Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 212 of 295
Found at i:67565264 original size:56 final size:55
Alignment explanation
Indices: 67565202--67565384 Score: 217
Period size: 56 Copynumber: 3.3 Consensus size: 55
67565192 GAGATTGGCG
* *
67565202 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAGATTGATTATGTAGCA
* *
67565258 CTAAGTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGAGATTGATTATGTAGCA
* * * * * *
67565314 CTAAGTGTGCGAGCTTGATTATGTTGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAGATTGATTATGTAGCA
67565370 CTAAGTGTGCGAGTT
1 CTAAGTGTGCGAGTT
67565385 GATTATATAG
Statistics
Matches: 110, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
54 2 0.02
55 17 0.15
56 88 0.80
57 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (55 bp):
CTAAGTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAGATTGATTATGTAGCA
Found at i:67565284 original size:28 final size:28
Alignment explanation
Indices: 67565227--67565407 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
67565217 TAAATTGTGC
* *
67565227 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
67565254 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
67565282 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
67565310 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* * *
67565338 TGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
67565366 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
67565393 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67565408 GACTTATTAT
Statistics
Matches: 145, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 40 0.28
28 105 0.72
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:67573473 original size:28 final size:27
Alignment explanation
Indices: 67573416--67573595 Score: 252
Period size: 28 Copynumber: 6.6 Consensus size: 27
67573406 TAAATTGTGC
*
67573416 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
67573443 AGCACTAAGTGTGCAAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
67573471 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
67573499 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
67573527 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* * *
67573554 AGCACTAAGTGAGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
67573581 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67573596 GACTTAATAT
Statistics
Matches: 143, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 63 0.44
28 80 0.56
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:67573589 original size:23 final size:24
Alignment explanation
Indices: 67573511--67573589 Score: 70
Period size: 27 Copynumber: 3.0 Consensus size: 24
67573501 CACTAAGTGT
* *
67573511 GCGAGCTTGATTATGTAGCACTAAGTGT
1 GCGAG-TTGATTATATAGCAC--A-TGA
67573539 GCGAGTTGATTATATAGCACTAAGTGA
1 GCGAGTTGATTATATAGCAC--A-TGA
67573566 GCGAGTTGATTATATAGCAC-TGA
1 GCGAGTTGATTATATAGCACATGA
67573589 G
1 G
67573590 TGTGCGGACT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
23 4 0.08
27 40 0.82
28 5 0.10
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (24 bp):
GCGAGTTGATTATATAGCACATGA
Found at i:67577205 original size:46 final size:45
Alignment explanation
Indices: 67577111--67577326 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 45
67577101 CGTGCTGACT
* * * *
67577111 CATGTCCCAGACATGTCTTACACTAGC-ACATCTCGTA-GCCAACG
1 CATGTCCCAGACATGTCTTACATTGGCTACATCTCG-AGGCCGATG
*
67577155 CATGTCCCAGACATGTCTGACATTGGCTAACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACATTGGCT-ACATCTCGAGGCCGATG
* *
67577201 CATGTCCCAGACATGTCTTACATTGGATCT-CATACT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACATTGG--CTACAT-CTCGAGGCCGATG
* * * * *
67577247 CATGTCCCAGACATGTCTTACACTAGCCCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACA-TTG-GCTACATCTCGAGGCCGATG
* *
67577293 CCATGTCCCATACATGGTCTTACAATGGCATACA
1 -CATGTCCCAGACAT-GTCTTACATTGGC-TACA
67577327 AATCTCATGT
Statistics
Matches: 139, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 24 0.17
45 3 0.02
46 82 0.59
47 19 0.14
48 11 0.08
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACATTGGCTACATCTCGAGGCCGATG
Found at i:67583618 original size:49 final size:49
Alignment explanation
Indices: 67583573--67583804 Score: 266
Period size: 49 Copynumber: 4.7 Consensus size: 49
67583563 CTGGTACGCA
* * *
67583573 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** ** *
67583622 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * * *
67583672 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* *
67583723 TAGTAGCCTTCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* *
67583772 TAGTAGCCTACACTCAGTACTACACACGTGACC
1 TAGTAGCCTACACTTAGTACTACACACGCGACC
67583805 TCACAATAGA
Statistics
Matches: 151, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 69 0.46
50 46 0.30
51 36 0.24
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:67583746 original size:101 final size:98
Alignment explanation
Indices: 67583573--67583803 Score: 282
Period size: 100 Copynumber: 2.3 Consensus size: 98
67583563 CTGGTACGCA
* * * * *
67583573 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCGGTACACATAGTAGCCTACACTTA
* **
67583638 GTACTACACACGTGACCTAACCATTTGATACACG
66 GTACTACACACGCGACC-AACCATCCGATACACG
* * *
67583672 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCATAGTAGCCTTCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATCCGGTACACATAGTAGCCTACACT
* ** *
67583737 TAGTACTACACATGCGACCAATTATCCGGTACACG
64 TAGTACTACACACGCGACCAACCATCCGATACACG
* *
67583772 TAGTAGCCTACACTCAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
67583804 CTCACAATAG
Statistics
Matches: 113, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 29 0.26
100 43 0.38
101 41 0.36
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCGGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:67596818 original size:20 final size:20
Alignment explanation
Indices: 67596790--67596831 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
67596780 ATGGTAGCCA
*
67596790 TAAATGGTAATTAAACCATT
1 TAAAAGGTAATTAAACCATT
67596810 TAAAAGGTAATTAAACCATT
1 TAAAAGGTAATTAAACCATT
67596830 TA
1 TA
67596832 TATGTTTAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (20 bp):
TAAAAGGTAATTAAACCATT
Found at i:67600021 original size:6 final size:6
Alignment explanation
Indices: 67600010--67600127 Score: 96
Period size: 6 Copynumber: 19.0 Consensus size: 6
67600000 AATTAGGTGA
* * *
67600010 CAGAAT CAGAAT CAGAAT TAG-GT GACAGAAT CAGAAT CAGAAT CAGTAT
1 CAGAAT CAGAAT CAGAAT CAGAAT --CAGAAT CAGAAT CAGAAT CAGAAT
* * * *
67600059 CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT CAGTAT CAGATAA
1 CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT CAGA-AT
*
67600109 CAGAAT CAAAAAT CAGAAT
1 CAGAAT C-AGAAT CAGAAT
67600128 GTGAATGCAA
Statistics
Matches: 88, Mismatches: 16, Indels: 16
0.73 0.13 0.13
Matches are distributed among these distances:
5 3 0.03
6 68 0.77
7 15 0.17
8 2 0.02
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:67600027 original size:31 final size:30
Alignment explanation
Indices: 67599983--67600054 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 30
67599973 AAGAAACATT
67599983 ATCAGAA-CTAGAATCAAAATTAGGTGACAGA
1 ATCAGAATC-AGAATC-AAATTAGGTGACAGA
67600014 ATCAGAATCAG-----AATTAGGTGACAGA
1 ATCAGAATCAGAATCAAATTAGGTGACAGA
67600039 ATCAGAATCAGAATCA
1 ATCAGAATCAGAATCA
67600055 GTATCAGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
25 25 0.71
31 9 0.26
32 1 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.19
Consensus pattern (30 bp):
ATCAGAATCAGAATCAAATTAGGTGACAGA
Found at i:67600049 original size:25 final size:25
Alignment explanation
Indices: 67599992--67600073 Score: 114
Period size: 25 Copynumber: 3.3 Consensus size: 25
67599982 TATCAGAACT
*
67599992 AGAATCAAAATTAGGTGACAGAATC
1 AGAATCAGAATTAGGTGACAGAATC
67600017 AGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATTAGGTGACAGAATC
*
67600042 AGAATCAGAATCA-GT-ATCAGAATC
1 AGAATCAGAATTAGGTGA-CAGAATC
*
67600066 AGTATCAG
1 AGAATCAG
67600074 GTAACAGAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 1 0.02
24 16 0.30
25 36 0.68
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATTAGGTGACAGAATC
Found at i:67600063 original size:43 final size:43
Alignment explanation
Indices: 67600014--67600116 Score: 152
Period size: 43 Copynumber: 2.4 Consensus size: 43
67600004 AGGTGACAGA
* * *
67600014 ATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGT
1 ATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAATCAGT
*
67600057 ATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATCAGT
1 ATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAATCAGT
*
67600100 ATCAGATAACAGAATCA
1 ATCAGA-ATCAGAATCA
67600117 AAAATCAGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 45 0.85
44 8 0.15
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (43 bp):
ATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAATCAGT
Found at i:67600082 original size:31 final size:31
Alignment explanation
Indices: 67600039--67600127 Score: 126
Period size: 31 Copynumber: 2.9 Consensus size: 31
67600029 AGGTGACAGA
* **
67600039 ATCAGA-ATCAGAATCAGTATCAGAATCAGT
1 ATCAGATAACAGAATCAAAATCAGAATCAGT
*
67600069 ATCAGGTAACAGAATCAAAATCAGAATCAGT
1 ATCAGATAACAGAATCAAAATCAGAATCAGT
67600100 ATCAGATAACAGAATCAAAAATCAGAAT
1 ATCAGATAACAGAATC-AAAATCAGAAT
67600128 GTGAATGCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
30 5 0.10
31 36 0.69
32 11 0.21
ACGTcount: A:0.49, C:0.16, G:0.15, T:0.20
Consensus pattern (31 bp):
ATCAGATAACAGAATCAAAATCAGAATCAGT
Found at i:67600306 original size:27 final size:26
Alignment explanation
Indices: 67600264--67600365 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
67600254 GCTCAGTTAT
* *
67600264 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
67600291 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
67600317 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
67600345 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
67600366 TTAAACAAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:67600552 original size:22 final size:22
Alignment explanation
Indices: 67600524--67600588 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
67600514 GTAAATACGT
67600524 TTGGCACAGAGCCATAATCAGG
1 TTGGCACAGAGCCATAATCAGG
*
67600546 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAGAGCCATAAT-CAGG
* *
67600568 TTGACACAAAGCCATAATCAG
1 TTGGCACAGAGCCATAATCAG
67600589 AAGGCTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAGAGCCATAATCAGG
Found at i:67601073 original size:27 final size:27
Alignment explanation
Indices: 67601033--67601363 Score: 373
Period size: 27 Copynumber: 12.3 Consensus size: 27
67601023 TACCCCACAA
* * *
67601033 GGTATCTCGGTAATT-TCACCCCACAGG
1 GGTATTTCGATAATTCT-ACCCTACAGG
**
67601060 GGTATTTTAATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
67601087 GGAATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
67601114 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
67601141 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
67601168 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* * *
67601195 GGTATTCCGGTAATTCTACCCTACAAG
1 GGTATTTCGATAATTCTACCCTACAGG
*
67601222 GGTATTCCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
67601249 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* * **
67601276 GGTATTTCGGTAATTTTA-CAAACTAGG
1 GGTATTTCGATAATTCTACCCTAC-AGG
* * * **
67601303 GGTATTTTGGTAATTTTA-CAAACTAGG
1 GGTATTTCGATAATTCTACCCTAC-AGG
* *
67601330 GGTATTTTG-TAATTCTATCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
67601356 GGTATTTC
1 GGTATTTC
67601364 AGTAATTTCA
Statistics
Matches: 275, Mismatches: 26, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
26 20 0.07
27 254 0.92
28 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTATTTCGATAATTCTACCCTACAGG
Found at i:67601493 original size:81 final size:81
Alignment explanation
Indices: 67601380--67601537 Score: 217
Period size: 81 Copynumber: 2.0 Consensus size: 81
67601370 TTCACAATTA
* * * *
67601380 AGGGTAAAACAGTAATTTTGTAAACAGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACA
1 AGGGTAAAACAGTAATTTTATAAACAGAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAACA
67601445 GTAATTTTGTAATTCG
66 GTAATTTTGTAATTCG
* * ** ***
67601461 AGGGTGAAACGGTAATTTTATAAATTGAGGGTAAAATGGTAATTCTACAAATCGAGGGCATTTCA
1 AGGGTAAAACAGTAATTTTATAAACAGAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAACA
67601526 GTAATTTTGTAA
66 GTAATTTTGTAA
67601538 ACCAATGGTA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (81 bp):
AGGGTAAAACAGTAATTTTATAAACAGAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAACA
GTAATTTTGTAATTCG
Found at i:67601501 original size:27 final size:27
Alignment explanation
Indices: 67601375--67601518 Score: 146
Period size: 27 Copynumber: 5.3 Consensus size: 27
67601365 GTAATTTCAC
* * *
67601375 AATTAAGGGTAAAACAGTAATTTTGTA
1 AATTGAGGGTAAAACGGTAATTTTATA
** *
67601402 AACAGAGGGTAAAATGGTAATTTTATA
1 AATTGAGGGTAAAACGGTAATTTTATA
* * *
67601429 AATCGAGGGTAAAACAGTAATTTTGT-
1 AATTGAGGGTAAAACGGTAATTTTATA
*
67601455 AATTCGAGGGTGAAACGGTAATTTTATA
1 AATT-GAGGGTAAAACGGTAATTTTATA
* * *
67601483 AATTGAGGGTAAAATGGTAATTCTACA
1 AATTGAGGGTAAAACGGTAATTTTATA
*
67601510 AATCGAGGG
1 AATTGAGGG
67601519 CATTTCAGTA
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 3 0.03
27 88 0.93
28 4 0.04
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.30
Consensus pattern (27 bp):
AATTGAGGGTAAAACGGTAATTTTATA
Found at i:67601504 original size:54 final size:54
Alignment explanation
Indices: 67601375--67601496 Score: 183
Period size: 54 Copynumber: 2.3 Consensus size: 54
67601365 GTAATTTCAC
* *
67601375 AATTAAGGGTAAAACAGTAATTTTGTAAACAGAGGGTAAAATGGTAATTTTATA
1 AATTGAGGGTAAAACAGTAATTTTGTAAACAGAGGGTAAAACGGTAATTTTATA
* * *
67601429 AATCGAGGGTAAAACAGTAATTTTGTAATTC-GAGGGTGAAACGGTAATTTTATA
1 AATTGAGGGTAAAACAGTAATTTTGTAA-ACAGAGGGTAAAACGGTAATTTTATA
67601483 AATTGAGGGTAAAA
1 AATTGAGGGTAAAA
67601497 TGGTAATTCT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 60 0.98
55 1 0.02
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.30
Consensus pattern (54 bp):
AATTGAGGGTAAAACAGTAATTTTGTAAACAGAGGGTAAAACGGTAATTTTATA
Found at i:67601579 original size:29 final size:27
Alignment explanation
Indices: 67601509--67601606 Score: 83
Period size: 27 Copynumber: 3.6 Consensus size: 27
67601499 GTAATTCTAC
* *
67601509 AAATCGAGGGCATTTC-AGTAATTTTGT-
1 AAATCAAGGGTATTTCTA-TAATTTT-TA
* *
67601536 AAACCAATGGTATTTCTATAATTTTTAA
1 AAATCAAGGGTATTTCTATAATTTTT-A
* *
67601564 AAAGTCAAGGGTATTTTTATAATTTTTT
1 AAA-TCAAGGGTATTTCTATAATTTTTA
*
67601592 AAATCAGGGGTATTT
1 AAATCAAGGGTATTT
67601607 TGGTAATTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
26 1 0.02
27 30 0.52
28 7 0.12
29 20 0.34
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.42
Consensus pattern (27 bp):
AAATCAAGGGTATTTCTATAATTTTTA
Found at i:67601711 original size:81 final size:81
Alignment explanation
Indices: 67601573--67601723 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
67601563 AAAAGTCAAG
* ** * **
67601573 GGTATTTTTATAATTTTTTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGT
1 GGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACAGAGGGTATTTCGGT
67601638 AATTTCACAAACCAGT
66 AATTTCACAAACCAGT
*
67601654 GGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGG
1 GGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAA-CAGAGGGTATTTCGG
67601718 TAATTT
65 TAATTT
67601724 GGTAAACTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
81 61 0.98
82 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (81 bp):
GGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACAGAGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:67601730 original size:27 final size:27
Alignment explanation
Indices: 67601572--67601723 Score: 189
Period size: 27 Copynumber: 5.6 Consensus size: 27
67601562 AAAAAGTCAA
** ** *
67601572 GGGTATTTTTATAATTTTTTAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
**
67601599 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
67601625 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* *
67601653 TGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
67601680 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
67601707 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
67601724 GGTAAACTAA
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 105 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:67603267 original size:6 final size:6
Alignment explanation
Indices: 67603256--67603373 Score: 87
Period size: 6 Copynumber: 19.0 Consensus size: 6
67603246 AATTAGGTGA
* * * *
67603256 CAGAAT CAGAAT CAGAAT TAG-GT GACAAAAT CAGAAT CAGAAT CAGTAT
1 CAGAAT CAGAAT CAGAAT CAGAAT --CAGAAT CAGAAT CAGAAT CAGAAT
* * * *
67603305 CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT CAGTAT CAGATAA
1 CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT CAGA-AT
*
67603355 CAGAAT CAAATAT CAGAAT
1 CAGAAT CAGA-AT CAGAAT
67603374 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 18, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
5 3 0.03
6 67 0.78
7 14 0.16
8 2 0.02
ACGTcount: A:0.48, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
CAGAAT
Found at i:67603295 original size:25 final size:25
Alignment explanation
Indices: 67603238--67603298 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
67603228 TATCAGAACT
* *
67603238 AGAATCAAAATTAGGTGACAGAATC
1 AGAATCAGAATTAGGTGACAAAATC
67603263 AGAATCAGAATTAGGTGACAAAATC
1 AGAATCAGAATTAGGTGACAAAATC
67603288 AGAATCAGAAT
1 AGAATCAGAAT
67603299 CAGTATCAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATTAGGTGACAAAATC
Found at i:67603308 original size:43 final size:43
Alignment explanation
Indices: 67603260--67603362 Score: 143
Period size: 43 Copynumber: 2.4 Consensus size: 43
67603250 AGGTGACAGA
* * *
67603260 ATCAGAATCAGAATTAGGTGACAAAATCAGAATCAGAATCAGT
1 ATCAGAATCAGAATCAGGTAACAAAATCAAAATCAGAATCAGT
* *
67603303 ATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATCAGT
1 ATCAGAATCAGAATCAGGTAACAAAATCAAAATCAGAATCAGT
*
67603346 ATCAGATAACAGAATCA
1 ATCAGA-ATCAGAATCA
67603363 AATATCAGAA
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
43 44 0.85
44 8 0.15
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.20
Consensus pattern (43 bp):
ATCAGAATCAGAATCAGGTAACAAAATCAAAATCAGAATCAGT
Found at i:67603328 original size:31 final size:31
Alignment explanation
Indices: 67603285--67603373 Score: 126
Period size: 31 Copynumber: 2.9 Consensus size: 31
67603275 AGGTGACAAA
* *
67603285 ATCAGA-ATCAGAATCAGTATCAGAATCAGT
1 ATCAGATAACAGAATCAATATCAGAATCAGT
* *
67603315 ATCAGGTAACAGAATCAAAATCAGAATCAGT
1 ATCAGATAACAGAATCAATATCAGAATCAGT
67603346 ATCAGATAACAGAATCAAATATCAGAAT
1 ATCAGATAACAGAATC-AATATCAGAAT
67603374 GTGAATGCAA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
30 5 0.10
31 36 0.71
32 10 0.20
ACGTcount: A:0.48, C:0.16, G:0.15, T:0.21
Consensus pattern (31 bp):
ATCAGATAACAGAATCAATATCAGAATCAGT
Found at i:67603552 original size:27 final size:26
Alignment explanation
Indices: 67603510--67603611 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
67603500 GCTCAGTTAT
* * *
67603510 CAGATACTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
67603537 CAGATATTGTGGCAGAGCCACCATAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
67603563 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
67603591 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
67603612 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.77
28 8 0.12
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:67603637 original size:54 final size:54
Alignment explanation
Indices: 67603528--67603629 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
67603518 GTGACAGAGT
* * * ** *
67603528 CACCAGATACAGATATTGTGGCAGAGCCACCATAACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATAATGTGGCAAAGCCACCATAACAGATATACGTGGCAAAGC
*
67603582 CACCAGAAACAGATAATGTGGCAAAGCCA-CTTAACAGA-ATACGTGGCA
1 CACCAGAAACAGATAATGTGGCAAAGCCACCATAACAGATATACGTGGCA
67603630 CAAAGCCATC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
52 8 0.19
53 8 0.19
54 26 0.62
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.19
Consensus pattern (54 bp):
CACCAGAAACAGATAATGTGGCAAAGCCACCATAACAGATATACGTGGCAAAGC
Found at i:67603814 original size:22 final size:21
Alignment explanation
Indices: 67603770--67603829 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 21
67603760 GCAAATACGT
*
67603770 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCAT-ATCAGG
* *
67603792 TTGGCACAGAGCCATATGTAGG
1 TTGGCACAAAGCCATAT-CAGG
**
67603814 TTAACACAAAGCCATA
1 TTGGCACAAAGCCATA
67603830 ATTAGAAGGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 2 0.06
22 30 0.94
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAAGCCATATCAGG
Found at i:67604317 original size:27 final size:27
Alignment explanation
Indices: 67604260--67604695 Score: 531
Period size: 27 Copynumber: 16.3 Consensus size: 27
67604250 GGGGTAAAAT
* * * *
67604260 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67604286 GGTAATTCCACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67604313 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67604340 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67604367 GGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67604394 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
67604421 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67604448 GGTAATTCTACCTTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67604475 GGTAATTCTATCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67604502 GATAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67604529 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67604556 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67604583 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
67604610 GGTAATTTTA-CAAACTAGGGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* * *
67604637 GGTAATTTTA--CAACTA-GGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* *
67604662 GGTAATTCTATCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67604689 AGTAATT
1 GGTAATT
67604696 TCACAATCGA
Statistics
Matches: 359, Mismatches: 46, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
25 18 0.05
26 21 0.06
27 320 0.89
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:67604774 original size:54 final size:54
Alignment explanation
Indices: 67604707--67604875 Score: 223
Period size: 54 Copynumber: 3.1 Consensus size: 54
67604697 CACAATCGAT
* *
67604707 GGTAAAACAGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCAAG
1 GGTAAAACAGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATAAATCAAG
* * * *
67604761 GGTAAAACGGTAATTCTATAAATCGAGGGTAAAATTGTAATTCTATAAATCAAG
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAG
* * * * *
67604815 GGTAAAACAGTAATTTTGTAAATCAAGGGTGAAACGATAATTCTATAAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAG
67604869 GGTAAAA
1 GGTAAAA
67604876 TGGTAATTCT
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 98 0.99
55 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.21, T:0.29
Consensus pattern (54 bp):
GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAG
Found at i:67604817 original size:81 final size:81
Alignment explanation
Indices: 67604732--67604891 Score: 266
Period size: 81 Copynumber: 2.0 Consensus size: 81
67604722 TTGTAAACTG
** * *
67604732 AGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATT
1 AGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
*
67604797 GTAATTCTATAAATCA
66 GTAATTCTACAAATCA
*
67604813 AGGGTAAAACAGTAATTTTGTAAATCAAGGGTGAAACGATAATTCTATAAATCGAGGGTAAAATG
1 AGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
67604878 GTAATTCTACAAAT
66 GTAATTCTACAAAT
67604892 TGAGGGCATT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.29
Consensus pattern (81 bp):
AGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
GTAATTCTACAAATCA
Found at i:67604896 original size:27 final size:27
Alignment explanation
Indices: 67604700--67604897 Score: 200
Period size: 27 Copynumber: 7.3 Consensus size: 27
67604690 GTAATTTCAC
* * * *
67604700 AATCGATGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
67604727 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
*
67604754 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
67604781 AATCGAGGGTAAAATTGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
67604808 AATCAAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
67604835 AATCAAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
67604862 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
67604889 AATTGAGGG
1 AATCGAGGG
67604898 CATTTCAGTA
Statistics
Matches: 143, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 141 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:67604937 original size:81 final size:81
Alignment explanation
Indices: 67604743--67604921 Score: 214
Period size: 81 Copynumber: 2.2 Consensus size: 81
67604733 GGGTAAAATG
* * * * * * *
67604743 GTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATTGTAATTCTATA
1 GTAATTCTGTAAACCAAGAGTGAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
*
67604808 AATCAAGGGTAAAACA
66 AATCAAGGGCAAAACA
* * *
67604824 GTAATTTTGTAAATCAAGGGTGAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
1 GTAATTCTGTAAACCAAGAGTGAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
** ***
67604889 AATTGAGGGCATTTCA
66 AATCAAGGGCAAAACA
67604905 GTAATTCTGTAAACCAA
1 GTAATTCTGTAAACCAA
67604922 TAGTATTTCT
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 86 1.00
ACGTcount: A:0.41, C:0.10, G:0.19, T:0.30
Consensus pattern (81 bp):
GTAATTCTGTAAACCAAGAGTGAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
AATCAAGGGCAAAACA
Found at i:67604991 original size:27 final size:27
Alignment explanation
Indices: 67604949--67605155 Score: 204
Period size: 27 Copynumber: 7.7 Consensus size: 27
67604939 TTAGAAAGTC
* ** *
67604949 AAGGGTATTTTTGTAATTTTGTAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
**
67604976 AAGGGTATTTTGGTAATTTTACAATTT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * *
67605003 GAGGGTATTTCGGTAATTTCAC-AAC-
1 AAGGGTATTTTGGTAATTTTACAAACT
* * *
67605028 CAGTGGTATTTTGATAATTTTACAAACC
1 AAG-GGTATTTTGGTAATTTTACAAACT
*
67605056 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * *
67605083 AGGGGTATTTTGGTAATTTTATAAACA
1 AAGGGTATTTTGGTAATTTTACAAACT
*
67605110 AAGGGTATTTTAGTAATTTTACAAAC-
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
67605136 CAGGGATATTTTGATAATTT
1 AAGGG-TATTTTGGTAATTT
67605156 GGTAAACTAA
Statistics
Matches: 151, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
25 2 0.01
26 21 0.14
27 127 0.84
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:67606347 original size:27 final size:27
Alignment explanation
Indices: 67606246--67606348 Score: 91
Period size: 27 Copynumber: 3.8 Consensus size: 27
67606236 ATACTTTAGT
* *
67606246 TTACCAAATTATTGAAATACCCTCGAC
1 TTACAAAATTACTGAAATACCCTCGAC
** * *
67606273 TTGTAAAATTAC-CAAAGTACCCCCGAC
1 TTACAAAATTACTGAAA-TACCCTCGAC
* *** *
67606300 TTACAGAATTACTGTTTTACCCTCGAT
1 TTACAAAATTACTGAAATACCCTCGAC
67606327 TTACAAAATTACTGAAATACCC
1 TTACAAAATTACTGAAATACCC
67606349 CTGTAGGGTA
Statistics
Matches: 55, Mismatches: 19, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.30
Consensus pattern (27 bp):
TTACAAAATTACTGAAATACCCTCGAC
Found at i:67606363 original size:27 final size:27
Alignment explanation
Indices: 67606333--67606801 Score: 498
Period size: 27 Copynumber: 17.2 Consensus size: 27
67606323 CGATTTACAA
*
67606333 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
67606360 AATTACTAATTACTGAAATACCC-TATAGGGTAG
1 -A--A-T---TACTGAAATACCCTTGTAGGGTAG
* *
67606393 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* **
67606420 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
67606447 AATTATTGAAATACCCTTGTAGGGTA-
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
67606473 AAATACCGAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* **
67606500 AATTACCGAAATACATTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * * *
67606527 AAATACAGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
67606554 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
67606581 AATTACTAAAATACCCTTGTATGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
67606608 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
67606635 AATTACTGAAATACTCC-TATAAGGTAG
1 AATTACTGAAATAC-CCTTGTAGGGTAG
* * *
67606662 AATTACCGAAAAAACCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
67606689 AATTACTGAAACACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
67606716 AATTACCGAAATACCTTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
67606743 AAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* * * *
67606770 AATTACTGAGATA-CCTCGTGGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
67606796 AATTAC
1 AATTAC
67606802 CATTTTGCCC
Statistics
Matches: 370, Mismatches: 59, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
26 51 0.14
27 288 0.78
28 4 0.01
29 1 0.00
30 2 0.01
31 1 0.00
32 1 0.00
33 9 0.02
34 13 0.04
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:67606394 original size:33 final size:34
Alignment explanation
Indices: 67606333--67606398 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 34
67606323 CGATTTACAA
*
67606333 AATTACTGAAATACCCCTGTAGGGTAGAATTACT
1 AATTACTGAAATACCCCTATAGGGTAGAATTACT
67606367 AATTACTGAAATA-CCCTATAGGGTAGAATTAC
1 AATTACTGAAATACCCCTATAGGGTAGAATTAC
67606399 CGAAATACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 18 0.58
34 13 0.42
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (34 bp):
AATTACTGAAATACCCCTATAGGGTAGAATTACT
Found at i:67607162 original size:22 final size:22
Alignment explanation
Indices: 67607130--67607188 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
67607120 CCCATTATCG
*
67607130 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
67607152 ATGGCTTTGTGCCATCTTGATT
1 ATGGCTTTGTGCCAACCTAAAT
*
67607174 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
67607189 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:67609964 original size:48 final size:47
Alignment explanation
Indices: 67609893--67610095 Score: 228
Period size: 47 Copynumber: 4.5 Consensus size: 47
67609883 ATGAAAAAAT
67609893 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT-TAAC
* * * *
67609941 GTGGTGCTAAGTGGATATGCCACGATTACATATATTGATTCATTAAT
1 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATTAAC
**
67609988 GTGGTGCTAAGTGGATATA-C-C-A-T-GGC-TA---A-ACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT-TAAC
* * * *
67610026 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATTAAC
67610073 GTGGTGCTAAGTGGATATACCAC
1 GTGGTGCTAAGTGGATATACCAC
67610096 AGTTAAACAT
Statistics
Matches: 127, Mismatches: 17, Indels: 23
0.76 0.10 0.14
Matches are distributed among these distances:
37 3 0.02
38 22 0.17
39 1 0.01
40 1 0.01
41 2 0.02
42 1 0.01
43 1 0.01
44 3 0.02
45 1 0.01
46 1 0.01
47 48 0.38
48 43 0.34
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATTAAC
Found at i:67610039 original size:38 final size:38
Alignment explanation
Indices: 67609988--67610133 Score: 150
Period size: 38 Copynumber: 3.6 Consensus size: 38
67609978 ATTCATTAAT
*
67609988 GTGGTGCTAAGTGGATATACCATGGCTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGCTAAACATGTAAC
*
67610026 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT-TAAC
1 GTGGTGCTAAGTGGATATACCACGG---C-TA-A---A--CATGTAAC
* *
67610073 GTGGTGCTAAGTGGATATACCACAGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGCTAAACATGTAAC
*
67610111 GTGGTGCTAAGTGGATATGCCAC
1 GTGGTGCTAAGTGGATATACCAC
67610134 AGTTATACAT
Statistics
Matches: 91, Mismatches: 6, Indels: 22
0.76 0.05 0.18
Matches are distributed among these distances:
37 3 0.03
38 49 0.54
39 1 0.01
41 1 0.01
42 3 0.03
43 3 0.03
46 1 0.01
47 27 0.30
48 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGCTAAACATGTAAC
Found at i:67610077 original size:85 final size:85
Alignment explanation
Indices: 67609932--67610138 Score: 360
Period size: 85 Copynumber: 2.4 Consensus size: 85
67609922 ACATATTGAT
* *
67609932 ACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACATATATTGATTCATTAATGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
**
67609997 AGTGGATATACCATGGCTAA
66 AGTGGATATACCACAGCTAA
67610017 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
67610082 AGTGGATATACCACAGTTAA
66 AGTGGATATACCACAGCTAA
*
67610102 ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
67610139 TACATGTTAA
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 116 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTGGATATACCACAGCTAA
Found at i:67610134 original size:38 final size:38
Alignment explanation
Indices: 67610069--67610145 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
67610059 ATTGATTCAT
67610069 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
* *
67610107 TAACGTGGTGCTAAGTGGATATGCCACAGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
67610145 T
1 T
67610146 TAATTTGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
Found at i:67614570 original size:25 final size:25
Alignment explanation
Indices: 67614542--67614589 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67614532 TTATAATATG
** *
67614542 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
67614567 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
67614590 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:67614791 original size:25 final size:24
Alignment explanation
Indices: 67614720--67614796 Score: 73
Period size: 25 Copynumber: 3.1 Consensus size: 24
67614710 GAGGAAGTGC
* * * *
67614720 AAAAGGGCTATGCCCCAATTACCG
1 AAAAGGGCTTTGCCCCAGTTATCA
*
67614744 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAG-TTATCA
* *
67614769 AAAAGGGTTTTTGCCCCAGTTATTA
1 AAAAGGG-CTTTGCCCCAGTTATCA
67614794 AAA
1 AAA
67614797 GAGGCTAGGC
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
24 15 0.35
25 19 0.44
26 9 0.21
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTATCA
Found at i:67615047 original size:31 final size:31
Alignment explanation
Indices: 67615009--67615092 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
67614999 TCGTTACAGT
67615009 AAAGGCTTTGGCCCAGTGATATGAATAATGA
1 AAAGGCTTTGGCCCAGTGATATGAATAATGA
* * *
67615040 AAAGGCTTTGGCCTAGTGACATGAATAATGT
1 AAAGGCTTTGGCCCAGTGATATGAATAATGA
* *
67615071 GAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTTGGCCCAGTGATATG
67615093 CTGAGATTGA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 4 0.09
31 42 0.91
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAGTGATATGAATAATGA
Found at i:67618252 original size:40 final size:40
Alignment explanation
Indices: 67618190--67618367 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
67618180 AAGCCAAGTA
* * * *
67618190 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
67618229 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
67618269 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
67618309 CCTTCGGGACTTAGCCCGGGA-CTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCC-GGATATAGTAACTCGCACAAATG
67618349 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67618368 TTATCATCCA
Statistics
Matches: 124, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
39 14 0.11
40 108 0.87
41 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67622775 original size:43 final size:43
Alignment explanation
Indices: 67622713--67622808 Score: 149
Period size: 43 Copynumber: 2.3 Consensus size: 43
67622703 TCAAGACCAC
*
67622713 CAAAAG-AGAAGAAGAAGAAGTATTCAGCTTAGCCACTTGATA
1 CAAAAGAAGAAGAAGAAGAAGTATTCAGCTTAGCCACTAGATA
* *
67622755 CAAAAGAAGAAGAAGAAGAAGTATTCGGCTTAGTCACTAGATA
1 CAAAAGAAGAAGAAGAAGAAGTATTCAGCTTAGCCACTAGATA
*
67622798 TAAAAGAAGAA
1 CAAAAGAAGAA
67622809 AAAGTCGTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 6 0.12
43 43 0.88
ACGTcount: A:0.49, C:0.11, G:0.22, T:0.18
Consensus pattern (43 bp):
CAAAAGAAGAAGAAGAAGAAGTATTCAGCTTAGCCACTAGATA
Found at i:67630630 original size:46 final size:46
Alignment explanation
Indices: 67630566--67630672 Score: 196
Period size: 46 Copynumber: 2.3 Consensus size: 46
67630556 AGAACCAACA
67630566 AAGAAGAAGAAGAAGAAGTATTCAGCTTACCCACTAGATACAAAAG
1 AAGAAGAAGAAGAAGAAGTATTCAGCTTACCCACTAGATACAAAAG
*
67630612 AAGAAGAAGAAGAAGAAGTATTCAGCTTAGCCACTAGATACAAAAG
1 AAGAAGAAGAAGAAGAAGTATTCAGCTTACCCACTAGATACAAAAG
*
67630658 AAGAAGAAAAAGAAG
1 AAGAAGAAGAAGAAG
67630673 TCGTGAAGGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.53, C:0.12, G:0.21, T:0.13
Consensus pattern (46 bp):
AAGAAGAAGAAGAAGAAGTATTCAGCTTACCCACTAGATACAAAAG
Found at i:67632134 original size:22 final size:22
Alignment explanation
Indices: 67632092--67632135 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
67632082 TTATTTTTAA
67632092 ATTTTAATTTTATTAATATAAT
1 ATTTTAATTTTATTAATATAAT
67632114 ATTTTATATTATT-TTAA-ATAAT
1 ATTTTA-ATT-TTATTAATATAAT
67632136 TTTAGATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.55
23 7 0.35
24 2 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATTTTAATTTTATTAATATAAT
Found at i:67635498 original size:27 final size:26
Alignment explanation
Indices: 67635468--67635521 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
67635458 ATGCTCTTAT
* *
67635468 TAAAAATTAGAAAAATTTTATAAAAAA
1 TAAAAAATA-AAAAATTTTAGAAAAAA
*
67635495 TAAAAAATAATAAATTTTAGAAAAAA
1 TAAAAAATAAAAAATTTTAGAAAAAA
67635521 T
1 T
67635522 TATTAAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (26 bp):
TAAAAAATAAAAAATTTTAGAAAAAA
Found at i:67635539 original size:20 final size:20
Alignment explanation
Indices: 67635493--67635542 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
67635483 TTTTATAAAA
*
67635493 AATAAAAAATAATAAATTTT
1 AATAAAAATTAATAAATTTT
*
67635513 AGA-AAAAATTATTAAATTTT
1 A-ATAAAAATTAATAAATTTT
67635533 AATAAAAATT
1 AATAAAAATT
67635543 TAAGAATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
AATAAAAATTAATAAATTTT
Found at i:67642170 original size:46 final size:45
Alignment explanation
Indices: 67642103--67642277 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
67642093 TGTAACCCGC
* *
67642103 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGTAT
* * *
67642149 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGCATTCGTA--T
* * *
67642195 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGTAT
*
67642242 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
67642278 ATGCTCAATC
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
44 4 0.04
45 4 0.04
46 63 0.58
47 31 0.29
48 2 0.02
49 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGCATTCGTAT
Found at i:67642222 original size:93 final size:93
Alignment explanation
Indices: 67642110--67642281 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
67642100 CGCCCATAAG
* *
67642110 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGTATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
67642174 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
67642203 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67642268 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
67642282 TCAATCATCT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67642297 original size:46 final size:45
Alignment explanation
Indices: 67642152--67642297 Score: 147
Period size: 46 Copynumber: 3.2 Consensus size: 45
67642142 TTCGTATCCA
*
67642152 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-AT-CATC
* * *
67642200 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAAT--CAT-C
67642244 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAATCATC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAATCATC
*
67642291 TTAGTGA
1 TAAGTGA
67642298 CATGTCACTT
Statistics
Matches: 83, Mismatches: 7, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.05
44 2 0.02
45 2 0.02
46 35 0.42
47 30 0.36
48 5 0.06
50 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAATCATC
Found at i:67644382 original size:28 final size:28
Alignment explanation
Indices: 67644350--67644429 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 28
67644340 CATACATGCT
*
67644350 TATGGCCCACTAGGCCCAATCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCACATCT-A
*
67644378 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
*
67644407 TATGGCCTACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
67644430 TTTTACACTC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 22 0.48
29 23 0.50
30 1 0.02
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:67644410 original size:29 final size:28
Alignment explanation
Indices: 67644350--67644429 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 28
67644340 CATACATGCT
*
67644350 TATGGCCCACTAGGCCCAATCTCATTCA
1 TATGGCCCACTAGGCCCAATCACATTCA
*
67644378 TATGGCCCATTAGGCCCAAATCACA-TCTA
1 TATGGCCCACTAGGCCC-AATCACATTC-A
*
67644407 TATGGCCTACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
67644430 TTTTACACTC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 24 0.52
29 22 0.48
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATTCA
Found at i:67650499 original size:22 final size:21
Alignment explanation
Indices: 67650451--67650496 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 21
67650441 ATTCTATGCT
67650451 AATTGATAAAGATTAATATATA
1 AATT-ATAAAGATTAATATATA
67650473 AATTATAATAGATATAATAATATA
1 AATTATAA-AGAT-TAAT-ATATA
67650497 TTAAAGATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 4 0.19
24 5 0.24
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (21 bp):
AATTATAAAGATTAATATATA
Found at i:67657418 original size:46 final size:46
Alignment explanation
Indices: 67657368--67657543 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 46
67657358 TGGTTGAGCA
* *
67657368 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
*** * ** ** *
67657414 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTAAACG
* * *
67657461 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
67657507 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67657544 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 26, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
46 69 0.67
47 34 0.33
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:67657524 original size:93 final size:93
Alignment explanation
Indices: 67657365--67657535 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
67657355 GGATGGTTGA
* *
67657365 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
67657430 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * ** *
67657458 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
67657523 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
67657536 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:67660498 original size:15 final size:15
Alignment explanation
Indices: 67660478--67660531 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
67660468 ATATCTTGGG
67660478 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* * *
67660493 TCTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
67660508 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
67660523 TTTCTTTAT
1 TTTCTTTAT
67660532 TCGGTTTTCT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.11, C:0.19, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:67660508 original size:30 final size:30
Alignment explanation
Indices: 67660474--67660542 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
67660464 TATCATATCT
67660474 TGGGTTTCTTTATCCTGGATCTCTTTATTC
1 TGGGTTTCTTTATCCTGGATCTCTTTATTC
* * *
67660504 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCCTGGATCTCTTTATTC
*
67660534 -GGTTTTCTT
1 TGGGTTTCTT
67660543 GTTATCTTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.09, C:0.17, G:0.17, T:0.57
Consensus pattern (30 bp):
TGGGTTTCTTTATCCTGGATCTCTTTATTC
Found at i:67662976 original size:46 final size:46
Alignment explanation
Indices: 67662926--67663101 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
67662916 TGGTTGAGCA
*
67662926 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * ** *
67662972 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGAT--ATAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGAT-GC-AAACG
* * *
67663019 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
67663065 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67663102 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.65
47 33 0.31
48 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67663082 original size:93 final size:93
Alignment explanation
Indices: 67662923--67663093 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
67662913 GGATGGTTGA
* *
67662923 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
67662988 TGAGTCCGAGTTCGAGAGATATAACTAG
66 TGAGTCCGAGTTCGAGAGATATAACTAG
* * * *
67663016 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
67663081 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67663094 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATATAACTAG
Found at i:67673485 original size:12 final size:12
Alignment explanation
Indices: 67673470--67673500 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
67673460 TATCAGAACT
*
67673470 AGAATCAAAATG
1 AGAATCAAAATC
67673482 AGAATCAAAATC
1 AGAATCAAAATC
67673494 AGAATCA
1 AGAATCA
67673501 GGTGACAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.58, C:0.13, G:0.13, T:0.16
Consensus pattern (12 bp):
AGAATCAAAATC
Found at i:67673723 original size:27 final size:27
Alignment explanation
Indices: 67673661--67673756 Score: 104
Period size: 27 Copynumber: 3.6 Consensus size: 27
67673651 TTTTTTGTGA
* * *
67673661 CAGAGTCACCAGATAAAGATA-TTGTGG
1 CAGAGCCACCAGA-ACAGATATTTATGG
* *
67673688 TAGAGCCACTAGAACAGATATTTATGG
1 CAGAGCCACCAGAACAGATATTTATGG
* *
67673715 CGGAGCCACCAGAACAGATATTTGTGG
1 CAGAGCCACCAGAACAGATATTTATGG
*
67673742 CATAGCCACCAGAAC
1 CAGAGCCACCAGAAC
67673757 GCTTCCTCCA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 6 0.11
27 51 0.89
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGAGCCACCAGAACAGATATTTATGG
Found at i:67673988 original size:27 final size:27
Alignment explanation
Indices: 67673958--67674361 Score: 470
Period size: 27 Copynumber: 15.0 Consensus size: 27
67673948 GGGGCAAAAT
* *
67673958 GGTAATTTTATCCC-ACAAGGGTATCTC
1 GGTAATTCTA-CCCTACAAGGGTATTTC
* *
67673985 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67674012 GGTATTTCTACTCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67674039 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67674066 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
67674093 AATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67674120 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67674147 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67674174 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
67674201 AGTAATTCTACCTTACATGGCTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67674228 GGTATTTTTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
67674255 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67674282 AGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67674309 AGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
67674336 GGTAATTCTACCCTA-AAGGAGTATTT
1 GGTAATTCTACCCTACAAGG-GTATTT
67674362 TAGTAATTTT
Statistics
Matches: 322, Mismatches: 53, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 7 0.02
27 315 0.98
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:67676377 original size:42 final size:43
Alignment explanation
Indices: 67676298--67676378 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 43
67676288 AGGAATTTTT
*
67676298 TGATCTAAACTCATTGAATTGTAGTCTGAGTTTATGATTTATG
1 TGATCTAAACTCATTGAATTGTAGTCTGAGTTCATGATTTATG
* * * *
67676341 TGATTTAAACTCA-TGAGTTGTGGTTTGAGTTCATGATT
1 TGATCTAAACTCATTGAATTGTAGTCTGAGTTCATGATT
67676379 ATGAGACACA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 21 0.64
43 12 0.36
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (43 bp):
TGATCTAAACTCATTGAATTGTAGTCTGAGTTCATGATTTATG
Found at i:67680741 original size:47 final size:47
Alignment explanation
Indices: 67680660--67681054 Score: 558
Period size: 47 Copynumber: 8.4 Consensus size: 47
67680650 AATGTGAAAG
*
67680660 TGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
67680708 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * *
67680755 TGTGTATGTGTGAATAGGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * *
67680803 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * *
67680850 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
67680897 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * *
67680944 TGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAGCA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * * *
67680991 TGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-A
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
**
67681037 GTGTATAAATGTGATAAG
1 -TGTATATGTGTGATAAG
67681055 TCCCGAAGGG
Statistics
Matches: 319, Mismatches: 26, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 265 0.83
48 53 0.17
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (47 bp):
TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
Found at i:67681229 original size:37 final size:37
Alignment explanation
Indices: 67681173--67681252 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
67681163 CCGGGCTCTA
* * *
67681173 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
67681210 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
67681247 AAGACT
1 AAGACT
67681253 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:67683679 original size:47 final size:47
Alignment explanation
Indices: 67683620--67683813 Score: 334
Period size: 47 Copynumber: 4.1 Consensus size: 47
67683610 TAAGTTGAAT
67683620 TTAAAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
1 TTAAA-CTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
67683668 TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
1 TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
* *
67683715 TTAAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAATTTACTTAG
1 TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
* * *
67683762 TTAAGCTTATTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAG
1 TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
67683809 TTAAA
1 TTAAA
67683814 GAAAATTTTA
Statistics
Matches: 140, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
47 135 0.96
48 5 0.04
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (47 bp):
TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
Found at i:67684694 original size:45 final size:45
Alignment explanation
Indices: 67684629--67684789 Score: 213
Period size: 45 Copynumber: 3.6 Consensus size: 45
67684619 TATCGTACAG
*
67684629 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
67684674 TACTATTCAGGACTTTGAGCCAAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
67684719 TACTATTCGGGGCTTCAAGCCTAGCA-GCTATAATGTCGGTGAAA
1 TACTATTCGGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
67684763 TGA-TA-TC-GGGCTTCGAGCCTAGCAGGC
1 T-ACTATTCGGGGCTTCGAGCCTAGCAGGC
67684790 GAAATTTCGG
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
42 16 0.16
43 4 0.04
44 19 0.19
45 63 0.62
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (45 bp):
TACTATTCGGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:67685361 original size:16 final size:18
Alignment explanation
Indices: 67685330--67685362 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
67685320 AACTCATCAC
67685330 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
67685348 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
67685363 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:67692973 original size:3 final size:3
Alignment explanation
Indices: 67692965--67692989 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
67692955 TTTTATGAAA
67692965 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
67692990 GTAGTAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:67694840 original size:40 final size:40
Alignment explanation
Indices: 67694796--67695027 Score: 297
Period size: 40 Copynumber: 5.8 Consensus size: 40
67694786 ATAACCACAA
*
67694796 GCACAAATGCCTTCGGGTCTTAGCTCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
67694836 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
67694876 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
67694916 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
67694956 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67694996 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
67695028 CATTCAAATG
Statistics
Matches: 161, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 6 0.04
40 148 0.92
41 7 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:67694918 original size:80 final size:80
Alignment explanation
Indices: 67694776--67695026 Score: 414
Period size: 80 Copynumber: 3.1 Consensus size: 80
67694766 TCTTCGGAAT
* * * * * * * * *
67694776 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCTCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
67694840 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
67694855 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
67694920 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
67694935 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
67695000 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
67695015 TTAGCCCGGATA
1 TTAGCCCGGATA
67695027 TCATTCAAAT
Statistics
Matches: 162, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 4 0.02
80 158 0.98
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
AAATGCCTTCGGGTC
Found at i:67698390 original size:25 final size:25
Alignment explanation
Indices: 67698362--67698479 Score: 200
Period size: 25 Copynumber: 4.7 Consensus size: 25
67698352 GGAAGTGCAG
* *
67698362 AAGGGCTATGCCCCAGTTTATCGAA
1 AAGGGCTTTGCCCCAGTTTATCAAA
* *
67698387 AAGGGCTTTGCCCTAGTTTACCAAA
1 AAGGGCTTTGCCCCAGTTTATCAAA
67698412 AAGGGCTTTGCCCCAGTTTATCAAA
1 AAGGGCTTTGCCCCAGTTTATCAAA
67698437 AAGGGCTTTGCCCCAGTTTATCAAA
1 AAGGGCTTTGCCCCAGTTTATCAAA
67698462 AAGGGCTTTGCCCCAGTT
1 AAGGGCTTTGCCCCAGTT
67698480 ATTAAAAGAG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 87 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (25 bp):
AAGGGCTTTGCCCCAGTTTATCAAA
Found at i:67698503 original size:75 final size:75
Alignment explanation
Indices: 67698362--67698504 Score: 191
Period size: 75 Copynumber: 1.9 Consensus size: 75
67698352 GGAAGTGCAG
* * **
67698362 AAGGGCTATGCCCCAGTTTATCGAAAAGGGCTTTGCCCTAGTTTACCAAAAAGGGCTTTGCCCCA
1 AAGGGCTATGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAGGCCCCA
67698427 GTTTATCAAA
66 GTTTATCAAA
* **
67698437 AAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTC
1 AAGGGCTATGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAG-GGCTAGGCC-C
67698500 CAGTT
64 CAGTT
67698505 ATATGATAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
73 5 0.08
74 10 0.17
75 44 0.75
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (75 bp):
AAGGGCTATGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAGGCCCCA
GTTTATCAAA
Found at i:67709873 original size:40 final size:40
Alignment explanation
Indices: 67709799--67710020 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
67709789 AACCCAAGTA
* *
67709799 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
67709838 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
67709878 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
**
67709918 CCTTCGGGACTTAGCCCAAATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
67709958 CCTTCGAGACTTAGCCCGGATATAGTCAATAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
67709998 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67710021 CATTCGAATA
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 153 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:67714498 original size:48 final size:48
Alignment explanation
Indices: 67714427--67714777 Score: 522
Period size: 48 Copynumber: 7.1 Consensus size: 48
67714417 CAAGATAAAT
* *
67714427 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* * *
67714475 AGATATGTATAGGTAGTAAAGCCGAATGGCTAGTGTGAAATATGCATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
67714523 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
67714571 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
67714619 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCC-----G--AA--TG--GCTAGTGTGAAATATGTATG
67714678 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* *
67714726 AGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTAGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
67714774 AGAT
1 AGAT
67714778 GTGTGTATAT
Statistics
Matches: 278, Mismatches: 14, Indels: 22
0.89 0.04 0.07
Matches are distributed among these distances:
48 226 0.81
50 2 0.01
52 2 0.01
53 1 0.00
54 1 0.00
55 2 0.01
57 2 0.01
59 42 0.15
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
Found at i:67714676 original size:107 final size:107
Alignment explanation
Indices: 67714551--67714764 Score: 392
Period size: 107 Copynumber: 2.0 Consensus size: 107
67714541 AAGCCGAATG
67714551 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGC
1 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGC
67714616 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
67714658 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGC
* *
67714723 ATGAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAA
66 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
67714765 ATATGTAGGA
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
107 103 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.31
Consensus pattern (107 bp):
GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGC
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:67714968 original size:37 final size:37
Alignment explanation
Indices: 67714918--67715020 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
67714908 GGAAAAATAT
67714918 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
67714955 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
67714992 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
67715021 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:67716596 original size:40 final size:40
Alignment explanation
Indices: 67716299--67716587 Score: 497
Period size: 40 Copynumber: 7.2 Consensus size: 40
67716289 AGTTATATAG
* * * * *
67716299 CCGGGCTAAGTCCCGAAGAGCATTCGTGTTGGTGTTATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
67716339 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67716379 CTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
67716419 CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
67716459 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
67716499 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67716539 CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
67716579 CCGGGCTAA
1 CCGGGCTAA
67716588 ACCTCGAAGG
Statistics
Matches: 237, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 237 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:67716659 original size:28 final size:28
Alignment explanation
Indices: 67716619--67716743 Score: 135
Period size: 28 Copynumber: 4.4 Consensus size: 28
67716609 GAGTTATGAG
*
67716619 GCACTATGTGTGCAAGTTCTTTAA-CTGA
1 GCACTATGTGTGCGAGTTCTTTAATC-GA
* * * ** * *
67716647 GCACTATGCGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
* *
67716675 GGCACTATGTGTGCGAGTTCTTCAATCAA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
67716704 GCACTATGTGTGCGAGTTCTTTAATCGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
67716732 GCACTATGTGTG
1 GCACTATGTGTG
67716744 AGAAATCAGT
Statistics
Matches: 77, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
28 58 0.75
29 19 0.25
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATCGA
Found at i:67719943 original size:48 final size:48
Alignment explanation
Indices: 67719872--67720270 Score: 591
Period size: 48 Copynumber: 8.1 Consensus size: 48
67719862 CAAGATAAAT
* *
67719872 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* * *
67719920 AGATATGTATAGGTAGTAAAGCCGAATGGCTAGTGTGAAATATGCATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
67719968 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* *
67720016 AGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGCATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
67720064 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCC-----G--AA--TG--GCTAGTGTGAAATATGTATG
*
67720123 AGATGTGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
67720171 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* * *
67720219 AGATATGTTTATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
67720267 AGAT
1 AGAT
67720271 GTGTGTATAT
Statistics
Matches: 321, Mismatches: 19, Indels: 22
0.89 0.05 0.06
Matches are distributed among these distances:
48 270 0.84
50 2 0.01
52 2 0.01
53 1 0.00
54 1 0.00
55 2 0.01
57 2 0.01
59 41 0.13
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
Found at i:67720237 original size:155 final size:155
Alignment explanation
Indices: 67719948--67720257 Score: 548
Period size: 155 Copynumber: 2.0 Consensus size: 155
67719938 AAGCCGAATG
67719948 GCTAGTGTGAAATATGCATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 GCTAGTGTGAAATATGCATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* *
67720013 ATGAGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGCATGAGATATGTATATGT
66 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCATGAGATATGTATATGC
67720078 GGTAAAGCCGAATGGCTAATGTGAA
131 GGTAAAGCCGAATGGCTAATGTGAA
* * *
67720103 GCTAGTGTGAAATATGTATGAGATGTGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 GCTAGTGTGAAATATGCATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* *
67720168 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTTTATGC
66 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCATGAGATATGTATATGC
*
67720233 GGTAAAGCCGAATGGCTAGTGTGAA
131 GGTAAAGCCGAATGGCTAATGTGAA
67720258 ATATGTAGGA
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
155 147 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (155 bp):
GCTAGTGTGAAATATGCATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCATGAGATATGTATATGC
GGTAAAGCCGAATGGCTAATGTGAA
Found at i:67720461 original size:37 final size:37
Alignment explanation
Indices: 67720411--67720513 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
67720401 GGAAATATAT
*
67720411 TCCGGTTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
67720448 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
67720485 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
67720514 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:67723982 original size:40 final size:40
Alignment explanation
Indices: 67723810--67723975 Score: 244
Period size: 40 Copynumber: 4.2 Consensus size: 40
67723800 AACCCAAGTA
* * **
67723810 CCTTCGGGATTTAG-CCAGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
67723849 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
67723889 CCTTCGGGACTGAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
67723929 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67723969 CCTTCGG
1 CCTTCGG
67723976 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 13 0.11
40 101 0.89
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67744102 original size:37 final size:37
Alignment explanation
Indices: 67744052--67744125 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
67744042 GACCTATAAT
67744052 TTAAAATCTCATAACAATTGGACACCTTTAACATGTA
1 TTAAAATCTCATAACAATTGGACACCTTTAACATGTA
67744089 TTAAAATCTCATAACAATTGGACACCTTTAACATGTA
1 TTAAAATCTCATAACAATTGGACACCTTTAACATGTA
67744126 GAACTCAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (37 bp):
TTAAAATCTCATAACAATTGGACACCTTTAACATGTA
Found at i:67759103 original size:21 final size:21
Alignment explanation
Indices: 67759077--67759119 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
67759067 CCCAATGAGA
67759077 TAAGCCATTGGTGAGTATGTC
1 TAAGCCATTGGTGAGTATGTC
67759098 TAAGCCATTGGTGAGTATGTC
1 TAAGCCATTGGTGAGTATGTC
67759119 T
1 T
67759120 TTGAGTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (21 bp):
TAAGCCATTGGTGAGTATGTC
Found at i:67760791 original size:36 final size:36
Alignment explanation
Indices: 67760744--67760816 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
67760734 CGGATAAGGG
67760744 TGTTACAGATACCTTGCTAAATGGTGTCATTTTGAT
1 TGTTACAGATACCTTGCTAAATGGTGTCATTTTGAT
*
67760780 TGTTACAGATACCTTGCTAGATGGTGTCATTTTGAT
1 TGTTACAGATACCTTGCTAAATGGTGTCATTTTGAT
67760816 T
1 T
67760817 AACTTATGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (36 bp):
TGTTACAGATACCTTGCTAAATGGTGTCATTTTGAT
Found at i:67765585 original size:29 final size:29
Alignment explanation
Indices: 67765552--67765653 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
67765542 TGAATGTTAC
* *
67765552 TGGGCCTAACGGGCCATACAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
67765581 TGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
67765610 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
67765638 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
67765654 GATACAGGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 16 0.25
29 48 0.75
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:67765624 original size:58 final size:56
Alignment explanation
Indices: 67765552--67765666 Score: 149
Period size: 57 Copynumber: 2.0 Consensus size: 56
67765542 TGAATGTTAC
* * *
67765552 TGGGCCTAACGGGCCATACAAATGTGATTTGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAACGGGCCATACAAATATGA-TTGGGCCTAATGGGCCAGATACAGGT-ATT
* ** *
67765610 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGTATT
1 TGGGCCTAACGGGCCATACAAATATGATTGGGCCTAATGGGCCAGATACAGGTATT
67765666 T
1 T
67765667 TGTAAGGGGT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
56 4 0.08
57 23 0.46
58 23 0.46
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (56 bp):
TGGGCCTAACGGGCCATACAAATATGATTGGGCCTAATGGGCCAGATACAGGTATT
Found at i:67767513 original size:40 final size:39
Alignment explanation
Indices: 67767422--67767684 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
67767412 TCCTCGTTCA
* * * *
67767422 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
67767461 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
67767500 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
67767540 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGGAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
67767580 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
67767620 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
67767661 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
67767685 CAGCATTCAA
Statistics
Matches: 195, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 144 0.74
41 12 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:67767618 original size:120 final size:119
Alignment explanation
Indices: 67767422--67767684 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 119
67767412 TCCTCGTTCA
* * *
67767422 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATT
* * *
67767487 TAATAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAATAACTTAGCAC
* * *
67767540 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGGACA-AAGGCCTTCGGGGCTTAACCCGG
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTC--ACACAAGGCCTTCGGGACTTAACCCGG
* * ** * *
67767604 AATTT-GTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCAC
63 -ATTTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
*
67767661 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
67767685 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
119 34 0.28
120 76 0.62
121 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
Found at i:67767693 original size:41 final size:41
Alignment explanation
Indices: 67767616--67767693 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
67767606 TTTGTATCTC
* * *
67767616 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
67767657 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
67767694 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:67775505 original size:80 final size:79
Alignment explanation
Indices: 67775367--67775662 Score: 362
Period size: 80 Copynumber: 3.7 Consensus size: 79
67775357 TCCTCGTTCA
* * *
67775367 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
67775432 TAATAACTCGCACG
66 TAATAACTCGCACG
* * *
67775446 AATGCCTTCAGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGGAT
67775511 TTAATAACTCGCACG
65 TTAATAACTCGCACG
* * *
67775526 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCACACAAAGGCCTTCGGGGCTTAACCCGGAA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGG-A
* * *
67775591 TTT-GTATCTCGCACA
64 TTTAATAACTCGCACG
** * * * * *
67775606 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTA
1 AATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACAATGCCTTCGGGACTTA
67775663 GCCGGACAGC
Statistics
Matches: 188, Mismatches: 25, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
79 36 0.19
80 145 0.77
81 7 0.04
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
TAATAACTCGCACG
Found at i:67775629 original size:40 final size:40
Alignment explanation
Indices: 67775367--67775616 Score: 342
Period size: 40 Copynumber: 6.3 Consensus size: 40
67775357 TCCTCGTTCA
* * * * *
67775367 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
67775406 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
67775446 AATGCCTTCAGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
67775486 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
67775526 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCACACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
67775566 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
67775606 AATGCCTTCGG
1 AATGCCTTCGG
67775617 ATCTTAGTCC
Statistics
Matches: 194, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 34 0.18
40 156 0.80
41 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:67775629 original size:120 final size:119
Alignment explanation
Indices: 67775365--67775662 Score: 357
Period size: 120 Copynumber: 2.5 Consensus size: 119
67775355 GCTCCTCGTT
* * * *
67775365 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
* * *
67775430 TTTAATAACTCGCACGAATGCCTTCAGGACTTAACCCGGATTTAATAACTCGCA
66 TTTAATAACTCACACAAAGGCCTTCAGGACTTAACCCGGATTTAATAACTCGCA
* *
67775484 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
* * * * * *
67775549 ATTTAGTATCTCACACAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
65 ATTTAATAACTCACACAAAGGCCTTCAGGACTTAACCCGG-ATTTAATAACTCGCA
* * * * * *
67775604 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAATAAC-TCGCACAATGCCTTCGGGACTTA
67775663 GCCGGACAGC
Statistics
Matches: 152, Mismatches: 23, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
119 38 0.25
120 105 0.69
121 9 0.06
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAATAACTCACACAAAGGCCTTCAGGACTTAACCCGGATTTAATAACTCGCA
Found at i:67775677 original size:40 final size:41
Alignment explanation
Indices: 67775601--67775677 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
67775591 TTTGTATCTC
* *
67775601 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGTCCGGACACATTCACTTA
67775642 GCACAAA-GCCTTCGGGA-CTTAG-CCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGTCCGGACA-CATTCA
67775678 ATTATCATGC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
39 6 0.19
40 16 0.50
41 10 0.31
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGTCCGGACACATTCACTTA
Found at i:67780572 original size:27 final size:26
Alignment explanation
Indices: 67780535--67780638 Score: 75
Period size: 27 Copynumber: 3.7 Consensus size: 26
67780525 GGAATCAGAG
67780535 TTAA-CTGGGCCTTAGCCCATTCAATA
1 TTAATCTGGGCC-TAGCCCATTCAATA
*
67780561 TTAATCTGGGCCATAGCCCCTTACAATA
1 TTAATCTGGGCC-TAGCCCATT-CAATA
* *
67780589 TCAAATATACTGGGCCTAGCCCATATCAGTA
1 T--TA-AT-CTGGGCCTAGCCCAT-TCAATA
* *
67780620 TCAATCTGGGTCGTAGCCC
1 TTAATCTGGG-CCTAGCCC
67780639 TATTACAAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
26 4 0.06
27 20 0.32
28 15 0.24
29 1 0.02
30 1 0.02
31 14 0.22
32 8 0.13
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
TTAATCTGGGCCTAGCCCATTCAATA
Found at i:67780604 original size:59 final size:61
Alignment explanation
Indices: 67780538--67780674 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 61
67780528 ATCAGAGTTA
* *
67780538 ACTGGGCCTTAGCCCAT-TCAATATTAATCTGGGCCATAGCCC-CTTACAATATC-AAATAT
1 ACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAA-ATCGAAATAT
* * * * *
67780597 ACTGGGCC-TAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACAAGTCGAGATAT
1 ACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAATCGAAATAT
*
67780657 ATTGGGCCTT-GCCCATAT
1 ACTGGGCCTTAGCCCATAT
67780675 TAACACAGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
58 8 0.12
59 31 0.47
60 26 0.39
61 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (61 bp):
ACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAATCGAAATAT
Found at i:67784598 original size:45 final size:45
Alignment explanation
Indices: 67784516--67784735 Score: 307
Period size: 45 Copynumber: 4.9 Consensus size: 45
67784506 AAGAGGTGGA
** * * *
67784516 CAACATCATGCATATAATTTGTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGC--ATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
67784563 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
67784608 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA-TTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
67784652 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
67784697 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
67784736 CCATGACCGA
Statistics
Matches: 158, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
44 42 0.27
45 105 0.66
47 11 0.07
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:67784670 original size:89 final size:90
Alignment explanation
Indices: 67784516--67784735 Score: 352
Period size: 89 Copynumber: 2.4 Consensus size: 90
67784506 AAGAGGTGGA
* *
67784516 CAACATCATGCATATAATTTGTGGAACAAATTAAGGAAGCATTTGACCAACATCATGCATAATTC
1 CAACATCATGC--ATAATTTATGGAACAAATTGAGGAAGCATTTGACCAACATCATGCATAATTC
*
67784581 ATGGAAGAATTTGAGGAAGCATTTGGC
64 ATGGAAGAATTTAAGGAAGCATTTGGC
* * *
67784608 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA-TTGACCAACATCATGCATAATTCAT
1 CAACATCATGCATAATTTATGGAACAAATTGAGGAAGCATTTGACCAACATCATGCATAATTCAT
67784672 GGAAGAATTTAAGGAAGCATTTGGC
66 GGAAGAATTTAAGGAAGCATTTGGC
*
67784697 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTTATGGAACAAATTGAGGAAGCA
67784736 CCATGACCGA
Statistics
Matches: 118, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
89 84 0.71
90 23 0.19
92 11 0.09
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (90 bp):
CAACATCATGCATAATTTATGGAACAAATTGAGGAAGCATTTGACCAACATCATGCATAATTCAT
GGAAGAATTTAAGGAAGCATTTGGC
Found at i:67785500 original size:68 final size:68
Alignment explanation
Indices: 67785366--67785498 Score: 227
Period size: 66 Copynumber: 2.0 Consensus size: 68
67785356 AAATAATAAT
67785366 AAAAAAATAAAATTTTGCCTACGTCTAGGCGGGCGGACGAAAAGAACGTGAAAGATCCGTAAAAA
1 AAAAAAATAAAATTTTGCCTACGTCTAGGC-GGCGGACGAAAAGAACGTGAAAGATCCGTAAAAA
67785431 AATC
65 AATC
67785435 AAAAAAA-AAAA-TTTGCCTACGGTCTAGGC-GCGGACGAAAAGAACGTGAAAGATCCGTAAAAA
1 AAAAAAATAAAATTTTGCCTAC-GTCTAGGCGGCGGACGAAAAGAACGTGAAAGATCCGTAAAAA
67785497 AA
65 AA
67785499 AAGAGTCTGG
Statistics
Matches: 63, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
66 35 0.56
67 9 0.14
68 12 0.19
69 7 0.11
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.16
Consensus pattern (68 bp):
AAAAAAATAAAATTTTGCCTACGTCTAGGCGGCGGACGAAAAGAACGTGAAAGATCCGTAAAAAA
ATC
Found at i:67788572 original size:45 final size:45
Alignment explanation
Indices: 67788436--67788650 Score: 301
Period size: 44 Copynumber: 4.8 Consensus size: 45
67788426 AAGAGGTGGA
* *
67788436 CAACATCATGCATAATT-GTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAACAAATTGAGGAAGCATTTGAC
* *
67788480 CAACATCATGCATAATTCATGGAA-GAATTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAACAAATTGAGGAAGCATTTGAC
* *
67788524 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAACAAATTGAGGAAGCATTTGAC
* * *
67788569 CAACATCAATGCATAATTCATGGAA-AATTTAAGGAAGCATTTGGC
1 CAACATC-ATGCATAATTCATGGAACAAATTGAGGAAGCATTTGAC
* *
67788614 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAG
1 CAACATCATGCATAATTCATGGAACAAATTGAGGAAG
67788651 ACCATGGCCG
Statistics
Matches: 154, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
44 73 0.47
45 64 0.42
46 17 0.11
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAACAAATTGAGGAAGCATTTGAC
Found at i:67788609 original size:90 final size:88
Alignment explanation
Indices: 67788436--67788650 Score: 333
Period size: 90 Copynumber: 2.4 Consensus size: 88
67788426 AAGAGGTGGA
* *
67788436 CAACATCATGCATAATTGTGGAACAAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATG
1 CAACATCATGCATAATTATGGAACAAATTGAGGAAGCATTTGACCAACATCATGCATAATTCATG
*
67788501 GAAGAATTGAGGAAGCATTTGGC
66 GAAGAATTAAGGAAGCATTTGGC
* *
67788524 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGACCAACATCAATGCATAATTCA
1 CAACATCATGCATAATT-ATGGAACAAATTGAGGAAGCATTTGACCAACATC-ATGCATAATTCA
67788589 TGGAA-AATTTAAGGAAGCATTTGGC
64 TGGAAGAA-TTAAGGAAGCATTTGGC
*
67788614 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAG
1 CAACATCATGCATAA-TTATGGAACAAATTGAGGAAG
67788651 ACCATGGCCG
Statistics
Matches: 115, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
88 17 0.15
89 32 0.28
90 64 0.56
91 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (88 bp):
CAACATCATGCATAATTATGGAACAAATTGAGGAAGCATTTGACCAACATCATGCATAATTCATG
GAAGAATTAAGGAAGCATTTGGC
Found at i:67789284 original size:52 final size:52
Alignment explanation
Indices: 67789223--67789323 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
67789213 GAAGAAGAAA
* *
67789223 AACACACAAAATTTTACGTGGAAACCCTTTCGGGAAAAAACCACGGGTAAAG
1 AACACACAAAATTTTACGTGGAAACCCTTTCAGGAAAAAACCACAGGTAAAG
*
67789275 AACACACAAAATTTTATGTGGAAACCCTTTCAGGAAAAAACCACAGGTA
1 AACACACAAAATTTTACGTGGAAACCCTTTCAGGAAAAAACCACAGGTA
67789324 GAGGAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.19
Consensus pattern (52 bp):
AACACACAAAATTTTACGTGGAAACCCTTTCAGGAAAAAACCACAGGTAAAG
Found at i:67790500 original size:27 final size:27
Alignment explanation
Indices: 67790462--67790515 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
67790452 ATGTACATGG
*
67790462 ATTACTAAAAAATGATTGAAAGAATGA
1 ATTACTAAAAAATAATTGAAAGAATGA
67790489 ATTACTAAAAAATAATTGAAAGAATGA
1 ATTACTAAAAAATAATTGAAAGAATGA
67790516 GTTTATGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.57, C:0.04, G:0.13, T:0.26
Consensus pattern (27 bp):
ATTACTAAAAAATAATTGAAAGAATGA
Found at i:67792005 original size:19 final size:19
Alignment explanation
Indices: 67791983--67792023 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
67791973 AGGTTTTGGG
67791983 GATTACATGTGAAAATTAT
1 GATTACATGTGAAAATTAT
67792002 GATTACATGTGAAAATTAT
1 GATTACATGTGAAAATTAT
67792021 GAT
1 GAT
67792024 AGTCCCGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (19 bp):
GATTACATGTGAAAATTAT
Found at i:67792862 original size:147 final size:146
Alignment explanation
Indices: 67792676--67792962 Score: 425
Period size: 147 Copynumber: 2.0 Consensus size: 146
67792666 CATTTTTTTT
*
67792676 AAAAGAGAAAGTTTGATTTTTAAAATAAAATATGTTTTTTCAAGTCATATTAAAGGAAAA-TTTT
1 AAAAGAGAAAGTTTGATTTTTAAAATAAAATATGTTTTTT-AAGTCATATTAAAGGAAAAGTTTA
* *
67792740 AAATTTGAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAATATTTGATTTTTAAGAAA
65 AAATTTGAAAACAAAGTTTTGATATTTTTCAACTATTTCGAAATAAAGATTTGATTTTTAAGAAA
67792805 AATAGTGATTTAAAAAA
130 AATAGTGATTTAAAAAA
* * **
67792822 AAAAGAGATAGTTTAGATTTTTAAAATAAAAATATGTTTTTT-AGTCATTTTACTGGAAAAGTTT
1 AAAAGAGAAAGTTT-GATTTTTAAAAT-AAAATATGTTTTTTAAGTCATATTAAAGGAAAAGTTT
* * *
67792886 AAAATTTTAAAACAAAGTTTTGATATTTTTCAACTATTTTGAAATAAAGCTTTGATTTTTAAGAA
64 AAAATTTGAAAACAAAGTTTTGATATTTTTCAACTATTTCGAAATAAAGATTTGATTTTTAAGAA
* *
67792951 AAGTTGTGATTT
129 AAATAGTGATTT
67792963 TTTAAAAGAA
Statistics
Matches: 126, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
146 28 0.22
147 84 0.67
148 14 0.11
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.41
Consensus pattern (146 bp):
AAAAGAGAAAGTTTGATTTTTAAAATAAAATATGTTTTTTAAGTCATATTAAAGGAAAAGTTTAA
AATTTGAAAACAAAGTTTTGATATTTTTCAACTATTTCGAAATAAAGATTTGATTTTTAAGAAAA
ATAGTGATTTAAAAAA
Found at i:67792988 original size:17 final size:19
Alignment explanation
Indices: 67792931--67792991 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
67792921 ATTTTGAAAT
*
67792931 AAAGCTTTGATTTTTAAGA
1 AAAGTTTTGATTTTTAAGA
*
67792950 AAAGTTGTGATTTTTTAAAAGA
1 AAAGTTTTGA-TTTTT--AAGA
67792972 AAA-TTTTGA-TTTTAAGA
1 AAAGTTTTGATTTTTAAGA
67792989 AAA
1 AAA
67792992 AAAAATTTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
17 7 0.19
19 12 0.33
20 5 0.14
21 5 0.14
22 7 0.19
ACGTcount: A:0.43, C:0.02, G:0.15, T:0.41
Consensus pattern (19 bp):
AAAGTTTTGATTTTTAAGA
Found at i:67806628 original size:25 final size:25
Alignment explanation
Indices: 67806600--67806649 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
67806590 TCATATTACG
67806600 GGACTCAATAATGTTCCTGTCTCTT
1 GGACTCAATAATGTTCCTGTCTCTT
67806625 GGACTCAATAATGTTCCTGTCTCTT
1 GGACTCAATAATGTTCCTGTCTCTT
67806650 TCTCCTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (25 bp):
GGACTCAATAATGTTCCTGTCTCTT
Found at i:67808018 original size:46 final size:45
Alignment explanation
Indices: 67807968--67808143 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 45
67807958 TATTTGGGAA
* *
67807968 TCCGAGCTCATTGAGTTGAGTCCAAGTTCACTTATGGATACGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA-G
* ** * * * *
67808014 TCCGAGCTTGTTGAGTTGAGTCCGAGTT-TGTGAGATGTAATTAGGCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-TACGAAG
* *
67808061 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA-G
* * *
67808107 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67808144 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 61 0.60
47 29 0.29
48 2 0.02
49 4 0.04
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAG
Found at i:67814059 original size:27 final size:27
Alignment explanation
Indices: 67814021--67814281 Score: 215
Period size: 27 Copynumber: 9.7 Consensus size: 27
67814011 AGCTGTTTAG
*
67814021 ATTACCGAAATACCCCTTATTTGTAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
*
67814048 ATTACCAAAATACCCCT-ATTTTGTAAA
1 ATTACCGAAATACCCCTGA-TTTGTAAA
** **
67814075 ATTACCGAAATACCCCCAATTTGTGGA
1 ATTACCGAAATACCCCTGATTTGTAAA
*** *
67814102 ATTATTAAAATACCCCTGGTTTGTAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
** * *
67814129 ATTATTGAAATA-TCCTCGGTTTGTAAA
1 ATTACCGAAATACCCCT-GATTTGTAAA
* ** *
67814156 ATTACTGAAATACCCCCAATTTATAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
67814183 ATTACCGAAATA-CCCTGAGTTTGTAAA
1 ATTACCGAAATACCCCTGA-TTTGTAAA
* * *
67814210 ATTATCAAAATACCCCCGATTTGTAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
* ** *
67814237 ATTATCGAAATACCTTTG-TAGTGTAAA
1 ATTACCGAAATACCCCTGAT-TTGTAAA
* *
67814264 ATTATCGAAAAACCCCTG
1 ATTACCGAAATACCCCTG
67814282 TAGGGTAAAA
Statistics
Matches: 191, Mismatches: 36, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
26 9 0.05
27 174 0.91
28 8 0.04
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
ATTACCGAAATACCCCTGATTTGTAAA
Found at i:67814166 original size:81 final size:81
Alignment explanation
Indices: 67814021--67814250 Score: 252
Period size: 81 Copynumber: 2.8 Consensus size: 81
67814011 AGCTGTTTAG
* * * * *
67814021 ATTACCGAAATACCCCTTA-TTTGTAAAATTACCAAAATA-CCCCTATTTTGTAAAATTACCGAA
1 ATTACCAAAATA-CCCTGAGTTTGTAAAATTATCAAAATACCCCCGA-TTTGTAAAATTACTGAA
* **
67814084 ATACCCCCAATTTGTGGA
64 ATACCCCCAATTTATAAA
** ** * * *
67814102 ATTATTAAAATACCCCTG-GTTTGTAAAATTATTGAAATATCCTCGGTTTGTAAAATTACTGAAA
1 ATTACCAAAATA-CCCTGAGTTTGTAAAATTATCAAAATACCCCCGATTTGTAAAATTACTGAAA
67814166 TACCCCCAATTTATAAA
65 TACCCCCAATTTATAAA
*
67814183 ATTACCGAAATACCCTGAGTTTGTAAAATTATCAAAATACCCCCGATTTGTAAAATTA-TCGAAA
1 ATTACCAAAATACCCTGAGTTTGTAAAATTATCAAAATACCCCCGATTTGTAAAATTACT-GAAA
67814247 TACC
65 TACC
67814251 TTTGTAGTGT
Statistics
Matches: 123, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
80 6 0.05
81 114 0.93
82 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
ATTACCAAAATACCCTGAGTTTGTAAAATTATCAAAATACCCCCGATTTGTAAAATTACTGAAAT
ACCCCCAATTTATAAA
Found at i:67814672 original size:22 final size:22
Alignment explanation
Indices: 67814647--67814725 Score: 79
Period size: 22 Copynumber: 3.6 Consensus size: 22
67814637 TTAATCTGAT
*
67814647 TATGGCTTTGTGCCAATCTAAA
1 TATGGCTCTGTGCCAATCTAAA
* * * *
67814669 TATGGCTCTGTG-CTATGTTGAT
1 TATGGCTCTGTGCCAAT-CTAAA
* *
67814691 TATGGCTATGTGCCAACCTAAA
1 TATGGCTCTGTGCCAATCTAAA
67814713 TATGGCTCTGTGC
1 TATGGCTCTGTGC
67814726 TATGTTGATT
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
21 3 0.07
22 38 0.88
23 2 0.05
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.37
Consensus pattern (22 bp):
TATGGCTCTGTGCCAATCTAAA
Found at i:67814697 original size:44 final size:44
Alignment explanation
Indices: 67814643--67814752 Score: 193
Period size: 44 Copynumber: 2.5 Consensus size: 44
67814633 CTGCTTAATC
67814643 TGATTATGGCTTTGTGCCAATCTAAATATGGCTCTGTGCTATGT
1 TGATTATGGCTTTGTGCCAATCTAAATATGGCTCTGTGCTATGT
* *
67814687 TGATTATGGCTATGTGCCAACCTAAATATGGCTCTGTGCTATGT
1 TGATTATGGCTTTGTGCCAATCTAAATATGGCTCTGTGCTATGT
*
67814731 TGATTATGGCTTTGTGCAAATC
1 TGATTATGGCTTTGTGCCAATC
67814753 GTATTTACTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (44 bp):
TGATTATGGCTTTGTGCCAATCTAAATATGGCTCTGTGCTATGT
Found at i:67814738 original size:22 final size:22
Alignment explanation
Indices: 67814669--67814747 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 22
67814659 CCAATCTAAA
67814669 TATGGCTCTGTGCTATGTTGAT
1 TATGGCTCTGTGCTATGTTGAT
* * *** * *
67814691 TATGGCTATGTGCCAACCTAAA
1 TATGGCTCTGTGCTATGTTGAT
67814713 TATGGCTCTGTGCTATGTTGAT
1 TATGGCTCTGTGCTATGTTGAT
*
67814735 TATGGCTTTGTGC
1 TATGGCTCTGTGC
67814748 AAATCGTATT
Statistics
Matches: 42, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.41
Consensus pattern (22 bp):
TATGGCTCTGTGCTATGTTGAT
Found at i:67820761 original size:40 final size:40
Alignment explanation
Indices: 67820677--67820782 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 40
67820667 TACCAGCTCG
* * *
67820677 TAGCCTGCGGGTCTCT-AGCCCGGATAGCATTCTAGCACA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACA
* * *
67820716 AAGCCTGCGGGTCTTTAAGCCTGGATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACA
67820756 TAGCCTGCGGGTCTTTAAGCCCGGATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATA
67820783 CAATTCCTCA
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 14 0.24
40 44 0.76
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACA
Done.