Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 210 of 295
Found at i:67004073 original size:79 final size:80
Alignment explanation
Indices: 67003937--67004121 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
67003927 TTGAATGATG
* * *
67003937 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
67004002 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * * **
67004016 TTCCGGGCTAAG-CCCGAAGGTATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGG-ATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
67004078 ATTGTGCGAGTTACTATA
63 ATTGTGCGAGATACTATA
* *
67004096 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGG-ATTTG
67004122 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:67004143 original size:79 final size:79
Alignment explanation
Indices: 67003990--67004154 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
67003980 GGACTAAGAT
* * * **
67003990 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGTATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
67004055 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
67004069 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
67004132 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
67004148 CCGAAGG
1 CCGAAGG
67004155 TACGTGGTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:67023708 original size:50 final size:50
Alignment explanation
Indices: 67023590--67023831 Score: 229
Period size: 50 Copynumber: 4.8 Consensus size: 50
67023580 AGCCGAAGCT
* * * * * * *
67023590 ATCTGATACGCATAGTAGCCTACACTTGGTACTACACATGCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * * *
67023639 ATCTGGTAAATGTAGTAGCCTGCACGTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
67023689 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * * * *
67023740 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-C
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
67023789 AGTATGGTACACGTAGTAGCCTTCACTTAGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
67023832 TACTCACAAT
Statistics
Matches: 155, Mismatches: 33, Indels: 9
0.79 0.17 0.05
Matches are distributed among these distances:
49 37 0.24
50 78 0.50
51 40 0.26
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:67050170 original size:43 final size:42
Alignment explanation
Indices: 67050038--67050188 Score: 203
Period size: 42 Copynumber: 3.6 Consensus size: 42
67050028 CTGAAATTAT
* *
67050038 GTGTAAGACCATATCTGAGATATGACATCGATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
67050080 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
* * * * *
67050122 GTGTAAGACCATAGCTGGGCTATTGGCATCGATACGGGATTTC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGACTTC
* * *
67050165 ATGTAAGACCATATTTGAGATATG
1 GTGTAAGACCATATCTGGGATATG
67050189 TCATTGGTAT
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 62 0.65
43 34 0.35
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
Found at i:67055001 original size:62 final size:62
Alignment explanation
Indices: 67054935--67055105 Score: 297
Period size: 62 Copynumber: 2.8 Consensus size: 62
67054925 TTTAACGGTT
*
67054935 ACTGGGTCGAAGCCTTTTCATAAATCATATTACTGGGCCAAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATTACTGGGCCAAAGCCTTATCATAAATCATATC
* * *
67054997 ACTGGGCCGAAGCCTTATCATAAATCATATCACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATTACTGGGCCAAAGCCTTATCATAAATCATATC
*
67055059 TCTGGGCCGAAGCCTTTTCATAAATCATATTACTGGGCCAAAGCCTT
1 ACTGGGCCGAAGCCTTTTCATAAATCATATTACTGGGCCAAAGCCTT
67055106 TACTGTAAAC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 101 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (62 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATTACTGGGCCAAAGCCTTATCATAAATCATATC
Found at i:67055106 original size:31 final size:31
Alignment explanation
Indices: 67054933--67055105 Score: 267
Period size: 31 Copynumber: 5.6 Consensus size: 31
67054923 CGTTTAACGG
* *
67054933 TTACTGGGTCGAAGCCTTTTCATAAATCATA
1 TTACTGGGCCGAAGCCTTATCATAAATCATA
*
67054964 TTACTGGGCCAAAGCCTTATCATAAATCATA
1 TTACTGGGCCGAAGCCTTATCATAAATCATA
*
67054995 TCACTGGGCCGAAGCCTTATCATAAATCATA
1 TTACTGGGCCGAAGCCTTATCATAAATCATA
*
67055026 TCACTGGGCCGAAGCCTTATCATAAATCATA
1 TTACTGGGCCGAAGCCTTATCATAAATCATA
*
67055057 TCT-CTGGGCCGAAGCCTTTTCATAAATCATA
1 T-TACTGGGCCGAAGCCTTATCATAAATCATA
*
67055088 TTACTGGGCCAAAGCCTT
1 TTACTGGGCCGAAGCCTT
67055106 TACTGTAAAC
Statistics
Matches: 132, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
30 1 0.01
31 131 0.99
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (31 bp):
TTACTGGGCCGAAGCCTTATCATAAATCATA
Found at i:67055381 original size:25 final size:24
Alignment explanation
Indices: 67055312--67055393 Score: 105
Period size: 24 Copynumber: 3.4 Consensus size: 24
67055302 CTAGAGGCCT
*
67055312 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
67055336 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
*
67055360 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTT-GATAAACTGGGGCA-A
67055386 A-CCCTTTT
1 AGCCCTTTT
67055394 AGCACTTCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
23 7 0.13
24 24 0.45
25 20 0.38
26 2 0.04
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:67055445 original size:16 final size:16
Alignment explanation
Indices: 67055424--67055454 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67055414 AACCCAACCC
*
67055424 ATGCAGCATGTCATGT
1 ATGCAGAATGTCATGT
67055440 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
67055455 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:67056302 original size:27 final size:27
Alignment explanation
Indices: 67056202--67056285 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
67056192 GGGCATATTC
* *
67056202 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGAT-TTACG
* *
67056229 GTCACTTTACCCTGCAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGATTTACG
67056256 GTCACTTTACCCTACAGGGGATTTACG
1 GTCACTTTACCCTACAGGGGATTTACG
67056283 GTC
1 GTC
67056286 TTTTTACCTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGATTTACG
Found at i:67056377 original size:27 final size:27
Alignment explanation
Indices: 67056324--67056656 Score: 208
Period size: 27 Copynumber: 12.3 Consensus size: 27
67056314 TTTCACCCTA
* * * * *
67056324 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
67056351 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
67056378 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-C
* *
67056407 CAAGGGTATTTCTA-TAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAC
* * * *
67056434 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
** ** * *
67056461 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
67056488 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTAGTAATTTTATAAAC
* * * *
67056515 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
67056542 CAGGGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
67056568 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAC
* *
67056595 CAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
67056622 CAAGGGAATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
67056649 CGAGGGTA
1 CAAGGGTA
67056657 AAACAGTAAT
Statistics
Matches: 249, Mismatches: 48, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
26 23 0.09
27 194 0.78
28 16 0.06
29 16 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAC
Found at i:67056527 original size:81 final size:80
Alignment explanation
Indices: 67056421--67056615 Score: 241
Period size: 81 Copynumber: 2.4 Consensus size: 80
67056411 GGTATTTCTA
** ** * *
67056421 TAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACA
1 TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTCAGCAATTTCACA
67056485 AACCAGTGGTATTTTGG
65 AACCAG-GGTATTTTGG
* *
67056502 TAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACA
1 TAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTCAGCAATTTCACA
*
67056566 AACTAGGGTATTTTGG
65 AACCAGGGTATTTTGG
** *
67056582 TAATTTTACTGATCAAGGGTATTTTGGTAATTTT
1 TAATTTTACAAATCAGGGGTATTTTGGTAATTTT
67056616 GTAAACCAAG
Statistics
Matches: 99, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
80 40 0.40
81 58 0.59
82 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (80 bp):
TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTCAGCAATTTCACAA
ACCAGGGTATTTTGG
Found at i:67056622 original size:80 final size:80
Alignment explanation
Indices: 67056431--67056642 Score: 257
Period size: 80 Copynumber: 2.6 Consensus size: 80
67056421 TAATTTTGTA
** ** *
67056431 AATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAGTGGT
1 AATCAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAACCAGTGGT
67056495 ATTTTGGTAATTTTAC
65 ATTTTGGTAATTTTAC
* * *
67056511 AAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACAAACTAG-GGT
1 AATC-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGTGGT
67056575 ATTTTGGTAATTTTAC
65 ATTTTGGTAATTTTAC
* * ** * *
67056591 TGATCAAGGGTATTTTGGTAATTTTGTAAACCAAGGGAATTTTAGTAATTTT
1 -AATCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTT
67056643 GTAAATCGAG
Statistics
Matches: 113, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
80 63 0.56
81 49 0.43
82 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (80 bp):
AATCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGTGGTA
TTTTGGTAATTTTAC
Found at i:67056655 original size:54 final size:54
Alignment explanation
Indices: 67056324--67056656 Score: 253
Period size: 54 Copynumber: 6.1 Consensus size: 54
67056314 TTTCACCCTA
* * * * *
67056324 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAAT
* * * *
67056378 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTA-TAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTT-TAGTAATTTTGTAAAT
* *** ** ***
67056434 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAAT
* * * * ** *
67056487 CCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAAT
* * * * * * *
67056542 CAGGGGTATTTTAGCAATTTTACAAA-CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT-GTAAAT
** *
67056595 CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGAATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAAT
*
67056649 CGAGGGTA
1 CAAGGGTA
67056657 AAACAGTAAT
Statistics
Matches: 219, Mismatches: 49, Indels: 22
0.76 0.17 0.08
Matches are distributed among these distances:
53 43 0.20
54 122 0.56
55 18 0.08
56 35 0.16
57 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAAT
Found at i:67056664 original size:27 final size:27
Alignment explanation
Indices: 67056634--67056764 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
67056624 AGGGAATTTT
*
67056634 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67056661 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67056688 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
67056715 -GTTAATTTTTTAAATCGAGGATAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
67056742 GGTAATTATGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
67056765 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 87 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:67056666 original size:54 final size:53
Alignment explanation
Indices: 67056608--67056764 Score: 145
Period size: 54 Copynumber: 2.9 Consensus size: 53
67056598 GGGTATTTTG
** * *
67056608 GTAATTTTGTAAACCAAGGG-AATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GTAATTTTGTAAACCAAGGGTAA-AATAGTAATTCTATAAATCGAGGGTAAAAC
* *
67056661 AGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
1 -GTAATTTTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
* * * * ** * * *
67056715 GTTAATTTTTTAAATCGAGGATAAAACGGTAATTATGTAAATCGGGGGTA
1 G-TAATTTTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
67056765 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 83 0.97
55 2 0.02
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (53 bp):
GTAATTTTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
Found at i:67059107 original size:31 final size:31
Alignment explanation
Indices: 67059065--67059205 Score: 237
Period size: 31 Copynumber: 4.5 Consensus size: 31
67059055 TTTAACAGTT
*
67059065 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
67059096 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
**
67059127 ACTGGGCCGAAGCCTTACCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
67059158 TCTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
67059189 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
67059206 ACTGTAAAGG
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 103 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:67059479 original size:25 final size:24
Alignment explanation
Indices: 67059410--67059491 Score: 105
Period size: 24 Copynumber: 3.4 Consensus size: 24
67059400 CTAGAGGCCT
*
67059410 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
67059434 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
*
67059458 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTT-GATAAACTGGGGCA-A
67059484 A-CCCTTTT
1 AGCCCTTTT
67059492 AGCACTTCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
23 7 0.13
24 24 0.45
25 20 0.38
26 2 0.04
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:67059543 original size:16 final size:16
Alignment explanation
Indices: 67059522--67059552 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67059512 AACCCAACCC
*
67059522 ATGCAGCATGTCATGT
1 ATGCAGAATGTCATGT
67059538 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
67059553 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:67060400 original size:27 final size:27
Alignment explanation
Indices: 67060300--67060383 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
67060290 GGGCATATTT
* *
67060300 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGAT-TTACG
* *
67060327 GTCACTTTACCCTGCAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGATTTACG
67060354 GTCACTTTACCCTACAGGGGATTTACG
1 GTCACTTTACCCTACAGGGGATTTACG
67060381 GTC
1 GTC
67060384 TTTTTACCTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGATTTACG
Found at i:67060475 original size:27 final size:27
Alignment explanation
Indices: 67060422--67060832 Score: 240
Period size: 27 Copynumber: 15.2 Consensus size: 27
67060412 TTTCACCCTA
* * * * * *
67060422 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
67060449 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
67060476 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
*
67060505 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* *
67060532 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** ** * *
67060559 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
67060585 CCAGTGGTATTTTGGTAATTTTATAAA-
1 CAAG-GGTATTTTAGTAATTTTATAAAT
* * * *
67060612 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTAGTAATTTTATAAAT
* * *
67060640 CAGGGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
** * *
67060666 CTGGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAT
* * *
67060693 CAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
67060720 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* **** * *
67060747 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
***
67060774 CAAGGGTAAAATAGTAATTTTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* **** *
67060801 CGAGGGTAAAACAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
67060828 CAAGG
1 CAAGG
67060833 ATAAAAGTTA
Statistics
Matches: 316, Mismatches: 57, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
26 24 0.08
27 260 0.82
28 17 0.05
29 15 0.05
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:67060720 original size:80 final size:80
Alignment explanation
Indices: 67060449--67060740 Score: 268
Period size: 80 Copynumber: 3.6 Consensus size: 80
67060439 ATCTACAAAC
** ** ** * * *
67060449 CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTA
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT-TAGTAA-TTTTACAAA-CCAGGGGTA
*
67060513 TTTCT-GTAATTTTGTAAAT
63 TTT-TGGTAATTTTAT-AAT
** ** * *
67060532 CAAGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAACCAGGGGTATT
*
67060596 TTGGTAATTTTATAAA
65 TTGGTAATTTTATAAT
* * *
67060612 CTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACAAA-CTGGGGTATT
1 C-AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATT
*
67060676 TTGGTAATTTTACTGAT
65 TTGGTAATTTTA-TAAT
** *
67060693 CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTT
67060741 GTAAATCGAG
Statistics
Matches: 170, Mismatches: 33, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
80 66 0.39
81 64 0.38
82 8 0.05
83 32 0.19
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
TGGTAATTTTATAAT
Found at i:67060753 original size:54 final size:54
Alignment explanation
Indices: 67060422--67060899 Score: 243
Period size: 54 Copynumber: 8.9 Consensus size: 54
67060412 TTTCACCCTA
* * * * * * *
67060422 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTGTAAAT
* * *
67060476 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-TCAAGGGTATTT-TAGTAATTTTGTAAAT
* ** ** ***
67060532 CAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTGTAAAT
* * * ** *
67060585 CCAGTGGTATTTTGGTAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAATC-AAGGGTATTTTAGTAATTTTGTAAAT
* * * * ** * * *
67060640 CAGGGGTATTTTAGCAATTTTACAAA-CTGGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTT-GTAAAT
* *
67060693 CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTGTAAAT
* ***** * * *** *
67060747 CGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTGTAAAT
* ***** * *** *
67060801 CGAGGGTAAAACAGTAATTTTGTAAATCAA-GG-ATAAAAGTTAATTATGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAG-TAATTTTGTAAAT
** * * * * *
67060854 CGGGGGTACTTTGGTAATTTTACAAGTCAAGGGTATTATAATAATT
1 CAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATT
67060900 GGTAAACTAA
Statistics
Matches: 335, Mismatches: 74, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
52 5 0.01
53 79 0.24
54 192 0.57
55 22 0.07
56 37 0.11
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTGTAAAT
Found at i:67060851 original size:26 final size:27
Alignment explanation
Indices: 67060706--67060854 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
67060696 GGGTATTTTG
* ****
67060706 GTAATTTTGTAAACCAAGGGTATTTTA
1 GTAATTTTGTAAATCAAGGGTAAAACA
*
67060733 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCAAGGGTAAAACA
* *
67060760 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTTTGTAAATCAAGGGTAAAACA
* *
67060787 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCAAGGGTAAAACA
*
67060814 GTAATTTTGTAAATCAAGGAT-AAA-A
1 GTAATTTTGTAAATCAAGGGTAAAACA
*
67060839 GTTAATTATGTAAATC
1 G-TAATTTTGTAAATC
67060855 GGGGGTACTT
Statistics
Matches: 104, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
25 2 0.02
26 16 0.15
27 86 0.83
ACGTcount: A:0.42, C:0.07, G:0.18, T:0.34
Consensus pattern (27 bp):
GTAATTTTGTAAATCAAGGGTAAAACA
Found at i:67060887 original size:80 final size:81
Alignment explanation
Indices: 67060732--67060888 Score: 183
Period size: 80 Copynumber: 2.0 Consensus size: 81
67060722 AGGGTATTTT
* * * *
67060732 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTTTAT
1 AGTAATTTTGTAAATCAAGGATAAAACAGTAATTATGTAAATCAAGGGTAAAATAGTAATTTTAC
*
67060797 AAATCGAGGGTAAAAC
66 AAATCAAGGGTAAAAC
** *** *
67060813 AGTAATTTTGTAAATCAAGGAT-AAA-AGTTAATTATGTAAATCGGGGGTACTTTGGTAATTTTA
1 AGTAATTTTGTAAATCAAGGATAAAACAG-TAATTATGTAAATCAAGGGTAAAATAGTAATTTTA
*
67060876 CAAGTCAAGGGTA
65 CAAATCAAGGGTA
67060889 TTATAATAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
79 2 0.03
80 41 0.65
81 20 0.32
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (81 bp):
AGTAATTTTGTAAATCAAGGATAAAACAGTAATTATGTAAATCAAGGGTAAAATAGTAATTTTAC
AAATCAAGGGTAAAAC
Found at i:67063220 original size:31 final size:31
Alignment explanation
Indices: 67063178--67063317 Score: 219
Period size: 31 Copynumber: 4.5 Consensus size: 31
67063168 TTTAACGGTT
*
67063178 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
67063209 ACTGGGCCGAAGCCTTATCATAAATCATATG
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
**
67063240 ACTGGGCCGAAGCCTTACCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
67063271 TCTGGGCCGAAGCCTTTTCA-AAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
67063301 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
67063318 ACTGTAAACG
Statistics
Matches: 100, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 26 0.26
31 74 0.74
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:67064420 original size:27 final size:26
Alignment explanation
Indices: 67064386--67064463 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 26
67064376 GGGCATATTC
67064386 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
67064413 GTCATTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAGGGG-TATTACG
* *
67064440 GTCTTTTTACCTAATAGGGGTATT
1 GTCATTTTACCT-ACAGGGGTATT
67064464 TTAGTCATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
26 4 0.09
27 38 0.84
28 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:67064534 original size:27 final size:27
Alignment explanation
Indices: 67064481--67064813 Score: 210
Period size: 27 Copynumber: 12.3 Consensus size: 27
67064471 TTTCACCCTA
* * * **
67064481 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
**
67064508 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * *
67064535 CAATGGTATTTCT-ATAATTTT-TAGAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT--AAA-C
*
67064564 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTGTAAAC
** *
67064591 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** **
67064618 TGAGGGTATTTTGGTAATTTCACT-AAC
1 CAAGGGTATTTTGGTAATTT-TGTAAAC
* **
67064645 CAATGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * **
67064672 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * * * **
67064699 TAGGGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * * *
67064725 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTT-GTAAAC
*
67064752 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* *
67064779 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
*
67064806 CGAGGGTA
1 CAAGGGTA
67064814 AAACAGTAAT
Statistics
Matches: 247, Mismatches: 48, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
26 20 0.08
27 201 0.81
28 6 0.02
29 19 0.08
30 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:67064772 original size:80 final size:80
Alignment explanation
Indices: 67064454--67064799 Score: 261
Period size: 81 Copynumber: 4.3 Consensus size: 80
67064444 TTTTACCTAA
* * *** * * * *
67064454 TAGGGGTATTTTAGTCATTTCACCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTT
1 TAGGGGTATTTTAGTAATTTTACTAAACAAGGGTATTTTGGTAATTTTACAAA-CGAGGGTATTT
** **
67064519 CAGTAATTTTGTAAAC
65 TGGTAATTTTACAAAC
* ** * ** *
67064535 CAATGGTATTTCTA-TAATTTTTA-GAAAGTCAAGGGTATTTCT-GTAATTTTGTAAATCAAGGG
1 TAGGGGTATTT-TAGTAA-TTTTACTAAA--CAAGGGTATTT-TGGTAATTTTACAAA-CGAGGG
67064597 TATTTTGGTAATTTTACAAA-
60 TATTTTGGTAATTTTACAAAC
* * * * * *
67064617 TTGAGGGTATTTTGGTAATTTCACTAACCAATGGTATTTTGGTAATTTTACAAACTAGGGGTATT
1 TAG-GGGTATTTTAGTAATTTTACTAAACAAGGGTATTTTGGTAATTTTACAAACGA-GGGTATT
67064682 TTGGTAATTTTACAAAC
64 TTGGTAATTTTACAAAC
* * * *
67064699 TAGGGGTATTTTAGCAATTTTAC-AAACTAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTT
1 TAGGGGTATTTTAGTAATTTTACTAAACAAGGGTATTTTGGTAATTTTAC-AAACGAGGGTATTT
**
67064763 TGGTAATTTTGTAAAC
65 TGGTAATTTTACAAAC
* *
67064779 CAAGGGTATTTTAGTAATTTT
1 TAGGGGTATTTTAGTAATTTT
67064800 GTAAATCGAG
Statistics
Matches: 208, Mismatches: 45, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
80 66 0.32
81 75 0.36
82 13 0.06
83 53 0.25
84 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (80 bp):
TAGGGGTATTTTAGTAATTTTACTAAACAAGGGTATTTTGGTAATTTTACAAACGAGGGTATTTT
GGTAATTTTACAAAC
Found at i:67064808 original size:54 final size:54
Alignment explanation
Indices: 67064481--67064813 Score: 273
Period size: 54 Copynumber: 6.1 Consensus size: 54
67064471 TTTCACCCTA
* * * ** *
67064481 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAT
* * * *
67064535 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATTTTGTAAAT
*** ** *
67064591 CAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACT-AAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT-TGTAAAT
* * * **
67064645 CAATGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAT
* * * * * *
67064698 CTAGGGGTATTTTAGCAATTTTACAAA-CTAGGGTATTTTGGTAATTTTACT-GAT
1 C-AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT-GTAAAT
* ** *
67064752 CGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAT
*
67064806 CGAGGGTA
1 CAAGGGTA
67064814 AAACAGTAAT
Statistics
Matches: 222, Mismatches: 44, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
53 41 0.18
54 127 0.57
55 17 0.08
56 37 0.17
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAT
Found at i:67064821 original size:27 final size:27
Alignment explanation
Indices: 67064791--67064918 Score: 165
Period size: 27 Copynumber: 4.9 Consensus size: 27
67064781 AGGGTATTTT
*
67064791 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67064818 AGTAATTTTGTAAATCGAGGGTGAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67064845 AGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
67064872 AGTAATTCTGTAAA--GAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67064897 -GATAATTATGTAAATC-AGGGTA
1 AG-TAATTCTGTAAATCGAGGGTA
67064919 CTTTGGTAAT
Statistics
Matches: 91, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
24 1 0.01
25 22 0.24
26 6 0.07
27 62 0.68
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:67064823 original size:54 final size:54
Alignment explanation
Indices: 67064765--67064885 Score: 145
Period size: 54 Copynumber: 2.2 Consensus size: 54
67064755 GGGTATTTTG
*** * *
67064765 GTAATTTTGTAAACCAAGGGT-ATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAACCAAGGGTGA-AACAGTAATTCTATAAATCGAGGGTAAAACA
* * *
67064819 GTAATTTTGTAAATCGAGGGTGAAACAGTAATTCTATAAATTGAGGGTAAAACA
1 GTAATTTTGTAAACCAAGGGTGAAACAGTAATTCTATAAATCGAGGGTAAAACA
*
67064873 GTAATTCTGTAAA
1 GTAATTTTGTAAA
67064886 GAGGGTAAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (54 bp):
GTAATTTTGTAAACCAAGGGTGAAACAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:67067411 original size:40 final size:40
Alignment explanation
Indices: 67067352--67067532 Score: 242
Period size: 40 Copynumber: 4.5 Consensus size: 40
67067342 TATTCGGATG
* *
67067352 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
67067392 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
67067432 ATATCCGGGCTAAATCCCAAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
67067472 ATATCCGGGCTAAGACCCAAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACT
67067512 ATATCC-GGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
67067533 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 14 0.11
40 109 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:67071170 original size:40 final size:40
Alignment explanation
Indices: 67071065--67071281 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
67071055 GGATTGATAA
* **
67071065 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
67071105 CCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67071144 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
67071184 TCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
67071224 CCGGGCTATGTCCCGAAGGTATTCGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
67071264 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67071282 TACTTGGCTG
Statistics
Matches: 153, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 48 0.31
40 104 0.68
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67074743 original size:31 final size:30
Alignment explanation
Indices: 67074705--67074876 Score: 272
Period size: 31 Copynumber: 5.6 Consensus size: 30
67074695 TTTAACGGTT
67074705 ACTGGGCCGAAGCCTTTCCATAAATCATATC
1 ACTGGGCCGAAGCCTTT-CATAAATCATATC
*
67074736 ACTGGGCCGAAGCCTTTTCATAAATCATATT
1 ACTGGGCCGAAGCC-TTTCATAAATCATATC
67074767 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTT-TCATAAATCATATC
67074798 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTT-TCATAAATCATATC
*
67074829 TCTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCC-TTTCATAAATCATATC
*
67074860 ACTAGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
67074877 ACTGTAAACG
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
30 5 0.04
31 123 0.92
32 5 0.04
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (30 bp):
ACTGGGCCGAAGCCTTTCATAAATCATATC
Found at i:67075151 original size:25 final size:24
Alignment explanation
Indices: 67075082--67075162 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
67075072 CTAGAGGCCT
*
67075082 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
67075106 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
* *
67075130 AGCCCTTTTCGGTAAACTGGGG-AT
1 AGCCCTTTT-GATAAACTGGGGCAA
67075154 AGCCCTTTT
1 AGCCCTTTT
67075163 AGCACTTCCT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
23 7 0.13
24 34 0.65
25 11 0.21
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:67076006 original size:27 final size:27
Alignment explanation
Indices: 67075971--67076053 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
67075961 GGGCATATTC
* *
67075971 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACAGGGGTATTACG
* *
67075998 GTCACTTTACCCTACAAGGGCT-TTACA
1 GTCACTTTACCCTAC-AGGGGTATTACG
*
67076025 GTCACTTTACCCTGCAGGGG-ATTTACG
1 GTCACTTTACCCTACAGGGGTA-TTACG
67076052 GT
1 GT
67076054 GTTTTTACCT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
26 4 0.09
27 37 0.80
28 5 0.11
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGTATTACG
Found at i:67076229 original size:27 final size:27
Alignment explanation
Indices: 67076165--67076411 Score: 184
Period size: 27 Copynumber: 9.1 Consensus size: 27
67076155 TTTCTATAAT
* *
67076165 TTTTAGAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
** *
67076193 TTTTGTAAATCAGGGGTATTCTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
67076220 TTTTACAAAT-TGAGGGTATTTCGATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* *
67076247 TTTCACAAA-CTAGTGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
*
67076274 TTTTACAAA-CTAGGGGTAATTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* *
67076301 TTTTACAAA-CTAGGGGTATTTTAGCAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* *
67076328 TTTTACAGACCA-GGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
**
67076354 TTTTACTGATC-GAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
** * * *
67076381 TTTTGTAAACCAAGGGTATTTTAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
67076408 TTTT
1 TTTT
67076412 GTAAATCGAG
Statistics
Matches: 178, Mismatches: 33, Indels: 17
0.78 0.14 0.07
Matches are distributed among these distances:
26 23 0.13
27 146 0.82
28 9 0.05
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:67076299 original size:81 final size:80
Alignment explanation
Indices: 67076178--67076359 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 80
67076168 TAGAAAGTCA
** *
67076178 AGGGTATTTCT-GTAATTTTGTAAA-TCAGGGGTATTCTGGTAATTTTACAAA-TTGAGGGTATT
1 AGGGTATTT-TGGTAATTTTACAAACT-AGGGGTATTCTGGTAATTTTACAAACTAG-GGGTATT
* *
67076240 TCGA-TAATTTCACAAACT
63 T-GAGCAATTTCACAAACC
67076258 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTAATT-TGGTAATTTTACAAACTAGGGGTATTT
1 AG-GGTATTTTGGTAATTTTACAAACTAGGGGT-ATTCTGGTAATTTTACAAACTAGGGGTATTT
* * *
67076322 TAGCAATTTTACAGACC
64 GAGCAATTTCACAAACC
67076339 AGGGTATTTTGGTAATTTTAC
1 AGGGTATTTTGGTAATTTTAC
67076360 TGATCGAGGG
Statistics
Matches: 88, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
80 23 0.26
81 59 0.67
82 6 0.07
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (80 bp):
AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTCTGGTAATTTTACAAACTAGGGGTATTTGA
GCAATTTCACAAACC
Found at i:67076377 original size:80 final size:81
Alignment explanation
Indices: 67076204--67076411 Score: 226
Period size: 80 Copynumber: 2.6 Consensus size: 81
67076194 TTTGTAAATC
* * * * *
67076204 AGGGGTATTCTGGTAATTTTACAAA-TTGAGGGTA-TTTCGATAATTTCACAAACTAGTGGTATT
1 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAG-TAATTTTACAAACCAGTGGTATT
*
67076267 TTGGTAATTTTACAAACT
64 TTGGTAATTTTACAAACG
* * *
67076285 AGGGGTAATTTGGTAATTTTACAAACTAGGGGTATTTTAGCAATTTTACAGACCAG-GGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGTGGTATTTT
* *
67076349 GGTAATTTTACTGATCG
66 GGTAATTTTAC-AAACG
** * *
67076366 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTT
67076412 GTAAATCGAG
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
80 58 0.54
81 43 0.40
82 6 0.06
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGTGGTATTTT
GGTAATTTTACAAACG
Found at i:67076412 original size:27 final size:27
Alignment explanation
Indices: 67076093--67076425 Score: 181
Period size: 27 Copynumber: 12.3 Consensus size: 27
67076083 TTTCACCCTA
* * * *
67076093 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*** *
67076120 CAAGGGTATTCCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
67076147 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* *
67076176 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * * *
67076203 CAGGGGTATTCTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * * *
67076230 TGAGGGTATTTCGATAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
67076256 CTAGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * * *
67076284 TAGGGGTAATTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * * *
67076311 TAGGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
67076338 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
67076364 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
67076391 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
67076418 CGAGGGTA
1 CAAGGGTA
67076426 AAACAGTAAT
Statistics
Matches: 241, Mismatches: 56, Indels: 18
0.77 0.18 0.06
Matches are distributed among these distances:
26 24 0.10
27 187 0.78
28 15 0.06
29 15 0.06
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:67076420 original size:54 final size:54
Alignment explanation
Indices: 67076095--67076425 Score: 210
Period size: 54 Copynumber: 6.1 Consensus size: 54
67076085 TCACCCTACA
* * * ** * *
67076095 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTCCAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
* * * *
67076149 ATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAATC-
1 AGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTT-TAGTAATTTTGTAAATCG
* *** * *** *
67076204 AGGGGTATTCTGGTAATTTTACAAATTGAGGGTA-TTTCGATAATTTCACAAA-CT
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTGTAAATCG
* * * * ** *
67076258 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTAATTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
* * * * * *
67076312 AGGGGTATTTTAGCAATTTTACAGACC-AGGGTATTTTGGTAATTTTACT-GATCG
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT-GTAAATCG
**
67076366 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
67076420 AGGGTA
1 AGGGTA
67076426 AAACAGTAAT
Statistics
Matches: 218, Mismatches: 43, Indels: 32
0.74 0.15 0.11
Matches are distributed among these distances:
52 1 0.00
53 44 0.20
54 118 0.54
55 22 0.10
56 33 0.15
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
Found at i:67076433 original size:27 final size:27
Alignment explanation
Indices: 67076403--67076503 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
67076393 AGGGTATTTT
*
67076403 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67076430 AGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
67076457 AGTAATTCTGTAAA--GAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67076482 -GATAATTATGTAAATCG-GGGTA
1 AG-TAATTCTGTAAATCGAGGGTA
67076504 CTTTGGTAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
24 1 0.02
25 22 0.33
26 5 0.08
27 38 0.58
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:67088394 original size:27 final size:27
Alignment explanation
Indices: 67088359--67088594 Score: 260
Period size: 27 Copynumber: 8.7 Consensus size: 27
67088349 ATACCCCCAG
* * *
67088359 TTGTGAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAAATACCCCTGAT
* * *
67088386 TTATAAAATTACCCAAATA-TCCTCGAT
1 TTGTAAAATTACCAAAATACCCCT-GAT
67088413 TTGTAAAATTACCAAAATA-CCCTCGAT
1 TTGTAAAATTACCAAAATACCCCT-GAT
** * *
67088440 CAGTAAAATTACTAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGAT
* *
67088467 TTGTAAAATTACCAAAATATCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGAT
* *
67088494 TTGTAAAATTACTAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGAT
* **
67088521 TTGTACAATTACCAAAATACCCCTGGC
1 TTGTAAAATTACCAAAATACCCCTGAT
67088548 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGAT
* * *
67088575 TTGTGAAATTATCGAAATAC
1 TTGTAAAATTACCAAAATAC
67088595 TCTCAGTTTG
Statistics
Matches: 179, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 173 0.97
28 4 0.02
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGAT
Found at i:67088604 original size:81 final size:79
Alignment explanation
Indices: 67088338--67088608 Score: 260
Period size: 81 Copynumber: 3.4 Consensus size: 79
67088328 TTAGTTTACC
** * * * * *
67088338 AAATTATTGAAATACCCCCAG-TTGTGAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTATCAAAATACCCCCAGTTTGT-AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
*
67088402 ATATCCTCGATTTGTA
65 ATACCCT-GATTTGTA
* * ** *
67088418 AAATTACCAAAATACCCTC-GATCAGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAA
1 AAATTATCAAAATACCCCCAG-TTTGT-AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
*
67088482 AATATCCCTGGTTTGTA
64 AATA-CCCTGATTTGTA
** *
67088499 AAATTA-CTAAAATACCCCTGGTTTGTACAATTACCAAAATACCCCTGGCTTGTAAAATTACCAA
1 AAATTATC-AAAATACCCCCAGTTTGTA-AATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
*
67088563 AATACCCCTGATTTGTG
64 AATA-CCCTGATTTGTA
* * *
67088580 AAATTATCGAAATACTCTCAGTTTGTAAA
1 AAATTATCAAAATACCCCCAGTTTGTAAA
67088609 ATATCGAAAT
Statistics
Matches: 155, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
79 1 0.01
80 19 0.12
81 130 0.84
82 5 0.03
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.30
Consensus pattern (79 bp):
AAATTATCAAAATACCCCCAGTTTGTAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
TACCCTGATTTGTA
Found at i:67088772 original size:27 final size:27
Alignment explanation
Indices: 67088614--67088774 Score: 180
Period size: 27 Copynumber: 6.0 Consensus size: 27
67088604 GTAAAATATC
* *
67088614 GAAATAACCCTGTAGGGTAGAA-TAAT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
67088640 CGAAATACCCCTGTAAGGTAGAATTACT
1 -GAAATACCCCTGTAGGGTAGAATTACT
* *
67088668 GAAATACCCCTGTAAGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
67088695 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACT
*
67088722 GAAATACCCCTGTAGGATAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
67088749 GAGATACCCTTGTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
67088775 CATTTTGCCC
Statistics
Matches: 113, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
27 110 0.97
28 3 0.03
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:67088773 original size:81 final size:81
Alignment explanation
Indices: 67088604--67088773 Score: 213
Period size: 81 Copynumber: 2.1 Consensus size: 81
67088594 CTCTCAGTTT
* *
67088604 GTAAAA-TATCGAAATAACCCTGTAGGGTAGAATAATCGAAATACCCCTGTAAGGTAGAATTACT
1 GTAAAATTATCGAAATAACCCTATAGGGTAGAATAACCGAAATACCCCTGTAAGGTAGAATTACT
67088668 GAAATACCCCTGTAAG
66 GAAATACCCCTGTAAG
* *
67088684 GTAGAATTATTGAAAT-ACCCTTATAGGGTAGAA-ATACCGAAATACCCCTGT-AGGATAGAATT
1 GTAAAATTATCGAAATAACCC-TATAGGGTAGAATA-ACCGAAATACCCCTGTAAGG-TAGAATT
* * **
67088746 ACTGAGATACCCTTGTGGG
63 ACTGAAATACCCCTGTAAG
67088765 GTAAAATTA
1 GTAAAATTA
67088774 CCATTTTGCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
80 13 0.17
81 64 0.83
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (81 bp):
GTAAAATTATCGAAATAACCCTATAGGGTAGAATAACCGAAATACCCCTGTAAGGTAGAATTACT
GAAATACCCCTGTAAG
Found at i:67090804 original size:29 final size:29
Alignment explanation
Indices: 67090765--67090843 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
67090755 CTTAATAATC
*
67090765 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
67090795 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
67090824 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67090844 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:67092761 original size:25 final size:25
Alignment explanation
Indices: 67092731--67092826 Score: 84
Period size: 25 Copynumber: 3.6 Consensus size: 25
67092721 AATTCACATT
*
67092731 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
* *
67092756 CCGATTCTGATTTTGATTCTGTTACTTGATA
1 -C-----TGATTCTGATTCTGTTACCTGATA
* * *
67092787 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
67092812 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
67092827 ATTCTAGTTC
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
25 34 0.58
26 1 0.02
30 1 0.02
31 23 0.39
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:67092766 original size:31 final size:31
Alignment explanation
Indices: 67092728--67092798 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
67092718 TTAAATTCAC
67092728 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
* *
67092759 ATTCTGATTTTGATTCTGTTACTTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
67092790 ATTCTGATT
1 ATTCTGATT
67092799 CTGTCACCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:67092772 original size:6 final size:6
Alignment explanation
Indices: 67092728--67092840 Score: 72
Period size: 6 Copynumber: 18.3 Consensus size: 6
67092718 TTAAATTCAC
* * * *
67092728 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
67092777 -TTACTTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
67092827 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
67092841 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
5 6 0.07
6 64 0.78
7 9 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:67092822 original size:31 final size:29
Alignment explanation
Indices: 67092728--67092831 Score: 90
Period size: 31 Copynumber: 3.6 Consensus size: 29
67092718 TTAAATTCAC
* * *
67092728 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTCTGATTCTG-TACCT-ATTCTG
* *
67092759 ATTCTGATTTTGATTCTGT---TACT-TG
1 ATTCTGATTCTGATTCTGTACCTATTCTG
*
67092784 ATACTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGT-ACCT-ATTCTG
67092815 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
67092832 AGTTCTGATA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
25 18 0.30
26 1 0.02
27 1 0.02
29 1 0.02
30 3 0.05
31 36 0.60
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (29 bp):
ATTCTGATTCTGATTCTGTACCTATTCTG
Found at i:67094854 original size:27 final size:27
Alignment explanation
Indices: 67094819--67095070 Score: 258
Period size: 27 Copynumber: 9.3 Consensus size: 27
67094809 ATACCCCCAG
* * * *
67094819 TTGTGAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * * *
67094846 TTATAAAATTACCCAAATA-TCCTCGAT
1 TTGTAAAATTACCAAAATACCCCT-GGT
*
67094873 TTGTAAAATTACCAAAATA-CCCTCGAT
1 TTGTAAAATTACCAAAATACCCCT-GGT
** *
67094900 CAGTAAAATTACTAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
67094927 TTGTAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
67094954 TTGTAAAATTACTAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
67094981 TTGTACAATTACCAAAATACCCCTGGC
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
67095008 TTATAAAATTACCAAAATACCCTTGAT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * * *
67095035 TTGTGAAATTATCGAAATA-CTCTCGGT
1 TTGTAAAATTACCAAAATACCCCT-GGT
67095062 TTGTAAAAT
1 TTGTAAAAT
67095071 ATCGAAATAA
Statistics
Matches: 189, Mismatches: 33, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.02
27 181 0.96
28 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGGT
Found at i:67095105 original size:27 final size:27
Alignment explanation
Indices: 67095070--67095287 Score: 235
Period size: 27 Copynumber: 8.1 Consensus size: 27
67095060 GTTTGTAAAA
* *
67095070 TATCGAAATAACCCTGTTGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
*
67095097 AATCGAAATACCCCTGTAGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
*
67095124 TA-CTAAAATACCCCTGTAGGGTAGAAT
1 TATC-GAAATACCCCTGTAGGGTAGAAT
*
67095151 TATCGAAATACCCCTGTAAGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
* *
67095178 TA-CTGAAATACTCCTGTAAGGTAGAAT
1 TATC-GAAATACCCCTGTAGGGTAGAAT
* * *
67095205 TA-CTGAAATACCCTTGTAGGGTAAAAA
1 TATC-GAAATACCCCTGTAGGGTAGAAT
* *
67095232 TACCGAAATGCCCCTGTAGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
* * * * *
67095259 TACCGAGATACCCTTGTGGGGTAAAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
67095286 TA
1 TA
67095288 CCATTTTGCC
Statistics
Matches: 165, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 161 0.98
28 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
TATCGAAATACCCCTGTAGGGTAGAAT
Found at i:67095174 original size:81 final size:80
Alignment explanation
Indices: 67095066--67095288 Score: 275
Period size: 81 Copynumber: 2.8 Consensus size: 80
67095056 CTCGGTTTGT
* * *
67095066 AAAATATCGAAATAACCCTGTTGGGTAGAATAATCGAAATACCCCTGTAGGGTAGAATTACTAAA
1 AAAATATCGAAATACCCCTGTAGGGTAGAATTA-CGAAATACCCCTGTAGGGTAGAATTACTAAA
67095131 ATACCCCTGTAGGGTA
65 ATACCCCTGTAGGGTA
* * * * * *
67095147 GAATTATCGAAATACCCCTGTAAGGTAGAATTACTGAAATACTCCTGTAAGGTAGAATTACTGAA
1 AAAATATCGAAATACCCCTGTAGGGTAGAATTAC-GAAATACCCCTGTAGGGTAGAATTACTAAA
*
67095212 ATACCCTTGTAGGGTA
65 ATACCCCTGTAGGGTA
* * * * * *
67095228 AAAATACCGAAATGCCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTAAAATTAC
1 AAAATATCGAAATACCCCTGTAGGGTAGAATTA-CGAAATACCCCTGTAGGGTAGAATTAC
67095289 CATTTTGCCC
Statistics
Matches: 119, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
80 1 0.01
81 117 0.98
82 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (80 bp):
AAAATATCGAAATACCCCTGTAGGGTAGAATTACGAAATACCCCTGTAGGGTAGAATTACTAAAA
TACCCCTGTAGGGTA
Found at i:67095723 original size:25 final size:28
Alignment explanation
Indices: 67095692--67095769 Score: 90
Period size: 31 Copynumber: 2.8 Consensus size: 28
67095682 GCATTCACAT
67095692 TCTGATTTTGATTCTGTTACCTGATACC
1 TCTGATTTTGATTCTGTTACCTGATACC
67095720 GATTCTGATTTTGATTCTGTTACCTGATA--
1 ---TCTGATTTTGATTCTGTTACCTGATACC
* *
67095749 -CTGATTCTGATTCTGTCACCT
1 TCTGATTTTGATTCTGTTACCT
67095770 AATTCTTATT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
25 19 0.42
31 26 0.58
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (28 bp):
TCTGATTTTGATTCTGTTACCTGATACC
Found at i:67095728 original size:31 final size:31
Alignment explanation
Indices: 67095690--67095760 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
67095680 TTGCATTCAC
67095690 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
67095721 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
67095752 ATTCTGATT
1 ATTCTGATT
67095761 CTGTCACCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:67095734 original size:6 final size:6
Alignment explanation
Indices: 67095690--67095802 Score: 63
Period size: 6 Copynumber: 18.3 Consensus size: 6
67095680 TTGCATTCAC
* * * *
67095690 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
67095739 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTT ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
67095789 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
67095803 AATGTTTCTT
Statistics
Matches: 81, Mismatches: 15, Indels: 22
0.69 0.13 0.19
Matches are distributed among these distances:
5 6 0.07
6 63 0.78
7 9 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:67095780 original size:25 final size:25
Alignment explanation
Indices: 67095721--67095788 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
67095711 CCTGATACCG
* * *
67095721 ATTCTGATTTTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
*
67095746 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
67095771 ATTCTTATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
67095789 ATTCTAGTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:67099221 original size:13 final size:13
Alignment explanation
Indices: 67099203--67099229 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67099193 TAATTAAATG
67099203 AATTAAAAGCTAA
1 AATTAAAAGCTAA
67099216 AATTAAAAGCTAA
1 AATTAAAAGCTAA
67099229 A
1 A
67099230 TTTTGTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (13 bp):
AATTAAAAGCTAA
Found at i:67108406 original size:93 final size:93
Alignment explanation
Indices: 67108277--67108448 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67108267 CGCCCATAAG
* *
67108277 CGAAATCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67108342 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
* *
67108370 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67108435 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
67108449 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:67108445 original size:46 final size:46
Alignment explanation
Indices: 67108270--67108445 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
67108260 TGTAACCCGC
* * *
67108270 CCATAAGCGAAATCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
67108316 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
67108366 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
67108409 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
67108446 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:67115901 original size:46 final size:46
Alignment explanation
Indices: 67115843--67116017 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
67115833 TGTAACCCGC
* *
67115843 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
67115889 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * * *
67115939 --TTCA-TGAACTCGGACTTAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
67115982 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
67116018 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.58
47 26 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:67116010 original size:93 final size:93
Alignment explanation
Indices: 67115851--67116021 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
67115841 GCCCATAAGC
* * *
67115851 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67115916 CGAGCTCGGATGCCTAGTTACATTTCAT
66 CGAGCTCGGATGCCTAGTTACATTTCAT
* * *
67115944 GAACTCGGACTTAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67116009 CGAGTTCGGATGC
66 CGAGCTCGGATGC
67116022 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATTTCAT
Found at i:67121631 original size:40 final size:40
Alignment explanation
Indices: 67121587--67121818 Score: 306
Period size: 40 Copynumber: 5.8 Consensus size: 40
67121577 ATAACCACAA
67121587 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
67121627 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
67121667 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
67121707 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
67121747 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67121787 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
67121819 CATTCAAATG
Statistics
Matches: 162, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.04
40 149 0.92
41 7 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:67121694 original size:80 final size:80
Alignment explanation
Indices: 67121567--67121817 Score: 423
Period size: 80 Copynumber: 3.1 Consensus size: 80
67121557 TCTTCGGAAT
* * * * * * * *
67121567 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
67121631 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
67121646 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
67121711 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
67121726 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
67121791 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
67121806 TTAGCCCGGATA
1 TTAGCCCGGATA
67121818 TCATTCAAAT
Statistics
Matches: 163, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
79 4 0.02
80 159 0.98
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
AAATGCCTTCGGGTC
Found at i:67124732 original size:27 final size:27
Alignment explanation
Indices: 67124701--67124878 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67124691 TAAATTGTAC
67124701 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67124728 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67124754 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67124782 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67124810 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67124837 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67124864 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67124879 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67124815 original size:82 final size:81
Alignment explanation
Indices: 67124702--67124857 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67124692 AAATTGTACA
* *
67124702 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67124766 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67124783 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67124848 TGCGAGTTGA
65 TGCGAATTGA
67124858 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67124869 original size:82 final size:81
Alignment explanation
Indices: 67124698--67124878 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67124688 GATTAAATTG
* *
67124698 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67124763 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67124779 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67124843 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67124861 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67124879 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67132912 original size:40 final size:40
Alignment explanation
Indices: 67132868--67133179 Score: 387
Period size: 40 Copynumber: 7.8 Consensus size: 40
67132858 ATAACCACAA
67132868 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
67132908 GCACAAATGCCTTCGGGTCTTAGCCCGAATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
67132948 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
67132988 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
67133028 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
67133068 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
67133108 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67133148 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
67133180 CATTCAAATG
Statistics
Matches: 225, Mismatches: 41, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
39 9 0.04
40 206 0.92
41 10 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:67132975 original size:80 final size:80
Alignment explanation
Indices: 67132848--67133178 Score: 565
Period size: 80 Copynumber: 4.2 Consensus size: 80
67132838 TCTTCGGAAT
* * * * * * *
67132848 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
67132912 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
67132927 TTAGCCCGAATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
67132992 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
67133007 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
67133072 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
67133087 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
67133152 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
67133167 TTAGCCCGGATA
1 TTAGCCCGGATA
67133179 TCATTCAAAT
Statistics
Matches: 240, Mismatches: 11, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
79 4 0.02
80 236 0.98
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:67138895 original size:70 final size:70
Alignment explanation
Indices: 67138754--67138888 Score: 261
Period size: 70 Copynumber: 1.9 Consensus size: 70
67138744 TGTAAATGAG
*
67138754 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGTAGGACCTCATTACACATGT
1 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
67138819 CAATC
66 CAATC
67138824 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
1 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
67138889 TTATCATGGT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (70 bp):
ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
CAATC
Found at i:67143727 original size:17 final size:18
Alignment explanation
Indices: 67143675--67143724 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
67143665 TTTTAAGAAG
*
67143675 AGTTTTCAATGAAAACAC
1 AGTTTTCGATGAAAACAC
67143693 AGTTTTCGATGAAAACAC
1 AGTTTTCGATGAAAACAC
* *
67143711 GGTTTTCGCTGAAA
1 AGTTTTCGATGAAA
67143725 CACTTCAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (18 bp):
AGTTTTCGATGAAAACAC
Found at i:67157284 original size:30 final size:29
Alignment explanation
Indices: 67157250--67157313 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
67157240 ATGAATCGGA
67157250 AGCTTTGGCACTAAGAGTGCGATTTAAACT
1 AGCTTTGGCACTAAGAGTGCGATTT-AACT
* *
67157280 AGCTTTGGCACTCAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGAGTGCGATTTAACT
67157309 AGCTT
1 AGCTT
67157314 CGACTACTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACTAAGAGTGCGATTTAACT
Found at i:67157323 original size:30 final size:30
Alignment explanation
Indices: 67157266--67157323 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
67157256 GGCACTAAGA
* *
67157266 GTGCGATTTAAACTAGCTTTGGCACTCAGT
1 GTGCGATTTAAACTAGCTTCGACACTCAGT
67157296 GTGCGATTT-AACTAGCTTCGACTACTCA
1 GTGCGATTTAAACTAGCTTCGAC-ACTCA
67157324 AGGCATTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (30 bp):
GTGCGATTTAAACTAGCTTCGACACTCAGT
Found at i:67164526 original size:30 final size:29
Alignment explanation
Indices: 67164492--67164555 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
67164482 ATGAATCGTA
*
67164492 AGCTTTGGCACTAAGTCTGCGATTTAAACT
1 AGCTTTGGCACTAAGTCTGCAATTT-AACT
*
67164522 AGCTTTGGCACTAAGTGTGCAATTTAACT
1 AGCTTTGGCACTAAGTCTGCAATTTAACT
67164551 AGCTT
1 AGCTT
67164556 CGGCTACTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTCTGCAATTTAACT
Found at i:67167302 original size:30 final size:29
Alignment explanation
Indices: 67167268--67167328 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
67167258 GTAATTAAAG
67167268 TTAAAATAACTTAAACAAAATGCATTCATC
1 TTAAAATAACTTAAACAAAATG-ATTCATC
*
67167298 TTAAAATAACTTAAGCAAAATGATTCATC
1 TTAAAATAACTTAAACAAAATGATTCATC
67167327 TT
1 TT
67167329 CTTCATTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.48, C:0.15, G:0.05, T:0.33
Consensus pattern (29 bp):
TTAAAATAACTTAAACAAAATGATTCATC
Found at i:67170684 original size:18 final size:18
Alignment explanation
Indices: 67170663--67170719 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
67170653 TAATAGTTAG
*
67170663 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * *
67170681 TTATTCAATAATAATCAG
1 TTATTCAGTAACAATCAA
*
67170699 TTATTCAGTATCAATCAA
1 TTATTCAGTAACAATCAA
67170717 TTA
1 TTA
67170720 AATTATTCAG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:67170930 original size:53 final size:53
Alignment explanation
Indices: 67170867--67170970 Score: 163
Period size: 53 Copynumber: 2.0 Consensus size: 53
67170857 GCAGTAGAAG
* *
67170867 TACGGTACACAGAGTACCTCATCGGAACAAATCCAAAACTGTAACACTAACAA
1 TACGGTACACAGAGTACCTCATCGAAACAAATCCAAAACAGTAACACTAACAA
* * *
67170920 TACGGTACACAGAGTACCTCATCGAAATAAATCCGAAACAGTAACAGTAAC
1 TACGGTACACAGAGTACCTCATCGAAACAAATCCAAAACAGTAACACTAAC
67170971 GGTAACAGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.17
Consensus pattern (53 bp):
TACGGTACACAGAGTACCTCATCGAAACAAATCCAAAACAGTAACACTAACAA
Found at i:67172078 original size:17 final size:18
Alignment explanation
Indices: 67172042--67172081 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
67172032 CACACCTTCA
67172042 CTTTTCCCTTTTCATCTTT
1 CTTTTCCCTTTT-ATCTTT
*
67172061 CTTTTCTCTTTT-TCTTT
1 CTTTTCCCTTTTATCTTT
67172078 CTTT
1 CTTT
67172082 CTTTCCTCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
19 11 0.55
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.70
Consensus pattern (18 bp):
CTTTTCCCTTTTATCTTT
Found at i:67174504 original size:399 final size:397
Alignment explanation
Indices: 67173348--67174545 Score: 1964
Period size: 398 Copynumber: 3.0 Consensus size: 397
67173338 TTCGGGGTAG
*
67173348 TGGCAAGCAGCGTATGTGTGTGTTTAGAAGGTCGCAGGTTCGAGATGTATAGTAGGTGAAATTTC
1 TGGCAAGCAGCGTATGTGTGTGTTTAGAAGGTCGCAGGTTCGAGATGTATAGCAGGTGAAATTTC
67173413 CTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
66 CTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
* *
67173478 TAGTGTAAAGGAAAGATTGGTGTAGTGGCCAGCATAGGATGTGGAGTGTAGGGACAGGAGGAGGT
131 TAGTGTAAA-GAAAGATTGGTGTAGTGGCCAGCACAGGATGTGGAGCGTAGGGACAGGAGGAGGT
* * *
67173543 CTGGAGTTCGAGCTGCTGTGTGCGTGAAGGACCAATTTTGCTGCTTGCATGGGGAAGGAGTTGGA
195 CTGGAGTTCGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGGA
* * *
67173608 GTCTGATCAGACTCTCTTATCAGTGTGCTGGAACGGTGCAAGGGGTGGATAGGGCTGCTAAACAG
260 GTCTGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACAG
*
67173673 TGGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAATGAGCAAAATAAGGAC
325 TGGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGAC
67173738 TTTGAATA
390 TTTGAATA
* * *
67173746 TGGAAAGCAGCGTATGTGTGTGTTTAGAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTTC
1 TGGCAAGCAGCGTATGTGTGTGTTTAGAAGGTCGCAGGTTCGAGATGTATAGCAGGTGAAATTTC
*
67173811 CTTTTTATTTCGTAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
66 CTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
* * * *
67173876 TAGTGTAAAGAAAGATTGGTGTACTGGCCAGCAACAGGATGTAGAGCATAGGGACAGAAGGAGGT
131 TAGTGTAAAGAAAGATTGGTGTAGTGGCCAGC-ACAGGATGTGGAGCGTAGGGACAGGAGGAGGT
*
67173941 CTGGAGTTCGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTACTCGCGTGGGGAAGGAGTTGGA
195 CTGGAGTTCGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGGA
* *
67174006 GTCTGATCAGACTCTCTTAGCAGCGTGTTGGAACGGTGCAAGGGGTGGATAAGGCTTCTAAACAG
260 GTCTGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACAG
* * * *
67174071 TTGGAAGAAGTGTGAATGAAATTCAAACTGTGCTAATGGCTAAAATTAAGGAGCAAAATAAGGAC
325 TGGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGAC
67174136 TTTGAATA
390 TTTGAATA
*
67174144 TGGCAAGCAGCGTATATGTGTGTTTAGAAGGTCGCAGGTTCGAGATGTATAGCAGGTGAAATTTC
1 TGGCAAGCAGCGTATGTGTGTGTTTAGAAGGTCGCAGGTTCGAGATGTATAGCAGGTGAAATTTC
* * * **
67174209 TTTTTTATTTCGCAAGTAATCGAGGCTTCAGCAGGAATATATTAAGAGTAATTGTGACTTTATTA
66 CTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
* *
67174274 TAGTGTAAATGAAAGATTGGTGCAGTGGCCAGCAGCAGGATGTGGAGCGCAGGGACAGGAGGAGG
131 TAGTGTAAA-GAAAGATTGGTGTAGTGGCCAGCA-CAGGATGTGGAGCGTAGGGACAGGAGGAGG
** *
67174339 TCTAAAGTTCGAGCTGCTGTGTGCGCGGAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGG
194 TCTGGAGTTCGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGG
* * * * *
67174404 AGTCTGATCAGACTCTCTTAGCGGCATGCTGGAATGGTGCAAGGGGTAGATAAGGCTGCTAAACG
259 AGTCTGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACA
* * *
67174469 GTGGGAAGGAGTTTGAATGAAATACAAATTGTGCTAAGGGTTAAAATTAAGGAGCAAAATAAGGA
324 GTGGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGA
67174534 CTTTGAATA
389 CTTTGAATA
67174543 TGG
1 TGG
67174546 GAAGGACGGT
Statistics
Matches: 738, Mismatches: 59, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
397 22 0.03
398 480 0.65
399 236 0.32
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (397 bp):
TGGCAAGCAGCGTATGTGTGTGTTTAGAAGGTCGCAGGTTCGAGATGTATAGCAGGTGAAATTTC
CTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
TAGTGTAAAGAAAGATTGGTGTAGTGGCCAGCACAGGATGTGGAGCGTAGGGACAGGAGGAGGTC
TGGAGTTCGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGGAG
TCTGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACAGT
GGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGACT
TTGAATA
Found at i:67175221 original size:22 final size:22
Alignment explanation
Indices: 67175191--67175236 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
67175181 CAAGGGGACG
*
67175191 TACAACAAAGGGCTTTGGAGGC
1 TACAACAAAAGGCTTTGGAGGC
*
67175213 TACAGCAAAAGGCTTTGGAGGC
1 TACAACAAAAGGCTTTGGAGGC
67175235 TA
1 TA
67175237 ACACGGTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (22 bp):
TACAACAAAAGGCTTTGGAGGC
Found at i:67175900 original size:27 final size:27
Alignment explanation
Indices: 67175870--67175990 Score: 183
Period size: 27 Copynumber: 4.5 Consensus size: 27
67175860 ATGGAGGAAG
*
67175870 TGTTCTGGTGGCTATGCTACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
67175897 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
* *
67175924 TATTCTGGTGGCTACGCCACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
67175951 TGTTCTGGTGGC-ACTGCCAC-AATATC
1 TGTTCTGGTGGCTA-TGCCACAAATATC
67175977 TGTATCTGGTGGCT
1 TGT-TCTGGTGGCT
67175991 CTGTCACATT
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.12
27 76 0.88
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (27 bp):
TGTTCTGGTGGCTATGCCACAAATATC
Found at i:67175998 original size:27 final size:27
Alignment explanation
Indices: 67175870--67176020 Score: 173
Period size: 27 Copynumber: 5.6 Consensus size: 27
67175860 ATGGAGGAAG
* *
67175870 TGTTCTGGTGGCTATGCTACAAATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
*
67175897 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
*
67175924 TATTCTGGTGGCTAC-GCCACAAATATC
1 TGTTCTGGTGGCT-CTGCCACAAATATC
*
67175951 TGTTCTGGTGGCACTGCCAC-AATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
* *
67175977 TGTATCTGGTGGCTCTGTCAC-ATTATC
1 TGT-TCTGGTGGCTCTGCCACAAATATC
* **
67176004 TATTCTGGCAGCTCTGC
1 TGTTCTGGTGGCTCTGC
67176021 TGCAAATTCT
Statistics
Matches: 109, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
26 21 0.19
27 88 0.81
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
TGTTCTGGTGGCTCTGCCACAAATATC
Found at i:67194389 original size:27 final size:27
Alignment explanation
Indices: 67194359--67194420 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
67194349 CCCTAAAATA
* *
67194359 GGTAAAATAACCATAATTCCCTTGTAG
1 GGTAAAATAACCATAATACCCCTGTAG
* ** *
67194386 GGTAAAATGACTGTAATACCCCTGTAT
1 GGTAAAATAACCATAATACCCCTGTAG
67194413 GGTAAAAT
1 GGTAAAAT
67194421 GACGATTATG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (27 bp):
GGTAAAATAACCATAATACCCCTGTAG
Found at i:67194421 original size:27 final size:27
Alignment explanation
Indices: 67194372--67194423 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
67194362 AAAATAACCA
* *
67194372 TAATTCCCTTGTAGGGTAAAATGACTG
1 TAATACCCCTGTAGGGTAAAATGACTG
*
67194399 TAATACCCCTGTATGGTAAAATGAC
1 TAATACCCCTGTAGGGTAAAATGAC
67194424 GATTATGGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (27 bp):
TAATACCCCTGTAGGGTAAAATGACTG
Found at i:67194616 original size:27 final size:27
Alignment explanation
Indices: 67194564--67194645 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
67194554 GGAAATACAG
* *
67194564 TACTGGTGACTATGTCAC-ATTCACTGT
1 TACTGGTGGCTATGCCACAATT-ACTGT
* *
67194591 TGCTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGT
* *
67194618 TACTGGTGGCTTTGCCACACTTACTGT
1 TACTGGTGGCTATGCCACAATTACTGT
67194645 T
1 T
67194646 TTGGCAGCTA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 43 0.93
28 3 0.07
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGT
Found at i:67194873 original size:33 final size:33
Alignment explanation
Indices: 67194794--67194931 Score: 155
Period size: 33 Copynumber: 4.3 Consensus size: 33
67194784 ACTGCATTAC
* * *
67194794 ACTGTACTGATACTATATTGGGCTTAGG-CCAC
1 ACTGTACTGATACTATATAGGGCTAAGGCCCAG
67194826 AC--TA-T--TACTATATAGGGCTAAGGCCCAG
1 ACTGTACTGATACTATATAGGGCTAAGGCCCAG
*
67194854 ACTGTGCTGATACTATATAGGGCTAAGGCCCAG
1 ACTGTACTGATACTATATAGGGCTAAGGCCCAG
* *
67194887 ACTGTACTGATACTGA-ATAGGGCTCAGGCCTAG
1 ACTGTACTGATACT-ATATAGGGCTAAGGCCCAG
67194920 ACTGTTACTGAT
1 ACTG-TACTGAT
67194932 CTAGGCTTAG
Statistics
Matches: 91, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
27 16 0.18
28 5 0.05
29 1 0.01
30 3 0.03
31 1 0.01
32 2 0.02
33 55 0.60
34 8 0.09
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (33 bp):
ACTGTACTGATACTATATAGGGCTAAGGCCCAG
Found at i:67197136 original size:43 final size:43
Alignment explanation
Indices: 67197089--67197182 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
67197079 CCAAACGTGA
*
67197089 TCTTACATGTAATGACATAT-CGATACC-ATTGTCCCAGACAGGG
1 TCTTACACG-AATGACATATACGATACCGATT-TCCCAGACAGGG
* * *
67197132 TCTTACACGAATTACATATACGATGCCGATTTCCCAGACATGG
1 TCTTACACGAATGACATATACGATACCGATTTCCCAGACAGGG
*
67197175 ACTTACAC
1 TCTTACAC
67197183 ACGATCACAT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
42 9 0.20
43 32 0.73
44 3 0.07
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
TCTTACACGAATGACATATACGATACCGATTTCCCAGACAGGG
Found at i:67200517 original size:27 final size:28
Alignment explanation
Indices: 67200456--67200565 Score: 115
Period size: 27 Copynumber: 4.1 Consensus size: 28
67200446 CAGCATGGCT
* *
67200456 ACCAG-AACAGATA-TTGT-G-ACAGTC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
* * *
67200480 ACCAGATACAGATA-TTATGGTAGAGCC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
*
67200507 ACCAGAAACAGATATTTGTGGCAGAACC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
*
67200535 ACCAG-ATCAGATATTTGTGGCAGAGCC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
67200562 ACCA
1 ACCA
67200566 AAATGCTTCC
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
24 5 0.07
25 10 0.14
26 1 0.01
27 41 0.57
28 15 0.21
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (28 bp):
ACCAGAAACAGATATTTGTGGCAGAGCC
Found at i:67200560 original size:55 final size:51
Alignment explanation
Indices: 67200456--67200565 Score: 132
Period size: 55 Copynumber: 2.1 Consensus size: 51
67200446 CAGCATGGCT
* *
67200456 ACCAGAACAGATATTGTGACAGTCACCAGATACAGATATTATGGTAGAGCC
1 ACCAGAACAGATATTGTGACAGCCACCAGATACAGATATTATGGCAGAGCC
* *
67200507 ACCAGAAACAGATATTTGTGGCAGAACCACCAGAT-CAGATATTTGTGGCAGAGCC
1 ACCAG-AACAGATA-TTGTGACAG--CCACCAGATACAGATA-TTATGGCAGAGCC
67200562 ACCA
1 ACCA
67200566 AAATGCTTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
51 5 0.10
52 8 0.16
53 8 0.16
54 6 0.12
55 23 0.46
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (51 bp):
ACCAGAACAGATATTGTGACAGCCACCAGATACAGATATTATGGCAGAGCC
Found at i:67201820 original size:25 final size:22
Alignment explanation
Indices: 67201766--67201820 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
67201756 TTTCGGCCAG
67201766 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
67201788 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
67201813 AGGAAGAA
1 A-GAAGAA
67201821 TTCGACACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:67208326 original size:27 final size:28
Alignment explanation
Indices: 67208284--67208389 Score: 126
Period size: 27 Copynumber: 3.8 Consensus size: 28
67208274 CTGCCAGAAC
* *
67208284 ATATATTGTGACAGAGTCACCAGATACAG
1 ATAT-TTGTGGCAGAGCCACCAGATACAG
* * * * *
67208313 ATA-CTATGGCAGAGCCACTAGAAATAG
1 ATATTTGTGGCAGAGCCACCAGATACAG
67208340 ATATTTGTGGCAGAGCCACCAGAT-CAG
1 ATATTTGTGGCAGAGCCACCAGATACAG
67208367 ATATTTGTGGCAGAGCCACCAGA
1 ATATTTGTGGCAGAGCCACCAGA
67208390 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
27 45 0.70
28 16 0.25
29 3 0.05
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (28 bp):
ATATTTGTGGCAGAGCCACCAGATACAG
Found at i:67208378 original size:55 final size:56
Alignment explanation
Indices: 67208284--67208390 Score: 146
Period size: 55 Copynumber: 1.9 Consensus size: 56
67208274 CTGCCAGAAC
* *
67208284 ATATATTGTGACAGAGTCACCAGATACAGATACTATGGCAGAGCCACTAGAAATAG
1 ATATATTGTGACAGAGCCACCAGATACAGATACTATGGCAGAGCCACCAGAAATAG
* * *
67208340 ATAT-TTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCACCAGAA
1 ATATATTGTGACAGAGCCACCAGATACAGATA-CTATGGCAGAGCCACCAGAA
67208391 CGCTTCCTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 6 0.13
55 35 0.78
56 4 0.09
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (56 bp):
ATATATTGTGACAGAGCCACCAGATACAGATACTATGGCAGAGCCACCAGAAATAG
Found at i:67209640 original size:25 final size:22
Alignment explanation
Indices: 67209586--67209640 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
67209576 TTTTGGCCAG
67209586 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
67209608 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
67209633 AGGAAGAA
1 A-GAAGAA
67209641 TTCGACACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:67213170 original size:13 final size:13
Alignment explanation
Indices: 67213152--67213178 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67213142 TCACAATTTT
67213152 GGAAGAAATTGCA
1 GGAAGAAATTGCA
67213165 GGAAGAAATTGCA
1 GGAAGAAATTGCA
67213178 G
1 G
67213179 AAAGCTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.33, T:0.15
Consensus pattern (13 bp):
GGAAGAAATTGCA
Found at i:67215177 original size:17 final size:18
Alignment explanation
Indices: 67215152--67215191 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
67215142 AGCCTTGGCC
* *
67215152 CAGTGCAGTAACAGT-AA
1 CAGTACAGTAACAATAAA
67215169 CAGTACAGTAACAATAAA
1 CAGTACAGTAACAATAAA
67215187 CAGTA
1 CAGTA
67215192 TGCAAAGTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.17
Consensus pattern (18 bp):
CAGTACAGTAACAATAAA
Found at i:67215622 original size:27 final size:27
Alignment explanation
Indices: 67215493--67215651 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 27
67215483 ACATACATCA
* * *
67215493 CATAGGGGTAAAACAGTCATCTTACCAT
1 CATAAGGGCAAAACAGTCATTTTACC-T
* * *
67215521 -AAAAGGGCAAAATAGTCATTTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCT
* **
67215547 CATAAAGGCAAAACAACCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
* * * *
67215574 CATAAGGGCAGAATATTTATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
* * * *
67215601 TATAAGGGAAAAACAATCATTTCACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
*
67215628 CACAAGGGCAAAACAGTCATTTTA
1 CATAAGGGCAAAACAGTCATTTTA
67215652 TGTAACATCT
Statistics
Matches: 100, Mismatches: 30, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCT
Found at i:67216744 original size:47 final size:47
Alignment explanation
Indices: 67216618--67216829 Score: 280
Period size: 47 Copynumber: 4.7 Consensus size: 47
67216608 GTTATACGTG
* * *
67216618 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACAT
*
67216665 GTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATACAT
1 -TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACAT
* *
67216713 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACAT
*
67216751 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACAT
*
67216798 TAACGTAGTGCTAAGTGGATATGCCACGGTTA
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTA
67216830 TACATGTTAA
Statistics
Matches: 145, Mismatches: 10, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
38 31 0.21
39 1 0.01
40 2 0.01
41 2 0.01
44 2 0.01
45 2 0.01
46 1 0.01
47 61 0.42
48 43 0.30
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACAT
Found at i:67216764 original size:38 final size:37
Alignment explanation
Indices: 67216709--67216782 Score: 130
Period size: 38 Copynumber: 2.0 Consensus size: 37
67216699 ATATATTGAT
67216709 ACATTAACGTGGTGCTAAGTGGATATACCACGGTTAA
1 ACATTAACGTGGTGCTAAGTGGATATACCACGGTTAA
*
67216746 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 ACAT-TAACGTGGTGCTAAGTGGATATACCACGGTTA
67216783 CATATATTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 4 0.11
38 31 0.89
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (37 bp):
ACATTAACGTGGTGCTAAGTGGATATACCACGGTTAA
Found at i:67216766 original size:85 final size:85
Alignment explanation
Indices: 67216661--67216836 Score: 307
Period size: 85 Copynumber: 2.1 Consensus size: 85
67216651 ACATATTGAT
* *
67216661 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATACATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACATTAACGTAGTGCTA
67216726 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
67216746 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTAGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACATTAACGTAGTGCTA
* *
67216811 AGTGGATATGCCACGGTTAT
66 AGTGGATATACCACGGTTAA
67216831 ACATGT
1 ACATGT
67216837 TAATTTGAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATACATTAACGTAGTGCTA
AGTGGATATACCACGGTTAA
Found at i:67219244 original size:29 final size:28
Alignment explanation
Indices: 67219208--67219285 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
67219198 TCATGAGATT
67219208 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
67219238 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
67219265 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
67219286 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:67219503 original size:174 final size:174
Alignment explanation
Indices: 67219238--67219739 Score: 905
Period size: 174 Copynumber: 2.9 Consensus size: 174
67219228 AAATTGTACA
*
67219238 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
67219303 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
67219368 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
67219412 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
67219477 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
67219542 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
** *
67219586 GCACTAAGTGTGTGAGTTTTTAGTACATGGCACTAAGTGTGTGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
67219651 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
67219716 TTTTGGACAGCGGAAATGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
67219740 ACCTTGAGTT
Statistics
Matches: 315, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 315 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:67227583 original size:40 final size:40
Alignment explanation
Indices: 67227553--67227762 Score: 305
Period size: 40 Copynumber: 5.3 Consensus size: 40
67227543 GGACTAAGAT
* * * *
67227553 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
67227593 CCGAAGGCATTCGTGCGAGTTATTAAATACGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
67227633 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
67227673 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
67227713 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
67227752 CCGAAGGCATT
1 CCGAAGGCATT
67227763 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 34 0.22
40 123 0.78
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:67227782 original size:79 final size:80
Alignment explanation
Indices: 67227553--67227797 Score: 244
Period size: 80 Copynumber: 3.1 Consensus size: 80
67227543 GGACTAAGAT
* * * * * ** * *
67227553 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
*
67227617 AAATACGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
67227633 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
67227698 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
67227713 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
67227777 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
67227791 CCGAAGG
1 CCGAAGG
67227798 TACGTGATTT
Statistics
Matches: 143, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 82 0.57
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:67234490 original size:40 final size:40
Alignment explanation
Indices: 67234460--67234669 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
67234450 GGACTAAGAT
* * * *
67234460 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
67234500 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
67234540 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
67234580 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
67234620 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
67234659 CCGAAGGCATT
1 CCGAAGGCATT
67234670 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 34 0.21
40 125 0.79
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:67234544 original size:80 final size:80
Alignment explanation
Indices: 67234407--67234669 Score: 316
Period size: 80 Copynumber: 3.3 Consensus size: 80
67234397 TTGAATGCTG
* * * * * **
67234407 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
67234470 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
67234487 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
67234552 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * *
67234567 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
67234631 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
67234646 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
67234670 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 36 0.23
80 117 0.74
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:67234621 original size:120 final size:120
Alignment explanation
Indices: 67234407--67234669 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
67234397 TTGAATGCTG
* * *
67234407 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
67234471 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * **
67234527 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * *
67234590 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
67234646 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
67234670 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
119 35 0.29
120 81 0.66
121 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:67234689 original size:79 final size:80
Alignment explanation
Indices: 67234460--67234704 Score: 253
Period size: 80 Copynumber: 3.1 Consensus size: 80
67234450 GGACTAAGAT
* * * * * ** * *
67234460 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
67234524 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
67234540 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
67234605 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
67234620 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
67234684 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
67234698 CCGAAGG
1 CCGAAGG
67234705 TACGTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 83 0.58
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:67237555 original size:29 final size:28
Alignment explanation
Indices: 67237519--67237596 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
67237509 TCATGAGATT
67237519 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
67237549 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
67237576 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
67237597 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:67237839 original size:174 final size:174
Alignment explanation
Indices: 67237549--67238050 Score: 932
Period size: 174 Copynumber: 2.9 Consensus size: 174
67237539 AAATTGTACA
*
67237549 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
67237614 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
* *
67237679 TTTTGGACAGCGGAAAAGGTAAGTTTGCGAACTTGAAATGTATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
67237723 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTACGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
67237788 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
67237853 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
67237897 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
67237962 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
67238027 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
67238051 ACCTTGTGTT
Statistics
Matches: 318, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 318 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:67243678 original size:45 final size:45
Alignment explanation
Indices: 67243614--67243801 Score: 279
Period size: 45 Copynumber: 4.2 Consensus size: 45
67243604 CGGACTTCGG
*
67243614 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTTGA
* * *
67243659 GCCTAGCAGGCTATGATGCCAGTGAGATATTATTCAGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTTGA
*
67243704 GCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTTAA
1 GCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTTGA
* * * *
67243749 GCCTAGTAGGCTATGATG-CAGGTGAGATATTATTTGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCA-GTGAAATACTATTCGGGCCTTTGA
67243794 GCCTAGCA
1 GCCTAGCA
67243802 TGTGACAGCC
Statistics
Matches: 128, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
44 2 0.02
45 126 0.98
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
GCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTTGA
Found at i:67243767 original size:90 final size:90
Alignment explanation
Indices: 67243614--67243801 Score: 315
Period size: 90 Copynumber: 2.1 Consensus size: 90
67243604 CGGACTTCGG
* *
67243614 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCC
1 GCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTTAAGCCTAGCAGGCTATGATG-C
67243679 A-GTGAGATATTATTCAGGCCTTTGA
65 AGGTGAGATATTATTCAGGCCTTTGA
*
67243704 GCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTTAAGCCTAGTAGGCTATGATGCA
1 GCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTTAAGCCTAGCAGGCTATGATGCA
**
67243769 GGTGAGATATTATTTGGGCCTTTGA
66 GGTGAGATATTATTCAGGCCTTTGA
67243794 GCCTAGCA
1 GCCTAGCA
67243802 TGTGACAGCC
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
89 2 0.02
90 90 0.98
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (90 bp):
GCCTAGCAGGCTATGATGCCAGTGAAATACTATTCGGGCCTTTAAGCCTAGCAGGCTATGATGCA
GGTGAGATATTATTCAGGCCTTTGA
Found at i:67245708 original size:40 final size:40
Alignment explanation
Indices: 67245653--67245870 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
67245643 TGGATGATAA
* * * *
67245653 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-C
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-TAT
*
67245693 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
*
67245733 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
*
67245773 CCGGGCTAAGTCCCGAAGGCATTCGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
* *
67245813 CCGGGCTATGTCCCGAAGGCATTCG-AGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTA-CTATAT
* *
67245853 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67245871 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 17 0.10
40 147 0.90
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
Found at i:67247902 original size:40 final size:40
Alignment explanation
Indices: 67247865--67248050 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
67247855 GCTACTCGTT
*
67247865 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
67247905 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
67247945 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * ** *
67247985 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCAGTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
67248026 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67248051 CATCATTCAA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 112 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67252764 original size:15 final size:15
Alignment explanation
Indices: 67252744--67252785 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
67252734 GCTGTAAATG
67252744 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
67252759 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
67252774 GGATTTCCTTAT
1 GGATTTCCTTAT
67252786 TCGGAGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:67255086 original size:38 final size:38
Alignment explanation
Indices: 67255035--67255325 Score: 179
Period size: 38 Copynumber: 6.9 Consensus size: 38
67255025 AATGAAAAAT
*
67255035 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
*
67255073 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAAC
* ** *
67255121 GTGGTGCTAAGTGGATATGCCACATTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------TAAC
* * *
67255168 GTGGTGCTAAGTGGATATACCATGGTTAAACATGTAAT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* *
67255206 GTGGTGCTAAGTGGATATGA-CATGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATAT-ACCACGGTT--ATACA-TG------TAAC
*
67255253 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* * *
67255291 GTGGTGATAAGTGGATATGCCACGGTTGTACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGT
67255326 TAATTTGAAA
Statistics
Matches: 200, Mismatches: 24, Indels: 58
0.71 0.09 0.21
Matches are distributed among these distances:
38 87 0.44
39 3 0.01
40 7 0.04
41 4 0.02
44 4 0.02
45 6 0.03
46 1 0.00
47 56 0.28
48 32 0.16
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
Found at i:67255138 original size:48 final size:48
Alignment explanation
Indices: 67255062--67255285 Score: 215
Period size: 47 Copynumber: 4.9 Consensus size: 48
67255052 TACCACGGTT
*
67255062 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* *
67255110 ATACATGTAACGTGGTGCTAAGTGGATATGCCAC-ATTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGA-TTACACATATTG
* * *
67255158 ATTCAT-TAACGTGGTGCTAAGTGGATATACCATG-GT-----TA---
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
67255196 A-ACATGTAATGTGGTGCTAAGTGGATATGA-CATGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATAT-ACCACGATTACACATATTG
* * *
67255243 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACAT
67255286 GTAACGTGGT
Statistics
Matches: 146, Mismatches: 15, Indels: 31
0.76 0.08 0.16
Matches are distributed among these distances:
37 3 0.02
38 26 0.18
39 2 0.01
41 2 0.01
44 2 0.01
46 2 0.01
47 58 0.40
48 51 0.35
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:67255215 original size:85 final size:86
Alignment explanation
Indices: 67255112--67255313 Score: 347
Period size: 85 Copynumber: 2.4 Consensus size: 86
67255102 ACATATTGAT
67255112 ACATGTAACGTGGTGCTAAGTGGATATGCCACAT-TTACATATATTGATTCATTAACGTGGTGCT
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACATGTTACATATATTGATTCATTAACGTGGTGCT
*
67255176 AAGTGGATATACCATGGTTAA
66 AAGTGGATATACCACGGTTAA
*
67255197 ACATGTAATGTGGTGCTAAGTGGATATG--ACATGGTTACATATATTGATTCATTAACGTGGTGC
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACAT-GTTACATATATTGATTCATTAACGTGGTGC
67255260 TAAGTGGATATACCACGGTTAA
65 TAAGTGGATATACCACGGTTAA
*
67255282 ACATGTAACGTGGTGATAAGTGGATATGCCAC
1 ACATGTAACGTGGTGCTAAGTGGATATGCCAC
67255314 GGTTGTACAT
Statistics
Matches: 109, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
83 4 0.04
85 103 0.94
87 2 0.02
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (86 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACATGTTACATATATTGATTCATTAACGTGGTGCT
AAGTGGATATACCACGGTTAA
Found at i:67262147 original size:40 final size:40
Alignment explanation
Indices: 67262078--67262275 Score: 261
Period size: 40 Copynumber: 5.2 Consensus size: 40
67262068 AACCCAAGTA
* * *
67262078 CCTTCGGAATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67262117 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
67262157 CCTTCGCGACTTGGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67262197 CCTTCGGGACTTAGCCCGG--ATA-TAA-TCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
67262232 CCTT--GGACTTAG-CCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67262269 CCTTCGG
1 CCTTCGG
67262276 ATCTTAGTCC
Statistics
Matches: 140, Mismatches: 11, Indels: 16
0.84 0.07 0.10
Matches are distributed among these distances:
32 4 0.03
33 8 0.06
34 3 0.02
35 10 0.07
36 10 0.07
37 11 0.08
38 3 0.02
39 13 0.09
40 78 0.56
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67263594 original size:13 final size:13
Alignment explanation
Indices: 67263571--67263604 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
67263561 TTATTTTATT
67263571 ATTTCTAACACAAA
1 ATTT-TAACACAAA
67263585 ATTTTAACACAAA
1 ATTTTAACACAAA
67263598 ATGTTTA
1 AT-TTTA
67263605 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Done.