA-CAGA
* *
64493566 ATCAGAATCAGAATCAGAATTAGGTGACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
*
64493597 ATCAGAATCAGAATCAGTATCAGGTAACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
*
64493628 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
64493642 GGGAATGCAA
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
30 19 0.28
31 47 0.70
32 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGAATCAGGTAACAGA
Found at i:64494814 original size:27 final size:26
Alignment explanation
Indices: 64494784--64494844 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
64494774 TTAGTTTACC
* *
64494784 AAATTACAGAAATGCCCTCGACTTGTA
1 AAATTACA-AAATACCCTCGACTTATA
* *
64494811 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTA-CAAAATACCCTCGACTTATA
64494838 AAATTAC
1 AAATTAC
64494845 TATTTTACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.03
27 26 0.90
28 2 0.07
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (26 bp):
AAATTACAAAATACCCTCGACTTATA
Found at i:64494853 original size:27 final size:27
Alignment explanation
Indices: 64494823--64494914 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
64494813 ATTACCAAAG
* *
64494823 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
** *
64494850 TACCCTTAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
64494877 TACCCTTGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
64494904 TACCCTCGATT
1 TACCCTCGATT
64494915 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:64494987 original size:54 final size:54
Alignment explanation
Indices: 64494913--64495096 Score: 185
Period size: 54 Copynumber: 3.4 Consensus size: 54
64494903 TTACCCTCGA
* ** *
64494913 TTGTGAAATTACTGAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCT-AGT
1 TTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCCTGA-T
* *
64494967 TTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCCTGAT
* ** ** ** *
64495021 TTGTGAAATTACTGAAATA-CCCTCAACCTGTAAAATTATTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-AATTTGTAAAATTATCAAAATACCCCT-GAT
*
64495075 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC
64495097 TTGATTTACA
Statistics
Matches: 106, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
53 8 0.08
54 95 0.90
55 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCCTGAT
Found at i:64495097 original size:27 final size:26
Alignment explanation
Indices: 64494913--64495096 Score: 143
Period size: 27 Copynumber: 6.8 Consensus size: 26
64494903 TTACCCTCGA
* ** *
64494913 TTGTGAAATTACTGAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCC-AAT
* *
64494940 TTGTAAAATTATCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCC-AAT
64494967 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCC-AAT
* *
64494994 TTGTGAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCC-AAT
* ** *
64495021 TTGTGAAATTACTGAAATACCCTCAAC
1 TTGTAAAATTACCAAAATACCC-CAAT
* *** * *
64495048 CTGTAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCC-CAAT
*
64495075 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC
64495097 TTGATTTACA
Statistics
Matches: 135, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
27 134 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCCCAAT
Found at i:64495111 original size:27 final size:26
Alignment explanation
Indices: 64495079--64495153 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
64495069 CTCGACTTGT
64495079 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAA-TACCCTTGATTTAC
* * **
64495106 AGAATTATCATTTTACCCTTGATTTAC
1 AAAATTACCA-AATACCCTTGATTTAC
*
64495133 AAAATTACTGAAATACCCTTG
1 AAAATTAC-CAAATACCCTTG
64495154 TAGGGTAGAA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGATTTAC
Found at i:64495165 original size:27 final size:27
Alignment explanation
Indices: 64495135--64495357 Score: 284
Period size: 27 Copynumber: 8.3 Consensus size: 27
64495125 TGATTTACAA
* *
64495135 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64495162 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
64495189 AATTACCGAAATACTCCTTTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64495216 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64495243 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64495270 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
64495297 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
64495324 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
64495351 AATTACC
1 AATTACC
64495358 ATTTTGCCCC
Statistics
Matches: 173, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 173 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:64495791 original size:6 final size:6
Alignment explanation
Indices: 64495764--64495847 Score: 73
Period size: 6 Copynumber: 13.7 Consensus size: 6
64495754 ATTCCCATTT
* * *
64495764 TGATTT TGATTC TG-TTACC TGATAC TGATTC TGATTC TGATTC TG-TCACC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGAT--TC
* *
64495814 TGATTC TGATTC TAATTC TGATTC TAATTC TGAT
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGAT
64495848 AATGTTTCTT
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
5 3 0.05
6 52 0.83
7 6 0.10
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:64495805 original size:31 final size:31
Alignment explanation
Indices: 64495764--64495838 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
64495754 ATTCCCATTT
* *
64495764 TGATTTTGATTCTGTTACCTGATACTGATTC
1 TGATTCTGATTCTGTCACCTGATACTGATTC
*
64495795 TGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTCACCTGATACTGATTC
*
64495826 TAATTCTGATTCT
1 TGATTCTGATTCT
64495839 AATTCTGATA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
TGATTCTGATTCTGTCACCTGATACTGATTC
Found at i:64495856 original size:18 final size:17
Alignment explanation
Indices: 64495835--64495868 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
64495825 CTAATTCTGA
64495835 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
64495853 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
64495869 GGTTAAAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:64496784 original size:27 final size:27
Alignment explanation
Indices: 64496754--64496949 Score: 275
Period size: 27 Copynumber: 7.3 Consensus size: 27
64496744 GGGGCAAAAT
* * * *
64496754 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64496781 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64496808 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64496835 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64496862 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64496889 AGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64496916 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
64496943 GGTAATT
1 GGTAATT
64496950 TTGTAAACCA
Statistics
Matches: 149, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:64496854 original size:81 final size:81
Alignment explanation
Indices: 64496758--64496949 Score: 314
Period size: 81 Copynumber: 2.4 Consensus size: 81
64496748 CAAAATGGTA
* *
64496758 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
*
64496822 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCAGT
* *
64496838 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
64496903 ACAGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
* *
64496919 AATTCTACCCTACAGGGGTATTTCGGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATT
64496950 TTGTAAACCA
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 4 0.04
81 99 0.96
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
ACAGGGGTATTTCAGT
Found at i:64496964 original size:27 final size:27
Alignment explanation
Indices: 64496934--64497274 Score: 202
Period size: 27 Copynumber: 12.6 Consensus size: 27
64496924 TACCCTACAG
* * *
64496934 GGGTATTTCGGTAATTTTGTAAACCAA
1 GGGTATTTCGGTAATTTTATAAATCGA
* *
64496961 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCGA
*** * *
64496988 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTATTTCGGTAATTTTATAAATCGA
* *** * *
64497015 TGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCGA
*** *
64497042 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCGA
*** * * *
64497069 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCGA
* *
64497096 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCGGTAATTTTATAAATCGA
* * * **
64497123 GGATATTTCAGTAATTTTACAGGTCGA
1 GGGTATTTCGGTAATTTTATAAATCGA
* * *
64497150 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTCGGTAATTTTATAAATCGA
* * *
64497176 GAGGTATTTTGGTAATTTTACAAA-CTA
1 G-GGTATTTCGGTAATTTTATAAATCGA
* * * *
64497203 GGGGTATTTTGGTAATTTTACAAACCAA
1 -GGGTATTTCGGTAATTTTATAAATCGA
* * * *
64497231 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTCGGTAATTTTATAAATCGA
*
64497258 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
64497275 GGTAAACTAA
Statistics
Matches: 263, Mismatches: 45, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
26 6 0.02
27 254 0.97
28 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTATAAATCGA
Found at i:64496965 original size:54 final size:52
Alignment explanation
Indices: 64496755--64496976 Score: 225
Period size: 54 Copynumber: 4.1 Consensus size: 52
64496745 GGGCAAAATG
* * * * * *
64496755 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCT-ACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACCC-A-A-GGGTATTTCA
*
64496809 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACC--CAAGGGTATTTCA
**
64496862 GATAATTCTACCCTACAGGGGTATTTTAGTATTTCT-ACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACCC-A-A-GGGTATTTCA
* *
64496917 GTAATTCTACCCTACAGGGGTATTTCGGTAATTTTGTAAACCAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGT-A-TTTCTAACCCAAGGGTATTTCA
64496971 GTAATT
1 GTAATT
64496977 TTGTAAATCG
Statistics
Matches: 143, Mismatches: 14, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
51 1 0.01
52 1 0.01
53 4 0.03
54 121 0.85
55 6 0.04
56 6 0.04
57 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (52 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACCCAAGGGTATTTCA
Found at i:64496992 original size:54 final size:54
Alignment explanation
Indices: 64496934--64497274 Score: 229
Period size: 54 Copynumber: 6.3 Consensus size: 54
64496924 TACCCTACAG
* * *
64496934 GGGTATTTCGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
*** * * *** *
64496988 GGGTAAAACGGTAATTCTATAAATCAATGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
*** * * *** * *
64497042 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
* * * * * **
64497096 GGGTACTTT-GGTAATTTTACAAGTCGAGGATATTTCAGTAATTTTACAGGTCGA
1 GGGTA-TTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
* * * ** * *
64497150 GGGTATTTCAGTAATTTCACAAATC-AGAGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTCGGTAATTTTATAAATCAAG-GGTATTTCAGTAATTTTATAAATCGA
* * * ** * * *
64497203 GGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATAAACCAA
1 -GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
*
64497258 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
64497275 GGTAAACTAA
Statistics
Matches: 235, Mismatches: 46, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
53 7 0.03
54 224 0.95
55 4 0.02
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTATAAATCGA
Found at i:64501470 original size:24 final size:26
Alignment explanation
Indices: 64501443--64501491 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
64501433 AGTTCATGCA
64501443 ATATTAAAGC-ATTTAA-ATACAATT
1 ATATTAAAGCTATTTAACATACAATT
64501467 ATATTAAAGCTTATTTAACATACAA
1 ATATTAAAGC-TATTTAACATACAA
64501492 ACTTACCTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (26 bp):
ATATTAAAGCTATTTAACATACAATT
Found at i:64506399 original size:43 final size:42
Alignment explanation
Indices: 64506243--64506400 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
64506233 ATGTGATTTT
* * *
64506243 GTGTAAGACCACATCTGGGACGTTGGCGTCGACTTATGTTTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTATG-ATTAC
* * * *
64506287 GTGTAAGACCATGTCTGGGAC-TTCAGCATCG-TATCTGATTTC
1 GTGTAAGACCACGTCTGGGACGTT-GGCATCGAT-TATGATTAC
* *
64506329 GTGTAAGACC-CTGTCTGGGACAG-TGGCAACGATGTTTGATTAC
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TATGATTAC
*
64506372 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
64506401 TGTATATGTT
Statistics
Matches: 91, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
42 29 0.32
43 37 0.41
44 25 0.27
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATTATGATTAC
Found at i:64507591 original size:27 final size:26
Alignment explanation
Indices: 64507543--64507601 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
64507533 GCGAAGCTGC
*
64507543 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
64507570 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
64507596 CAGATA
1 CAGATA
64507602 CATATATATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:64509939 original size:46 final size:46
Alignment explanation
Indices: 64509889--64510064 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
64509879 TGGTTGAGCA
64509889 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64509935 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
64509980 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64510028 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64510065 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64510045 original size:93 final size:93
Alignment explanation
Indices: 64509886--64510057 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
64509876 GGATGGTTGA
* *
64509886 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64509951 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
64509979 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64510044 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64510058 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64513916 original size:21 final size:21
Alignment explanation
Indices: 64513887--64513933 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
64513877 CAATGGAAGG
* * *
64513887 AAAAGGGAAATGGAATTTAGA
1 AAAATGGAAATCGAATGTAGA
64513908 AAAATGGAAATCGAATGTAGA
1 AAAATGGAAATCGAATGTAGA
64513929 AAAAT
1 AAAAT
64513934 ACTAATAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.55, C:0.02, G:0.23, T:0.19
Consensus pattern (21 bp):
AAAATGGAAATCGAATGTAGA
Found at i:64523936 original size:94 final size:91
Alignment explanation
Indices: 64523690--64523960 Score: 284
Period size: 94 Copynumber: 2.9 Consensus size: 91
64523680 TCATGGGTAA
* *
64523690 AATGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCTATCATCTTCGAGGCTGATGCCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCAT-GT-GAGGCTGATG-CATGT
*
64523755 CCTAGACATGGTCTTACACT-GACACATCTC
62 CCCAGACAT-GTCTTACACTAGACACATCTC
* * * * * *
64523785 -GTGGCTGAT-ACATGTCCCAGACAT-GTCTTATATTGGCTT-ATGTCCTGAGGCTAATGCATGT
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATG---TGAGGCTGATGCATGT
*
64523846 CCCAGACATGTCTTACACTAGA-ACTTGTCTC
62 CCCAGACATGTCTTACACTAGACAC--ATCTC
*
64523877 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAGTGTGGCTGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCAT-GTGAGGCTGATGCATGTCC
64523942 CAGACATGTCTTACACTAG
64 CAGACATGTCTTACACTAG
64523961 CTCACACAAA
Statistics
Matches: 146, Mismatches: 17, Indels: 27
0.77 0.09 0.14
Matches are distributed among these distances:
90 12 0.08
91 17 0.12
92 19 0.13
93 27 0.18
94 62 0.42
95 6 0.04
96 2 0.01
97 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (91 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATGTGAGGCTGATGCATGTCCCA
GACATGTCTTACACTAGACACATCTC
Found at i:64530524 original size:30 final size:31
Alignment explanation
Indices: 64530444--64530526 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
64530434 TCAGTCTCGA
*
64530444 CATAT-ACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
64530474 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
64530505 CATATCACT-GGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
64530527 ACTGTAAGCG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 17 0.34
31 33 0.66
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:64530760 original size:24 final size:24
Alignment explanation
Indices: 64530733--64530816 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 24
64530723 CTAGAGGCCT
*
64530733 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTAGGGCAA
*
64530757 AGCCCTTTTTGATAAACTAGGGCAA
1 AGCCC-TTTTAATAAACTAGGGCAA
**
64530782 AGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTT-AATAAACTAGGGCA-A
64530808 A-CCCTTTTA
1 AGCCCTTTTA
64530817 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
23 1 0.02
24 14 0.27
25 35 0.67
26 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTAGGGCAA
Found at i:64530780 original size:25 final size:25
Alignment explanation
Indices: 64530746--64530815 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
64530736 CTCTTTTAAT
* *
64530746 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
64530771 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
64530796 AACTAGGGCATAA-CCCTTTT
1 AACTAGGGCA-AAGCCCTTTT
64530816 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:64531296 original size:20 final size:20
Alignment explanation
Indices: 64531271--64531319 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
64531261 TGGGCCTGAA
*
64531271 AGCCCATTGGGCTCGACTCT
1 AGCCCATTGGGCTCGACTCC
*
64531291 AGCCCATTGGGCTCGATTCC
1 AGCCCATTGGGCTCGACTCC
64531311 AGCCCATTG
1 AGCCCATTG
64531320 AGGCCCAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.16, C:0.35, G:0.24, T:0.24
Consensus pattern (20 bp):
AGCCCATTGGGCTCGACTCC
Found at i:64531881 original size:54 final size:54
Alignment explanation
Indices: 64531715--64531898 Score: 174
Period size: 54 Copynumber: 3.4 Consensus size: 54
64531705 CATCCTACAA
* * * ** * ** *
64531715 GGGTGTTTTGGTAA-ATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTC-ACAAACCAGGGGTATTTTGGTAATTCTACAAACTAG
* * *
64531769 GGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAT
1 GGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTCTACAAACTAG
* * **
64531823 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTCTA-CAAACTAG
**
64531877 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTCACAA
64531899 TCGAGGGTAA
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
54 103 0.95
55 5 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTCTACAAACTAG
Found at i:64531884 original size:27 final size:27
Alignment explanation
Indices: 64531715--64531865 Score: 176
Period size: 27 Copynumber: 5.6 Consensus size: 27
64531705 CATCCTACAA
* * * * *
64531715 GGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
** ** *
64531742 GGGTATTTCAGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
64531769 GGGTATTTTGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
64531796 TGGTATTTTGGTAATTTTACAAACTAT
1 GGGTATTTTGGTAATTTTACAAACTAG
64531823 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
64531850 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
64531866 CTATCCTACA
Statistics
Matches: 101, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:64531891 original size:81 final size:81
Alignment explanation
Indices: 64531685--64531898 Score: 225
Period size: 81 Copynumber: 2.6 Consensus size: 81
64531675 TTTTACCTAT
* * * * * *
64531685 TAGGGGTATTTTAGTCATTTCATCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTT
1 TAGGGGTATTTTGGTAATTTCATCCTACAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
** *
64531750 CAGTAATTTTGTAAAT
66 CAGTAATTTTACAAAC
** * * *
64531766 TAGGGGTATTTTGGTAATTTCA-CAAACCAGTGGTATTTTGGTAATTTTACAAACTATGGGTATT
1 TAGGGGTATTTTGGTAATTTCATCCTA-CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATT
**
64531830 TTGGTAATTTTACAAAC
65 TCAGTAATTTTACAAAC
** *
64531847 TAGGGGTATTTTGGTAA-TTCTATCCTACAGGGGTATTTCAGTAATTTCACAA
1 TAGGGGTATTTTGGTAATTTC-ATCCTACAGGGGTATTTTGGTAATTTTACAA
64531899 TCGAGGGTAA
Statistics
Matches: 108, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
80 5 0.05
81 101 0.94
82 2 0.02
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTCATCCTACAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
CAGTAATTTTACAAAC
Found at i:64531931 original size:27 final size:27
Alignment explanation
Indices: 64531897--64532042 Score: 206
Period size: 27 Copynumber: 5.4 Consensus size: 27
64531887 GTAATTTCAC
*
64531897 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
64531924 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* *
64531951 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
64531978 AA-CTAAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
64532005 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
64532032 AATCGGGGGTA
1 AATCGAGGGTA
64532043 CTTTGATAAT
Statistics
Matches: 105, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 2 0.02
27 101 0.96
28 2 0.02
ACGTcount: A:0.38, C:0.06, G:0.26, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:64532042 original size:54 final size:54
Alignment explanation
Indices: 64531897--64532033 Score: 238
Period size: 54 Copynumber: 2.5 Consensus size: 54
64531887 GTAATTTCAC
*
64531897 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
* *
64531951 AATCGAGGGTAAAACGATAATTTTGTAAACTAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
*
64532005 AATCGAGGGTAAAATGGTAATTTTGTAAA
1 AATCGAGGGTAAAACGGTAATTTTGTAAA
64532034 TCGGGGGTAC
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
Found at i:64532052 original size:27 final size:26
Alignment explanation
Indices: 64532003--64532195 Score: 129
Period size: 27 Copynumber: 7.2 Consensus size: 26
64531993 GGTAATTCTG
** * *
64532003 TAAATCGAGGGTAAAATGGTAATTTTG
1 TAAATCGAGGGT-ATTTGATAATTTTA
*
64532030 TAAATCGGGGGTACTTTGATAATTTTA
1 TAAATCGAGGGTA-TTTGATAATTTTA
* * *
64532057 CAAGTCGAGGGTATTTCAATAATTTTA
1 TAAATCGAGGGTATTT-GATAATTTTA
* * *
64532084 -CAATCGACGGTATTTTAGTAATTTTA
1 TAAATCGAGGGTATTTGA-TAATTTTA
*
64532110 TAAATC-AGGGGTACTTTGGTAATTTTA
1 TAAATCGA-GGGTA-TTTGATAATTTTA
* * * *
64532137 CAAGTCGAAGGTATTTTAATAATTTTA
1 TAAATCGAGGGTA-TTTGATAATTTTA
* *
64532164 CAAATCGAGGGTATTTCAGTAATTTTA
1 TAAATCGAGGGTATTTGA-TAATTTTA
64532191 GTAAA
1 -TAAA
64532196 CTAAAGTATT
Statistics
Matches: 130, Mismatches: 27, Indels: 17
0.75 0.16 0.10
Matches are distributed among these distances:
25 1 0.01
26 29 0.22
27 93 0.72
28 7 0.05
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (26 bp):
TAAATCGAGGGTATTTGATAATTTTA
Found at i:64532065 original size:54 final size:53
Alignment explanation
Indices: 64531887--64532069 Score: 210
Period size: 54 Copynumber: 3.4 Consensus size: 53
64531877 GGGTATTTCA
*
64531887 GTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
* *
64531940 GTAATTTTGTA-AATCGAGGGTAAAACGATAATTTTGTAAACTAAGGGTAAAATG
1 GTAA-TTT-TACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
* * ***
64531994 GTAATTCTGTA-AATCGAGGGTAAAATGGTAATTTTGTAAA-TCGGGGGTACTTTG
1 GTAATT-T-TACAATCGAGGGTAAAACGGTAATTTTGTAAACT-GAGGGTAAAATG
*
64532048 ATAATTTTACAAGTCGAGGGTA
1 GTAATTTTACAA-TCGAGGGTA
64532070 TTTCAATAAT
Statistics
Matches: 113, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
52 2 0.02
53 10 0.09
54 100 0.88
55 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.32
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
Found at i:64532068 original size:81 final size:80
Alignment explanation
Indices: 64531888--64532149 Score: 221
Period size: 81 Copynumber: 3.3 Consensus size: 80
64531878 GGTATTTCAG
* *
64531888 TAATTTCACAA-TCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 TAATTTTACAAGTCGAGGGTAAAATGGTAA-TTTGTAAATC-GAGGGTAAAATGGTAATTTTGTA
* ****
64531951 AATCGAGGGTAAAACGA
64 AATCGGGGGTACTTTGA
* *
64531968 TAATTTTGTA-AACT-AAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGT
1 TAA-TTT-TACAAGTCGAGGGTAAAATGGTAATT-TGTAAATCGAGGGTAAAATGGTAATTTTGT
64532031 AAATCGGGGGTACTTTGA
63 AAATCGGGGGTACTTTGA
** ** * *** * *
64532049 TAATTTTACAAGTCGAGGGT-ATTTCAATAATTT-TACAATCGACGGTATTTTAGTAATTTTATA
1 TAATTTTACAAGTCGAGGGTAAAAT-GGTAATTTGTA-AATCGAGGGTAAAATGGTAATTTTGTA
* *
64532112 AATCAGGGGTACTTTGG
64 AATCGGGGGTACTTTGA
*
64532129 TAATTTTACAAGTCGAAGGTA
1 TAATTTTACAAGTCGAGGGTA
64532150 TTTTAATAAT
Statistics
Matches: 149, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
79 4 0.03
80 69 0.46
81 73 0.49
82 3 0.02
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.34
Consensus pattern (80 bp):
TAATTTTACAAGTCGAGGGTAAAATGGTAATTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAA
TCGGGGGTACTTTGA
Found at i:64532080 original size:54 final size:53
Alignment explanation
Indices: 64532021--64532195 Score: 151
Period size: 54 Copynumber: 3.2 Consensus size: 53
64532011 GGGTAAAATG
** * *
64532021 GTAATTTTGTAAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTGTAAATCGAAGGTA-TTTAATAATTTTACAAATCGAGGGTATTTCA
* * * * *
64532075 ATAA-TTT-TACAATCGACGGTATTTTAGTAATTTTATAAATC-AGGGGTACTTT-G
1 GTAATTTTGTA-AATCGAAGGTA-TTTAATAATTTTACAAATCGA-GGGTA-TTTCA
** *
64532128 GTAATTTTACAAGTCGAAGGTATTTTAATAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTGTAAATCGAAGGTA-TTTAATAATTTTACAAATCGAGGGTATTTCA
64532182 GTAATTTTAGTAAA
1 GTAATTTT-GTAAA
64532196 CTAAAGTATT
Statistics
Matches: 94, Mismatches: 19, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
52 3 0.03
53 38 0.40
54 49 0.52
55 4 0.04
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (53 bp):
GTAATTTTGTAAATCGAAGGTATTTAATAATTTTACAAATCGAGGGTATTTCA
Found at i:64532121 original size:80 final size:81
Alignment explanation
Indices: 64532021--64532195 Score: 271
Period size: 80 Copynumber: 2.2 Consensus size: 81
64532011 GGGTAAAATG
* * *
64532021 GTAATTTTGTAAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAATAATTTTAC-
1 GTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCGAAGGTATTTCAATAATTTTACA
*
64532085 AATCGACGGTATTTTA
66 AATCGACGGTATTTCA
* *
64532101 GTAATTTTATAAATCAGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTTAATAATTTTACA
1 GTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCGAAGGTATTTCAATAATTTTACA
*
64532166 AATCGAGGGTATTTCA
66 AATCGACGGTATTTCA
64532182 GTAATTTTAGTAAA
1 GTAATTTTA-TAAA
64532196 CTAAAGTATT
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 59 0.69
81 23 0.27
82 4 0.05
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
GTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCGAAGGTATTTCAATAATTTTACA
AATCGACGGTATTTCA
Found at i:64532205 original size:54 final size:53
Alignment explanation
Indices: 64532039--64532190 Score: 191
Period size: 54 Copynumber: 2.8 Consensus size: 53
64532029 GTAAATCGGG
* * * * *
64532039 GGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAATCGAC
1 GGTATTTTAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAA
* * *
64532092 GGTATTTTAGTAATTTTATAAATC-AGGGGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTATTTTAATAATTTTACAAATCGA-GGGTA-TTTCAGTAATTTTACAA-TCGAA
64532146 GGTATTTTAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
1 GGTATTTTAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
64532191 GTAAACTAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
52 1 0.01
53 38 0.46
54 43 0.52
55 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (53 bp):
GGTATTTTAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAA
Found at i:64534409 original size:49 final size:46
Alignment explanation
Indices: 64534347--64534661 Score: 216
Period size: 49 Copynumber: 6.7 Consensus size: 46
64534337 TGGGTAAAAT
*
64534347 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTCGAG
1 GCTGATG-CATGTCCCAGACATGGTCTTACACTGGCT-TCATC-TCGAG
* * *
64534396 GCTGATGCTATGTCCTAGACATGGTCTTACACT-GCTCTCA-CATAGCCG
1 GCTGATGC-ATGTCCCAGACATGGTCTTACACTGGCT-TCATC-TCG-AG
* * *
64534444 TG-TCGATGTCATGTCCTAGACATGGTCTTACACTGGC-ACATCTCGTG
1 -GCT-GATG-CATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGAG
* * * * *
64534491 GCTGATACATGTCCCAGACAT-GTTTTATACTGGCTTACGTCCCGAG
1 GCTGATGCATGTCCCAGACATGGTCTTACACTGGCTT-CATCTCGAG
* * * * * *
64534537 GTTGATGCATGTCCCAAACAT-GTCTTACACTAGCACTT-GTCTCAAT
1 GCTGATGCATGTCCCAGACATGGTCTTACACT-G-GCTTCATCTCGAG
* * * *
64534583 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCTGATG-CATGTCCCAGACATGGTCTTACACTGGCT-TCAT-CTCGAG
*
64534631 GCCGATGCATGTCCCAGACAT-GTCTTACACT
1 GCTGATGCATGTCCCAGACATGGTCTTACACT
64534662 AGCTCACACA
Statistics
Matches: 212, Mismatches: 37, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
44 11 0.05
45 13 0.06
46 57 0.27
47 35 0.17
48 32 0.15
49 61 0.29
50 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGAG
Found at i:64541116 original size:22 final size:23
Alignment explanation
Indices: 64541076--64541121 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
64541066 GACCCAACTA
64541076 ATGTGGCCCACACGACCT-ACAC
1 ATGTGGCCCACACGACCTAACAC
* * *
64541098 ATGTGGTCCACATGGCCTAACAC
1 ATGTGGCCCACACGACCTAACAC
64541121 A
1 A
64541122 CGACCTACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.28, C:0.35, G:0.20, T:0.17
Consensus pattern (23 bp):
ATGTGGCCCACACGACCTAACAC
Found at i:64541766 original size:12 final size:13
Alignment explanation
Indices: 64541744--64541782 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
64541734 GAAGAGGAAG
*
64541744 GAAAAAGAAAATA
1 GAAAAAGAAAAAA
64541757 GAAAAA-AAAAAA
1 GAAAAAGAAAAAA
64541769 GAAAGAAGAAAAAA
1 GAAA-AAGAAAAAA
64541783 CTAACGTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 9 0.39
13 8 0.35
14 6 0.26
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:64541769 original size:19 final size:19
Alignment explanation
Indices: 64541745--64541782 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
64541735 AAGAGGAAGG
64541745 AAAAAGAAA-ATAGAAAAAA
1 AAAAAGAAAGA-AGAAAAAA
64541764 AAAAAGAAAGAAGAAAAAA
1 AAAAAGAAAGAAGAAAAAA
64541783 CTAACGTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (19 bp):
AAAAAGAAAGAAGAAAAAA
Found at i:64541986 original size:80 final size:80
Alignment explanation
Indices: 64541901--64542058 Score: 307
Period size: 80 Copynumber: 2.0 Consensus size: 80
64541891 TTATCAGATT
*
64541901 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATGGGTGGCATTAACTAGAAATAATAAAAA
1 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
64541966 TAATTTCATTGTGTG
66 TAATTTCATTGTGTG
64541981 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
1 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
64542046 TAATTTCATTGTG
66 TAATTTCATTGTG
64542059 CACACACTGG
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (80 bp):
TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
TAATTTCATTGTGTG
Found at i:64544178 original size:3 final size:3
Alignment explanation
Indices: 64544165--64544231 Score: 125
Period size: 3 Copynumber: 22.3 Consensus size: 3
64544155 TTCTTTACTC
*
64544165 TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
64544213 TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT T
64544232 TTTTGTGCAT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:64544653 original size:50 final size:50
Alignment explanation
Indices: 64544595--64544709 Score: 205
Period size: 50 Copynumber: 2.3 Consensus size: 50
64544585 TCAGTATGTA
64544595 TACAGAGAAGGGAATACGGTAGCGAATTATATGGCAGCACCAGCCAGAGG
1 TACAGAGAAGGGAATACGGTAGCGAATTATATGGCAGCACCAGCCAGAGG
64544645 TACAGAGAAGGGAATACGGTAGCGAATTATATGGCAGCACCAGCCAGAGG
1 TACAGAGAAGGGAATACGGTAGCGAATTATATGGCAGCACCAGCCAGAGG
*
64544695 TA-AGGGAAAGGGAAT
1 TACAGAG-AAGGGAAT
64544710 GCAACTGCAC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
49 3 0.05
50 60 0.95
ACGTcount: A:0.37, C:0.16, G:0.33, T:0.14
Consensus pattern (50 bp):
TACAGAGAAGGGAATACGGTAGCGAATTATATGGCAGCACCAGCCAGAGG
Found at i:64553670 original size:14 final size:15
Alignment explanation
Indices: 64553651--64553680 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
64553641 AATCTAAAAA
64553651 TTAAAAAAT-ATTTT
1 TTAAAAAATCATTTT
64553665 TTAAAAAATCATTTT
1 TTAAAAAATCATTTT
64553680 T
1 T
64553681 AGTCCTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAAAAAATCATTTT
Found at i:64555629 original size:28 final size:29
Alignment explanation
Indices: 64555600--64555656 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
64555590 TATACTTTTT
64555600 AAAGGACTAAATCAAAATTTTATCATTTA
1 AAAGGACTAAATCAAAATTTTATCATTTA
** *
64555629 AAATTATTAAATCAAAATTTTATCATTT
1 AAAGGACTAAATCAAAATTTTATCATTT
64555657 TTGAAGAGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (29 bp):
AAAGGACTAAATCAAAATTTTATCATTTA
Found at i:64556099 original size:94 final size:94
Alignment explanation
Indices: 64555938--64556109 Score: 326
Period size: 94 Copynumber: 1.8 Consensus size: 94
64555928 TATAAAAAAT
*
64555938 TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAGCGAGAAAGAAGATTTTGAGGTA
1 TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
64556003 TTGGATTCAAATCACATAATGTGCATGTA
66 TTGGATTCAAATCACATAATGTGCATGTA
*
64556032 TTTGATATGAAAATCAAATATAACTTTGATTTAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
1 TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
64556097 TTGGATTCAAATC
66 TTGGATTCAAATC
64556110 CTATTAATCA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 76 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.34
Consensus pattern (94 bp):
TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
TTGGATTCAAATCACATAATGTGCATGTA
Found at i:64565828 original size:153 final size:153
Alignment explanation
Indices: 64565616--64568642 Score: 3797
Period size: 153 Copynumber: 19.8 Consensus size: 153
64565606 AAGATAAATT
* * *
64565616 TTTGAGAACTTATAGCTTAACCCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTAGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * * * * * *
64565681 TTCCCTAAATCTTAATTTATTACC-ATTTTATTAAAAAAAATAAACCATCGCCAATAAAATCAAG
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATT-AAAAATATAAACCATCACCAACAAAATCAAG
* *
64565745 ATTAATGTGCTGCTACTATGTGTC
130 ATTAATGTGCTGCTAATATGCGTC
* * ** * *
64565769 TTTGAGAACTTATAGCTTAACTTGATCAACACATGCAACTAGCTAATAAATATAGCAATTGGGCT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * *
64565834 TCCCCTTAATCTTAAAGTATTACATCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
** * * *
64565899 TTAATGTAATACTAATATTCATC
131 TTAATGTGCTGCTAATATGCGTC
* * * * *
64565922 TTTGAGAATTTATAGCTTAACTCGATTGATTCATGCAACTAGCTAATAAATATTGCAATTGAACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
64565987 TCCCATTCATCTCAAATTATTTCCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
64566052 TTAACGTG-T-CATTAATATTCGTC
131 TTAATGTGCTGC--TAATATGCGTC
* * * * *
64566075 TTTGAGAACTTATAGCTTAAATCGATCGATTC-T-C-AGTTGCTTAATAAATAATA-CAATTGAA
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGC-TAATAAAT-ATAGCAGTTGGA
* * * *
64566136 CTTCCCCTTATTCTAAAATTATTACCTCTTTTATT-AAAATAAAAACCATCACCCACAAAATCAA
64 CTTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAA
*
64566200 GATTAATGTGCTTCTAATATGCGTC
129 GATTAATGTGCTGCTAATATGCGTC
* * *
64566225 TTTGAGAACTTATAGCTTAACTTGATTGATTCATGCAACTAACTAATAAATATAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
64566290 T-CCCTTAATCTCAAATTATTACCACTTTTATTAAAAATGTAAACCATCACCAACAAAATTAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
64566354 TTAATGTGCTGCTCATATGTGTC
131 TTAATGTGCTGCTAATATGCGTC
* ** * * * *
64566377 TTTGAGAAATTATAGCTTAACTTAATTGATTCATGCAAATAGCTAATAAATATTGCAATT-GATC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGA-C
* * * *
64566441 TTTCCCTTAATCTCAAATTATTTCCTCTTTTATTAAAAATATAAACTATC-GCAGACAAAATCAA
65 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCA-ACAAAATCAA
* *
64566505 GATTAACGTG-T-CATTAATATTCGTC
129 GATTAATGTGCTGC--TAATATGCGTC
* * * * *
64566530 TTTGAGAACTTATAGCTTAAATCGATCGATTC-T-C-AGTTGCTTAATAAATAATA-CAATTGAA
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGC-TAATAAAT-ATAGCAGTTGGA
* * * *
64566591 CTTCCCCTTATTCTAAAATTATTACCTCTTTTATT-AAAATAAAAACCATCACCCACAAAATCAA
64 CTTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAA
*
64566655 GATTAATGTGCTTCTAATATGCGTC
129 GATTAATGTGCTGCTAATATGCGTC
* * *
64566680 TTTGAGAACTTATAGCTTAACTTGATTGATTCATGCAACTAACTAATAAATATAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
64566745 T-CCCTTAATCTCAAATTATTACCACTTTTATTAAAAATGTAAACCATCACCAACAAAATTAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
64566809 TTAATGTGCTGCTCATATGTGTC
131 TTAATGTGCTGCTAATATGCGTC
* ** * * * *
64566832 TTTGAGAAATTATAGCTTAACTTAATTGATTCATGCAAATAGCTAATAAATATTGCAATT-GATC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGA-C
* * * *
64566896 TTTCCCTTAATCTCAAATTATTTCCTCTTTTATTAAAAATATAAACTATC-GCAGACAAAATCAA
65 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCA-ACAAAATCAA
* * * *
64566960 GATTAATGTGCTTCTAACATGTGTT
129 GATTAATGTGCTGCTAATATGCGTC
* * * * **
64566985 TTTTAGAACTTATAGCTTAACTTGATCGATTCATGCAACAAGGTAATAAATATAATAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* ***
64567050 TCCCCTTAATCTCAAATTATCACCTCTTTTATTAAAAATATAAACCATCATTGACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
64567115 TTAATGTGCTGCTAATATGCGTC
131 TTAATGTGCTGCTAATATGCGTC
* * *
64567138 TTTGAGAACTTATAGCTTAATTCGATCGATACATGCAACTAGCTAATAAATATAGTAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* *
64567203 TCCCCTTAATCTCAAAGTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* * * *
64567268 TTAATGTACTACTAATATACATC
131 TTAATGTGCTGCTAATATGCGTC
* * * * *
64567291 TTTAAGAACTTATAGCTTAACTCGATCGATTCGTACAACTTGCTAATAAACATAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
64567356 TCCCCTTAATATCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGA-CGACAAAATCAAT
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATC-ACCAACAAAATCAAG
* * *
64567420 ATTAATGTGCTGTTAATATACATC
130 ATTAATGTGCTGCTAATATGCGTC
* *
64567444 TTTGAGAACTTATAGCTTAACTCGGTCGATTCATGCAACTAGCTAATAAATATAACAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * * *
64567509 TCCGCTTAATCTCAAATTATTACCTTTTTTATTAAAAGTATAAACTATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* * * *
64567574 TTAATATACTACTAATATGCATC
131 TTAATGTGCTGCTAATATGCGTC
* * *
64567597 TTTGAGAAAC-TATAGCTTAACTCGATCAATTCATGCATCTAGCTAATAAATATAGCTGTTGGAC
1 TTTGAG-AACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGAC
* * *
64567661 TTCCCCTTGATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCAACGACAAAAATCAA
65 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAAC-AAAATCAA
* * *
64567726 GATTAATGTGCTGTTAATATGCATA
129 GATTAATGTGCTGCTAATATGCGTC
* *
64567751 TTTGAGAACTTATAGCTTAACTCGATCGATTGATGCAACTAGCTAATAAATATAACAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
64567816 TCCCCTTAATCTCTAATTATTACCTCTTTTATTAAAAATATAAACCATCGA-CGAGAAAATC-AG
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATC-ACCAACAAAATCAAG
*
64567879 TATTAATGTGCTGCTAATATGCGTA
130 -ATTAATGTGCTGCTAATATGCGTC
** * * * *
64567904 TTTTTGAACTTATAGCTTAACTCAATCAATTCATGCAACTAGCTAATAAATATAACAATTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
*
64567969 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATTGA-CAACAAAAATCAA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCA-TCACCAAC-AAAATCAA
*
64568033 GATTAATGTGCTGCTAATATGCATC
129 GATTAATGTGCTGCTAATATGCGTC
* * *
64568058 TTTGAGAACTTATAGCTTAACTCGATCAATTCATGCAACTAGCTAAAAAATATAGCAGTTGAACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
64568123 TCCCCTTAATCTCAAATTATTACCT-TTCTTATTAAAAAAAATAAACCATCGCCGACAAAATCAA
66 TCCCCTTAATCTCAAATTATTACCTCTT-TTATT-AAAAATATAAACCATCACCAACAAAATCAA
* ** *
64568187 GATTAAGGTATTGCTAATATGTGTC
129 GATTAATGTGCTGCTAATATGCGTC
* * * * * *
64568212 TTTGAGAACCTATAGCTTAACTCGACCAATACATGTAGCTAGCTAATAAATATAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * * *
64568277 TCCCTTTACTCTCAAAGTATTACCTATTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
64568342 TTAATGTACTACTAATATGCGTC
131 TTAATGTGCTGCTAATATGCGTC
* * *
64568365 TTTGAAAACTTATAGCTTAACTCGATTGATTCATGCAACTAGCTAATAAATATAGTAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* *
64568430 TCCCTTTAATCTCAACTTATTACCTCTTTTATTAAAAATATAAACCATCACCCAA-AAAATCAAG
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCA-CCAACAAAATCAAG
* *
64568494 ATTAATGTGTTGCTAATATGCATC
130 ATTAATGTGCTGCTAATATGCGTC
* * * * *
64568518 TTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAATTAGATAAAAAATATAGTAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * **
64568583 TCCCCTTAATCTCAAAGTATTAACTCTTTTATTAAAAAAATAAACCATCACTGACAAAAT
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAAT
64568643 TGTAACAACC
Statistics
Matches: 2505, Mismatches: 320, Indels: 98
0.86 0.11 0.03
Matches are distributed among these distances:
150 154 0.06
151 165 0.07
152 264 0.11
153 1520 0.61
154 381 0.15
155 21 0.01
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (153 bp):
TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
TTAATGTGCTGCTAATATGCGTC
Found at i:64566574 original size:455 final size:457
Alignment explanation
Indices: 64565616--64568642 Score: 3815
Period size: 455 Copynumber: 6.6 Consensus size: 457
64565606 AAGATAAATT
* *
64565616 TTTGAGAACTTATAGCTTAACCCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTAGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATA-CAATTGGACT
* * * * * * * * *
64565681 TTCCCTAAATCTTAATTTATTACC-ATTTTATTAAAAAAAATAAACCATCGCCAATAAAATCAAG
65 TCCCCTTAATCTCAAATTATTACCTCTTTTATT-AAAAATATAAACCATCACCCACAAAATCAAG
* * * **
64565745 ATTAATGTGCTGCTACTATGTGTCTTTGAGAACTTATAGCTTAACTTGATCAACACATGCAACTA
129 ATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACTA
* * * *
64565810 GCTAATAAATATAGCAATTGGGCTTCCCCTTAATCTTAAAGTATTA-CATCTTTTATTAAAAATA
194 GCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCA-CTTTTATTAAAAATA
* * * *
64565874 TAAACCATCACCCACAAAATCAAGATTAATGTAATACTAATAT-TCATCTTTGAGAATTTATAGC
258 TAAACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGT-ATCTTTGAGAACTTATAGC
* * * *
64565938 TTAACTCGATTGATTCATGCAACTAGCTAATAAATATTGCAATTGAAC-TTCCCATTCATCTCAA
322 TTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGACTTTCCC-TTAATCTCAA
* * *
64566002 ATTATTTCCTCTTTTATTAAAAATATAAACCATCACCA-ACAAAATCAAGATTAACGTGTCATTA
386 ATTATTACCTCTTTTATTAAAAATATAAACCATC-GCAGACAAAATCAAGATTAATGTG-CATTA
64566066 ATATTCGTC
449 ATATTCGTC
* * * *
64566075 TTTGAGAACTTATAGCTTAAATCGATCGATTC-T-C-AGTTGCTTAATAAATAATACAATTGAAC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGC-TAATAAAT-ATACAATTGGAC
* * *
64566137 TTCCCCTTATTCTAAAATTATTACCTCTTTTATT-AAAATAAAAACCATCACCCACAAAATCAAG
64 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAG
* *
64566201 ATTAATGTGCTTCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATTGATTCATGCAACTA
129 ATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACTA
* *
64566266 ACTAATAAATATAGCAGTTGGACTT-CCCTTAATCTCAAATTATTACCACTTTTATTAAAAATGT
194 GCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATAT
* * * * * *
64566330 AAACCATCACCAACAAAATTAAGATTAATGTGCTGCTCATATGTGTCTTTGAGAAATTATAGCTT
259 AAACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAGCTT
** * * *
64566395 AACTTAATTGATTCATGCAAATAGCTAATAAATATTGCAATT-GATCTTTCCCTTAATCTCAAAT
324 AACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGA-CTTTCCCTTAATCTCAAAT
* * *
64566459 TATTTCCTCTTTTATTAAAAATATAAACTATCGCAGACAAAATCAAGATTAACGTGTCATTAATA
388 TATTACCTCTTTTATTAAAAATATAAACCATCGCAGACAAAATCAAGATTAATGTG-CATTAATA
64566524 TTCGTC
452 TTCGTC
* * * *
64566530 TTTGAGAACTTATAGCTTAAATCGATCGATTC-T-C-AGTTGCTTAATAAATAATACAATTGAAC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGC-TAATAAAT-ATACAATTGGAC
* * *
64566592 TTCCCCTTATTCTAAAATTATTACCTCTTTTATT-AAAATAAAAACCATCACCCACAAAATCAAG
64 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAG
* *
64566656 ATTAATGTGCTTCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATTGATTCATGCAACTA
129 ATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACTA
* *
64566721 ACTAATAAATATAGCAGTTGGACTT-CCCTTAATCTCAAATTATTACCACTTTTATTAAAAATGT
194 GCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATAT
* * * * * *
64566785 AAACCATCACCAACAAAATTAAGATTAATGTGCTGCTCATATGTGTCTTTGAGAAATTATAGCTT
259 AAACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAGCTT
** * * *
64566850 AACTTAATTGATTCATGCAAATAGCTAATAAATATTGCAATT-GATCTTTCCCTTAATCTCAAAT
324 AACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGA-CTTTCCCTTAATCTCAAAT
* * * *
64566914 TATTTCCTCTTTTATTAAAAATATAAACTATCGCAGACAAAATCAAGATTAATGTGCTTCTAACA
388 TATTACCTCTTTTATTAAAAATATAAACCATCGCAGACAAAATCAAGATTAATGTGCAT-TAATA
*
64566979 TGT-GTT
452 T-TCGTC
* * * *
64566985 TTTTAGAACTTATAGCTTAACTTGATCGATTCATGCAACAAGGTAATAAATATA-ATAGTTGGAC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATACA-A-TTGGAC
* ***
64567049 TTCCCCTTAATCTCAAATTATCACCTCTTTTATTAAAAATATAAACCATCATTGACAAAATCAAG
64 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAG
*
64567114 ATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAA-TTCGATCGATACATGCAACT
129 ATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTT-GATCGATTCATGCAACT
* * *
64567178 AGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAAGTATTACCTCTTTTATTAAAAATA
193 AGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATA
* * ** *
64567243 TAAACCATCACCCACAAAATCAAGATTAATGTACTACTAATATACATCTTTAAGAACTTATAGCT
258 TAAACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAGCT
* * * * * * *
64567308 TAACTCGATCGATTCGTACAACTTGCTAATAAACATAGCAGTTGGACTTCCCCTTAATATCAAAT
323 TAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGACTTTCCCTTAATCTCAAAT
* *
64567373 TATTACCTCTTTTATTAAAAATATAAACCATCG-ACGACAAAATCAATATTAATGTGCTGTTAAT
388 TATTACCTCTTTTATTAAAAATATAAACCATCGCA-GACAAAATCAAGATTAATGTGC-ATTAAT
* *
64567437 ATACATC
451 ATTCGTC
* *
64567444 TTTGAGAACTTATAGCTTAACTCGGTCGATTCATGCAACTAGCTAATAAATATAACAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATAT-ACAATTGGACT
* * * *
64567509 TCCGCTTAATCTCAAATTATTACCTTTTTTATTAAAAGTATAAACTATCACCCACAAAATCAAGA
65 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
* * * * * * *
64567574 TTAATATACTACTAATATGCATCTTTGAGAAAC-TATAGCTTAACTCGATCAATTCATGCATCTA
130 TTAATGTGCTGCTAATATGCGTCTTTGAG-AACTTATAGCTTAACTTGATCGATTCATGCAACTA
* * *
64567638 GCTAATAAATATAGCTGTTGGACTTCCCCTTGATCTCAAATTATTACCTCTTTTATTAAAAATAT
194 GCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATAT
* * * * *
64567703 AAACCATCAACGACAAAAATCAAGATTAATGTGCTGTTAATATGCATATTTGAGAACTTATAGCT
259 AAACCATCACCGAC-AAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAGCT
* * * * *
64567768 TAACTCGATCGATTGATGCAACTAGCTAATAAATATAACAGTTGGACTTCCCCTTAATCTCTAAT
323 TAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGACTTTCCCTTAATCTCAAAT
*
64567833 TATTACCTCTTTTATTAAAAATATAAACCATCG-ACGAGAAAATC-AGTATTAATGTGC-TGCTA
388 TATTACCTCTTTTATTAAAAATATAAACCATCGCA-GACAAAATCAAG-ATTAATGTGCAT--TA
* *
64567895 ATATGCGTA
449 ATATTCGTC
** * *
64567904 TTTTTGAACTTATAGCTTAACTCAATCAATTCATGCAACTAGCTAATAAATATAACAATTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATAT-ACAATTGGACT
* *
64567969 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATTGA-CAACAAAAATCAA
65 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCA-TCACCCAC-AAAATCAA
* * *
64568033 GATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAGCTTAACTCGATCAATTCATGCAACT
128 GATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACT
* * *
64568098 AGCTAAAAAATATAGCAGTTGAACTTCCCCTTAATCTCAAATTATTACC-TTTCTTATTAAAAAA
193 AGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTT-TTATT-AAAAA
* * * * * *
64568162 AATAAACCATCGCCGACAAAATCAAGATTAAGGTATTGCTAATATGTGTCTTTGAGAACCTATAG
256 TATAAACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAG
* * * * * * *
64568227 CTTAACTCGACCAATACATGTAGCTAGCTAATAAATATAGCAGTTGGAC-TTCCCTTTACTCTCA
321 CTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGACTTTCCC-TTAATCTCA
* * * ** * *
64568291 AAGTATTACCTATTTTATTAAAAATATAAACCATCACCCACAAAATCAAGATTAATGTACTACTA
385 AATTATTACCTCTTTTATTAAAAATATAAACCATCGCAGACAAAATCAAGATTAATGTGC-ATTA
*
64568356 ATATGCGTC
449 ATATTCGTC
* * * *
64568365 TTTGAAAACTTATAGCTTAACTCGATTGATTCATGCAACTAGCTAATAAATATAGTAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATA-CAATTGGACT
* * *
64568430 TCCCTTTAATCTCAACTTATTACCTCTTTTATTAAAAATATAAACCATCACCCAAAAAATCAAGA
65 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
* * *
64568495 TTAATGTGTTGCTAATATGCATCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAATTAG
130 TTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACTAG
* * * * * * *
64568560 ATAAAAAATATAGTAGTTGGACTTCCCCTTAATCTCAAAGTATTAACTCTTTTATTAAAAAAATA
195 CTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATATA
*
64568625 AACCATCACTGACAAAAT
260 AACCATCACCGACAAAAT
64568643 TGTAACAACC
Statistics
Matches: 2300, Mismatches: 225, Indels: 86
0.88 0.09 0.03
Matches are distributed among these distances:
454 5 0.00
455 681 0.30
456 123 0.05
457 83 0.04
458 123 0.05
459 489 0.21
460 405 0.18
461 370 0.16
462 21 0.01
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (457 bp):
TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATACAATTGGACTT
CCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGAT
TAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAACTAGC
TAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCACTTTTATTAAAAATATAA
ACCATCACCGACAAAATCAAGATTAATGTACTGCTAATATGTATCTTTGAGAACTTATAGCTTAA
CTCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTGGACTTTCCCTTAATCTCAAATTAT
TACCTCTTTTATTAAAAATATAAACCATCGCAGACAAAATCAAGATTAATGTGCATTAATATTCG
TC
Found at i:64568803 original size:12 final size:12
Alignment explanation
Indices: 64568786--64568815 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
64568776 TAATTTTAGC
64568786 AATTGCATGCTT
1 AATTGCATGCTT
64568798 AATTGCATGCTT
1 AATTGCATGCTT
64568810 AATTGC
1 AATTGC
64568816 GAAAAAGGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (12 bp):
AATTGCATGCTT
Found at i:64569935 original size:48 final size:48
Alignment explanation
Indices: 64569860--64570183 Score: 271
Period size: 48 Copynumber: 6.8 Consensus size: 48
64569850 TGATATGTGT
* * * *
64569860 GCTAGTGTAAGACCATGTT-TGGAACATGGCATTGGCATTGAGACGAGA
1 GCTAGTGTAAGACCAT-TTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * * *
64569908 GCTAGAGTAAGACCATTTCTGGGACATGGCATCAGCCTCGACATGTGG
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * * **
64569956 GCCAGTGTAAAACCATGTT-TGGAATATGGCATCGGCATTGAGACCAGA
1 GCTAGTGTAAGACCAT-TTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * ** *
64570004 GCTAGTGTAAAACCATGTCTGGGACATGGCATCAGCCTCAACATGTGA
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATGAGA
* * * * *
64570052 GCCAGTGTAAGACCATGTT-TGGAACATGGCATCAGCATTGAGAAGAGA
1 GCTAGTGTAAGACCAT-TTCTGGGACATGGCATCGGCATTGACATGAGA
* * *
64570100 GCTA-TGTAAGACTATGTCTGGGACATGGCATCGGCCTTGACATGTA-A
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATG-AGA
* *
64570147 GATAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCA
64570184 ATTTACCCTC
Statistics
Matches: 213, Mismatches: 56, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
46 1 0.00
47 38 0.18
48 171 0.80
49 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGACATGAGA
Found at i:64569996 original size:96 final size:96
Alignment explanation
Indices: 64569854--64570183 Score: 464
Period size: 96 Copynumber: 3.4 Consensus size: 96
64569844 TTTGGGTGAT
* * * *
64569854 ATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGAGACGAGAGCTAGAGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
*
64569919 ACCATTTCTGGGACATGGCATCAGCCTCGAC
66 ACCATGTCTGGGACATGGCATCAGCCTCGAC
* * * * *
64569950 ATGTGGGCCAGTGTAAAACCATGTTTGGAATATGGCATCGGCATTGAGACCAGAGCTAGTGTAAA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
*
64570015 ACCATGTCTGGGACATGGCATCAGCCTCAAC
66 ACCATGTCTGGGACATGGCATCAGCCTCGAC
* *
64570046 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGAGAAGAGAGCTA-TGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
* * *
64570110 ACTATGTCTGGGACATGGCATCGGCCTTGAC
66 ACCATGTCTGGGACATGGCATCAGCCTCGAC
* ** * *
64570141 ATGTAAGATAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
64570184 ATTTACCCTC
Statistics
Matches: 207, Mismatches: 27, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
95 69 0.33
96 138 0.67
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCAGCCTCGAC
Found at i:64572415 original size:30 final size:30
Alignment explanation
Indices: 64572379--64572438 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
64572369 AATGCTTATG
64572379 TTATTTTGTCATTGAATTGCCATGAATGCT
1 TTATTTTGTCATTGAATTGCCATGAATGCT
64572409 TTATTTTGTCATTGAATTGCCATGAATGCT
1 TTATTTTGTCATTGAATTGCCATGAATGCT
64572439 GAATGATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.47
Consensus pattern (30 bp):
TTATTTTGTCATTGAATTGCCATGAATGCT
Found at i:64572626 original size:43 final size:43
Alignment explanation
Indices: 64572549--64572671 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 43
64572539 ATTGGGATGT
* * * *
64572549 GATTACATGTAAGACCCTATATGGGACAGTGACATTG-TATTAC
1 GATTACGTGTAAGACCCTGTATGGGACAGTGACATCGTTAAT-C
*
64572592 GATTACGTGTAAGACCATGTATGGGACA-TCGACATCGTTAATC
1 GATTACGTGTAAGACCCTGTATGGGACAGT-GACATCGTTAATC
* * *
64572635 GAATT-CGTGTAAGACCCTGTGTGGGATAGTGGCATCG
1 G-ATTACGTGTAAGACCCTGTATGGGACAGTGACATCG
64572672 ATACGTGTTA
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
42 1 0.01
43 59 0.88
44 7 0.10
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (43 bp):
GATTACGTGTAAGACCCTGTATGGGACAGTGACATCGTTAATC
Found at i:64575692 original size:40 final size:41
Alignment explanation
Indices: 64575632--64575852 Score: 271
Period size: 40 Copynumber: 5.6 Consensus size: 41
64575622 TATTCGAATG
*
64575632 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
64575672 ATATCCGGACTAAGAT-CCGAAGGCATTTGTTCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
* *
64575712 ATATCCGGGCTAAGA-CCCAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
64575752 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
64575792 ATATCCGGGCTAAGA-CTCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
64575832 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
64575853 ATACTTGGGT
Statistics
Matches: 156, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 13 0.08
40 137 0.88
41 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:64576120 original size:22 final size:22
Alignment explanation
Indices: 64576080--64576121 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
64576070 GAATGTGCAT
*
64576080 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
64576102 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
64576122 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:64577908 original size:27 final size:28
Alignment explanation
Indices: 64577878--64577930 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
64577868 TATTTTATTT
64577878 ATATTAGGA-TAATTAATATTAAGATAA
1 ATATTAGGATTAATTAATATTAAGATAA
* *
64577905 ATATTAGGATTATTTAATTTTAAGAT
1 ATATTAGGATTAATTAATATTAAGAT
64577931 TTTATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.43
Consensus pattern (28 bp):
ATATTAGGATTAATTAATATTAAGATAA
Done.