Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 203 of 295
Found at i:64854140 original size:45 final size:45
Alignment explanation
Indices: 64854076--64854170 Score: 181
Period size: 45 Copynumber: 2.1 Consensus size: 45
64854066 GAGACATGGG
64854076 TGTGTGTCTCAGCCGTGTGTGACACACGGTCATGTTACACGGCCA
1 TGTGTGTCTCAGCCGTGTGTGACACACGGTCATGTTACACGGCCA
*
64854121 TGTGTGTCTCAGCCGTGTGTGACACACGGTCATGTTACACGGCCG
1 TGTGTGTCTCAGCCGTGTGTGACACACGGTCATGTTACACGGCCA
64854166 TGTGT
1 TGTGT
64854171 CCTCTAGTGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.16, C:0.25, G:0.31, T:0.28
Consensus pattern (45 bp):
TGTGTGTCTCAGCCGTGTGTGACACACGGTCATGTTACACGGCCA
Found at i:64856660 original size:17 final size:17
Alignment explanation
Indices: 64856640--64856673 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64856630 TTCGTATATT
*
64856640 ATACTAATTATATCTAA
1 ATACTAAGTATATCTAA
64856657 ATACTAAGTATATCTAA
1 ATACTAAGTATATCTAA
64856674 GCGAATCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (17 bp):
ATACTAAGTATATCTAA
Found at i:64856843 original size:63 final size:63
Alignment explanation
Indices: 64856744--64856870 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
64856734 GACTTGCCCA
64856744 TCTTTTTAAATCAAATAAAATAGATGTATATGATAAGATAATCCACTTTCTTTATTATCTTAC
1 TCTTTTTAAATCAAATAAAATAGATGTATATGATAAGATAATCCACTTTCTTTATTATCTTAC
64856807 TCTTTTTAAATCAAATAAAATAGATGTATATGATAAGATAATCCACTTTCTTTATTATCTTAC
1 TCTTTTTAAATCAAATAAAATAGATGTATATGATAAGATAATCCACTTTCTTTATTATCTTAC
64856870 T
1 T
64856871 TTATTCTTAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (63 bp):
TCTTTTTAAATCAAATAAAATAGATGTATATGATAAGATAATCCACTTTCTTTATTATCTTAC
Found at i:64859605 original size:18 final size:18
Alignment explanation
Indices: 64859582--64859618 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
64859572 ATGAAGCTGG
* *
64859582 TTTATCTCATTTTTCCAC
1 TTTATCTAATTTATCCAC
64859600 TTTATCTAATTTATCCAC
1 TTTATCTAATTTATCCAC
64859618 T
1 T
64859619 GCGTCGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTATCTAATTTATCCAC
Found at i:64863137 original size:40 final size:39
Alignment explanation
Indices: 64863053--64863237 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 39
64863043 TCGAATGATG
* * * *
64863053 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
64863093 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
64863133 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAA
*
64863172 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
64863213 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
64863238 AACAAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 34 0.27
40 80 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64863259 original size:79 final size:78
Alignment explanation
Indices: 64863054--64863270 Score: 219
Period size: 79 Copynumber: 2.7 Consensus size: 78
64863044 CGAATGATGT
* *
64863054 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACCATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
64863117 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* * * *
64863134 CCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
64863197 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
64863213 CCGGGCTATGTCCCGAAGGCATTTGAACAAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGTT-AAGTCCGAAGG
64863271 TACGTTATTC
Statistics
Matches: 113, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
78 3 0.03
79 66 0.58
80 44 0.39
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:64864662 original size:16 final size:16
Alignment explanation
Indices: 64864641--64864690 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 16
64864631 AATAATACTA
*
64864641 ATATATATTAGAATAT
1 ATATATAATAGAATAT
64864657 ATATATAATAGAATAGAT
1 ATATATAATAGAAT--AT
64864675 AAATATATAATAGAAT
1 --ATATATAATAGAAT
64864691 TAATATTCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 13 0.45
18 2 0.07
20 14 0.48
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (16 bp):
ATATATAATAGAATAT
Found at i:64865768 original size:22 final size:22
Alignment explanation
Indices: 64865734--64865789 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
64865724 TTTATTTATC
64865734 TATTTA-ATATTATAT-TCAATT
1 TATTTATATATTATATCT-AATT
*
64865755 TATTTATATATTATATCTATTT
1 TATTTATATATTATATCTAATT
64865777 TATTATATATATT
1 TATT-TATATATT
64865790 CTAAATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 6 0.19
22 16 0.52
23 9 0.29
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (22 bp):
TATTTATATATTATATCTAATT
Found at i:64865782 original size:14 final size:14
Alignment explanation
Indices: 64865763--64865855 Score: 51
Period size: 14 Copynumber: 6.0 Consensus size: 14
64865753 TTTATTTATA
*
64865763 TATTATATCTATTT
1 TATTATATATATTT
64865777 TATTATATATATTCT
1 TATTATATATATT-T
*
64865792 AAATATTTTATATATTTT
1 ---TATTATATATA-TTT
* *
64865810 TATATTTATATATTAA
1 TAT-TATATATATT-T
* *
64865826 TATTATTTTTATATAT
1 TATTA--TATATATTT
64865842 TATTATATATATTT
1 TATTATATATATTT
64865856 ATTTCTATTT
Statistics
Matches: 61, Mismatches: 9, Indels: 18
0.69 0.10 0.20
Matches are distributed among these distances:
14 19 0.31
15 7 0.11
16 16 0.26
17 6 0.10
18 11 0.18
19 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTATATATATTT
Found at i:64865817 original size:16 final size:16
Alignment explanation
Indices: 64865757--64865859 Score: 64
Period size: 16 Copynumber: 6.1 Consensus size: 16
64865747 ATTCAATTTA
*
64865757 TTTATATATTATATCTAT
1 TTTATAT-TTATATAT-T
*
64865775 TTTAT-TATATATATT
1 TTTATATTTATATATT
**
64865790 CTAAATATTTTATATATT
1 -TTTATA-TTTATATATT
64865808 TTTATATTTATATATT
1 TTTATATTTATATATT
*
64865824 AATATTATTTTTATATATT
1 --T-TTATATTTATATATT
* * *
64865843 ATTATATATATTTATT
1 TTTATATTTATATATT
64865859 T
1 T
64865860 CTATTTTTTG
Statistics
Matches: 66, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
15 1 0.02
16 31 0.47
17 5 0.08
18 15 0.23
19 14 0.21
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTATATTTATATATT
Found at i:64867148 original size:14 final size:14
Alignment explanation
Indices: 64867126--64867159 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
64867116 AATAGAAAAC
*
64867126 TTTTCATCACTTTT
1 TTTTTATCACTTTT
64867140 TTTTTATCACTTTT
1 TTTTTATCACTTTT
*
64867154 TCTTTA
1 TTTTTA
64867160 GCCTCCGGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTATCACTTTT
Found at i:64867471 original size:19 final size:20
Alignment explanation
Indices: 64867439--64867484 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
64867429 GATTTGATTA
64867439 TTATTATATATA-T-TTTACT
1 TTATTATATATATTCTTTA-T
* *
64867458 TTATTATCTTTATTCTTTAT
1 TTATTATATATATTCTTTAT
64867478 TTATTAT
1 TTATTAT
64867485 TTACTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 10 0.43
20 9 0.39
21 4 0.17
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATTATATATATTCTTTAT
Found at i:64868493 original size:16 final size:16
Alignment explanation
Indices: 64868474--64868524 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
64868464 AAGAAAGAGA
64868474 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
64868490 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
64868506 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
64868522 AAA
1 AAA
64868525 ATACTAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:64874177 original size:40 final size:40
Alignment explanation
Indices: 64874110--64874246 Score: 184
Period size: 40 Copynumber: 3.4 Consensus size: 40
64874100 CAGTTATTTG
* * *
64874110 TGGCACTTAGTGTGTGATACGATATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATGTA
* *
64874150 TGGTACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATGTA
* * * * *
64874190 TGGCATTTAGTATGTGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATGTA
64874230 TGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
64874247 GATATTGATT
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.36
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATGTA
Found at i:64874268 original size:28 final size:28
Alignment explanation
Indices: 64874228--64874282 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
64874218 TTCGGCTATG
*
64874228 TATGGCACTTAGTGTGCGAGATATTGAT
1 TATGGCACTTAGTGTGCGAGACATTGAT
64874256 TATGGCACTTAGTGTGCGAGACATTGA
1 TATGGCACTTAGTGTGCGAGACATTGA
64874283 GTACTCAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
TATGGCACTTAGTGTGCGAGACATTGAT
Found at i:64876912 original size:42 final size:41
Alignment explanation
Indices: 64876849--64877013 Score: 161
Period size: 42 Copynumber: 3.9 Consensus size: 41
64876839 ACATTAGGGT
*
64876849 TATGAGTTTACGTGTAAGACCATATCTGGGATATGGCATC-A
1 TATGAGATT-CGTGTAAGACCATATCTGGGATATGGCATCGA
* * * *
64876890 TTATGAGATTTCGTGTAGGACCATGTTTGGGACATGGCATCGA
1 -TATGAGA-TTCGTGTAAGACCATATCTGGGATATGGCATCGA
* * * *
64876933 TATGGGAATCGTGTAAGACCATAGCTGGGCTATTGGCATCGA
1 TATGAGATTCGTGTAAGACCATATCTGGGATA-TGGCATCGA
* * * *
64876975 TATAAGATCCTATGTAAGATCATATCTGGGATATGGCAT
1 TATGAGATTC-GTGTAAGACCATATCTGGGATATGGCAT
64877014 TAGTATGATT
Statistics
Matches: 98, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 18 0.18
42 59 0.60
43 21 0.21
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (41 bp):
TATGAGATTCGTGTAAGACCATATCTGGGATATGGCATCGA
Found at i:64882064 original size:22 final size:23
Alignment explanation
Indices: 64882034--64882077 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
64882024 GATTTATGAG
*
64882034 AATGAATGCTTTATGTT-TGAAA
1 AATGAATGCTATATGTTGTGAAA
*
64882056 AATGTATGCTATATGTTGTGAA
1 AATGAATGCTATATGTTGTGAA
64882078 TTGATTAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41
Consensus pattern (23 bp):
AATGAATGCTATATGTTGTGAAA
Found at i:64894309 original size:18 final size:18
Alignment explanation
Indices: 64894286--64894322 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
64894276 CTATAGAAGA
*
64894286 AAAGATGCCAACTATCTT
1 AAAGATACCAACTATCTT
64894304 AAAGATACCAACTATCTT
1 AAAGATACCAACTATCTT
64894322 A
1 A
64894323 TATGAAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (18 bp):
AAAGATACCAACTATCTT
Found at i:64896899 original size:21 final size:21
Alignment explanation
Indices: 64896875--64896916 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
64896865 CACACAAGAA
64896875 ATTCAAAAAATATTTGCTCTC
1 ATTCAAAAAATATTTGCTCTC
*
64896896 ATTCAAAGAATATTTGCTCTC
1 ATTCAAAAAATATTTGCTCTC
64896917 TCTTTCCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.38
Consensus pattern (21 bp):
ATTCAAAAAATATTTGCTCTC
Found at i:64899696 original size:30 final size:30
Alignment explanation
Indices: 64899656--64899719 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
64899646 CATATCAGCC
64899656 CACAGTTTTCATTAAATCAGATGTTTACTA
1 CACAGTTTTCATTAAATCAGATGTTTACTA
*
64899686 CACATTTTTCATTAAATCAGATGTTTACTA
1 CACAGTTTTCATTAAATCAGATGTTTACTA
64899716 CACA
1 CACA
64899720 CATGCTCATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (30 bp):
CACAGTTTTCATTAAATCAGATGTTTACTA
Found at i:64906426 original size:27 final size:27
Alignment explanation
Indices: 64906396--64906573 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64906386 ATATTGAGTC
* * * *
64906396 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
64906423 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
64906450 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
64906478 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
64906505 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
64906532 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
64906559 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64906574 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:64906535 original size:82 final size:81
Alignment explanation
Indices: 64906417--64906572 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
64906407 TGCTATATAA
* *
64906417 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
64906482 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
64906499 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
64906563 CACTTAGTGC
65 CACTTAGTGC
64906573 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:64912134 original size:23 final size:23
Alignment explanation
Indices: 64912100--64912144 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
64912090 ACCCGCATAC
*
64912100 GTCACCGGAATAGGGTTAAAGGT
1 GTCACCGAAATAGGGTTAAAGGT
64912123 GTCACCGAAATAGGGTTAAAGG
1 GTCACCGAAATAGGGTTAAAGG
64912145 CATCACCGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.20
Consensus pattern (23 bp):
GTCACCGAAATAGGGTTAAAGGT
Found at i:64912150 original size:23 final size:23
Alignment explanation
Indices: 64912101--64912152 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
64912091 CCCGCATACG
* **
64912101 TCACCGGAATAGGGTTAAAGGTG
1 TCACCGAAATAGGGTTAAAGGCA
64912124 TCACCGAAATAGGGTTAAAGGCA
1 TCACCGAAATAGGGTTAAAGGCA
64912147 TCACCG
1 TCACCG
64912153 GACATATCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.19, G:0.29, T:0.19
Consensus pattern (23 bp):
TCACCGAAATAGGGTTAAAGGCA
Found at i:64913667 original size:43 final size:42
Alignment explanation
Indices: 64913596--64913761 Score: 140
Period size: 43 Copynumber: 3.9 Consensus size: 42
64913586 TGGAAAGCTC
* * * *
64913596 ATACAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATATCCCAGACGTGGTCTTACACGAAATCAA
*
64913638 ATATCGATGCCACTATCCCAGACAG-GGTCTTACACGAAATCAA
1 ATA-CGATGCCAATATCCCAGAC-GTGGTCTTACACGAAATCAA
* * * * * * *
64913681 ATACGATACCGATGTCCTAGACATGGTC-TACACATAAATTATA
1 ATACGATGCCAATATCCCAGACGTGGTCTTACAC-GAAATCA-A
* *
64913724 AGT-CGATGCCAATGTCCCAGATGTGGTCTTACACGAAA
1 A-TACGATGCCAATATCCCAGACGTGGTCTTACACGAAA
64913762 ACACATATCG
Statistics
Matches: 98, Mismatches: 19, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
41 5 0.05
42 26 0.27
43 60 0.61
44 7 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
ATACGATGCCAATATCCCAGACGTGGTCTTACACGAAATCAA
Found at i:64916573 original size:68 final size:68
Alignment explanation
Indices: 64916427--64916582 Score: 151
Period size: 68 Copynumber: 2.3 Consensus size: 68
64916417 CCTAGCCGAT
* * * *
64916427 TATCTCGTAGCTC-CTTGTCTACATGGTGTCCTTCACTTGGATCACTCATGCGACCTAGCTACAT
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGGATCACACATGCGACCTAGCTACAT
*
64916491 TTA
66 ATA
* * *
64916494 TCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGGATCACACATGCGACCTAGCTA
64916556 CTATATA
63 C-ATATA
64916563 GTATCTCGTAGC-CTTCTTGT
1 -TATCTCGTAGCTC-TCTTGT
64916583 ACACATGATG
Statistics
Matches: 73, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
67 5 0.07
68 33 0.45
69 14 0.19
70 21 0.29
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGGATCACACATGCGACCTAGCTACAT
ATA
Found at i:64932702 original size:28 final size:27
Alignment explanation
Indices: 64932644--64932704 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
64932634 CCCCGGTTTT
* *
64932644 TAAAATTACCGAAATACCCTTGCAGTG
1 TAAAATTACCGAAATACCCCTGCAGGG
* *
64932671 TAAAATTACCGAAAATGCCCCTGTAGGG
1 TAAAATTACCG-AAATACCCCTGCAGGG
64932699 TAAAAT
1 TAAAAT
64932705 GATTGTTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 11 0.38
28 18 0.62
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCCTGCAGGG
Found at i:64934393 original size:46 final size:48
Alignment explanation
Indices: 64934308--64934428 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 48
64934298 TGATATGTGT
* * *
64934308 GCTAGTGTAAGACATGTCTGAGACATGCATCTACTTTGAGAT-GA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCTACCTTGAGATAGACAA
* *
64934354 GCTAGTGTAAGACATGTCTGGGACATGTATC-AGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCTA-CCTTGAGATAGACAA
* * *
64934402 GCTAGTGTAAGACCTATTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
64934429 GTTATGTGTG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 1 0.02
46 37 0.58
47 1 0.02
48 25 0.39
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCTACCTTGAGATAGACAA
Found at i:64937984 original size:46 final size:46
Alignment explanation
Indices: 64937886--64938097 Score: 175
Period size: 46 Copynumber: 4.5 Consensus size: 46
64937876 ATTGTGAGCT
* * *
64937886 AGTGTAAGATCATGTCTGGGACATGGCATCAGCATCGAGAC-AAGTCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACGAAG-CC
*
64937933 TAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGGCGTAAGCC
1 -AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACG-AAGCC
* * *
64937980 AGTGTAAGA-CATGTCTGGGACAAGCATCGG-CTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGACGA-AGCC
* * * * * *
64938026 AATGTAAGACCATGTCTAGGACATGGCATC-GACTTGAGGTATG-AGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGA-G-ACGAAGCC
*
64938073 AGTGTAAGACCATGTCTGTGACATG
1 AGTGTAAGACCATGTCTGGGACATG
64938098 GCATTGGCAC
Statistics
Matches: 139, Mismatches: 16, Indels: 20
0.79 0.09 0.11
Matches are distributed among these distances:
45 3 0.02
46 59 0.42
47 54 0.39
48 20 0.14
49 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACGAAGCC
Found at i:64938077 original size:93 final size:94
Alignment explanation
Indices: 64937880--64938101 Score: 231
Period size: 93 Copynumber: 2.4 Consensus size: 94
64937870 TGGGTTATTG
* * *
64937880 TGAGCTAGTGTAAGATCATGTCTGGGACATGGCATCAGCATCGAGACAAGTCCTAGTGTAAGACA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCAGCATCGAGACAAGTCCTAATGTAAGACA
* * *
64937945 TGTCTGGGACATGCATCGGCCTCGAGGCG
66 TGTCTAGGACATGCATCGGACTCGAGGCA
* * * *
64937974 TAAGCCAGTGTAAGA-CATGTCTGGGACA-AGCATCGGC-TACGAGATGATAGT-C-AATGTAAG
1 TGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCAGCAT-CGAGA-CA-AGTCCTAATGTAAG
* *
64938034 ACCATGTCTAGGACATGGCATC-GACTTGAGGTA
63 A-CATGTCTAGGACAT-GCATCGGACTCGAGGCA
* *
64938067 TGAGCTAGTGTAAGACCATGTCTGTGACATGGCAT
1 TGAGCTAGTGTAAGACCATGTCTGGGACATAGCAT
64938102 TGGCACCTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
91 1 0.01
92 20 0.19
93 48 0.45
94 33 0.31
95 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
TGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCAGCATCGAGACAAGTCCTAATGTAAGACA
TGTCTAGGACATGCATCGGACTCGAGGCA
Found at i:64938079 original size:47 final size:46
Alignment explanation
Indices: 64937880--64938101 Score: 175
Period size: 47 Copynumber: 4.7 Consensus size: 46
64937870 TGGGTTATTG
64937880 TGAGCTAGTGTAAGATCATGTCTGGGACATGGCATC-AGCATCGAGACA
1 TGAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGA-C-TCGAGACA
* ** * * *
64937928 AGTCCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGGCG
1 TGAGCTAGTGTAAGACATGTCTGGGACATGGCATC-GACTCGAGACA
* * * * *
64937974 TAAGCCAGTGTAAGACATGTCTGGGACA-AGCATCGGCTACGAGATGA
1 TGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGACT-CGAGA-CA
* * * **
64938021 T-AG-TCAATGTAAGACCATGTCTAGGACATGGCATCGACTTGAGGTA
1 TGAGCT-AGTGTAAGA-CATGTCTGGGACATGGCATCGACTCGAGACA
*
64938067 TGAGCTAGTGTAAGACCATGTCTGTGACATGGCAT
1 TGAGCTAGTGTAAGA-CATGTCTGGGACATGGCAT
64938102 TGGCACCTTA
Statistics
Matches: 138, Mismatches: 26, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
45 3 0.02
46 55 0.40
47 59 0.43
48 21 0.15
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
TGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTCGAGACA
Found at i:64941423 original size:9 final size:9
Alignment explanation
Indices: 64941409--64941437 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
64941399 TGGCCCCAAC
64941409 AGAGTTGAA
1 AGAGTTGAA
64941418 AGAGTTGAA
1 AGAGTTGAA
64941427 AGAGTTGAA
1 AGAGTTGAA
64941436 AG
1 AG
64941438 TACAACTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.34, T:0.21
Consensus pattern (9 bp):
AGAGTTGAA
Found at i:64944934 original size:27 final size:28
Alignment explanation
Indices: 64944887--64944963 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 28
64944877 GGAAGTAGTT
* * *
64944887 GGGCCTGATGGGCCATATGAATGTGATC
1 GGGCCTAATGGGCCATATGAACGAGATC
* *
64944915 GGGCCTAAT-GGCCATGTGAACGAGATT
1 GGGCCTAATGGGCCATATGAACGAGATC
* *
64944942 GGGCCTAAAGGGGCCAAATGAA
1 GGGCCT-AATGGGCCATATGAA
64944964 TAAGTGTGGA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
27 20 0.51
28 10 0.26
29 9 0.23
ACGTcount: A:0.27, C:0.18, G:0.35, T:0.19
Consensus pattern (28 bp):
GGGCCTAATGGGCCATATGAACGAGATC
Found at i:64945280 original size:27 final size:27
Alignment explanation
Indices: 64945222--64945561 Score: 330
Period size: 27 Copynumber: 12.7 Consensus size: 27
64945212 TAATAAAGAG
64945222 AAATTACCGAAATACCC-C-AGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
* * *
64945248 AAATTACCGAAACACCTTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
64945275 AAATTATCAAAATACCC-CTGATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
** * *
64945302 AAATTACTAAAATACCCTTGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
64945328 AAATTACTGAAATACCCTCGATTAGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
64945355 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
64945382 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
64945409 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * ** *
64945436 AAATTATTGAGATACCCTTAATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
64945463 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
64945490 AAATTACCAAAACACCCCCGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
64945517 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
**
64945544 AAATTACTAAAATACCCT
1 AAATTACCGAAATACCCT
64945562 TGTAGTGTAA
Statistics
Matches: 257, Mismatches: 51, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
26 40 0.16
27 216 0.84
28 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:64945440 original size:81 final size:81
Alignment explanation
Indices: 64945222--64945588 Score: 393
Period size: 81 Copynumber: 4.6 Consensus size: 81
64945212 TAATAAAGAG
* * * * *
64945222 AAATTACCGAAATACCC-C-AGTTTGTAAAATTACCGAAACACCTTCAATTTGTAAAATTATCAA
1 AAATTACCAAAATACCCTCGA-TTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCAA
*
64945285 AATACCCCTGATTTGTA
65 AATACCCTTGATTTGTA
* * * * *
64945302 AAATTACTAAAATACCCTTGA-TTGTGAAATTACTGAAATACCCTCGATTAGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAA
*
64945366 ATACCCTTGATTTGTG
66 ATACCCTTGATTTGTA
* ** *
64945382 AAATTACCAAAACACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATTGAG
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAA
* *
64945447 ATACCCTTAATTTTTA
66 ATACCCTTGATTTGTA
* ** * * * *
64945463 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAACACCCCCGATTTATAAAATTATCGAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAA
*
64945528 ATACCCTTG-TAGTGTA
66 ATACCCTTGAT-TTGTA
* * * * *
64945544 AAATTACTAAAATACCCTTG-TAGTGTAAAATGACTGACATACCCT
1 AAATTACCAAAATACCCTCGAT-TTGTAAAATTACTGAAATACCCT
64945589 TGTAGGGTAA
Statistics
Matches: 236, Mismatches: 46, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
80 85 0.36
81 150 0.64
82 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAA
ATACCCTTGATTTGTA
Found at i:64945591 original size:27 final size:27
Alignment explanation
Indices: 64945525--64945606 Score: 128
Period size: 27 Copynumber: 3.0 Consensus size: 27
64945515 TAAAATTATC
*
64945525 GAAATACCCTTGTAGTGTAAAATTACT
1 GAAATACCCTTGTAGTGTAAAATGACT
*
64945552 AAAATACCCTTGTAGTGTAAAATGACT
1 GAAATACCCTTGTAGTGTAAAATGACT
* *
64945579 GACATACCCTTGTAGGGTAAAATGACT
1 GAAATACCCTTGTAGTGTAAAATGACT
64945606 G
1 G
64945607 TTTTTCCCTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (27 bp):
GAAATACCCTTGTAGTGTAAAATGACT
Found at i:64948437 original size:20 final size:18
Alignment explanation
Indices: 64948403--64948439 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
64948393 GCAACTCATA
64948403 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
64948421 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
64948440 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:64949382 original size:26 final size:26
Alignment explanation
Indices: 64949350--64949407 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
64949340 ATGGGCTTCG
64949350 GCCCAACTGAGGCTAAGATGGGCTAA
1 GCCCAACTGAGGCTAAGATGGGCTAA
*
64949376 GCCCAACTGAGGCTAAGATGGGCTAG
1 GCCCAACTGAGGCTAAGATGGGCTAA
64949402 GCCCAA
1 GCCCAA
64949408 TTGATTTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.29, C:0.26, G:0.31, T:0.14
Consensus pattern (26 bp):
GCCCAACTGAGGCTAAGATGGGCTAA
Found at i:64949422 original size:26 final size:27
Alignment explanation
Indices: 64949393--64949444 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
64949383 TGAGGCTAAG
* * *
64949393 ATGGGCTA-GGCCCAATTGATTTTGTT
1 ATGGGCTATGACCCAAATGATATTGTT
64949419 ATGGGCTATGACCCAAATGATATTGT
1 ATGGGCTATGACCCAAATGATATTGT
64949445 AACGGGCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (27 bp):
ATGGGCTATGACCCAAATGATATTGTT
Found at i:64949451 original size:27 final size:26
Alignment explanation
Indices: 64949395--64949452 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
64949385 AGGCTAAGAT
* * * * *
64949395 GGGCTAGGCCCAATTGATTTTGTTAT
1 GGGCTAGACCCAAATGATATTGTAAC
64949421 GGGCTATGACCCAAATGATATTGTAAC
1 GGGCTA-GACCCAAATGATATTGTAAC
64949448 GGGCT
1 GGGCT
64949453 TTAGCCCACG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (26 bp):
GGGCTAGACCCAAATGATATTGTAAC
Found at i:64952646 original size:389 final size:380
Alignment explanation
Indices: 64951930--64952701 Score: 1382
Period size: 389 Copynumber: 2.0 Consensus size: 380
64951920 GAAGATTGAA
64951930 TTGGTGCTAGTAGTTTGTGAGTTTATAGATGTGTTTCTAGAAGAATTGCCCGGATTACCACCAGC
1 TTGGTGCTAGTAGTTTGTGAGTTTATAGATGTGTTTCTAGAAGAATTGCCCGGATTACCACCAGC
*
64951995 TAGGGAATTTGAATTCGGCATCGAGTTGGTTCCTAGTATGGCACCTATCTCGATCCCTCCTTATA
66 TAGGGAATTTGAATTCGGCATCGAGTTGGTCCCTAGTATGGCACCTATCTCGATCCCTCCTTATA
*
64952060 GAATGCCCCCAACAGAGTTCAAAGAGTTAAAAGTACAACTGCATGAGTTAACGGATAAAGGTTCT
131 GAATGCCCCCAACAGAGTTCAAAGAGTTAAAAGTACAACTGCAAGAGTTAACGGATAAAGGTTCT
64952125 ATGAGACCTAGTTATTCACCGTGGGCGCACCAGTGTTGTTTGTGAAAAAAGAAAGACAGGTCGAT
196 ATGAGACCTAGTTATTCACCGTGGGCGCACCAGTGTTGTTTGTGAAAAAAGAAAGACAGGTCGAT
*
64952190 GAGGTTATGTATTGATTATAGATAGCTTAATAAGGTAACTGTGAAGAACAAGTTTCATTTTCCAA
261 GAGGTTATGTATTGATTATAGATAGCTTAATAAGGTAACTGTGAAGAACAAGTATCATTTT----
*
64952255 GGACCAAGGATTGATGATTTATTCGATCAGTTGAAGGGAGCCACGGTGTTCTCCAATATAGAC
322 ---CCAAGGATTGATGATTTATTCGATCAGTTGAAGAGAGCCA-GGTGTTCTCCAATATAGAC
*
64952318 TTGGTGCTAGTAGTTTGTGAGTTTATAGATGTGTTTCTGGAAGAATTGCCCGGATTACCACCAGC
1 TTGGTGCTAGTAGTTTGTGAGTTTATAGATGTGTTTCTAGAAGAATTGCCCGGATTACCACCAGC
*
64952383 TAGGGAATTTGAATTCGGCTTCGAGTTGGTCCCTAGTATGGCACCTATCTCGATCCCTCCTTATA
66 TAGGGAATTTGAATTCGGCATCGAGTTGGTCCCTAGTATGGCACCTATCTCGATCCCTCCTTATA
* *
64952448 GAATGGGCCCCAACAGAGTTCAAAGAGTTAAAATTACAACTGCAAGAGTTAACGGATAAAGGTTC
131 GAAT-GCCCCCAACAGAGTTCAAAGAGTTAAAAGTACAACTGCAAGAGTTAACGGATAAAGGTTC
64952513 TATGAGACCTAGTTATTCACCGTGGGCGCACCAGTGTTGTTTGTGAAAAAAGAAAGACAGGTCGA
195 TATGAGACCTAGTTATTCACCGTGGGCGCACCAGTGTTGTTTGTGAAAAAAGAAAGACAGGTCGA
*
64952578 TGAGGTTATGTATTGATTATAGATAGCTTAATAAGGTAACTGTGAAGAACAAGTATCCTTTTCCA
260 TGAGGTTATGTATTGATTATAGATAGCTTAATAAGGTAACTGTGAAGAACAAGTATCATTTTCCA
64952643 AGGATTGATGATTTATTCGATCAGTTGAAGAGAGCCAGGTGTTCTCCAATATAGAC
325 AGGATTGATGATTTATTCGATCAGTTGAAGAGAGCCAGGTGTTCTCCAATATAGAC
64952699 TTG
1 TTG
64952702 AGGTCTGGTT
Statistics
Matches: 374, Mismatches: 9, Indels: 9
0.95 0.02 0.02
Matches are distributed among these distances:
381 22 0.06
382 39 0.10
388 131 0.35
389 182 0.49
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (380 bp):
TTGGTGCTAGTAGTTTGTGAGTTTATAGATGTGTTTCTAGAAGAATTGCCCGGATTACCACCAGC
TAGGGAATTTGAATTCGGCATCGAGTTGGTCCCTAGTATGGCACCTATCTCGATCCCTCCTTATA
GAATGCCCCCAACAGAGTTCAAAGAGTTAAAAGTACAACTGCAAGAGTTAACGGATAAAGGTTCT
ATGAGACCTAGTTATTCACCGTGGGCGCACCAGTGTTGTTTGTGAAAAAAGAAAGACAGGTCGAT
GAGGTTATGTATTGATTATAGATAGCTTAATAAGGTAACTGTGAAGAACAAGTATCATTTTCCAA
GGATTGATGATTTATTCGATCAGTTGAAGAGAGCCAGGTGTTCTCCAATATAGAC
Found at i:64956047 original size:30 final size:30
Alignment explanation
Indices: 64956013--64956070 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
64956003 ATTTCCAGAC
* * *
64956013 CTAGGGGTAAAATGGTTATTTTGTCAAAAT
1 CTAGGGCTAAAATGGTCATTTTATCAAAAT
64956043 CTAGGGCTAAAATGGTCATTTTATCAAA
1 CTAGGGCTAAAATGGTCATTTTATCAAA
64956071 GATGTGAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (30 bp):
CTAGGGCTAAAATGGTCATTTTATCAAAAT
Found at i:64956540 original size:46 final size:45
Alignment explanation
Indices: 64956405--64956617 Score: 153
Period size: 46 Copynumber: 4.6 Consensus size: 45
64956395 GGGTTATTGT
* * **
64956405 GAGCTAGTGTAAGACATGTCTGGAACATGCATCGGCCAC-ATTATAA
1 GAGCTAGTGTAAGACATGTCTGG-ACATGCATCGGCCTCGA-GACGA
* *
64956451 GAGCAAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGA
1 GAGCTAGTGTAAGA-CATGTCT-GGACAT-GCATCGGCCTCGAGACGA
* *
64956499 GTGCTAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGACG-A
* * * * * * *
64956546 -AGCCAATATAAGACATGTTTGGGACAAGCATTGG-CTACGAGATGA
1 GAGCTAGTGTAAGACATGTCT-GGACATGCATCGGCCT-CGAGACGA
* *
64956591 TAGCCAGTGTAAGACCATGTCTTGGAC
1 GAGCTAGTGTAAGA-CATGTC-TGGAC
64956618 GTGGAATCAA
Statistics
Matches: 136, Mismatches: 22, Indels: 17
0.78 0.13 0.10
Matches are distributed among these distances:
45 3 0.02
46 73 0.54
47 33 0.24
48 26 0.19
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGACATGCATCGGCCTCGAGACGA
Found at i:64966774 original size:19 final size:20
Alignment explanation
Indices: 64966750--64966787 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64966740 GGTACCACCA
64966750 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64966769 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64966788 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64967083 original size:46 final size:45
Alignment explanation
Indices: 64967016--64967184 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
64967006 CGCCCCTAAG
* *
64967016 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTT-GCATCCATAAA
* * *
64967062 TGAACTCGGACTCAACTCAACGAGTTCGCATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTGCATCCATAAA
* * *
64967109 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGAC-GTTGCATCCATAAA
64967155 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
64967185 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 1 0.01
46 56 0.54
47 28 0.27
48 1 0.01
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCATCCATAAA
Found at i:64967127 original size:93 final size:93
Alignment explanation
Indices: 64967017--64967187 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
64967007 GCCCCTAAGT
* *
64967017 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
64967082 CGAGTTCGCATGCCTAGTTACATCTCAC
66 CGAGTTCGCATGCCTAGTTACATCTCAC
* * *
64967110 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
64967175 CGAGTTCGGATGC
66 CGAGTTCGCATGC
64967188 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGCATGCCTAGTTACATCTCAC
Found at i:64974361 original size:19 final size:20
Alignment explanation
Indices: 64974337--64974374 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64974327 GGTACCACCA
64974337 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64974356 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64974375 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64974670 original size:46 final size:46
Alignment explanation
Indices: 64974603--64974767 Score: 163
Period size: 46 Copynumber: 3.6 Consensus size: 46
64974593 CGCCCCTAAG
* *
64974603 TGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAA
1 TGAACTCAGACTCAACTCAACGAGTTCGGGCATTAGCATCCATAAA
* * **
64974649 TGAACTCAGACTCAACTCAACGAGTTCGGATGC-TTAG-TTACATCTCA
1 TGAACTCAGACTCAACTCAACGAGTTCGG--GCATTAGCATCCAT-AAA
* ** * * * *
64974696 CGAACTTGGAGTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCAGACTCAACTCAACGAGTTCGGGCATTAGCATCCATAAA
*
64974742 TGAACTCGGACTCAACTCAACGAGTT
1 TGAACTCAGACTCAACTCAACGAGTT
64974768 TGGATGCTCA
Statistics
Matches: 94, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 58 0.62
47 33 0.35
48 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
TGAACTCAGACTCAACTCAACGAGTTCGGGCATTAGCATCCATAAA
Found at i:64975228 original size:30 final size:30
Alignment explanation
Indices: 64975194--64975253 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
64975184 ATTTAATACG
64975194 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
64975224 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
64975254 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:64978336 original size:53 final size:54
Alignment explanation
Indices: 64978154--64978360 Score: 220
Period size: 53 Copynumber: 3.8 Consensus size: 54
64978144 ATTAGGGCTT
* * * * *
64978154 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * *
64978208 AAGGAAATCTTGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * * * *
64978263 AAAGATCCCATGTAAGACCATG-CTAAGGCATGGCAATGGTGAGTTC-ATAAGGT
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTCTATAAGGC
*
64978316 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
64978361 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
53 44 0.36
54 38 0.31
55 41 0.33
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:64979397 original size:26 final size:26
Alignment explanation
Indices: 64979367--64979467 Score: 139
Period size: 27 Copynumber: 3.8 Consensus size: 26
64979357 AGCATGGCTG
* *
64979367 CCAGAACAGATAATGTGACAGTGTCA
1 CCAGAACAGATAATGTGGCAGTGCCA
*
64979393 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGTGCCA
64979420 CCAGAACAGATATATGTGGCAGTGCCA
1 CCAGAACAGATA-ATGTGGCAGTGCCA
*
64979447 CCAGATCAGATAATTGTGGCA
1 CCAGAACAGATAA-TGTGGCA
64979468 TAGGCACCAG
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
26 14 0.21
27 52 0.78
28 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGTGCCA
Found at i:64979451 original size:54 final size:53
Alignment explanation
Indices: 64979367--64979477 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
64979357 AGCATGGCTG
*
64979367 CCAGAACAGATAATGTGACAGTGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCA
* * * *
64979420 CCAGAACAGATATATGTGGCAGTGCCACCAGATCAGATAATTGTGGCATAGGCA
1 CCAGAACAGATA-ATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCA
64979474 CCAG
1 CCAG
64979478 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 12 0.23
54 40 0.77
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCA
Found at i:64980950 original size:24 final size:24
Alignment explanation
Indices: 64980912--64980988 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
64980902 CCAACACCAT
*
64980912 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
64980936 TCTCCCTTATTAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
64980960 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
64980984 TCTCC
1 TCTCC
64980989 TGACAGCCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.21, C:0.42, G:0.04, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:64988800 original size:16 final size:16
Alignment explanation
Indices: 64988779--64988813 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
64988769 TCTAGGCCAT
*
64988779 GATGGATTTTATAGAA
1 GATGGATTTTATAAAA
64988795 GATGGATTTTATAAAA
1 GATGGATTTTATAAAA
64988811 GAT
1 GAT
64988814 TCATTAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.37
Consensus pattern (16 bp):
GATGGATTTTATAAAA
Found at i:64990819 original size:36 final size:36
Alignment explanation
Indices: 64990779--64990854 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
64990769 TGTTATTGGG
*
64990779 TGGATT-GCCTCTTACGAGCATCTGGTATGTTTCGGA
1 TGGATTAG-CTCTTACGAGCATCTAGTATGTTTCGGA
* * *
64990815 TGGATTAGCTCTTATGAGCATCTAGTGTGTTTCGGT
1 TGGATTAGCTCTTACGAGCATCTAGTATGTTTCGGA
64990851 TGGA
1 TGGA
64990855 ATATTGATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 34 0.97
37 1 0.03
ACGTcount: A:0.17, C:0.16, G:0.29, T:0.38
Consensus pattern (36 bp):
TGGATTAGCTCTTACGAGCATCTAGTATGTTTCGGA
Found at i:64998680 original size:40 final size:39
Alignment explanation
Indices: 64998490--64998673 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
64998480 TGAATGATGT
* * * *
64998490 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * * *
64998530 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
64998570 CCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64998608 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64998649 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
64998674 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64998695 original size:79 final size:79
Alignment explanation
Indices: 64998542--64998706 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
64998532 GGACTAAGAT
* * **
64998542 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
64998607 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
64998621 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
64998684 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
64998700 CCGAAGG
1 CCGAAGG
64998707 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:65002837 original size:27 final size:27
Alignment explanation
Indices: 65002807--65002985 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
65002797 ATATTGAGTC
* * * *
65002807 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
65002834 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65002861 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65002889 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65002916 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65002943 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65002970 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
65002986 TACAATTTAA
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65002946 original size:82 final size:81
Alignment explanation
Indices: 65002828--65002983 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65002818 TGCTATATAA
* *
65002828 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65002893 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65002910 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65002974 CACTTAGTGC
65 CACTTAGTGC
65002984 TATACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65009269 original size:39 final size:40
Alignment explanation
Indices: 65009166--65009350 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
65009156 TTGAATGATG
* * *
65009166 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
65009205 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
65009246 TCCGGGCTAAG-CCTGAAGGCATTTGCGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
65009286 T-CGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
65009324 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
65009351 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 16
0.78 0.11 0.10
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 79 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:65009372 original size:79 final size:79
Alignment explanation
Indices: 65009219--65009383 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
65009209 GGACTAAGAT
* * * **
65009219 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
65009284 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* *
65009298 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
65009361 TATA-TCCGGTTAAATT
63 TAAATTCCGGTTAAATC
65009377 CCGAAGG
1 CCGAAGG
65009384 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.68
80 21 0.29
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATTCCGGTTAAATC
Found at i:65011746 original size:68 final size:65
Alignment explanation
Indices: 65011533--65011739 Score: 192
Period size: 67 Copynumber: 3.1 Consensus size: 65
65011523 TATAGTTCGA
* * * *
65011533 CTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCGT
1 CTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACA-TATATTCTCGT
65011594 AG
64 AG
* * * * * *
65011596 CTCTATTGTCTACATGGTGTCCTTCACCA-AGAACCACACATGCGACCTAGATACATATA-TCCC
1 CTCTCTTGTCTACATGGTG---TACA-CATAGTACCACCCATGCGACCTAGCTACATATATTCTC
65011659 GTAG
62 GTAG
*
65011663 CTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTCG
1 CTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTCG
65011728 TAG
63 TAG
65011731 CTCTCTTGT
1 CTCTCTTGT
65011740 ACACATGATG
Statistics
Matches: 115, Mismatches: 17, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 26 0.23
65 2 0.02
66 21 0.18
67 29 0.25
68 18 0.16
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (65 bp):
CTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATTCTCGTAG
Found at i:65024906 original size:21 final size:22
Alignment explanation
Indices: 65024882--65024922 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
65024872 TATAGTGAAT
*
65024882 TTCTTTTA-ATAAACTTAAAGA
1 TTCTTGTAGATAAACTTAAAGA
*
65024903 TTCTTGTAGCTAAACTTAAA
1 TTCTTGTAGATAAACTTAAA
65024923 AAGAATTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.41
Consensus pattern (22 bp):
TTCTTGTAGATAAACTTAAAGA
Found at i:65027718 original size:30 final size:30
Alignment explanation
Indices: 65027682--65027754 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 30
65027672 TGGTTGTCCC
*
65027682 AACCCTTTTCATAGCTCGATAGATGAAGCT
1 AACCCTTTTCATAGCTCGATAGACGAAGCT
* * * *
65027712 AACCCTTTTTCACAGTTTGATAGCCGAAGCT
1 AACCC-TTTTCATAGCTCGATAGACGAAGCT
*
65027743 ATCCCTTTTCAT
1 AACCCTTTTCAT
65027755 TATTTGATAG
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
30 11 0.31
31 24 0.69
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (30 bp):
AACCCTTTTCATAGCTCGATAGACGAAGCT
Found at i:65027761 original size:30 final size:29
Alignment explanation
Indices: 65027684--65027904 Score: 158
Period size: 30 Copynumber: 7.3 Consensus size: 29
65027674 GTTGTCCCAA
** * * *
65027684 CCCTTTTCATAGCTCGATAGATGAAGCTAA
1 CCCTTTTCATAATTTGATAG-TCAAGCTAT
* * *
65027714 CCCTTTTTCACAGTTTGATAGCCGAAGCTAT
1 CCC-TTTTCATAATTTGATAGTC-AAGCTAT
* *
65027745 CCCTTTTCATTATTTGATAGTCATCA-CCAT
1 CCCTTTTCATAATTTGATAGTCA--AGCTAT
65027775 CCCTTTTCATAATTTGATAGTCAAAGCTAT
1 CCCTTTTCATAATTTGATAGTC-AAGCTAT
* * *
65027805 CCCATTTCACAATTTGATAGCCAAAGCTAT
1 CCCTTTTCATAATTTGATAGTC-AAGCTAT
* ** * *
65027835 CCGTTTTCATTGTTCGATGGTCATCA-CTAT
1 CCCTTTTCATAATTTGATAGTCA--AGCTAT
* *
65027865 CCCTTTTCATAATTTAATAGTCGAGGCTAT
1 CCCTTTTCATAATTTGATAGTC-AAGCTAT
65027895 CCCTTTTCAT
1 CCCTTTTCAT
65027905 TAGCCGATGA
Statistics
Matches: 150, Mismatches: 31, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
29 3 0.02
30 120 0.80
31 27 0.18
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.38
Consensus pattern (29 bp):
CCCTTTTCATAATTTGATAGTCAAGCTAT
Found at i:65027842 original size:90 final size:90
Alignment explanation
Indices: 65027719--65027903 Score: 271
Period size: 90 Copynumber: 2.1 Consensus size: 90
65027709 GCTAACCCTT
* * *
65027719 TTTCACAGTTTGATAGCCGAAGCTATCCCTTTTCATTATTTGATAGTCATCACCATCCCTTTTCA
1 TTTCACAATTTGATAGCCAAAGCTATCCCTTTTCATTATTCGATAGTCATCACCATCCCTTTTCA
*
65027784 TAATTTGATAGTCAAAGCTATCCCA
66 TAATTTAATAGTCAAAGCTATCCCA
* * * *
65027809 TTTCACAATTTGATAGCCAAAGCTATCCGTTTTCATTGTTCGATGGTCATCACTATCCCTTTTCA
1 TTTCACAATTTGATAGCCAAAGCTATCCCTTTTCATTATTCGATAGTCATCACCATCCCTTTTCA
* * *
65027874 TAATTTAATAGTCGAGGCTATCCCT
66 TAATTTAATAGTCAAAGCTATCCCA
65027899 TTTCA
1 TTTCA
65027904 TTAGCCGATG
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (90 bp):
TTTCACAATTTGATAGCCAAAGCTATCCCTTTTCATTATTCGATAGTCATCACCATCCCTTTTCA
TAATTTAATAGTCAAAGCTATCCCA
Found at i:65030175 original size:43 final size:43
Alignment explanation
Indices: 65030035--65030178 Score: 150
Period size: 43 Copynumber: 3.3 Consensus size: 43
65030025 ATAAAGATGA
* * * * *
65030035 GATTATATGTAAGACCATGTCTGGGATATTGGCATTG-TAGTGA
1 GATTACATGTAAGACCATGTCTGGGACACTGGCATCGATA-TGT
*
65030078 GATTACGTGTAAGACCATGTCTGGGACACTGGCATC-ATTAAT-T
1 GATTACATGTAAGACCATGTCTGGGACACTGGCATCGA-T-ATGT
* * *
65030121 GATTACGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGT
1 GATTACATGTAAGACCATGTCTGGGACACTGGCATCGATATGT
*
65030164 GATAACATGTAAGAC
1 GATTACATGTAAGAC
65030179 TATATCTAGG
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
42 2 0.02
43 80 0.93
44 3 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACACTGGCATCGATATGT
Found at i:65034187 original size:30 final size:30
Alignment explanation
Indices: 65034136--65034192 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
65034126 GGTCTGTAAC
* *
65034136 ACGGACGTGTCTGGTAGCCGTGTGAGGTAT
1 ACGGACGTGTCCGGTAACCGTGTGAGGTAT
*
65034166 ACGGGCGTGTCCGGTAACCGTGTGAGG
1 ACGGACGTGTCCGGTAACCGTGTGAGG
65034193 CACACGGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.16, C:0.19, G:0.42, T:0.23
Consensus pattern (30 bp):
ACGGACGTGTCCGGTAACCGTGTGAGGTAT
Found at i:65038830 original size:37 final size:37
Alignment explanation
Indices: 65038780--65038858 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
65038770 TTATTACGAA
* * *
65038780 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
65038817 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
65038854 GTCTT
1 GTCTT
65038859 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:65039151 original size:49 final size:49
Alignment explanation
Indices: 65038979--65039408 Score: 691
Period size: 49 Copynumber: 9.0 Consensus size: 49
65038969 CTTCGGGACT
* * *
65038979 TATCACAT-T-TATACACTTTCACATCCATCACATCGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
65039026 TGTCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
65039073 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
65039120 TATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
65039169 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
65039218 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
65039267 TATCAC--GTATATACACTTTCACATTTATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
65039314 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
65039363 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
65039409 TTACTATCAT
Statistics
Matches: 361, Mismatches: 14, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
45 6 0.02
47 164 0.45
48 1 0.00
49 190 0.53
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:65039411 original size:96 final size:96
Alignment explanation
Indices: 65038977--65039408 Score: 742
Period size: 96 Copynumber: 4.5 Consensus size: 96
65038967 CCCTTCGGGA
* * * * *
65038977 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTCGGCCCTGTCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
65039040 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
65039071 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
*
65039136 ACTTTCACATTCATCACATCAGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
65039167 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
65039232 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
65039265 CTTATCACGTATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
65039330 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
65039361 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
65039409 TTACTATCAT
Statistics
Matches: 320, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 58 0.18
96 168 0.52
98 94 0.29
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65044964 original size:30 final size:30
Alignment explanation
Indices: 65044928--65044994 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
65044918 GTTGTCCCAA
*
65044928 CCCTTTTCATAGCTCAATAGCCCAAGCTAT
1 CCCTTTTCACAGCTCAATAGCCCAAGCTAT
* * **
65044958 CCCTTTTCACAGGTTAATAGCTGAAGCTAT
1 CCCTTTTCACAGCTCAATAGCCCAAGCTAT
65044988 CCTCTTT
1 CC-CTTT
65044995 CATTATTTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
30 27 0.87
31 4 0.13
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.34
Consensus pattern (30 bp):
CCCTTTTCACAGCTCAATAGCCCAAGCTAT
Found at i:65045020 original size:30 final size:30
Alignment explanation
Indices: 65044986--65045064 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 30
65044976 AGCTGAAGCT
65044986 ATCCTCTTTCATTATTTGATGGTCGTCACC
1 ATCCTCTTTCATTATTTGATGGTCGTCACC
* *
65045016 ATCCTTTTTCATT-GTTGATGGTCGTCACC
1 ATCCTCTTTCATTATTTGATGGTCGTCACC
*
65045045 ATCC-CTTTTCATAATTTGAT
1 ATCCTC-TTTCATTATTTGAT
65045065 AGCTGAAACT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 25 0.60
30 17 0.40
ACGTcount: A:0.18, C:0.24, G:0.13, T:0.46
Consensus pattern (30 bp):
ATCCTCTTTCATTATTTGATGGTCGTCACC
Found at i:65045156 original size:29 final size:29
Alignment explanation
Indices: 65044992--65045175 Score: 111
Period size: 30 Copynumber: 6.2 Consensus size: 29
65044982 AGCTATCCTC
* *
65044992 TTTCATTATTTGATGGTCGTCACCATCCTT
1 TTTCATTA-TTGATGGTCATCACCATCCCT
* *
65045022 TTTCATTGTTGATGGTCGTCACCATCCCT
1 TTTCATTATTGATGGTCATCACCATCCCT
* * * * *
65045051 TTTCATAATTTGATAGCTGA-AACTATCCCT
1 TTTCATTA-TTGAT-GGTCATCACCATCCCT
** * * * *
65045081 TTTCACAATTGGATAGCCA-AAGCTATCCCT
1 TTTCATTATT-GATGGTCATCA-CCATCCCT
** * *
65045111 TTTTGTTGTTCAATGGTCATCACCATCCCT
1 TTTCATTATT-GATGGTCATCACCATCCCT
* *
65045141 TTTCATTATTGATGGTCGTCACCATCACT
1 TTTCATTATTGATGGTCATCACCATCCCT
65045170 TTTCAT
1 TTTCAT
65045176 AATTTGATAG
Statistics
Matches: 118, Mismatches: 31, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
29 53 0.45
30 62 0.53
31 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.41
Consensus pattern (29 bp):
TTTCATTATTGATGGTCATCACCATCCCT
Found at i:65045198 original size:89 final size:90
Alignment explanation
Indices: 65045033--65045202 Score: 209
Period size: 89 Copynumber: 1.9 Consensus size: 90
65045023 TTCATTGTTG
* * *
65045033 ATGGTCGTCACCATCCCTTTTCATAATTTGATAGCTGAAACTATCCCTTTTCACAATTGGATAGC
1 ATGGTCATCACCATCCCTTTTCATAATTTGATAGCTGAAACCATCACTTTTCACAATTGGATAGC
65045098 CAAAGCTATCCCTTTTTGTTGTTCA
66 CAAAGCTATCCCTTTTTGTTGTTCA
* * ** * *
65045123 ATGGTCATCACCATCCCTTTTCATTA-TTGAT-GGTCGTCACCATCACTTTTCATAATTTGATAG
1 ATGGTCATCACCATCCCTTTTCATAATTTGATAGCT-GAAACCATCACTTTTCACAATTGGATAG
* * *
65045186 TCGAGGCTATCCCTTTT
65 CCAAAGCTATCCCTTTT
65045203 CATTATTTTG
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
88 2 0.03
89 41 0.61
90 24 0.36
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.39
Consensus pattern (90 bp):
ATGGTCATCACCATCCCTTTTCATAATTTGATAGCTGAAACCATCACTTTTCACAATTGGATAGC
CAAAGCTATCCCTTTTTGTTGTTCA
Found at i:65047609 original size:78 final size:81
Alignment explanation
Indices: 65047475--65047657 Score: 223
Period size: 78 Copynumber: 2.3 Consensus size: 81
65047465 TGAATGATGT
* *
65047475 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
*
65047539 GTGCGAGATACTA-AT
66 GTGCGAGATACTATAA
* * * * **
65047554 TCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAAT
*
65047616 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
65047633 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
65047658 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 48 0.55
79 25 0.28
80 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATAA
Found at i:65047619 original size:40 final size:40
Alignment explanation
Indices: 65047474--65047657 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
65047464 TTGAATGATG
* * * *
65047474 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
65047514 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
65047553 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
65047592 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
65047633 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65047658 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 23 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:65047675 original size:80 final size:77
Alignment explanation
Indices: 65047527--65047690 Score: 195
Period size: 79 Copynumber: 2.1 Consensus size: 77
65047517 GGACTAAGAT
* ** **
65047527 CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCAATTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
65047592 TCCGGGTTAAGTC
66 TCC-GGTTAAATC
* *
65047605 CCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCAATTGTGCGAGATACTA-AACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
65047669 ATATCCGGTTAAATT
63 AAATCCGGTTAAATC
65047684 CCGAAGG
1 CCGAAGG
65047691 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
78 23 0.32
79 25 0.34
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCAATTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGTTAAATC
Found at i:65055487 original size:39 final size:40
Alignment explanation
Indices: 65055383--65055567 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
65055373 TTGAATGATG
* * * *
65055383 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
65055423 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
65055463 TCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
65055502 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
65055541 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
65055568 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 35 0.29
40 79 0.65
41 8 0.07
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:65055519 original size:79 final size:81
Alignment explanation
Indices: 65055383--65055567 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
65055373 TTGAATGATG
*
65055383 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
65055447 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
65055462 TTCCGGGCTAAG-CCCAAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
65055524 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
65055542 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65055568 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:65055589 original size:79 final size:79
Alignment explanation
Indices: 65055436--65055600 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
65055426 GGACTAAGAT
* * **
65055436 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
*
65055501 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
65055515 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACGAGTTA-C
* *
65055578 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
65055594 CCGAAGG
1 CCGAAGG
65055601 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:65069363 original size:40 final size:40
Alignment explanation
Indices: 65069280--65069481 Score: 299
Period size: 40 Copynumber: 5.2 Consensus size: 40
65069270 GGACTAAGAT
*
65069280 CCGAAGGCATTTGTGCTAGTGACTATAT-CGGGCTAAGTC
1 CCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTC
65069319 CCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTC
*
65069359 CCGAAGGCATTTGTGCTA--G-TTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTC
* *
65069396 CCGAAGGCTTTTGTGCTATTGACTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTC
* *
65069436 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTA-TTGACTATATCCGGGCTAAGTC
65069475 CCGAAGG
1 CCGAAGG
65069482 TACTTGGGTT
Statistics
Matches: 149, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
37 34 0.23
38 1 0.01
39 42 0.28
40 69 0.46
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTC
Found at i:65069410 original size:77 final size:78
Alignment explanation
Indices: 65069268--65069481 Score: 317
Period size: 77 Copynumber: 2.7 Consensus size: 78
65069258 CGGATGATAA
* *
65069268 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGACTATAT-CGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT--CTATATCCGGGCTAAGTCCCGAAGGCATTTG
65069332 TGCTATTGACTATAT
64 TGCTATTGACTATAT
* *
65069347 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-TATATCCGGGCTAAGTCCCGAAGGCTTTTGTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTCTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
65069411 CTATTGACTATAT
66 CTATTGACTATAT
* *
65069424 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-T-CTATATCCGGGCTAAGTCCCGAAGG
65069482 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
76 5 0.04
77 67 0.54
78 1 0.01
79 44 0.35
80 7 0.06
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (78 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTCTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CTATTGACTATAT
Found at i:65077388 original size:40 final size:40
Alignment explanation
Indices: 65077340--65077545 Score: 351
Period size: 40 Copynumber: 5.2 Consensus size: 40
65077330 GGACTAAGAT
*
65077340 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
65077380 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
65077420 CCGAAGGTATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
65077460 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
65077500 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
65077539 CCGAAGG
1 CCGAAGG
65077546 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 15 0.09
40 143 0.91
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:65081480 original size:17 final size:17
Alignment explanation
Indices: 65081457--65081496 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
65081447 GAAGAGAGTG
65081457 AAAAAGAAAA-AGAAAA
1 AAAAAGAAAACAGAAAA
*
65081473 AGAAAAGAAAACTGAAAA
1 A-AAAAGAAAACAGAAAA
65081491 AAAAAG
1 AAAAAG
65081497 GAAAGCAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 14 0.67
18 6 0.29
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (17 bp):
AAAAAGAAAACAGAAAA
Found at i:65085062 original size:39 final size:40
Alignment explanation
Indices: 65084962--65085184 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
65084952 TGAATGATGT
* * * *
65084962 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
65085002 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
65085042 CCGGGCTAAG-CCCGAAGGCATTGGTGAGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65085081 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
65085121 CCGGGCTAAGT-TCGAAGGCATTTGTGAGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65085160 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
65085185 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 68 0.43
40 83 0.52
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:65085191 original size:79 final size:79
Alignment explanation
Indices: 65085014--65085184 Score: 281
Period size: 79 Copynumber: 2.2 Consensus size: 79
65085004 GGACTAAGAT
* *
65085014 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGAGAGTTACTAT
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGTGAGAGTCACTAT
65085079 AACCGGGCTATGTC
66 AACCGGGCTATGTC
** *
65085093 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTTCGAAGGCATTTGTGAGAGTCACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAGCCCGAAGGCATTGGTGAGAGTCACTA
65085157 TAACCGGGCTATGTC
65 TAACCGGGCTATGTC
65085172 CCGAAGGCATTTG
1 CCGAAGGCATTTG
65085185 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
78 2 0.02
79 84 0.98
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGTGAGAGTCACTAT
AACCGGGCTATGTC
Found at i:65085216 original size:79 final size:80
Alignment explanation
Indices: 65085014--65085217 Score: 247
Period size: 79 Copynumber: 2.6 Consensus size: 80
65085004 GGACTAAGAT
** * ** *
65085014 CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCT-AAGCCCGAAGGCATTGGTGAGAGTTACT
1 CCGAAGGCATTTGAACGAGTTACTATA-ACCGGGCTAAATTCCGAAGGCATTGGTGAGAGTCACT
65085077 ATAACCGGGCTATGTC
65 ATAACCGGGCTATGTC
** * *
65085093 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTT-CGAAGGCATTTGTGAGAGTCACTA
1 CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAATTCCGAAGGCATTGGTGAGAGTCACTA
65085157 TAACCGGGCTATGTC
66 TAACCGGGCTATGTC
* *
65085172 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTATAACCGGGCTAAATTCCGAAGG
65085218 TACGTGATTT
Statistics
Matches: 110, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
78 9 0.08
79 99 0.90
80 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAATTCCGAAGGCATTGGTGAGAGTCACTA
TAACCGGGCTATGTC
Found at i:65093181 original size:40 final size:39
Alignment explanation
Indices: 65093137--65093239 Score: 118
Period size: 39 Copynumber: 2.6 Consensus size: 39
65093127 AGTGACCATA
* *
65093137 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
*
65093177 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTGGTGCGAGTTACTAAT
* * *
65093215 AACCGGGCTATGTCCCGAAGGCATT
1 -TCCGGACTAAG-CCCGAAGGCATT
65093240 TGAACGAGTA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.04
39 32 0.57
40 22 0.39
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTGGTGCGAGTTACTAAT
Found at i:65093198 original size:39 final size:40
Alignment explanation
Indices: 65093097--65093260 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
65093087 TTGAATGATG
* * *
65093097 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
65093137 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
*
65093176 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
65093216 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
65093256 TCCGG
1 TCCGG
65093261 TTAAATTCCG
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
39 36 0.34
40 61 0.58
41 8 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:65093260 original size:79 final size:80
Alignment explanation
Indices: 65093097--65093248 Score: 184
Period size: 79 Copynumber: 1.9 Consensus size: 80
65093087 TTGAATGATG
* *
65093097 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
65093162 GTGCGAGTTACTAAT
66 GAACGAGTTACTAAT
* * * * *
65093177 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
65093239 TTGAACGAGT
64 TTGAACGAGT
65093249 AGCTATATCC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.02
79 43 0.70
80 17 0.28
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAT
Found at i:65096031 original size:38 final size:40
Alignment explanation
Indices: 65095988--65096079 Score: 136
Period size: 38 Copynumber: 2.4 Consensus size: 40
65095978 AGTTTAAGTC
* *
65095988 TTTAATTATATCATAAAT-TGAACATCATTAATATGAG-T
1 TTTAATTATGTCATAAATCTGAACATCATTAATAAGAGTT
*
65096026 TTTAATTATGTCAT-AATCTGAACATCATTAGTAAGAGTT
1 TTTAATTATGTCATAAATCTGAACATCATTAATAAGAGTT
65096065 TTTAATTATGTCATA
1 TTTAATTATGTCATA
65096080 GTTTGGACAT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
37 3 0.06
38 30 0.62
39 15 0.31
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (40 bp):
TTTAATTATGTCATAAATCTGAACATCATTAATAAGAGTT
Found at i:65098756 original size:27 final size:27
Alignment explanation
Indices: 65098726--65098903 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65098716 ATATTGAGTC
* * * *
65098726 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
65098753 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65098780 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65098808 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65098835 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65098862 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65098889 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65098904 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65098865 original size:82 final size:81
Alignment explanation
Indices: 65098747--65098902 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65098737 TGCTATATAA
* *
65098747 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65098812 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65098829 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65098893 CACTTAGTGC
65 CACTTAGTGC
65098903 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65103254 original size:27 final size:27
Alignment explanation
Indices: 65103224--65103402 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
65103214 ATATTGAGCC
* * * *
65103224 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAGTCATAT
* * *
65103251 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCATAT
*
65103278 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCATA-T
** *
65103306 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAGTCATA-T
* *
65103333 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCATAT
*
65103360 CGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTACATAGTCATAT
65103387 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
65103403 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCATAT
Found at i:65103363 original size:82 final size:81
Alignment explanation
Indices: 65103250--65103400 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
65103240 TATAATCATC
* *
65103250 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
65103315 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
65103332 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
65103396 AGTGC
65 AGTGC
65103401 TATACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:65103970 original size:13 final size:13
Alignment explanation
Indices: 65103952--65103976 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65103942 TACTAAATTT
65103952 TCATGGATTCAAG
1 TCATGGATTCAAG
65103965 TCATGGATTCAA
1 TCATGGATTCAA
65103977 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:65107647 original size:22 final size:22
Alignment explanation
Indices: 65107619--65107664 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
65107609 GGTTCATGAG
65107619 TTGAACCAAAAATGT-TGTTGGT
1 TTGAACCAAAAAT-TATGTTGGT
65107641 TTGAACCAAAAATTATGTTGGT
1 TTGAACCAAAAATTATGTTGGT
65107663 TT
1 TT
65107665 TGGATGTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (22 bp):
TTGAACCAAAAATTATGTTGGT
Found at i:65124499 original size:40 final size:40
Alignment explanation
Indices: 65124443--65124619 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
65124433 GGATGATAAT
*
65124443 CGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
65124483 CGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
65124523 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * * *
65124563 TGGGCTAAGTCCCGAAGGCATTTGAGCG-GGTAGCTATGTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
*
65124603 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
65124620 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 18 0.14
40 107 0.86
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:65128453 original size:13 final size:13
Alignment explanation
Indices: 65128435--65128459 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65128425 ATTTCATGTC
65128435 AAACTATTGTAAG
1 AAACTATTGTAAG
65128448 AAACTATTGTAA
1 AAACTATTGTAA
65128460 TACTTATGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (13 bp):
AAACTATTGTAAG
Found at i:65128766 original size:50 final size:52
Alignment explanation
Indices: 65128712--65128820 Score: 143
Period size: 50 Copynumber: 2.1 Consensus size: 52
65128702 AATAAAGTAA
**
65128712 TGCATTATGTAACTTTCATGTTAG-TTAAGTATGCATCA-TAAA-TAATGACT
1 TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAA-GACT
* * *
65128762 TGCATTATGTAACTCCCATGTTAGTTTAAGTCTGCATTATTAAATTAAGTCT
1 TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAAGACT
65128814 TGCATTA
1 TGCATTA
65128821 AATAACTCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
50 22 0.43
51 12 0.24
52 14 0.27
53 3 0.06
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (52 bp):
TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAAGACT
Found at i:65128827 original size:52 final size:50
Alignment explanation
Indices: 65128728--65128828 Score: 123
Period size: 52 Copynumber: 2.0 Consensus size: 50
65128718 ATGTAACTTT
**
65128728 CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTATGTAACTCC
1 CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTAAATAACTCC
* * *
65128778 CATGTTAGTTTAAGTCTGCATTATTAAATTAA-GTCTTGCATTAAATAACTC
1 CATGTTAG-TTAAGTATGCATCA-TAAA-TAATGACTTGCATTAAATAACTC
65128829 ATATGTTTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
50 8 0.19
51 12 0.28
52 20 0.47
53 3 0.07
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39
Consensus pattern (50 bp):
CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTAAATAACTCC
Found at i:65129094 original size:24 final size:24
Alignment explanation
Indices: 65129067--65129112 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
65129057 AGTGATTTTT
*
65129067 GGTTACATACAAGGGGGACATTTC
1 GGTTACATACAAGGGAGACATTTC
65129091 GGTTACATACAAGGGAGACATT
1 GGTTACATACAAGGGAGACATT
65129113 ATACATCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (24 bp):
GGTTACATACAAGGGAGACATTTC
Found at i:65131335 original size:22 final size:22
Alignment explanation
Indices: 65131278--65131338 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
65131268 TTCTTCTTGT
* *
65131278 AATGAAAGAAAATGAGAAAAAGA
1 AATGGAAGAAAA-GAAAAAAAGA
* *
65131301 AATTG-AGAGAAGAAAAAAAGA
1 AATGGAAGAAAAGAAAAAAAGA
*
65131322 CATGGAAGAAAAGAAAA
1 AATGGAAGAAAAGAAAA
65131339 GGAAATAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
21 12 0.40
22 15 0.50
23 3 0.10
ACGTcount: A:0.67, C:0.02, G:0.23, T:0.08
Consensus pattern (22 bp):
AATGGAAGAAAAGAAAAAAAGA
Found at i:65131429 original size:18 final size:19
Alignment explanation
Indices: 65131405--65131456 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
65131395 AATCATGTGT
65131405 GAAAGAAAAGAAAGTTGAA
1 GAAAGAAAAGAAAGTTGAA
*
65131424 -AAAGAAAA-AGAGATTGAA
1 GAAAGAAAAGAAAG-TTGAA
65131442 GAAAGAAAAGAAAGT
1 GAAAGAAAAGAAAGT
65131457 GTCTAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 3 0.11
18 13 0.46
19 9 0.32
20 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.25, T:0.10
Consensus pattern (19 bp):
GAAAGAAAAGAAAGTTGAA
Found at i:65133201 original size:15 final size:16
Alignment explanation
Indices: 65133181--65133210 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
65133171 TGAGGACTTT
65133181 TTTTATTT-AATTAAG
1 TTTTATTTAAATTAAG
65133196 TTTTATTTAAATTAA
1 TTTTATTTAAATTAA
65133211 TAAGTTTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (16 bp):
TTTTATTTAAATTAAG
Found at i:65133385 original size:52 final size:50
Alignment explanation
Indices: 65133286--65133387 Score: 125
Period size: 52 Copynumber: 2.0 Consensus size: 50
65133276 ATGTAACTTT
**
65133286 CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTATGTAACTCG
1 CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTAAATAACTCG
* * *
65133336 CATGTTAGTTTAAGTATGCATTATTTAATTAA-GTCTTGCATTAAATAACTCG
1 CATGTTAG-TTAAGTATGCATCA--TAAATAATGACTTGCATTAAATAACTCG
65133388 TCTGTTTATT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
50 8 0.18
51 13 0.30
52 17 0.39
53 6 0.14
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (50 bp):
CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTAAATAACTCG
Found at i:65133695 original size:15 final size:15
Alignment explanation
Indices: 65133663--65133691 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
65133653 ATTTTCTATG
65133663 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
65133678 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
65133692 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:65137154 original size:24 final size:24
Alignment explanation
Indices: 65137127--65137176 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
65137117 TTCAAGTGAT
*
65137127 TTTCGGTTACATACAAGGGGGACA
1 TTTCGGTTACATACAAGGGAGACA
*
65137151 TTTCGGTTACATATAAGGGAGACA
1 TTTCGGTTACATACAAGGGAGACA
65137175 TT
1 TT
65137177 ATACATCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (24 bp):
TTTCGGTTACATACAAGGGAGACA
Found at i:65138363 original size:25 final size:23
Alignment explanation
Indices: 65138319--65138367 Score: 55
Period size: 24 Copynumber: 2.0 Consensus size: 23
65138309 ATAGTATACA
65138319 TTTAAATAAATACATCAATTTATT
1 TTTAAATAAATACATCAA-TTATT
*
65138343 TTTATAATAAATTA-ATTAATTATT
1 TTTA-AATAAA-TACATCAATTATT
65138367 T
1 T
65138368 GTGTACGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 10 0.45
25 10 0.45
26 2 0.09
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (23 bp):
TTTAAATAAATACATCAATTATT
Found at i:65140222 original size:25 final size:25
Alignment explanation
Indices: 65140188--65140263 Score: 134
Period size: 25 Copynumber: 3.0 Consensus size: 25
65140178 AGGGGATAAA
65140188 GGAGAAGATTTAGGAGCTGATAAGG
1 GGAGAAGATTTAGGAGCTGATAAGG
65140213 GGAGAAGATTTAGGAGCTGATAAGG
1 GGAGAAGATTTAGGAGCTGATAAGG
*
65140238 GGAGAAGATTTAGGAGTTGATCAAGG
1 GGAGAAGATTTAGGAGCTGAT-AAGG
65140264 AGCAAGAGTT
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 45 0.92
26 4 0.08
ACGTcount: A:0.36, C:0.04, G:0.39, T:0.21
Consensus pattern (25 bp):
GGAGAAGATTTAGGAGCTGATAAGG
Found at i:65141231 original size:8 final size:8
Alignment explanation
Indices: 65141218--65141265 Score: 71
Period size: 8 Copynumber: 6.0 Consensus size: 8
65141208 CTAAATCGGC
65141218 AAAAGCCG
1 AAAAGCCG
65141226 AAAAGCCG
1 AAAAGCCG
*
65141234 AAATGCCG
1 AAAAGCCG
65141242 AAAAGCCG
1 AAAAGCCG
65141250 AAATA-CCG
1 AAA-AGCCG
65141258 AAAAGCCG
1 AAAAGCCG
65141266 GTATTTTGAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
7 1 0.03
8 34 0.94
9 1 0.03
ACGTcount: A:0.48, C:0.25, G:0.23, T:0.04
Consensus pattern (8 bp):
AAAAGCCG
Found at i:65141243 original size:16 final size:16
Alignment explanation
Indices: 65141222--65141265 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
65141212 ATCGGCAAAA
65141222 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
65141238 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
*
65141254 ACCGAAAAGCCG
1 GCCGAAAAGCCG
65141266 GTATTTTGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.43, C:0.27, G:0.25, T:0.05
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:65141721 original size:27 final size:27
Alignment explanation
Indices: 65141681--65141792 Score: 154
Period size: 27 Copynumber: 4.2 Consensus size: 27
65141671 AGGAAGCGTC
* *
65141681 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
65141708 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
65141735 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* **
65141762 CTGGTGACTCTTTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
65141788 CTGGT
1 CTGGT
65141793 AGCCATGCTG
Statistics
Matches: 77, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 14 0.18
27 63 0.82
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:65145297 original size:12 final size:12
Alignment explanation
Indices: 65145280--65145306 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
65145270 ATTCCGAAGT
65145280 ATATATATATAC
1 ATATATATATAC
65145292 ATATATATATAC
1 ATATATATATAC
65145304 ATA
1 ATA
65145307 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:65145816 original size:27 final size:27
Alignment explanation
Indices: 65145787--65145963 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
65145777 AAATTGTACT
*
65145787 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTA
** *
65145814 GCACTAAGTGTGCGAAATGAATATG-A
1 GCACTAAGTGTGCGATTTGACTATGTA
* * **
65145840 TGCACTAAGTGTGCGAATTGACCATGCG
1 -GCACTAAGTGTGCGATTTGACTATGTA
65145868 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTA
* *
65145896 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGATTTGACTATGTA
* * *
65145923 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTA
*
65145950 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
65145964 GACTCAATAT
Statistics
Matches: 129, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTA
Found at i:65145900 original size:82 final size:81
Alignment explanation
Indices: 65145787--65145942 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65145777 AAATTGTACT
* *
65145787 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
65145851 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
65145868 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
65145933 TGCGAGTTGA
65 TGCGAATTGA
65145943 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:65145954 original size:82 final size:81
Alignment explanation
Indices: 65145787--65145963 Score: 221
Period size: 82 Copynumber: 2.2 Consensus size: 81
65145777 AAATTGTACT
* *
65145787 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
* *
65145852 GCGAATTGACCATGCG
66 GCGAATTGACCATACA
** *
65145868 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** *
65145932 GTGCGAGTTGATTATATA
64 GTGCGAATTGACCATACA
*
65145950 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
65145964 GACTCAATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 16 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACA
Found at i:65151251 original size:40 final size:40
Alignment explanation
Indices: 65151177--65151397 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
65151167 AACCCAAGTA
* * *
65151177 CCTTCGGGATTTAG-CCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
65151216 CCTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATG
* *
65151256 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
65151296 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
65151336 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
65151375 CCCTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
65151398 CATCCGAATA
Statistics
Matches: 160, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 3 0.02
39 32 0.20
40 121 0.76
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:65159674 original size:40 final size:40
Alignment explanation
Indices: 65159600--65159820 Score: 277
Period size: 40 Copynumber: 5.6 Consensus size: 40
65159590 AACCCAAGTA
* * * *
65159600 CCTTCGGGATTTAG-CCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
65159639 CCTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
65159679 CCTTCGGGACTTAGCCCAGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
65159719 CCTTCAGGACTTAGCCCGGATATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
65159759 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
65159798 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
65159821 CATCCGAATA
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
39 36 0.23
40 119 0.76
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Done.