Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 211 of 295
Found at i:67270204 original size:40 final size:40
Alignment explanation
Indices: 67270112--67270209 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
67270102 AACCCAAGTA
*
67270112 CCTTCGGGAT-TTAGCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGATCTTAGCCGGATATAGCAACTAGCACAAATG
67270151 CCTTCGGGA-CTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGATCTTAG-CCGGATATAG-CAACTAGCACAAATG
67270191 CCTTC-GGATCTTAGTCCGG
1 CCTTCGGGATCTTAG-CCGG
67270210 TTATCATCCG
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
39 16 0.30
40 36 0.68
41 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGATCTTAGCCGGATATAGCAACTAGCACAAATG
Found at i:67271525 original size:13 final size:13
Alignment explanation
Indices: 67271502--67271535 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
67271492 TTATTTTATT
67271502 ATTTCTAACACAAA
1 ATTT-TAACACAAA
67271516 ATTTTAACACAAA
1 ATTTTAACACAAA
67271529 ATGTTTA
1 AT-TTTA
67271536 TAATATGTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:67275347 original size:43 final size:42
Alignment explanation
Indices: 67275300--67275409 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 42
67275290 TCCTAGACGT
*
67275300 GGTCTTACATGTAATCACATATCGATG-CCATTGTCCCAAACAG
1 GGTCTTACACG-AATCACATATCGATGTCCA-TGTCCCAAACAG
* * * *
67275343 GGTCTTACACGAATCACATATACGATGTCGATGTCCTAGACAT
1 GGTCTTACACGAATCACATAT-CGATGTCCATGTCCCAAACAG
67275386 GGTCTTACACGCAATCACATATCG
1 GGTCTTACACG-AATCACATATCG
67275410 TAAATCCTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 10 0.17
43 37 0.63
44 12 0.20
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (42 bp):
GGTCTTACACGAATCACATATCGATGTCCATGTCCCAAACAG
Found at i:67275429 original size:44 final size:43
Alignment explanation
Indices: 67275343--67275429 Score: 97
Period size: 44 Copynumber: 2.0 Consensus size: 43
67275333 TCCCAAACAG
** *
67275343 GGTCTTACACGAATCACATATACGATGTCGATGTCCTAGACAT
1 GGTCTTACACGAATCACATATACGAAATCGATGTCATAGACAT
*
67275386 GGTCTTACACGCAATCACATAT-CGTAAATCCTATGTCAT-GACAT
1 GGTCTTACACG-AATCACATATACG-AAAT-CGATGTCATAGACAT
67275430 ATGTATCATA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
43 13 0.35
44 17 0.46
45 7 0.19
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
GGTCTTACACGAATCACATATACGAAATCGATGTCATAGACAT
Found at i:67276588 original size:13 final size:13
Alignment explanation
Indices: 67276570--67276594 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67276560 TATAAACACC
67276570 AAAAATATTTTTA
1 AAAAATATTTTTA
67276583 AAAAATATTTTT
1 AAAAATATTTTT
67276595 CTATCTCGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AAAAATATTTTTA
Found at i:67279691 original size:39 final size:39
Alignment explanation
Indices: 67279644--67279777 Score: 207
Period size: 39 Copynumber: 3.4 Consensus size: 39
67279634 GGACTAAGAT
67279644 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
* *
67279683 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
* *
67279722 CCGAAGGCATTTGTGCGAGTTATTAAA-TCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAG-C
67279762 CCGAAGGCATTTGTGC
1 CCGAAGGCATTTGTGC
67279778 AAGTTACTAT
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 68 0.78
40 19 0.22
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
Found at i:67279783 original size:40 final size:39
Alignment explanation
Indices: 67279591--67279814 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 39
67279581 TTGAATGCTG
* * *
67279591 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTATAA-A
* * *
67279631 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTATAAA
* * *
67279670 TTCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAA
67279710 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAA
* *
67279749 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TA-AA
*
67279790 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67279815 ACCGAGGAGC
Statistics
Matches: 160, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 68 0.43
40 82 0.51
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATAAA
Found at i:67279786 original size:79 final size:81
Alignment explanation
Indices: 67279591--67279814 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
67279581 TTGAATGCTG
* * * *
67279591 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAATATCCGGGCTAAGACCCGAAGGCAT
67279654 TTGTGCGAGATACAAAT
65 TTGTGCGAGATACAAAT
* *
67279671 TCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAATATCCGGGCTAAGACCCGAAGGCATT
* *
67279733 TGTGCGAGTTATTAAA-
66 TGTGCGAGATA-CAAAT
* * *
67279749 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAATATCCGGGCTAAGACCCGAAGGCATT
67279813 TG
66 TG
67279815 ACCGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
78 34 0.27
79 58 0.46
80 34 0.27
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACAAAT
Found at i:67279836 original size:79 final size:79
Alignment explanation
Indices: 67279591--67279847 Score: 258
Period size: 79 Copynumber: 3.3 Consensus size: 79
67279581 TTGAATGCTG
* * * *
67279591 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATATCCGGGCTAAG-TCCCGAAGGCAT
*
67279654 TTGTGCGAGATAC-AAA
64 TTGTGCGAG-GACTAAA
* *
67279670 TTCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCAT
* *
67279732 TTGTGCGAGTTATTAAA
64 TTGTGCGAG-GACTAAA
* *
67279749 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
** *
67279814 GACCGAGGAGCTATA
66 GTGCGAGGA-CTAAA
* *
67279829 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
67279848 TACGTGATTT
Statistics
Matches: 150, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
78 33 0.22
79 75 0.50
80 42 0.28
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGGACTAAA
Found at i:67285291 original size:27 final size:27
Alignment explanation
Indices: 67285239--67285317 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
67285229 GGAAATACAG
* * *
67285239 TACTGGTGACTATGTCAC-ATTCACTGT
1 TACTGGTGGCTATGCCACAATT-ACTGA
*
67285266 TGCTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGA
* *
67285293 TACTGGTGGCTTTGCCACACTTACT
1 TACTGGTGGCTATGCCACAATTACT
67285318 ATTTTGGCAG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 41 0.93
28 3 0.07
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGA
Found at i:67285548 original size:33 final size:33
Alignment explanation
Indices: 67285469--67285606 Score: 137
Period size: 33 Copynumber: 4.3 Consensus size: 33
67285459 ACTGCATTAC
* * *
67285469 ACTGTACTGATACTATATTGGGCTTAGG-CCAC
1 ACTGTACTGATACTATATAGGGCTAAGGCCCAG
67285501 AC--TA-T--TACTATATAGGGCTAAGGCCCAG
1 ACTGTACTGATACTATATAGGGCTAAGGCCCAG
*
67285529 ACTGTGCTGATACTATATAGGGCTAAGGCCCAG
1 ACTGTACTGATACTATATAGGGCTAAGGCCCAG
* * * *
67285562 ATTGTACTGATGCTGA-ATAGGGCTCAGGCCTAG
1 ACTGTACTGATACT-ATATAGGGCTAAGGCCCAG
67285595 ACTGTTACTGAT
1 ACTG-TACTGAT
67285607 CTAGGCTTAG
Statistics
Matches: 88, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
27 16 0.18
28 5 0.06
29 1 0.01
30 3 0.03
31 1 0.01
32 2 0.02
33 52 0.59
34 8 0.09
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (33 bp):
ACTGTACTGATACTATATAGGGCTAAGGCCCAG
Found at i:67290185 original size:17 final size:17
Alignment explanation
Indices: 67290150--67290187 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
67290140 TTTGGTTGAT
*
67290150 AGAGCTTGCAAAGTTAA
1 AGAGCTTGCAAAGTAAA
67290167 AGAGCTTAGCAAAG-AAA
1 AGAGCTT-GCAAAGTAAA
67290184 AGAG
1 AGAG
67290188 AAAATCTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.47, C:0.11, G:0.26, T:0.16
Consensus pattern (17 bp):
AGAGCTTGCAAAGTAAA
Found at i:67291185 original size:27 final size:28
Alignment explanation
Indices: 67291145--67291231 Score: 117
Period size: 27 Copynumber: 3.2 Consensus size: 28
67291135 TTGTGACAGT
* *
67291145 CACCAGATACAGATA-TTGTGGCAGAGC
1 CACCAGAAATAGATATTTGTGGCAGAGC
67291172 CACCAGAAATAGATATTTGTGGCAGAGC
1 CACCAGAAATAGATATTTGTGGCAGAGC
*
67291200 CACCAG--ATCAGATATTTGTGGTAGAGC
1 CACCAGAAAT-AGATATTTGTGGCAGAGC
67291227 CACCA
1 CACCA
67291232 AAACGCTTCC
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
26 2 0.04
27 35 0.64
28 18 0.33
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAAATAGATATTTGTGGCAGAGC
Found at i:67291200 original size:28 final size:27
Alignment explanation
Indices: 67291125--67291231 Score: 116
Period size: 27 Copynumber: 4.0 Consensus size: 27
67291115 CATGGCTACT
* *
67291125 AGAATAGATA-TTGT-G-ACAGTCACC
1 AGAATAGATATTTGTGGCAGAGCCACC
*
67291149 AGATACAGATA-TTGTGGCAGAGCCACC
1 AGA-ATAGATATTTGTGGCAGAGCCACC
67291176 AGAAATAGATATTTGTGGCAGAGCCACC
1 AG-AATAGATATTTGTGGCAGAGCCACC
*
67291204 AG-ATCAGATATTTGTGGTAGAGCCACC
1 AGAAT-AGATATTTGTGGCAGAGCCACC
67291231 A
1 A
67291232 AAACGCTTCC
Statistics
Matches: 72, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
24 3 0.04
25 10 0.14
26 3 0.04
27 37 0.51
28 19 0.26
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (27 bp):
AGAATAGATATTTGTGGCAGAGCCACC
Found at i:67293668 original size:39 final size:39
Alignment explanation
Indices: 67293547--67293716 Score: 220
Period size: 39 Copynumber: 4.3 Consensus size: 39
67293537 GCTCATCGTT
* **
67293547 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGT-ATCTCGCA
* * *
67293587 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGTATCTCGCA
67293627 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGTATCTCGCA
67293666 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCG-AATTAGTATCTCGCA
67293705 CAAATGCCTTCG
1 CAAATGCCTTCG
67293717 AATCTTAGTC
Statistics
Matches: 119, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
38 1 0.01
39 71 0.60
40 44 0.37
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTAGTATCTCGCA
Found at i:67293763 original size:118 final size:119
Alignment explanation
Indices: 67293547--67293766 Score: 256
Period size: 118 Copynumber: 1.9 Consensus size: 119
67293537 GCTCATCGTT
** *
67293547 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGAATATAGTAATTCGCACAAATGCCTTCGGAACTTAACCCGG
* *
67293612 ATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCAGAATTAGTATCTCGCA
66 ATTTAGTAACTAGCACAAATGCCTTCGGACTTAGCCCAGAATTAGTATCTCGCA
* **
67293666 CAAATGCCTTCGGG-CTTAGCCCGAA-ATTAGT-ATCTCGCACAAATGCCTTC-GAATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGAATA-TAGTAAT-TCGCACAAATGCCTTCGGAA-CTTAACC
*
67293727 CGGATATT-GTCACTTAGCAC-AA-GCCTTCAGGACTTAGCCC
63 CGGAT-TTAGTAAC-TAGCACAAATGCCTTC-GGACTTAGCCC
67293767 GGACATCATT
Statistics
Matches: 86, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
117 11 0.13
118 54 0.63
119 21 0.24
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGAATATAGTAATTCGCACAAATGCCTTCGGAACTTAACCCGG
ATTTAGTAACTAGCACAAATGCCTTCGGACTTAGCCCAGAATTAGTATCTCGCA
Found at i:67301620 original size:79 final size:80
Alignment explanation
Indices: 67301509--67301680 Score: 235
Period size: 79 Copynumber: 2.2 Consensus size: 80
67301499 GCTCCTCGTT
*
67301509 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT-TCGCACAAATGCCTTCAGGACTTAAC-CC
1 CAAATGCCTTCGGGACATAGCCCGGATATAGT-ATCTCGCACAAATGCCTTC-GGACTTAACTCC
*
67301572 GGATTTAGTAACTCGCA
64 GGAATTAGTAACTCGCA
* * *
67301589 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCTCCG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTATCTCGCACAAATGCCTTCGGACTTAACTCCG
*
67301652 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
67301668 CAAATGCCTTCGG
1 CAAATGCCTTCGG
67301681 ATCTTAGTCT
Statistics
Matches: 83, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
78 10 0.12
79 59 0.71
80 14 0.17
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTATCTCGCACAAATGCCTTCGGACTTAACTCCGG
AATTAGTAACTCGCA
Found at i:67301626 original size:39 final size:39
Alignment explanation
Indices: 67301509--67301680 Score: 231
Period size: 40 Copynumber: 4.3 Consensus size: 39
67301499 GCTCCTCGTT
* *
67301509 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
67301549 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGGCTTAGCCCGGAATTAGTATCTCGCA
67301589 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
67301628 CAAATGCCTTCGGGCTTAGCTCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGC-CCGGAATTAGTATCTCGCA
67301668 CAAATGCCTTCGG
1 CAAATGCCTTCGG
67301681 ATCTTAGTCT
Statistics
Matches: 120, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
39 45 0.38
40 71 0.59
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:67301716 original size:79 final size:79
Alignment explanation
Indices: 67301509--67301732 Score: 228
Period size: 79 Copynumber: 2.8 Consensus size: 79
67301499 GCTCCTCGTT
* * * * *
67301509 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCAGGACTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTAGCACAAATGCCTTCGGGACTTAGCCC
*
67301572 GGATTTAGTAACTCGCA
63 GGAATTAGTAACTCGCA
*
67301589 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCACAAATGCCTTCGGGACTTAGC-CCGG
*
67301653 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * *
67301668 CAAATGCCTTCGGATCTTAGTCTGGATATT-GTCA-CTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TAGCACAAATGCCTTCGGGACTTAGCC
67301729 CGGA
62 CGGA
67301733 CATCATTCAA
Statistics
Matches: 126, Mismatches: 10, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
78 7 0.06
79 75 0.60
80 35 0.28
81 9 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:67301726 original size:119 final size:119
Alignment explanation
Indices: 67301509--67301732 Score: 273
Period size: 119 Copynumber: 1.9 Consensus size: 119
67301499 GCTCCTCGTT
*
67301509 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCAGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCAGGACTTAACCCGG
*
67301574 ATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
66 ATTTAGTAACTAGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* **
67301628 CAAATGCCTTCGGG-CTTAGCTCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGACATAGC-CCGGATA-TAGTAAT-TCGCACAAATGCCTTCAGGA-CTTAAC
* *
67301689 CTGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCGGA
62 CCGGAT-TTAGTAAC-TAGCACAAATGCCTTCGGG-CTTAGCCCGGA
67301733 CATCATTCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
118 20 0.22
119 64 0.70
120 7 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCAGGACTTAACCCGG
ATTTAGTAACTAGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:67303576 original size:24 final size:25
Alignment explanation
Indices: 67303535--67303581 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
67303525 CTTTGGTCAG
67303535 AGAAGAAAAGAAGGAGAAAAGAAAT
1 AGAAGAAAAGAAGGAGAAAAGAAAT
* *
67303560 AGAAGAAGAG-AGGAGAAGAGAA
1 AGAAGAAAAGAAGGAGAAAAGAA
67303582 GGAAGAAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.64, C:0.00, G:0.34, T:0.02
Consensus pattern (25 bp):
AGAAGAAAAGAAGGAGAAAAGAAAT
Found at i:67321969 original size:42 final size:42
Alignment explanation
Indices: 67321922--67322082 Score: 153
Period size: 42 Copynumber: 3.7 Consensus size: 42
67321912 GGGATCTTAC
*
67321922 ATCGATGCCATATCCCAGATATGGTCTTATACGAAATCTCAT
1 ATCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT
* * ** * *
67321964 TTCGATGCCATGTCCCAGACGTGGTCTTACACGAATTTTCAT
1 ATCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT
* * * *
67322006 ATCAACGCCATATCCCAGATATGGTCTTACATGATAA-CACAT
1 ATCGATGCCATATCCCAGATATGGTCTTACACGA-AATCTCAT
67322048 ACCGATGCCGATGCCATATCCCAGATATGGTCTTA
1 ----AT--CGATGCCATATCCCAGATATGGTCTTA
67322083 TACGGGATAT
Statistics
Matches: 93, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 65 0.70
43 1 0.01
46 2 0.02
48 25 0.27
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
ATCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT
Found at i:67322054 original size:84 final size:84
Alignment explanation
Indices: 67321887--67322056 Score: 200
Period size: 84 Copynumber: 2.0 Consensus size: 84
67321877 GATGCCAAGA
* * * * * *
67321887 CCATGTTCCAGACGTGGTCTTACATGGGATCTTACATCGATGCCATATCCCAGATATGGTCTTAT
1 CCATGTCCCAGACGTGGTCTTACATCGAATCTTACATCAACGCCATATCCCAGATATGGTCTTAC
* **
67321952 ACGAAATCTCATTTCGATG
66 ACGAAATCACATACCGATG
* *
67321971 CCATGTCCCAGACGTGGTCTTACA-CGAATTTTCATATCAACGCCATATCCCAGATATGGTCTTA
1 CCATGTCCCAGACGTGGTCTTACATCGAATCTT-ACATCAACGCCATATCCCAGATATGGTCTTA
*
67322035 CATGATAA-CACATACCGATG
65 CACGA-AATCACATACCGATG
67322055 CC
1 CC
67322057 GATGCCATAT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
83 5 0.07
84 65 0.90
85 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (84 bp):
CCATGTCCCAGACGTGGTCTTACATCGAATCTTACATCAACGCCATATCCCAGATATGGTCTTAC
ACGAAATCACATACCGATG
Found at i:67326653 original size:94 final size:93
Alignment explanation
Indices: 67326510--67326680 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 93
67326500 CGACTCTTAG
* *
67326510 CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCCGATGCATGTCTCAAAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAAAC
67326575 ATATCTTACACTAATACTCATCTCTACA
66 ATATCTTACACTAATACTCATCTCTACA
** *
67326603 CCGATGCCATGTCCCAGACATGGTCTTACGTTGGC-ACTCATAAT-GTGGCCGATGCATGTCCCA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTA-TCATAATCGAGGCCGATGCATGTCCCA
* *
67326666 GACATGTCTTACACT
63 AACATATCTTACACT
67326681 GGCACACAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
93 6 0.09
94 45 0.66
95 17 0.25
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (93 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAAAC
ATATCTTACACTAATACTCATCTCTACA
Found at i:67334041 original size:47 final size:47
Alignment explanation
Indices: 67333983--67334159 Score: 243
Period size: 47 Copynumber: 3.8 Consensus size: 47
67333973 AAGACTCTTA
*
67333983 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCATCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCATCGAG
* * *
67334030 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTTATC-TCCAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAG
* * *
67334076 GCCGATGCCATGTCCCAGACATGGTCTTACACTTGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCATCGAG
67334124 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
67334160 ACAAAAAATC
Statistics
Matches: 115, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
46 25 0.22
47 65 0.57
48 24 0.21
49 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAG
Found at i:67334135 original size:94 final size:93
Alignment explanation
Indices: 67333983--67334159 Score: 277
Period size: 94 Copynumber: 1.9 Consensus size: 93
67333973 AAGACTCTTA
*
67333983 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCATGTCCCAGA
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGA
67334048 CATGTCTTACACTGGCACTTATCTCCAT
66 CATGTCTTACACTGGCACTTATCTCCAT
* * *
67334076 GCCGATGCCATGTCCCAGACATGGTCTTACACTTGC-ACTCATAAT-GTGGCCGATGCATGTCCC
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTA-TCATAATCGAGGCCGATGCATGTCCC
67334139 AGACATGTCTTACACTGGCAC
63 AGACATGTCTTACACTGGCAC
67334160 ACAAAAAATC
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
93 7 0.09
94 52 0.68
95 18 0.23
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (93 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTGGCACTTATCTCCAT
Found at i:67351021 original size:38 final size:38
Alignment explanation
Indices: 67350978--67351139 Score: 126
Period size: 38 Copynumber: 4.0 Consensus size: 38
67350968 TTTCAAATTA
*
67350978 ACATGTACAACCGTGGCATATCCACTTATCACCACGTT
1 ACATGTACAACCGTGGCATATCCACTTAGCACCACGTT
** * *
67351016 ACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTACAACCGTGGCATATCCACTTAGCACCACG-T--T
* * * *
67351057 GAATCAATATATGTAACCGTGTCATATCCACTTAGCACCACATT
1 --A-C-ATGTA--CAACCGTGGCATATCCACTTAGCACCACGTT
** * *
67351101 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
1 ACATGTACAACCGTGGCATATCCACTTAGCACCACGTT
67351139 A
1 A
67351140 ATGAATCAAT
Statistics
Matches: 98, Mismatches: 17, Indels: 18
0.74 0.13 0.14
Matches are distributed among these distances:
38 59 0.60
39 1 0.01
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 1 0.01
47 25 0.26
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (38 bp):
ACATGTACAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:67351084 original size:85 final size:85
Alignment explanation
Indices: 67350986--67351174 Score: 324
Period size: 85 Copynumber: 2.2 Consensus size: 85
67350976 TAACATGTAC
* * **
67350986 AACCGTGGCATATCCACTTATCACCACGTTACATGTTTAACTGTGGTATATCCACTTAGCACCAC
1 AACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCATGGTATATCCACTTAGCACCAC
67351051 GTTAATGAATCAATATATGT
66 GTTAATGAATCAATATATGT
*
67351071 AACCGTGTCATATCCACTTAGCACCACATTACATGTTTAACCATGGTATATCCACTTAGCACCAC
1 AACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCATGGTATATCCACTTAGCACCAC
67351136 GTTAATGAATCAATATATGT
66 GTTAATGAATCAATATATGT
*
67351156 AAACGTGGCATATCCACTT
1 AACCGTGGCATATCCACTT
67351175 TGTAACACCC
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (85 bp):
AACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCATGGTATATCCACTTAGCACCAC
GTTAATGAATCAATATATGT
Found at i:67352589 original size:40 final size:40
Alignment explanation
Indices: 67352552--67352777 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
67352542 GCTACTCGTT
* *
67352552 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
67352592 CAAATGCCTGCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
67352632 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
67352672 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
67352712 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
67352753 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
67352778 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:67360612 original size:39 final size:40
Alignment explanation
Indices: 67360522--67360784 Score: 317
Period size: 40 Copynumber: 6.7 Consensus size: 40
67360512 GCTACTCGTT
*
67360522 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
67360562 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-CGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
67360601 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
67360641 CAAATGCCTTC-GGATCTTAGTCCGGA-TTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* *
67360680 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
67360720 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67360761 CAAA-G-CTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67360785 CATCATTCAA
Statistics
Matches: 206, Mismatches: 11, Indels: 13
0.90 0.05 0.06
Matches are distributed among these distances:
39 94 0.46
40 103 0.50
41 9 0.04
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67360625 original size:79 final size:80
Alignment explanation
Indices: 67360489--67360784 Score: 317
Period size: 79 Copynumber: 3.8 Consensus size: 80
67360479 AAATCACGTA
* ** *
67360489 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGGGATCTTAACCCGGAT-TAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-
67360550 TAGTAACTCGCACAAATG
63 TAGTAACTCGCACAAATG
*
67360568 CCTTCGGGA-CTTAACCCGGATTTAGTAAC-CGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 CCTTCGGGATCTTAACCCGGA-TTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
67360631 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
** * *
67360647 CCTTC-GGATCTTAGTCCGGATTAGTAACTCGTACAAATGCCTTC-GGATCTTAGTCCGGATTTA
1 CCTTCGGGATCTTAACCCGGATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTA
*
67360710 GTAACTCGTACAAATG
65 GTAACTCGCACAAATG
** * * *
67360726 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G-CTTCGGGACTTAGCCCGGA
1 CCTTCGGGATCTTAACCCGGAT-TAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
67360785 CATCATTCAA
Statistics
Matches: 190, Mismatches: 16, Indels: 22
0.83 0.07 0.10
Matches are distributed among these distances:
78 14 0.07
79 147 0.77
80 21 0.11
81 8 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
CCTTCGGGATCTTAACCCGGATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAG
TAACTCGCACAAATG
Found at i:67367109 original size:45 final size:45
Alignment explanation
Indices: 67367062--67367309 Score: 390
Period size: 45 Copynumber: 5.5 Consensus size: 45
67367052 ATCATTTCAT
* *
67367062 CGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCAT
1 CGGCATCATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATCTCAC
* * *
67367107 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTTAC
1 CGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
* *
67367152 CGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATAGTATTTCAC
1 CGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
*
67367197 CGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCAC
1 CGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
* *
67367242 TGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCAC
1 CGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
67367287 CGGCATCATAGCCTGCTAGGCTC
1 CGGCATCATAGCCTGCTAGGCTC
67367310 GAAGTCCGAT
Statistics
Matches: 187, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
44 3 0.02
45 184 0.98
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (45 bp):
CGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
Found at i:67368328 original size:37 final size:37
Alignment explanation
Indices: 67368274--67368374 Score: 193
Period size: 37 Copynumber: 2.7 Consensus size: 37
67368264 GCTCAGACGA
*
67368274 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
67368311 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
67368348 AATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
67368375 TAGAGCTCGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:67368571 original size:47 final size:47
Alignment explanation
Indices: 67368493--67369144 Score: 1052
Period size: 47 Copynumber: 13.7 Consensus size: 47
67368483 CCCTTCGGGA
* * * * * *
67368493 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67368540 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67368587 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67368634 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67368681 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67368728 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67368775 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67368822 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67368869 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67368918 CTTATCACTTATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67368965 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67369014 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67369061 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67369110 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
67369145 AGAATCCTAA
Statistics
Matches: 569, Mismatches: 30, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 437 0.77
49 132 0.23
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67373339 original size:26 final size:27
Alignment explanation
Indices: 67373287--67373339 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
67373277 TTGAATTCTG
* *
67373287 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
67373314 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
67373340 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:67377291 original size:27 final size:26
Alignment explanation
Indices: 67377260--67377437 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
67377250 TAAATTGTAC
67377260 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
67377287 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
67377313 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
67377341 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
67377369 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
67377396 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
67377423 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67377438 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:67377376 original size:82 final size:81
Alignment explanation
Indices: 67377261--67377416 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
67377251 AAATTGTACA
* * *
67377261 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
67377325 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67377342 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
67377407 TGCGAGTTGA
65 TGCGAATTGA
67377417 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67377428 original size:82 final size:81
Alignment explanation
Indices: 67377257--67377437 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
67377247 GATTAAATTG
* * *
67377257 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67377322 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67377338 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67377402 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67377420 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67377438 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67383956 original size:47 final size:47
Alignment explanation
Indices: 67383898--67384109 Score: 244
Period size: 47 Copynumber: 4.7 Consensus size: 47
67383888 TTAACATGTA
*
67383898 TAACCGTGGCATATCCACTTAGGACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
67383945 TAACCGTGGCATATCCATTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
67383983 TAACCGTGGTATATCCACTTAGCACCACATTAATGAATTAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * *
67384030 TAACCATGGCATATCCACTTAGCACCATGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* *
67384078 TAATCGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA
67384110 CACGTATAAC
Statistics
Matches: 136, Mismatches: 19, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
38 26 0.19
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 1 0.01
45 3 0.02
46 2 0.01
47 55 0.40
48 40 0.29
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:67384034 original size:85 final size:85
Alignment explanation
Indices: 67383891--67384068 Score: 284
Period size: 85 Copynumber: 2.1 Consensus size: 85
67383881 TTTCAAATTA
* * *
67383891 ACATGTATAACCGTGGCATATCCACTTAGGACCACGTTAATGAATCAATATATGTAACCGTGGCA
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCATGGCA
*
67383956 TATCCATTTAGCACCACGTT
66 TATCCACTTAGCACCACGTT
* * *
67383976 ACATGTTTAACCGTGGTATATCCACTTAGCACCACATTAATGAATTAATATATGTAACCATGGCA
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCATGGCA
*
67384041 TATCCACTTAGCACCATGTT
66 TATCCACTTAGCACCACGTT
67384061 ACATGTAT
1 ACATGTAT
67384069 CAATATGTGT
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (85 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCATGGCA
TATCCACTTAGCACCACGTT
Found at i:67384093 original size:48 final size:48
Alignment explanation
Indices: 67383978--67384116 Score: 181
Period size: 48 Copynumber: 2.9 Consensus size: 48
67383968 ACCACGTTAC
* * * *
67383978 ATGTTTAACCGTGGTATATCCACTTAGCACCACATTA-ATGAATTAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * * *
67384025 ATATGTAACCATGGCATATCCACTTAGCACCATGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
67384073 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
67384117 AACCGTGGTA
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 31 0.40
48 46 0.60
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:67384103 original size:133 final size:132
Alignment explanation
Indices: 67383898--67384143 Score: 384
Period size: 133 Copynumber: 1.9 Consensus size: 132
67383888 TTAACATGTA
* * *
67383898 TAACCGTGGCATATCCACTTAGGACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAT
1 TAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
* *
67383963 TTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACATTAATGAATTAATATA
66 TTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACATTAATGAATTAATATA
67384028 TG
131 TG
* * * * *
67384030 TAACCATGGCATATCCACTTAGCACCATGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCATGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
*
67384095 CTTAGCACCACGTTACACGTATAACCGTGGTATATTCACTTAGCACCAC
65 CTTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCAC
67384144 GTTTTTTCAT
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
132 29 0.28
133 73 0.72
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (132 bp):
TAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACATTAATGAATTAATATA
TG
Found at i:67385117 original size:27 final size:27
Alignment explanation
Indices: 67385077--67385235 Score: 149
Period size: 27 Copynumber: 5.9 Consensus size: 27
67385067 AGATGTTACA
* *
67385077 TAAAATGACTGTTTTGCCCTTGTGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* *
67385104 TGAAATGATTGTTTTTCCCTTATGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* * * *
67385131 TAAAATAAATATTATGCCCTTATGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* * *
67385158 TAAAATGGTTGTTTTGCCTTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* * *
67385185 TAAAATGAATATTTTGCCCTT-TTATGG
1 TAAAATGATTGTTTTGCCCTTATGA-GG
* * *
67385212 TAAGATGATTGTTTTACCCCTATG
1 TAAAATGATTGTTTTGCCCTTATG
67385236 TGATGTATGC
Statistics
Matches: 101, Mismatches: 29, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATGAGG
Found at i:67385236 original size:54 final size:53
Alignment explanation
Indices: 67385077--67385237 Score: 171
Period size: 54 Copynumber: 3.0 Consensus size: 53
67385067 AGATGTTACA
* * * * *
67385077 TAAAATGACTGTTTTGCCCTTGTGAGGTGAAATGATTGTTTTTCCCTTATGAGG
1 TAAAATGAATATTTTGCCCTTATGAGGT-AAATGATTGTTTTACCCTTATGTGG
* * * * *
67385131 TAAAATAAATATTATGCCCTTATGAGGTAAAATGGTTGTTTTGCCTTTATGTGG
1 TAAAATGAATATTTTGCCCTTATGAGGT-AAATGATTGTTTTACCCTTATGTGG
* *
67385185 TAAAATGAATATTTTGCCCTT-TTATGGTAAGATGATTGTTTTACCCCTATGTG
1 TAAAATGAATATTTTGCCCTTATGA-GGTAA-ATGATTGTTTTACCCTTATGTG
67385238 ATGTATGCTT
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
53 4 0.05
54 84 0.95
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (53 bp):
TAAAATGAATATTTTGCCCTTATGAGGTAAATGATTGTTTTACCCTTATGTGG
Found at i:67392308 original size:27 final size:27
Alignment explanation
Indices: 67392266--67392378 Score: 140
Period size: 27 Copynumber: 4.2 Consensus size: 27
67392256 GAGGAAGCGT
*
67392266 TCTGGTGGCTCAGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
67392293 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
* *
67392321 TCTGGTGGCTTTGCCACAGTATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
67392348 TCTGGTGACTCTGTCACAATATCTGT-
1 TCTGGTGGCTCTGCCACAATATCTGTA
67392374 TCTGG
1 TCTGG
67392379 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.72
28 16 0.21
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:67392374 original size:54 final size:54
Alignment explanation
Indices: 67392264--67392378 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 54
67392254 TGGAGGAAGC
*
67392264 GTTCTGGTGGCTCAGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCAGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
** * *
67392318 GTTTCTGGTGGCTTTGCCAC-AGTATCTGTATCTGGTGACTCTGTCAC-AATATCT
1 G-TTCTGGTGGCTCAGCCACAAATATCTG-ATCTGGTGACTCTGCCACAAATATCT
67392372 GTTCTGG
1 GTTCTGG
67392379 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
53 6 0.11
54 16 0.30
55 32 0.59
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (54 bp):
GTTCTGGTGGCTCAGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
Found at i:67397597 original size:40 final size:40
Alignment explanation
Indices: 67397506--67397689 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
67397496 TCCTCGTTCA
* * * * *
67397506 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
67397545 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
67397585 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
67397625 AATGCCTTCGGGACTTAACCCGGATTTAGA-ATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTA-ATAACTCGCACG
* *
67397665 AAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGGA-CTTAACCCGGAT
67397690 ATATTCACTT
Statistics
Matches: 128, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.27
40 92 0.72
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:67397712 original size:80 final size:80
Alignment explanation
Indices: 67397548--67397728 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
67397538 CTCACACCAT
* * * *
67397548 GCCTTCGGGACGTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
67397613 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* *
67397628 GCCTTCGGGACTTAACCCGGATTTAGA-ATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATA
1 GCCTTCGGGACTTAACCCGGATTTA-ACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATA
* * *
67397691 TATTCACTTAGTAC-AAA
64 TAATAAC-TAGCACGAAA
*
67397708 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
67397729 CAGCATTCAA
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
79 3 0.03
80 78 0.91
81 5 0.06
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:67403971 original size:78 final size:80
Alignment explanation
Indices: 67403836--67404058 Score: 235
Period size: 79 Copynumber: 2.8 Consensus size: 80
67403826 TTGAATGATG
* * * * * * *
67403836 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCAGACTAAGAT-CCGAAGGCAT
1 TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
67403898 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
67403915 TCCGAGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGAGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
67403976 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * * *
67403993 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
67404058 G
66 G
67404059 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
78 45 0.37
79 54 0.44
80 22 0.18
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:67404023 original size:40 final size:40
Alignment explanation
Indices: 67403836--67404058 Score: 239
Period size: 39 Copynumber: 5.7 Consensus size: 40
67403826 TTGAATGATG
*
67403836 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* * *
67403875 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
67403915 TCCGAGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
67403954 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
67403993 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
67404034 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67404059 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 16, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
39 90 0.57
40 56 0.35
41 12 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:67404091 original size:79 final size:78
Alignment explanation
Indices: 67403888--67404091 Score: 193
Period size: 79 Copynumber: 2.6 Consensus size: 78
67403878 AGACTAAGAT
** * * * *
67403888 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGAGCTAAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTA
*
67403952 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
** *
67403966 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCTGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCC-GAAGGCATTTGTGCGAGA-TACT
*
67404030 -ATAACCGGGCTATGTC
64 AAT-ACCGGGCTAAG-C
* *
67404046 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTT-AAGTCCGAAGG
67404092 TACGTGATTT
Statistics
Matches: 108, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 38 0.35
79 39 0.36
80 30 0.28
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:67411930 original size:34 final size:36
Alignment explanation
Indices: 67411838--67411956 Score: 140
Period size: 36 Copynumber: 3.3 Consensus size: 36
67411828 GACTAAGATT
67411838 CGAAGGCATTTGTGCGAGATA-TAATTCGGGCTAAGC
1 CGAAGGCATTTGTGCGAG-TACTAATTCGGGCTAAGC
*
67411874 CGAAGGCATTTGTGCGAGTACTAATTCTGG-T-AGC
1 CGAAGGCATTTGTGCGAGTACTAATTCGGGCTAAGC
* *
67411908 CGAA-GCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CGAAGGCATTTGTGCGAG-TACT-AATTCGGGCTAAG-C
67411946 CGAA-GCATTTG
1 CGAAGGCATTTG
67411957 CGATTACTAT
Statistics
Matches: 74, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
33 13 0.18
34 11 0.15
35 9 0.12
36 27 0.36
37 2 0.03
38 12 0.16
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (36 bp):
CGAAGGCATTTGTGCGAGTACTAATTCGGGCTAAGC
Found at i:67411973 original size:35 final size:36
Alignment explanation
Indices: 67411907--67411991 Score: 102
Period size: 35 Copynumber: 2.3 Consensus size: 36
67411897 ATTCTGGTAG
*
67411907 CCGAAGCATTTGTGCGAGTTACTAAATCCGGGTTAAGT
1 CCGAAGCA-TT-TGCGAGTTACTAAATCCGGGCTAAGT
*
67411945 CCGAAGCATTTGCGA-TTACTATAA-CCGGGCTATGT
1 CCGAAGCATTTGCGAGTTACTA-AATCCGGGCTAAGT
*
67411980 CCGAAGGATTTG
1 CCGAAGCATTTG
67411992 AACGATGGCT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
35 26 0.60
36 7 0.16
37 2 0.05
38 8 0.19
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (36 bp):
CCGAAGCATTTGCGAGTTACTAAATCCGGGCTAAGT
Found at i:67428731 original size:47 final size:46
Alignment explanation
Indices: 67428623--67428787 Score: 145
Period size: 46 Copynumber: 3.5 Consensus size: 46
67428613 CAAGGCTAAT
* * * * * * **
67428623 GCATGTCCCGAATATGTCTTACTCTGGCACTCATAATATGGTTGAA
1 GCATGTCCCAAACATGTCTTACACTAGCCCTCATAATGTGGCCGAA
* * * *
67428669 GCATGT-CCAAGACATGTCTTACACTAGCCCTCGT-CTGGTTGCCGAT
1 GCATGTCCCAA-ACATGTCTTACACTAGCCCTCATAAT-GTGGCCGAA
* * *
67428715 GCCATGTCCCATACATGGTCTTACACTGGCTCTCATAATGTGGCCGAA
1 G-CATGTCCCAAACAT-GTCTTACACTAGCCCTCATAATGTGGCCGAA
67428763 GCATGTCCCAAACATGTCTTACACT
1 GCATGTCCCAAACATGTCTTACACT
67428788 GGTGCAGAAA
Statistics
Matches: 93, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
45 4 0.04
46 39 0.42
47 22 0.24
48 27 0.29
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GCATGTCCCAAACATGTCTTACACTAGCCCTCATAATGTGGCCGAA
Found at i:67429166 original size:30 final size:30
Alignment explanation
Indices: 67429130--67429190 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
67429120 ATTCACAACT
* *
67429130 TTGGCAAAATGACCATTTTGCCCCTAGGCC
1 TTGGCAAAATAACCATTTTACCCCTAGGCC
*
67429160 TTGGCAAAATAACCATTTTACCCCTATGCC
1 TTGGCAAAATAACCATTTTACCCCTAGGCC
67429190 T
1 T
67429191 GAAAATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (30 bp):
TTGGCAAAATAACCATTTTACCCCTAGGCC
Found at i:67447338 original size:66 final size:66
Alignment explanation
Indices: 67447268--67447397 Score: 188
Period size: 66 Copynumber: 2.0 Consensus size: 66
67447258 TAACCCCTTA
* * *
67447268 AATCAACAACCCTTTAAACCCCAGACCCTAAATCTCTAATCATAAACCCCTAAAACTATAAACAC
1 AATCAACAACCCTTTAAACACCAGACCCTAAATATCAAATCATAAACCCCTAAAACTATAAACAC
67447333 T
66 T
* * * * *
67447334 AATCAATAACTCTTTAAACACCAGACCCTAAATATCAAATCATAAACTCTTAAAACTCTAAACA
1 AATCAACAACCCTTTAAACACCAGACCCTAAATATCAAATCATAAACCCCTAAAACTATAAACA
67447398 ATAAACCTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.46, C:0.29, G:0.02, T:0.23
Consensus pattern (66 bp):
AATCAACAACCCTTTAAACACCAGACCCTAAATATCAAATCATAAACCCCTAAAACTATAAACAC
T
Found at i:67447481 original size:22 final size:23
Alignment explanation
Indices: 67447441--67447493 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
67447431 TCTCAAATCA
* *
67447441 TAAACCCTTAAAACTCCAACCCC
1 TAAACCCCTAAAACCCCAACCCC
*
67447464 TAAACCCCT-AAACCCCAACCCT
1 TAAACCCCTAAAACCCCAACCCC
67447486 TAAACCCC
1 TAAACCCC
67447494 AAGCCCTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 19 0.70
23 8 0.30
ACGTcount: A:0.38, C:0.47, G:0.00, T:0.15
Consensus pattern (23 bp):
TAAACCCCTAAAACCCCAACCCC
Found at i:67447483 original size:14 final size:14
Alignment explanation
Indices: 67447466--67447503 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
67447456 CCAACCCCTA
67447466 AACCCCTAAACCCC
1 AACCCCTAAACCCC
*
67447480 AACCCTTAAACCCC
1 AACCCCTAAACCCC
*
67447494 AAGCCCTAAA
1 AACCCCTAAA
67447504 ACAATGTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.39, C:0.47, G:0.03, T:0.11
Consensus pattern (14 bp):
AACCCCTAAACCCC
Found at i:67447485 original size:65 final size:66
Alignment explanation
Indices: 67447361--67447490 Score: 156
Period size: 65 Copynumber: 2.0 Consensus size: 66
67447351 ACACCAGACC
* * * *
67447361 CTAAATATCAAATCATAAACTCTTAAAACTCTAAACAATAAACCTTAATCCCAACACCC-TAAAC
1 CTAAATATCAAATCATAAACCCTTAAAACTCCAAACAATAAACCCTAAACCCAACACCCTTAAAC
67447425 T
66 T
* * ** *
67447426 CTAAATCTCAAATCATAAACCCTTAAAACTCCAACCCCTAAACCCCTAAACCCCA-ACCCTTAAA
1 CTAAATATCAAATCATAAACCCTTAAAACTCCAAACAATAAA-CCCTAAACCCAACACCCTTAAA
67447490 C
65 C
67447491 CCCAAGCCCT
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
65 40 0.74
66 14 0.26
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.22
Consensus pattern (66 bp):
CTAAATATCAAATCATAAACCCTTAAAACTCCAAACAATAAACCCTAAACCCAACACCCTTAAAC
T
Found at i:67447858 original size:7 final size:8
Alignment explanation
Indices: 67447788--67447856 Score: 124
Period size: 8 Copynumber: 8.9 Consensus size: 8
67447778 TCAAAAAATA
67447788 AAAAATTT
1 AAAAATTT
67447796 -AAAATTT
1 AAAAATTT
67447803 -AAAATTT
1 AAAAATTT
67447810 AAAAATTT
1 AAAAATTT
67447818 AAAAATTT
1 AAAAATTT
67447826 AAAAATTT
1 AAAAATTT
67447834 AAAAATTT
1 AAAAATTT
67447842 AAAAATTT
1 AAAAATTT
67447850 AAAAATT
1 AAAAATT
67447857 AATATTTTAG
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
7 14 0.23
8 46 0.77
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
AAAAATTT
Found at i:67450506 original size:28 final size:27
Alignment explanation
Indices: 67450449--67450600 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
67450439 TAAATTGTGC
*
67450449 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
67450476 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
67450504 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
67450531 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
67450559 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
67450586 AGCACTGAGTATGCG
1 AGCACTAAGTGTGCG
67450601 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 65 0.55
28 53 0.45
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:67450513 original size:55 final size:55
Alignment explanation
Indices: 67450449--67450600 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
67450439 TAAATTGTGC
*
67450449 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
67450504 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
67450559 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTATGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
67450601 GACTTAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:67452465 original size:7 final size:7
Alignment explanation
Indices: 67452453--67452487 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
67452443 ATTTGTGCCT
67452453 TAACTCA
1 TAACTCA
67452460 TAACTCA
1 TAACTCA
67452467 TAACTCA
1 TAACTCA
*
67452474 TAACTTA
1 TAACTCA
67452481 TAACTCA
1 TAACTCA
67452488 CAATAGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (7 bp):
TAACTCA
Found at i:67453919 original size:23 final size:23
Alignment explanation
Indices: 67453892--67454188 Score: 203
Period size: 23 Copynumber: 12.9 Consensus size: 23
67453882 TGGCTGCTGT
*
67453892 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
*
67453915 TGTTTGAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
*
67453938 TGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* *
67453961 TGTTTAAGTACTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* *** *
67453984 TGTTGAAGCACTGCAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
** *
67454007 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGTAAATTGAAG
*
67454029 ATGTTT-TAT-CATTGT-AATTG-AG
1 -TGTTTAAATGC--TGTAAATTGAAG
** * *
67454051 TTGTACAAATGTTGTTAATTG-AG
1 -TGTTTAAATGCTGTAAATTGAAG
* *
67454074 ATG-TTAAAGTGCTGCAAATTGAAA
1 -TGTTTAAA-TGCTGTAAATTGAAG
*
67454098 TGTTTAAATACTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
** *
67454121 TACTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* * **
67454144 TGTTTTAAGTACTACAAATTGAAG
1 TG-TTTAAATGCTGTAAATTGAAG
** *
67454168 TGTTTAGTTGCTGAAAATTGA
1 TGTTTAAATGCTGTAAATTGA
67454189 GATGTTTCAT
Statistics
Matches: 214, Mismatches: 50, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
21 1 0.00
22 19 0.09
23 171 0.80
24 23 0.11
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.39
Consensus pattern (23 bp):
TGTTTAAATGCTGTAAATTGAAG
Found at i:67453981 original size:69 final size:69
Alignment explanation
Indices: 67453892--67454173 Score: 225
Period size: 69 Copynumber: 4.1 Consensus size: 69
67453882 TGGCTGCTGT
* * * * *
67453892 TGTTTAAATGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATT
1 TGTTTAAATACTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATT
67453957 GAAG
66 GAAG
* * *** * ** *
67453961 TGTTTAAGTACTGTAAATTGAAGTGTTGAAGCACTGCAAATTGAAGTGTTTAGTTGCTGGAAATT
1 TGTTTAAATACTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATT
67454026 G-AG
66 GAAG
* * ** * *
67454029 ATGTTT-TATCATTGT-AATTG-AGTTGTACAAATGTTGTTAATTG-AGATG-TTAAAGTGCTGC
1 -TGTTTAAAT-ACTGTAAATTGAAG-TGTTTAAATGCTGTAAATTGAAG-TGTTTAAA-TGCTGC
*
67454089 AAATTGAAA
61 AAATTGAAG
** * * * *
67454098 TGTTTAAATACTGTAAATTGAAGTACTTAAATGTTGTAAATTGAAGTGTTTTAAGTACTACAAAT
1 TGTTTAAATACTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG-TTTAAATGCTGCAAAT
67454163 TGAAG
65 TGAAG
67454168 TGTTTA
1 TGTTTA
67454174 GTTGCTGAAA
Statistics
Matches: 162, Mismatches: 39, Indels: 23
0.72 0.17 0.10
Matches are distributed among these distances:
67 7 0.04
68 42 0.26
69 87 0.54
70 22 0.14
71 4 0.02
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.39
Consensus pattern (69 bp):
TGTTTAAATACTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATT
GAAG
Found at i:67454139 original size:114 final size:114
Alignment explanation
Indices: 67453895--67454150 Score: 252
Period size: 114 Copynumber: 2.2 Consensus size: 114
67453885 CTGCTGTTGT
* * **
67453895 TTAAATGCTGCAAATTGAAGTGTTTGA--ATGCTGTAAATTGAAG-TGTTTAAATGTTGTAAATT
1 TTAAATGCTGGAAATTGAAGTGTTTTATCAT--TGT-AATTG-AGTTGTACAAATGTTGTAAATT
* * * * **
67453957 GAAGTGTTTAAGTACTGTAAATTGAAGTGTTGAAGCACTGCAAATTGAAGTGT
62 GAAGTGTTAAAGTACTGCAAATTGAAATGTTGAAACACTGCAAATTGAAGTAC
** *
67454010 TTAGTTGCTGGAAATTG-AGATGTTTTATCATTGTAATTGAGTTGTACAAATGTTGTTAATTG-A
1 TTAAATGCTGGAAATTGAAG-TGTTTTATCATTGTAATTGAGTTGTACAAATGTTGTAAATTGAA
* * * *
67454073 GATGTTAAAGTGCTGCAAATTGAAATGTTTAAATACTGTAAATTGAAGTAC
65 G-TGTTAAAGTACTGCAAATTGAAATGTTGAAACACTGCAAATTGAAGTAC
* *
67454124 TTAAATGTTGTAAATTGAAGTGTTTTA
1 TTAAATGCTGGAAATTGAAGTGTTTTA
67454151 AGTACTACAA
Statistics
Matches: 114, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
113 4 0.04
114 83 0.73
115 25 0.22
117 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.39
Consensus pattern (114 bp):
TTAAATGCTGGAAATTGAAGTGTTTTATCATTGTAATTGAGTTGTACAAATGTTGTAAATTGAAG
TGTTAAAGTACTGCAAATTGAAATGTTGAAACACTGCAAATTGAAGTAC
Found at i:67454187 original size:70 final size:69
Alignment explanation
Indices: 67454057--67454188 Score: 158
Period size: 70 Copynumber: 1.9 Consensus size: 69
67454047 TGAGTTGTAC
* * * *
67454057 AAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAATGTTTAAATACTGTAAATTGAAGT
1 AAATGTTGTAAATTGAGATGTTAAAGTACTACAAATTGAAATGTTTAAATACTGAAAATTGAAGT
67454122 ACTT
66 ACTT
* * ** *
67454126 AAATGTTGTAAATTGA-AGTGTTTTAAGTACTACAAATTGAAGTGTTTAGTTGCTGAAAATTGA
1 AAATGTTGTAAATTGAGA-TG-TTAAAGTACTACAAATTGAAATGTTTAAATACTGAAAATTGA
67454189 GATGTTTCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
68 1 0.02
69 17 0.33
70 34 0.65
ACGTcount: A:0.37, C:0.05, G:0.20, T:0.38
Consensus pattern (69 bp):
AAATGTTGTAAATTGAGATGTTAAAGTACTACAAATTGAAATGTTTAAATACTGAAAATTGAAGT
ACTT
Found at i:67454671 original size:19 final size:19
Alignment explanation
Indices: 67454648--67454694 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
67454638 ATTTAATCTA
*
67454648 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
67454666 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
67454686 ATTTTTATT
1 ATTTTTATT
67454695 TTAATAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:67454696 original size:31 final size:30
Alignment explanation
Indices: 67454615--67454706 Score: 91
Period size: 31 Copynumber: 3.0 Consensus size: 30
67454605 AAAATACTTG
*
67454615 CTATA-TTTTATTTATATCTTTATATTTAAT
1 CTATATTTTTATTTTTAT-TTTATATTTAAT
*
67454645 CTA-ATTTTTATTATTTATTTTAGT-TTTGATT
1 CTATATTTTTATT-TTTATTTTA-TATTT-AAT
*
67454676 CTATATTTTTATTTTTATTTTAATAATTAAT
1 CTATATTTTTATTTTTATTTT-ATATTTAAT
67454707 AACTTGAGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
29 1 0.02
30 17 0.33
31 21 0.41
32 12 0.24
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (30 bp):
CTATATTTTTATTTTTATTTTATATTTAAT
Found at i:67459104 original size:14 final size:14
Alignment explanation
Indices: 67459085--67459113 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
67459075 TAGTAAGTTC
67459085 ACATGCAAATAGCA
1 ACATGCAAATAGCA
67459099 ACATGCAAATAGCA
1 ACATGCAAATAGCA
67459113 A
1 A
67459114 GTAACATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.14
Consensus pattern (14 bp):
ACATGCAAATAGCA
Found at i:67459536 original size:93 final size:93
Alignment explanation
Indices: 67459424--67459595 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
67459414 ACCCATAAGT
* *
67459424 GAACTCGGACTCAACTCAACAAGC-TCGGGCATTCGCATCCATAAGTGAACTCGGAGTCAACTCA
1 GAACTCGGACTCAACTCAACAA-CTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67459488 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
67459517 GAACTCGGACTCAACTCAACGACTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAACTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67459582 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
67459596 CAAACATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAACTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:67459591 original size:46 final size:46
Alignment explanation
Indices: 67459416--67459591 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
67459406 TGTGACCCAC
* *
67459416 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
67459462 CCATAAGTGAACTCGGAGTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* ***
67459508 ACATCTCTCGAACTCGGACTCAACTCAACGA-CTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGC-TCGGACATTCGCAT
*
67459555 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
67459592 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 67 0.63
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:67462022 original size:30 final size:30
Alignment explanation
Indices: 67461978--67462066 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
67461968 CAAAGATAAC
67461978 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
67462007 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
67462037 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
67462067 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:67462026 original size:15 final size:15
Alignment explanation
Indices: 67461978--67462057 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
67461968 CAAAGATAAC
*
67461978 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67461992 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
67462007 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
67462022 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
67462037 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
67462052 AAGAAA
1 AAGAAA
67462058 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67462066 original size:15 final size:15
Alignment explanation
Indices: 67461989--67462066 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
67461979 AGAAAACCGA
67461989 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
67462004 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
67462018 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
67462033 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
67462049 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67462064 ATA
1 ATA
67462067 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67465070 original size:46 final size:45
Alignment explanation
Indices: 67465003--67465172 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 45
67464993 TGTAACCCGC
67465003 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* * *
67465049 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* *** * * *
67465095 ACATCTCTCGAACTCAAACGCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
67465142 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCAGACTCAACTCAACGAG
67465173 TTCGAATGCC
Statistics
Matches: 99, Mismatches: 20, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
45 2 0.02
46 62 0.63
47 33 0.33
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:67465128 original size:93 final size:93
Alignment explanation
Indices: 67465011--67465184 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
67465001 GCCCATAAGT
* * * *
67465011 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAAACGCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67465076 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGAATGCCTAGTTACATCTCTC
67465104 GAACTCAAACGCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAAACGCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67465169 CGAGTTCGAATGCCTA
66 CGAGCTCGAATGCCTA
67465185 AACATCCTAG
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAAACGCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGAATGCCTAGTTACATCTCTC
Found at i:67467104 original size:20 final size:20
Alignment explanation
Indices: 67467076--67467127 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 20
67467066 AATCAAGTGC
* **
67467076 AAATGATTTTAACCATTTCA
1 AAATCATTTTAACCAAGTCA
* * *
67467096 AAATTATTTCAATCAAGTCA
1 AAATCATTTTAACCAAGTCA
67467116 AAATCATTTTAA
1 AAATCATTTTAA
67467128 AATGATTTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.38
Consensus pattern (20 bp):
AAATCATTTTAACCAAGTCA
Found at i:67471867 original size:24 final size:24
Alignment explanation
Indices: 67471816--67472056 Score: 351
Period size: 24 Copynumber: 10.0 Consensus size: 24
67471806 GCTTTATAAT
* *
67471816 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
67471841 ATAACTGGGGCGA-AAGCCCTTTTA
1 ATAACTGGGGC-ATAAGCCCTTTTG
67471865 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
67471889 ATAACTGGGGCGTAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
67471913 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
67471937 ATAGCTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
67471961 ATAACTGGGGCATAAGCTCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
67471985 ATAGCTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
67472009 ATAACTGGGGCATAAGCTCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
67472033 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
67472057 CACTTCCTCC
Statistics
Matches: 197, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
23 1 0.01
24 184 0.93
25 12 0.06
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:67472130 original size:20 final size:21
Alignment explanation
Indices: 67472105--67472161 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
67472095 TTATGATTAC
*
67472105 ATCATGTGCATTTCATA-CAT
1 ATCATGTGCATATCATATCAT
67472125 ATCATGTGCATATCATATCAT
1 ATCATGTGCATATCATATCAT
67472146 -TCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
67472162 CCACTTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 22 0.63
21 3 0.09
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAT
Found at i:67472271 original size:24 final size:24
Alignment explanation
Indices: 67472244--67472421 Score: 295
Period size: 24 Copynumber: 7.5 Consensus size: 24
67472234 TCATAGGCGA
* *
67472244 AAGCCCTTTTAATAACTAGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
67472268 AAGCCCTTTTGATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
*
67472292 AAGCCCTTTTAATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
*
67472316 AAGCCCTTTTGATAGCTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
*
67472340 AAGCCC-TTTGATAGCTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
67472363 AAGCCCTTTTGATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
*
67472387 AAGCCCTTTTAATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
67472411 AAGCCCTTTTG
1 AAGCCCTTTTG
67472422 CACTTCCTCC
Statistics
Matches: 145, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
23 23 0.16
24 122 0.84
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (24 bp):
AAGCCCTTTTGATAACTGGGGCAT
Found at i:67472371 original size:71 final size:71
Alignment explanation
Indices: 67472244--67472419 Score: 298
Period size: 71 Copynumber: 2.5 Consensus size: 71
67472234 TCATAGGCGA
*
67472244 AAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACT
1 AAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTGATAACTGGGGCATAAGCCCTTTTAATAACT
67472309 GGGGCAT
65 GGGGCAT
* * * *
67472316 AAGCCCTTTTGATAGCTGGGGCATAAGCCCTTTGATAGCTGGGGCATAAGCCCTTTTGATAACTG
1 AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTGATAACTGGGGCATAAGCCCTTTTAATAACTG
67472381 GGGCAT
66 GGGCAT
67472387 AAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
1 AAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
67472420 TGCACTTCCT
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
71 70 0.72
72 27 0.28
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTGATAACTGGGGCATAAGCCCTTTTAATAACTG
GGGCAT
Found at i:67472372 original size:95 final size:96
Alignment explanation
Indices: 67472244--67472421 Score: 322
Period size: 95 Copynumber: 1.9 Consensus size: 96
67472234 TCATAGGCGA
67472244 AAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACT
1 AAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACT
67472309 GGGGCATAAGCCCTTTTGATAGCTGGGGCAT
66 GGGGCATAAGCCCTTTTGATAGCTGGGGCAT
* * *
67472340 AAGCCC-TTTGATAGCTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACT
1 AAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACT
67472404 GGGGCATAAGCCCTTTTG
66 GGGGCATAAGCCCTTTTG
67472422 CACTTCCTCC
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
95 73 0.92
96 6 0.08
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (96 bp):
AAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACT
GGGGCATAAGCCCTTTTGATAGCTGGGGCAT
Found at i:67472479 original size:365 final size:366
Alignment explanation
Indices: 67471878--67472603 Score: 1337
Period size: 365 Copynumber: 2.0 Consensus size: 366
67471868 ACTGGGGCAT
* * * * *
67471878 AAGCCCTTTTGATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAGCT
1 AAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACT
*
67471943 GGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCTCTTTTGATAGCTGGGGCATAAGCCCTTTT
66 GGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCTCCTTTGATAGCTGGGGCATAAGCCCTTTT
* *
67472008 GATAACTGGGGCATAAGCTCTTTTAATAACTGGGGCATAAGCCCTTTTGCACTTCCTCCATCCAT
131 GATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGCACTTCCTCCATCCAC
67472073 ATAAAAACCCAACCCAATGCATTTATGATTACATCATGTGCATTTCATACATATCATGTGCATAT
196 ATAAAAACCCAACCCAATGCATTTATGATTACATCATGTGCATTTCATACATATCATGTGCATAT
* *
67472138 CATATCATTCATGTATATCATATCCCACTTATCAAATTTATAATTAAACCTTAGGTGTATAATGG
261 CATATCATTCATGTACATCATATCCCACTTATCAAATTTATAATTAAACCCTAGGTGTATAATGG
67472203 TCATTTTTACCTAGGGGCAAAGCAGTCATTTTCATAGGCGA
326 TCATTTTTACCTAGGGGCAAAGCAGTCATTTTCATAGGCGA
*
67472244 AAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACT
1 AAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACT
*
67472309 GGGGCATAAGCCCTTTTGATAGCTGGGGCATAAGC-CCTTTGATAGCTGGGGCATAAGCCCTTTT
66 GGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCTCCTTTGATAGCTGGGGCATAAGCCCTTTT
67472373 GATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGCACTTCCTCCATCCAC
131 GATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGCACTTCCTCCATCCAC
67472438 ATAAAAACCCAACCCAATGCATTTATGATTACATCATGTGCATTTCATACATATCATGTGCATAT
196 ATAAAAACCCAACCCAATGCATTTATGATTACATCATGTGCATTTCATACATATCATGTGCATAT
67472503 CATATCATTCATGTACATCATATCCCACTTATCAAATTTATAATTAAACCCTAGGTGTATAATGG
261 CATATCATTCATGTACATCATATCCCACTTATCAAATTTATAATTAAACCCTAGGTGTATAATGG
67472568 TCATTTTTACCTAGGGGCAAAGCAGTCATTTTCATA
326 TCATTTTTACCTAGGGGCAAAGCAGTCATTTTCATA
67472604 TTATAAAGGT
Statistics
Matches: 348, Mismatches: 12, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
365 255 0.73
366 93 0.27
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (366 bp):
AAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACT
GGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCTCCTTTGATAGCTGGGGCATAAGCCCTTTT
GATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGCACTTCCTCCATCCAC
ATAAAAACCCAACCCAATGCATTTATGATTACATCATGTGCATTTCATACATATCATGTGCATAT
CATATCATTCATGTACATCATATCCCACTTATCAAATTTATAATTAAACCCTAGGTGTATAATGG
TCATTTTTACCTAGGGGCAAAGCAGTCATTTTCATAGGCGA
Found at i:67472495 original size:20 final size:21
Alignment explanation
Indices: 67472470--67472516 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
67472460 TTATGATTAC
*
67472470 ATCATGTGCATTTCATA-CAT
1 ATCATGTGCATATCATATCAT
67472490 ATCATGTGCATATCATATCAT
1 ATCATGTGCATATCATATCAT
67472511 -TCATGT
1 ATCATGT
67472517 ACATCATATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAT
Found at i:67480481 original size:24 final size:24
Alignment explanation
Indices: 67480298--67480472 Score: 244
Period size: 24 Copynumber: 7.2 Consensus size: 24
67480288 GCTTTATCAT
* *
67480298 ATAACTGGAGGCCT-AGCCTCTGTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
67480323 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
67480347 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
67480371 ATAACTGGGGCGTAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
67480395 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
67480419 ATAGCTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
67480443 ATAACTGAGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
67480467 ATAACT
1 ATAACT
67480473 AAGGTATAAC
Statistics
Matches: 136, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
24 124 0.91
25 12 0.09
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67480563 original size:20 final size:20
Alignment explanation
Indices: 67480538--67480632 Score: 142
Period size: 20 Copynumber: 4.8 Consensus size: 20
67480528 TTATGATTAC
*
67480538 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
67480558 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67480578 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67480598 ATCATGTACATATCATATCAT
1 ATCATGTGCATATCATA-CAT
67480619 -TCATGT--ATATCATA
1 ATCATGTGCATATCATA
67480633 TCCCACTTAT
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
18 8 0.11
20 61 0.85
21 3 0.04
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67480569 original size:11 final size:11
Alignment explanation
Indices: 67480553--67480625 Score: 77
Period size: 11 Copynumber: 7.2 Consensus size: 11
67480543 GTGCATTTCA
67480553 TACATATCATG
1 TACATATCATG
*
67480564 TGCATATCA--
1 TACATATCATG
67480573 TACATATCATG
1 TACATATCATG
*
67480584 TGCATATCA--
1 TACATATCATG
67480593 TACATATCATG
1 TACATATCATG
*
67480604 TACATATCATA
1 TACATATCATG
67480615 T-CAT-TCATG
1 TACATATCATG
67480624 TA
1 TA
67480626 TATCATATCC
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
9 21 0.41
10 3 0.06
11 27 0.53
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.37
Consensus pattern (11 bp):
TACATATCATG
Found at i:67489798 original size:28 final size:28
Alignment explanation
Indices: 67489766--67489830 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
67489756 ATTTACTAGG
*
67489766 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
67489794 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
67489822 ATACCCCTA
1 ATACCCCTA
67489831 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:67489978 original size:28 final size:28
Alignment explanation
Indices: 67489938--67490023 Score: 120
Period size: 28 Copynumber: 3.0 Consensus size: 28
67489928 GAAGCGTCCA
67489938 GGTGGCTA-TGCCACAAATTATCTGTTCT
1 GGTGGC-ACTGCCACAAATTATCTGTTCT
* *
67489966 GGTGGCCCTGCCACAAATTATCTGCTCT
1 GGTGGCACTGCCACAAATTATCTGTTCT
*
67489994 GGTGGCACTGCCACAAAATATCTGTATCT
1 GGTGGCACTGCCACAAATTATCTGT-TCT
67490023 G
1 G
67490024 TTGACTCTGT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
28 47 0.92
29 4 0.08
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (28 bp):
GGTGGCACTGCCACAAATTATCTGTTCT
Found at i:67490519 original size:18 final size:18
Alignment explanation
Indices: 67490480--67490520 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
67490470 TAATAAGGCC
* *
67490480 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
67490498 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
67490516 TTTTA
1 TTTTA
67490521 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:67491393 original size:5 final size:5
Alignment explanation
Indices: 67491383--67491409 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
67491373 CAATTTTTGA
67491383 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
67491410 CACACAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:67491909 original size:43 final size:43
Alignment explanation
Indices: 67491799--67491925 Score: 159
Period size: 43 Copynumber: 3.0 Consensus size: 43
67491789 GATCTTACTT
* * * * *
67491799 GTAATCACATATCGATGCCACTATCCCGGACAGGGTGTTACAC
1 GTAATCACATATCGATGCCAATGTCCCAGACATGGTCTTACAC
* * *
67491842 G-AATCAAATAT-GATGTCGATGTCCCAGACATGGTCTTACAC
1 GTAATCACATATCGATGCCAATGTCCCAGACATGGTCTTACAC
*
67491883 GTAATCACACATCGATGCCAATGTCCCAGACATGGTCTTACAC
1 GTAATCACATATCGATGCCAATGTCCCAGACATGGTCTTACAC
67491926 AGGAACACAT
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 24 0.34
42 17 0.24
43 29 0.41
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
GTAATCACATATCGATGCCAATGTCCCAGACATGGTCTTACAC
Found at i:67497388 original size:28 final size:28
Alignment explanation
Indices: 67497352--67497431 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
67497342 CATACATGCT
* *
67497352 TATGGCCCACTAGGCCCATTCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCACATCT-A
* *
67497380 TATGACCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
67497409 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
67497432 TTTTACAGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 21 0.48
29 22 0.50
30 1 0.02
ACGTcount: A:0.28, C:0.35, G:0.14, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:67497417 original size:29 final size:28
Alignment explanation
Indices: 67497352--67497431 Score: 99
Period size: 28 Copynumber: 2.8 Consensus size: 28
67497342 CATACATGCT
* *
67497352 TATGGCCCACTAGGCCCATTCTCATTCA
1 TATGGCCCACTAGGCCCAATCACATTCA
* *
67497380 TATGACCCATTAGGCCCAAATCACA-TCTA
1 TATGGCCCACTAGGCCC-AATCACATTC-A
67497409 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
67497432 TTTTACAGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 23 0.52
29 21 0.48
ACGTcount: A:0.28, C:0.35, G:0.14, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATTCA
Found at i:67497675 original size:16 final size:17
Alignment explanation
Indices: 67497656--67497692 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
67497646 AAATTTTGGC
67497656 TTTTCGACATTTCAG-T
1 TTTTCGACATTTCAGCT
67497672 TTTTCGACATTTCAGCT
1 TTTTCGACATTTCAGCT
67497689 TTTT
1 TTTT
67497693 GGGATTTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.16, C:0.19, G:0.11, T:0.54
Consensus pattern (17 bp):
TTTTCGACATTTCAGCT
Found at i:67506020 original size:45 final size:45
Alignment explanation
Indices: 67505971--67506087 Score: 171
Period size: 45 Copynumber: 2.6 Consensus size: 45
67505961 GTATTTCTGA
* * * *
67505971 GTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTTCGT
1 GTAAGACCACGTCTGGGACATTGGCATCGATATATATGGTTACGT
*
67506016 GTAAGACCACGTCTAGGACATTGGCATCGATATATATGGTTACGT
1 GTAAGACCACGTCTGGGACATTGGCATCGATATATATGGTTACGT
* *
67506061 GTAAGACCATGTCTGGGACATCGGCAT
1 GTAAGACCACGTCTGGGACATTGGCAT
67506088 TGTATTAGAT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (45 bp):
GTAAGACCACGTCTGGGACATTGGCATCGATATATATGGTTACGT
Found at i:67506128 original size:41 final size:43
Alignment explanation
Indices: 67505992--67506134 Score: 132
Period size: 45 Copynumber: 3.3 Consensus size: 43
67505982 TCTGGGACGT
* *
67505992 TGGCATCGATATATGTGTTTTCGTGTAAGACCAC-GTCTAGGACA
1 TGGCATCGATATATATG-ATTCGTGTAAGACC-CTGTCTAGGACA
* * *
67506036 TTGGCATCGATATATATGGTTACGTGTAAGACCATGTCTGGGACA
1 -TGGCATCGATATATATGATT-CGTGTAAGACCCTGTCTAGGACA
* *
67506081 TCGGCATTG-TAT-TA-GATTCGAGTAAGACCCTGTCTAGGACA
1 T-GGCATCGATATATATGATTCGTGTAAGACCCTGTCTAGGACA
*
67506122 GTGGCATCAATAT
1 -TGGCATCGATAT
67506135 GAGATAGCAT
Statistics
Matches: 82, Mismatches: 11, Indels: 13
0.77 0.10 0.12
Matches are distributed among these distances:
41 25 0.30
42 7 0.09
43 2 0.02
44 6 0.07
45 42 0.51
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TGGCATCGATATATATGATTCGTGTAAGACCCTGTCTAGGACA
Found at i:67507956 original size:40 final size:37
Alignment explanation
Indices: 67507899--67508182 Score: 237
Period size: 40 Copynumber: 7.1 Consensus size: 37
67507889 TTGAATGATG
* * *
67507899 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGT-ACTA-A
67507939 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAG-TACTAA
* * *
67507978 TTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAAA
1 -TCCGGACTAAGTCCGAAGGCATTTGTGCGAG-TACT-AA
67508018 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAG-TACT-AA
**
67508058 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAG-TACT-AA
**
67508098 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAG-TACTA-A
* * * **
67508138 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTA-CTA-A
67508178 TCCGG
1 TCCGG
67508183 TTAAATTCCG
Statistics
Matches: 217, Mismatches: 18, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
39 37 0.17
40 171 0.79
41 9 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (37 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTACTAA
Found at i:67508004 original size:80 final size:80
Alignment explanation
Indices: 67507899--67508163 Score: 367
Period size: 80 Copynumber: 3.3 Consensus size: 80
67507889 TTGAATGATG
* * * *
67507899 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
*
67507963 TGTGCGAGATACTAAT
65 TGTGCGAGTTACTAAT
*
67507979 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
*
67508043 GTGCGAGTTACTAAA
66 GTGCGAGTTACTAAT
* **
67508058 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATT
67508122 TGTGCGAGTTACT-AT
65 TGTGCGAGTTACTAAT
* *
67508137 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
67508164 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
79 66 0.40
80 100 0.60
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAT
Found at i:67508170 original size:80 final size:78
Alignment explanation
Indices: 67507900--67508196 Score: 332
Period size: 80 Copynumber: 3.7 Consensus size: 78
67507890 TGAATGATGT
* * * * * **
67507900 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATTT
* *
67507964 GTGCGAGATACTAATT
64 GTGCGAGTTACTAA-A
**
67507980 CCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATTTG
67508044 TGCGAGTTACTAAA
65 TGCGAGTTACTAAA
* *
67508058 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGT-CCGAAGGCATTT
67508123 GTGCGAGTTACTATAA
64 GTGCGAGTTACTA-AA
* * * *
67508139 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTA-CTAAATCCGGGTT-AAGTCCGAAGG
67508197 TACGTGATTT
Statistics
Matches: 193, Mismatches: 17, Indels: 15
0.86 0.08 0.07
Matches are distributed among these distances:
79 77 0.40
80 114 0.59
81 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGT
GCGAGTTACTAAA
Found at i:67508170 original size:120 final size:118
Alignment explanation
Indices: 67507952--67508196 Score: 325
Period size: 120 Copynumber: 2.1 Consensus size: 118
67507942 GGACTAAGAT
*
67507952 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
** *
67508017 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTC
66 ATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATC
* * *
67508071 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTA
* * * *
67508136 TAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
65 -AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
67508190 CCGAAGG
1 CCGAAGG
67508197 TACGTGATTT
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
119 52 0.47
120 57 0.51
121 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
ATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:67510873 original size:38 final size:38
Alignment explanation
Indices: 67510830--67510940 Score: 159
Period size: 38 Copynumber: 2.9 Consensus size: 38
67510820 TTGCAAATTA
* *
67510830 ACATGTATAACCGTGGCATATCCACTTAGCACTACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* * *
67510868 ACATGTTTAACGGTGGTATATCAACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
67510906 ACACGTATAACTGTGGTATATCCACTTAGCACCAC
1 ACATGTATAACCGTGGTATATCCACTTAGCACCAC
67510941 ATTTTACCAT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:67513566 original size:30 final size:30
Alignment explanation
Indices: 67513531--67513588 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
67513521 AAAAACTAAG
*
67513531 TAAAGAAATTCAAG-ATAGAGAAACCCAAAA
1 TAAAGAAA-TCAAGAATAAAGAAACCCAAAA
*
67513561 TAAAGAAATCCAGAATAAAGAAACCCAA
1 TAAAGAAATCAAGAATAAAGAAACCCAA
67513589 GATACGGTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.60, C:0.16, G:0.12, T:0.12
Consensus pattern (30 bp):
TAAAGAAATCAAGAATAAAGAAACCCAAAA
Found at i:67513567 original size:15 final size:15
Alignment explanation
Indices: 67513549--67513588 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
67513539 TTCAAGATAG
67513549 AGAAACCCAAAATAA
1 AGAAACCCAAAATAA
* *
67513564 AGAAATCCAGAATAA
1 AGAAACCCAAAATAA
67513579 AGAAACCCAA
1 AGAAACCCAA
67513589 GATACGGTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.62, C:0.20, G:0.10, T:0.07
Consensus pattern (15 bp):
AGAAACCCAAAATAA
Found at i:67516529 original size:38 final size:38
Alignment explanation
Indices: 67516486--67516694 Score: 105
Period size: 38 Copynumber: 5.0 Consensus size: 38
67516476 TTTCAAATTA
*
67516486 ACATGTATAACCATGGCATTTCCACTTAGCACCACGTT
1 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
* * * * *
67516524 ACATGTTTAACCGTTGTATATCCACTTAGCACCATGTT
1 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
* * *
67516562 AATGAATTGATATATGTAACCGTGGCATATCCACTTAGCACTACGTT
1 -A--CA-TG---TA--TAACCATGGCATATCCACTTAGCACCACGTT
* *
67516609 ACATGTATCAA-GATGTGTAATCGTGTTATCTCCACTTAGCACCACGTT
1 ACATGTAT-AACCATG-G----C-----ATATCCACTTAGCACCACGTT
* * *
67516657 ACACGTATAACCATGGTATATCCACTTACCACCACGTT
1 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
67516695 TTTCCATTCC
Statistics
Matches: 128, Mismatches: 22, Indels: 42
0.67 0.11 0.22
Matches are distributed among these distances:
38 54 0.42
39 4 0.03
40 2 0.02
41 1 0.01
42 2 0.02
43 3 0.02
44 1 0.01
45 1 0.01
46 1 0.01
47 30 0.23
48 29 0.23
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (38 bp):
ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
Found at i:67525075 original size:13 final size:13
Alignment explanation
Indices: 67525059--67525115 Score: 78
Period size: 13 Copynumber: 4.4 Consensus size: 13
67525049 GACACGGCTA
* *
67525059 TGTGGCACGCCTG
1 TGTGACACGCCCG
*
67525072 TGTGACACGCCCA
1 TGTGACACGCCCG
67525085 TGTGACACGCCCG
1 TGTGACACGCCCG
*
67525098 TGTGACACGCCTG
1 TGTGACACGCCCG
67525111 TGTGA
1 TGTGA
67525116 GGAAGCCCTG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (13 bp):
TGTGACACGCCCG
Found at i:67525114 original size:26 final size:26
Alignment explanation
Indices: 67525049--67525115 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 26
67525039 CTGCCAAATG
* * *
67525049 GACACGGCTATGTGGCACGCCTGTGT
1 GACACGCCTATGTGACACGCCCGTGT
*
67525075 GACACGCCCATGTGACACGCCCGTGT
1 GACACGCCTATGTGACACGCCCGTGT
*
67525101 GACACGCCTGTGTGA
1 GACACGCCTATGTGA
67525116 GGAAGCCCTG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.19
Consensus pattern (26 bp):
GACACGCCTATGTGACACGCCCGTGT
Found at i:67528180 original size:29 final size:29
Alignment explanation
Indices: 67528113--67528305 Score: 218
Period size: 29 Copynumber: 6.8 Consensus size: 29
67528103 TACATACATG
* *
67528113 CATATGGCCCACTAGACCCAATCTCA--TT
1 CATATGGCCCATTAGGCCCAAT-TCACGTT
* *
67528141 TATATGGCCCATTCGGCCCAATTCACGTT
1 CATATGGCCCATTAGGCCCAATTCACGTT
* *
67528170 CATATGACCCATTAGGCCCAATTCACATT
1 CATATGGCCCATTAGGCCCAATTCACGTT
*
67528199 CATATGGCCCATTAGGCCCAATCTTA--TT
1 CATATGGCCCATTAGGCCCAAT-TCACGTT
* *
67528227 TATATGGCCCATCCA-GCCCAATTCACGTT
1 CATATGGCCCAT-TAGGCCCAATTCACGTT
*
67528256 CATATGGCCCATCAGGCCCAATTCACGTT
1 CATATGGCCCATTAGGCCCAATTCACGTT
*
67528285 CATATGTCCCA-TAGGCCCAAT
1 CATATGGCCCATTAGGCCCAAT
67528306 CTCATTTATG
Statistics
Matches: 142, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
27 5 0.04
28 49 0.35
29 86 0.61
30 2 0.01
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCACGTT
Found at i:67528190 original size:57 final size:57
Alignment explanation
Indices: 67528113--67528337 Score: 228
Period size: 57 Copynumber: 3.9 Consensus size: 57
67528103 TACATACATG
* * *
67528113 CATATGGCCCACTAGACCCAATCTCATTTATATGGCCCATTCGGCCCAATTCACGTT
1 CATATGGCCCATTAGGCCCAATCTCATTCATATGGCCCATTCGGCCCAATTCACGTT
* * * *
67528170 CATATGACCCATTAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCTTA--TT
1 CATATGGCCCATTAGGCCCAA-TCTCATTCATATGGCCCATTCGGCCCAAT-TCACGTT
* *
67528227 TATATGGCCCATCCA-GCCCAAT-TCACGTTCATATGGCCCA-TCAGGCCCAATTCACGTT
1 CATATGGCCCAT-TAGGCCCAATCTCA--TTCATATGGCCCATTC-GGCCCAATTCACGTT
* * * * *
67528285 CATATGTCCCA-TAGGCCCAATCTCATTTATGTGGCCCATCCGGCCCAAATCAC
1 CATATGGCCCATTAGGCCCAATCTCATTCATATGGCCCATTCGGCCCAATTCAC
67528338 ATTATATTCA
Statistics
Matches: 137, Mismatches: 20, Indels: 23
0.76 0.11 0.13
Matches are distributed among these distances:
55 2 0.01
56 27 0.20
57 65 0.47
58 41 0.30
59 2 0.01
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.27
Consensus pattern (57 bp):
CATATGGCCCATTAGGCCCAATCTCATTCATATGGCCCATTCGGCCCAATTCACGTT
Found at i:67528258 original size:86 final size:85
Alignment explanation
Indices: 67528108--67528337 Score: 343
Period size: 86 Copynumber: 2.7 Consensus size: 85
67528098 ACCGCTACAT
* * *
67528108 ACATGCATATGGCCCACTAGACCCAATCTCATTTATATGGCCCATTCGGCCCAATTCACGTTCAT
1 ACATTCATATGGCCCA-TAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTCAT
*
67528173 ATGACCCATTAGGCCCAATTC
65 ATGACCCATCAGGCCCAATTC
* *
67528194 ACATTCATATGGCCCATTAGGCCCAATCTTATTTATATGGCCCATCCAGCCCAATTCACGTTCAT
1 ACATTCATATGGCCCA-TAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTCAT
*
67528259 ATGGCCCATCAGGCCCAATTC
65 ATGACCCATCAGGCCCAATTC
* * * *
67528280 ACGTTCATATGTCCCATAGGCCCAATCTCATTTATGTGGCCCATCCGGCCCAAATCAC
1 ACATTCATATGGCCCATAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCAC
67528338 ATTATATTCA
Statistics
Matches: 130, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
85 38 0.29
86 92 0.71
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27
Consensus pattern (85 bp):
ACATTCATATGGCCCATAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTCATA
TGACCCATCAGGCCCAATTC
Found at i:67528340 original size:29 final size:29
Alignment explanation
Indices: 67528108--67528344 Score: 193
Period size: 29 Copynumber: 8.3 Consensus size: 29
67528098 ACCGCTACAT
* *
67528108 ACATGCATATGGCCCA-CTAGACCC-AATC
1 ACATTCATATGGCCCATC-AGGCCCAAATC
* * *
67528136 TCATTTATATGGCCCATTC-GGCCCAATTC
1 ACATTCATATGGCCCA-TCAGGCCCAAATC
* * * *
67528165 ACGTTCATATGACCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAAATC
*
67528194 ACATTCATATGGCCCATTAGGCCC-AATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
** * *
67528222 TTATTTATATGGCCCATCCA-GCCCAATTC
1 ACATTCATATGGCCCAT-CAGGCCCAAATC
* *
67528251 ACGTTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* *
67528280 ACGTTCATATGTCCCAT-AGGCCC-AATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* * * *
67528307 TCATTTATGTGGCCCATCCGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
67528336 ACATT-ATAT
1 ACATTCATAT
67528345 TCATGCTTAC
Statistics
Matches: 168, Mismatches: 32, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
27 15 0.09
28 55 0.33
29 97 0.58
30 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAAATC
Found at i:67532789 original size:29 final size:29
Alignment explanation
Indices: 67532710--67532898 Score: 195
Period size: 29 Copynumber: 6.6 Consensus size: 29
67532700 ACCGCTACAT
* *
67532710 ACATGCATATGGCCCA-CTAGACCCAA-TC
1 ACATTCATATGGCCCATC-AGGCCCAATTC
* * *
67532738 TCATTTATATGGCCCATCCGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* *
67532767 ACGTTCATATGGCCTATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
67532796 ACATTCATATGGCCCATTAGGCCCAA-TC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* * * * * *
67532824 ACATTTATTTGACCCATCCGACACAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
67532853 ACGTTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* *
67532882 ATATTCATATGACCCAT
1 ACATTCATATGGCCCAT
67532899 TAGCTTAATC
Statistics
Matches: 128, Mismatches: 30, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
28 40 0.31
29 88 0.69
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAATTC
Found at i:67532792 original size:57 final size:57
Alignment explanation
Indices: 67532731--67532934 Score: 189
Period size: 57 Copynumber: 3.6 Consensus size: 57
67532721 GCCCACTAGA
* * * * *
67532731 CCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTCATATGGCCTATCAGG
1 CCCAATCTCATTCATATGGCCCATCAGGCCCAATTCACATTCATATGACCCATCAGG
* * * * * *
67532788 CCCAATTCACATTCATATGGCCCATTAGGCCCAA-TCACATTTATTTGACCCATCCGA
1 CCCAA-TCTCATTCATATGGCCCATCAGGCCCAATTCACATTCATATGACCCATCAGG
* * *
67532845 CACAAT-TCACGTTCATATGGCCCATCAGGCCCAATTCATATTCATATGACCCATTA-G
1 CCCAATCTCA--TTCATATGGCCCATCAGGCCCAATTCACATTCATATGACCCATCAGG
** * * *
67532902 CTTAATCTCATTTATATGGCCTATCCGGCCCAA
1 CCCAATCTCATTCATATGGCCCATCAGGCCCAA
67532935 ATCTCATTAT
Statistics
Matches: 117, Mismatches: 25, Indels: 11
0.76 0.16 0.07
Matches are distributed among these distances:
55 2 0.02
56 21 0.18
57 51 0.44
58 43 0.37
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (57 bp):
CCCAATCTCATTCATATGGCCCATCAGGCCCAATTCACATTCATATGACCCATCAGG
Found at i:67532860 original size:86 final size:86
Alignment explanation
Indices: 67532710--67532928 Score: 287
Period size: 86 Copynumber: 2.6 Consensus size: 86
67532700 ACCGCTACAT
* * * * * *
67532710 ACATGCATATGGCCCACTAGACCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTCAT
1 ACATTCATATGGCCCATTAGACCCAATCACATTTATATGACCCATCCGACACAATTCACGTTCAT
*
67532775 ATGGCCTATCAGGCCCAATTC
66 ATGGCCCATCAGGCCCAATTC
* *
67532796 ACATTCATATGGCCCATTAGGCCCAATCACATTTATTTGACCCATCCGACACAATTCACGTTCAT
1 ACATTCATATGGCCCATTAGACCCAATCACATTTATATGACCCATCCGACACAATTCACGTTCAT
67532861 ATGGCCCATCAGGCCCAATTC
66 ATGGCCCATCAGGCCCAATTC
* * ** * * *
67532882 ATATTCATATGACCCATTAG-CTTAATCTCATTTATATGGCCTATCCG
1 ACATTCATATGGCCCATTAGACCCAATCACATTTATATGACCCATCCG
67532929 GCCCAAATCT
Statistics
Matches: 116, Mismatches: 17, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
85 21 0.18
86 95 0.82
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (86 bp):
ACATTCATATGGCCCATTAGACCCAATCACATTTATATGACCCATCCGACACAATTCACGTTCAT
ATGGCCCATCAGGCCCAATTC
Found at i:67532937 original size:29 final size:29
Alignment explanation
Indices: 67532716--67532946 Score: 150
Period size: 29 Copynumber: 8.1 Consensus size: 29
67532706 ACATACATGC
* *
67532716 ATATGGCCCA-CTAGACCC-AATCTCATTT
1 ATATGGCCCATC-AGGCCCAAATCACATTT
* * * *
67532744 ATATGGCCCATCCGGCCCAATTCACGTTC
1 ATATGGCCCATCAGGCCCAAATCACATTT
* * *
67532773 ATATGGCCTATCAGGCCCAATTCACATTC
1 ATATGGCCCATCAGGCCCAAATCACATTT
*
67532802 ATATGGCCCATTAGGCCC-AATCACATTT
1 ATATGGCCCATCAGGCCCAAATCACATTT
* * * * * * * *
67532830 ATTTGACCCATCCGACACAATTCACGTTC
1 ATATGGCCCATCAGGCCCAAATCACATTT
* * *
67532859 ATATGGCCCATCAGGCCCAATTCATATTC
1 ATATGGCCCATCAGGCCCAAATCACATTT
* * ** *
67532888 ATATGACCCATTA-G-CTTAATCTCATTT
1 ATATGGCCCATCAGGCCCAAATCACATTT
* * *
67532915 ATATGGCCTATCCGGCCCAAATCTCA-TT
1 ATATGGCCCATCAGGCCCAAATCACATTT
67532943 ATAT
1 ATAT
67532947 TCATGCTCAC
Statistics
Matches: 155, Mismatches: 43, Indels: 10
0.75 0.21 0.05
Matches are distributed among these distances:
27 16 0.10
28 42 0.27
29 97 0.63
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (29 bp):
ATATGGCCCATCAGGCCCAAATCACATTT
Found at i:67542455 original size:47 final size:47
Alignment explanation
Indices: 67542392--67542496 Score: 165
Period size: 47 Copynumber: 2.2 Consensus size: 47
67542382 CCCTTCGGGA
* *
67542392 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
* *
67542439 TTTATCACATATATACACTTTCACATCCATTACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
67542486 CTTACCACATA
1 CTTATCACATA
67542497 ATTAATACTA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:67546055 original size:21 final size:20
Alignment explanation
Indices: 67546027--67546068 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
67546017 CAAAATTTGT
*
67546027 ATAACTATCATTAAACATTC
1 ATAACTATCATCAAACATTC
*
67546047 ATAATCTATCATCAATCATTC
1 ATAA-CTATCATCAAACATTC
67546068 A
1 A
67546069 AATACATGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:67556463 original size:20 final size:20
Alignment explanation
Indices: 67556438--67556479 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
67556428 TATTTTTCTG
67556438 TTGCTTACATCCACGTACCA
1 TTGCTTACATCCACGTACCA
67556458 TTGCTTACATCCACGTACCA
1 TTGCTTACATCCACGTACCA
67556478 TT
1 TT
67556480 ATCTTTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.33, G:0.10, T:0.33
Consensus pattern (20 bp):
TTGCTTACATCCACGTACCA
Found at i:67561560 original size:9 final size:9
Alignment explanation
Indices: 67561546--67561576 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
67561536 ATATTCTTGC
67561546 TTCATGCAT
1 TTCATGCAT
67561555 TTCATGCAT
1 TTCATGCAT
*
67561564 TTCATGTAT
1 TTCATGCAT
67561573 TTCA
1 TTCA
67561577 CACACACTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.10, T:0.48
Consensus pattern (9 bp):
TTCATGCAT
Done.