Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 213 of 295
Found at i:67820789 original size:40 final size:40
Alignment explanation
Indices: 67820639--67820789 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
67820629 TTCTAGCACC
** * * * * *
67820639 AGCCTGCGGGAATTTAAACCCGG-TATAATACCAGCTCGT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACAT
* * *
67820678 AGCCTGCGGGTCTCT-AGCCCGGATAGC-ATTCTAGCACAA
1 AGCCTGCGGGTCTTTAAGCCCGGATA-CAATTCCAGCACAT
* *
67820717 AGCCTGCGGGTCTTTAAGCCTGGATA-ACATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCACAT
67820757 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
67820790 TCAAGTATCA
Statistics
Matches: 90, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
38 6 0.07
39 35 0.39
40 48 0.53
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACAT
Found at i:67826796 original size:40 final size:40
Alignment explanation
Indices: 67826737--67826877 Score: 205
Period size: 40 Copynumber: 3.5 Consensus size: 40
67826727 ACTCGTGGCC
* * * *
67826737 TGCGGGTCTCT-AGCCCGGATAGCATTCTAACACGA-AGCT
1 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCAC-ATAGCT
67826776 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACATAGCT
1 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACATAGCT
* *
67826816 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCATATAGCC
1 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACATAGCT
67826856 TGCGGGTCTTTAAGCCCGGATA
1 TGCGGGTCTTTAAGCCCGGATA
67826878 CAATTCCTCA
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 11 0.12
40 83 0.88
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACATAGCT
Found at i:67828961 original size:27 final size:27
Alignment explanation
Indices: 67828931--67828985 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
67828921 CATAATGTTC
* **
67828931 AATAGAACTAGAGATCGTAATTTCTTT
1 AATAGAACTAGAAATAATAATTTCTTT
*
67828958 AATAGAACTCGAAATAATAATTTCTTT
1 AATAGAACTAGAAATAATAATTTCTTT
67828985 A
1 A
67828986 TTCTCATCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (27 bp):
AATAGAACTAGAAATAATAATTTCTTT
Found at i:67829211 original size:42 final size:41
Alignment explanation
Indices: 67829164--67829316 Score: 108
Period size: 42 Copynumber: 3.6 Consensus size: 41
67829154 TTAGATGCCA
* **
67829164 ATGCCATGTACCAGACATGGTCTTACATGGGATCTCACATCG
1 ATGCCATGT-CCAGACATGGTCTTACACGAAATCTCACATCG
* * * * * *
67829206 ATGCCATATCCCATATATGGTCTTATACGAAATCTCACTTTG
1 ATGCCATGT-CCAGACATGGTCTTACACGAAATCTCACATCG
* * * * *
67829248 ATGTCATGTCCTAGACATGGTCTTATACTAAATCTCATATCA
1 ATGCCATGTCC-AGACATGGTCTTACACGAAATCTCACATCG
* * * *
67829290 ACGCCATATCCCAGATATTGTCTTACA
1 ATGCCATGT-CCAGACATGGTCTTACA
67829317 TGATCACATA
Statistics
Matches: 84, Mismatches: 25, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
41 2 0.02
42 80 0.95
43 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (41 bp):
ATGCCATGTCCAGACATGGTCTTACACGAAATCTCACATCG
Found at i:67830728 original size:38 final size:38
Alignment explanation
Indices: 67830663--67830782 Score: 127
Period size: 38 Copynumber: 3.1 Consensus size: 38
67830653 ACGAAGCTTA
* * *
67830663 CGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTG
1 CGGGA-TTT-AACCCAGATATATTACCAGCACTAAGCCTG
*
67830703 CGGGATTTAACCCAGATATATTACCAGCACGAAGCCTG
1 CGGGATTTAACCCAGATATATTACCAGCACTAAGCCTG
* **
67830741 CGGAATTTAACCTGGATATAATT-CCAGCA-TATAGCCTG
1 CGGGATTTAACCCAGATAT-ATTACCAGCACTA-AGCCTG
67830779 CGGG
1 CGGG
67830783 TCTTTAAGCC
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
37 1 0.01
38 57 0.83
39 6 0.09
40 5 0.07
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (38 bp):
CGGGATTTAACCCAGATATATTACCAGCACTAAGCCTG
Found at i:67835412 original size:45 final size:44
Alignment explanation
Indices: 67835328--67835412 Score: 107
Period size: 45 Copynumber: 1.9 Consensus size: 44
67835318 ATGTAATCTG
* *
67835328 AACTCATTGAGTTATGTCTGAGTTCATGATATATGTGACATCCA
1 AACTCATTAAGTTATGTCTGAGTTCATGATATATATGACATCCA
* * * *
67835372 AACTCATTAAGTTGTGGTCTGTGTTCGTGATATGTATGACA
1 AACTCATTAAGTTAT-GTCTGAGTTCATGATATATATGACA
67835413 CATGTTTTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 13 0.38
45 21 0.62
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (44 bp):
AACTCATTAAGTTATGTCTGAGTTCATGATATATATGACATCCA
Found at i:67836957 original size:29 final size:31
Alignment explanation
Indices: 67836884--67836960 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
67836874 GTGTCCCAAG
* * *
67836884 CCACACTGGCGTGTGTGACCATACGACCTAC
1 CCACACGGGCGTGTGTGACAACACGACCTAC
*
67836915 CCACACGGGCGTGTGTGACAACACGGCCTAC
1 CCACACGGGCGTGTGTGACAACACGACCTAC
*
67836946 CCACACGGGTGTGTG
1 CCACACGGGCGTGTG
67836961 ACTTTCTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.21, C:0.34, G:0.29, T:0.17
Consensus pattern (31 bp):
CCACACGGGCGTGTGTGACAACACGACCTAC
Found at i:67837280 original size:10 final size:9
Alignment explanation
Indices: 67837256--67837281 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
67837246 TTCAAGGATC
67837256 TCAAAAACA
1 TCAAAAACA
67837265 TCAAAAACA
1 TCAAAAACA
67837274 TCAAAAAC
1 TCAAAAAC
67837282 TAACATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAACA
Found at i:67840343 original size:49 final size:49
Alignment explanation
Indices: 67840286--67840519 Score: 306
Period size: 49 Copynumber: 4.7 Consensus size: 49
67840276 ACCTGGCACG
*
67840286 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
* ** * *
67840335 CATAGTAGCCTGCACTTAGTACTACACACGAGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACA
* * * * *
67840385 CGTAATAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACA
*** *
67840436 CATAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
67840485 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
67840520 TCACAATAGA
Statistics
Matches: 155, Mismatches: 27, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
49 74 0.48
50 45 0.29
51 36 0.23
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
Found at i:67842987 original size:21 final size:20
Alignment explanation
Indices: 67842963--67843001 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
67842953 AAAACCCTTT
67842963 TTAAAATAAAATAAACCTTAA
1 TTAAAATAAAA-AAACCTTAA
**
67842984 TTAACTTAAAAAAACCTT
1 TTAAAATAAAAAAACCTT
67843002 TCAATTAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (20 bp):
TTAAAATAAAAAAACCTTAA
Found at i:67844100 original size:29 final size:28
Alignment explanation
Indices: 67844043--67844128 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 28
67844033 TACCTGTATC
*
67844043 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
* *
67844071 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCC-AATCACATTCATA
* ** *
67844100 TCGCCTGTTAAGCCCAGTCACATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
67844128 T
1 T
67844129 TCATGCTCAC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
28 26 0.54
29 22 0.46
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAAGCCCAATCACATTCATA
Found at i:67844369 original size:15 final size:15
Alignment explanation
Indices: 67844337--67844370 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
67844327 CATAGCCAAA
*
67844337 CTTTCGGCATTTCGG
1 CTTTCGGCATTTCAG
*
67844352 CTTTCGGCATTTTAG
1 CTTTCGGCATTTCAG
67844367 CTTT
1 CTTT
67844371 TGCCGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (15 bp):
CTTTCGGCATTTCAG
Found at i:67851282 original size:28 final size:28
Alignment explanation
Indices: 67851251--67851324 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
67851241 ATGAATATAT
*
67851251 GCACTATGTGTGCGAGATTAGTAATCGA
1 GCACTATGTGTGCGAGATTAGTAACCGA
* *
67851279 GCACTATGTGTGCGAAATTATTAACCGA
1 GCACTATGTGTGCGAGATTAGTAACCGA
67851307 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
67851325 CGGGTGTAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATTAGTAACCGA
Found at i:67858983 original size:28 final size:28
Alignment explanation
Indices: 67858952--67859025 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
67858942 ATGAATATAT
*
67858952 GCACTATGTGTGCGAGATTAGTAATCGA
1 GCACTATGTGTGCGAGATTAGTAACCGA
* *
67858980 GCACTATGTGTGCGAAATTATTAACCGA
1 GCACTATGTGTGCGAGATTAGTAACCGA
67859008 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
67859026 CGGGTGTAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATTAGTAACCGA
Found at i:67862739 original size:39 final size:39
Alignment explanation
Indices: 67862622--67862883 Score: 311
Period size: 39 Copynumber: 6.6 Consensus size: 39
67862612 GCTCCTCGTT
* * *
67862622 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TTGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
67862662 CAAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
67862702 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
67862741 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
67862780 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
67862819 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
67862860 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
67862884 CATCATTCAA
Statistics
Matches: 201, Mismatches: 14, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
39 132 0.66
40 58 0.29
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:67865023 original size:43 final size:43
Alignment explanation
Indices: 67864962--67865138 Score: 232
Period size: 43 Copynumber: 4.1 Consensus size: 43
67864952 ATATTCTACA
* * *
67864962 ATGCCAACATCCCAGACGTGATCTTACATGTAATCACATATCG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAATCACATATCG
* * * *
67865005 ATGCCAACGTCCTAGACGTGGTCATACACATAATTACATAAT-G
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAATCACAT-ATCG
* *
67865048 ATGCCAACATCC-CGACGTGGTCTTACACGTAATCACATACCG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAATCACATATCG
* *
67865090 ATGCCAACATTCTAGACGTGGTCTTACACGTAATTACATATCG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAATCACATATCG
67865133 ATGCCA
1 ATGCCA
67865139 CATATACATC
Statistics
Matches: 114, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
41 1 0.01
42 34 0.30
43 77 0.68
44 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACATCCTAGACGTGGTCTTACACGTAATCACATATCG
Found at i:67865106 original size:85 final size:86
Alignment explanation
Indices: 67864962--67865138 Score: 268
Period size: 85 Copynumber: 2.1 Consensus size: 86
67864952 ATATTCTACA
* * *
67864962 ATGCCAACATCCCAGACGTGATCTTACATGTAATCACATATCGATGCCAACGTCCTAGACGTGGT
1 ATGCCAACATCCCAGACGTGATCTTACACGTAATCACATACCGATGCCAACATCCTAGACGTGGT
67865027 CATACACATAATTACATAAT-G
66 CATACACATAATTACAT-ATCG
* *
67865048 ATGCCAACATCCC-GACGTGGTCTTACACGTAATCACATACCGATGCCAACATTCTAGACGTGGT
1 ATGCCAACATCCCAGACGTGATCTTACACGTAATCACATACCGATGCCAACATCCTAGACGTGGT
* *
67865112 CTTACACGTAATTACATATCG
66 CATACACATAATTACATATCG
67865133 ATGCCA
1 ATGCCA
67865139 CATATACATC
Statistics
Matches: 83, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
84 2 0.02
85 68 0.82
86 13 0.16
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (86 bp):
ATGCCAACATCCCAGACGTGATCTTACACGTAATCACATACCGATGCCAACATCCTAGACGTGGT
CATACACATAATTACATATCG
Found at i:67866685 original size:13 final size:13
Alignment explanation
Indices: 67866667--67866693 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67866657 GGAGTAATTG
67866667 CACACGGGCGTGT
1 CACACGGGCGTGT
67866680 CACACGGGCGTGT
1 CACACGGGCGTGT
67866693 C
1 C
67866694 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:67880347 original size:45 final size:44
Alignment explanation
Indices: 67880263--67880347 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
67880253 ATGTAATCTG
* *
67880263 AACTCATTGAGTTGTGTCTGAGTTCATGATATATGTGACATCCT
1 AACTCATTAAGTTGTGTCTGAGTTCATGATATATATGACATCCT
* *
67880307 AACTCATTAAGTTGTGGTCTGAGTTCGTGATATGTATGACA
1 AACTCATTAAGTTGT-GTCTGAGTTCATGATATATATGACA
67880348 CATGTTTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 14 0.39
45 22 0.61
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (44 bp):
AACTCATTAAGTTGTGTCTGAGTTCATGATATATATGACATCCT
Found at i:67881158 original size:10 final size:10
Alignment explanation
Indices: 67881143--67881173 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
67881133 TTTAATGTGG
67881143 TTATGGTTGA
1 TTATGGTTGA
67881153 TTATGGTTGA
1 TTATGGTTGA
67881163 TTATGGTTGA
1 TTATGGTTGA
67881173 T
1 T
67881174 GAGTGAGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (10 bp):
TTATGGTTGA
Found at i:67882173 original size:10 final size:9
Alignment explanation
Indices: 67882149--67882174 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
67882139 TTCAAGGATC
67882149 TCAAAAACA
1 TCAAAAACA
67882158 TCAAAAACA
1 TCAAAAACA
67882167 TCAAAAAC
1 TCAAAAAC
67882175 TAACATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAACA
Found at i:67885386 original size:100 final size:101
Alignment explanation
Indices: 67885202--67885391 Score: 292
Period size: 100 Copynumber: 1.9 Consensus size: 101
67885192 TAGCCAAAGC
* * * *
67885202 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACAAGACATAACCATCTGATACACGTA
1 TATCGGGTACGCATAGTAGCCTACACTTAGTACTACACACAAGACACAACAATCTGATACACGTA
67885267 GTAGCCTACACTTAGTACTACACACGTGATCGAAGT
66 GTAGCCTACACTTAGTACTACACACGTGATCGAAGT
*** * *
67885303 TATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGAC-CAATAATCTGGTACACGTA
1 TATCGGGTACGCATAGTAGCCTACACTTAGTACTACACACAAGACACAACAATCTGATACACGTA
67885367 GTAGCCTACACTTAGTACTACACAC
66 GTAGCCTACACTTAGTACTACACAC
67885392 ATGACCTCAC
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 40 0.50
101 40 0.50
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
TATCGGGTACGCATAGTAGCCTACACTTAGTACTACACACAAGACACAACAATCTGATACACGTA
GTAGCCTACACTTAGTACTACACACGTGATCGAAGT
Found at i:67890144 original size:40 final size:39
Alignment explanation
Indices: 67890107--67890362 Score: 250
Period size: 40 Copynumber: 6.4 Consensus size: 39
67890097 ATATCCGGAC
*
67890107 TAAGATCCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGATATCAAA-TCCGGGT
* * * *
67890147 TAAGCCCCGAAGGCCTTTGTGTGAGATA-CTAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGATATC-AAATCCGGGT
* *
67890187 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGATATCAAATCCGGGT
* *
67890227 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGATATCAAATCCGGGT
* *
67890267 TAAGTCCTGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCC-GAAGGCATTCGTGCGAGATATCAAATCCGGGT
* * * *
67890307 TAAGTCCCGAAGGCATT-GTGTGAGTTA-CTAAAACCGGGC
1 TAAGT-CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGT
*
67890346 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
67890363 TGAACGAGGA
Statistics
Matches: 195, Mismatches: 15, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
39 35 0.18
40 155 0.79
41 5 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGATATCAAATCCGGGT
Found at i:67890197 original size:80 final size:80
Alignment explanation
Indices: 67890060--67890362 Score: 362
Period size: 80 Copynumber: 3.8 Consensus size: 80
67890050 TTGAATGCTG
* * * * * **
67890060 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
67890123 TTGTGCGAGATA-CAAA
64 TCGTGCGAGTTATTAAA
* *
67890139 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGTGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCCTTTGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
67890204 CGTGCGAGTTATTAAA
65 CGTGCGAGTTATTAAA
* * * * *
67890220 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCTGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
67890285 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
* * * *
67890300 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
67890363 TGAACGAGGA
Statistics
Matches: 192, Mismatches: 28, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
79 35 0.18
80 147 0.77
81 10 0.05
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATTAAA
Found at i:67890279 original size:120 final size:119
Alignment explanation
Indices: 67890060--67890362 Score: 358
Period size: 120 Copynumber: 2.5 Consensus size: 119
67890050 TTGAATGCTG
* * * * * *
67890060 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
* * * *
67890124 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGTGAGATACTAAA
64 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* *
67890180 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* * * * * *
67890245 GTGCGAGTTATTAAA-TCCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTATTAAA
65 GTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* * * *
67890300 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATT
67890363 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
119 35 0.22
120 115 0.73
121 7 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:67899124 original size:27 final size:27
Alignment explanation
Indices: 67899094--67899271 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
67899084 ATATTGAGCC
* * *
67899094 CGCACACTCAGTGCTATATATTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * * *
67899121 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
67899148 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
** * *
67899176 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
67899203 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
67899230 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
67899257 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67899272 GTACAATTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.80
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:67899233 original size:82 final size:81
Alignment explanation
Indices: 67899115--67899270 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
67899105 TGCTATATAT
* * *
67899115 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
67899180 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
67899197 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
67899261 CACTTAGTGC
65 CACTTAGTGC
67899271 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67901584 original size:39 final size:39
Alignment explanation
Indices: 67901380--67901602 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
67901370 TTGAATGCTG
* * * * *
67901380 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
67901420 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
67901459 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* * *
67901500 TCCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
67901540 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
67901579 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67901603 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 40 0.26
40 101 0.65
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:67907745 original size:33 final size:33
Alignment explanation
Indices: 67907679--67907782 Score: 94
Period size: 33 Copynumber: 3.3 Consensus size: 33
67907669 ACAGTGCATG
* * *
67907679 CAGTAACAGTCTAGGCCTGAGCCCTACT-CAGTAA
1 CAGT-ACAGTCTGGGCCTAAGCCCTA-TATAGTAA
*
67907713 CAGTACAGTCTGGGCCTTAGCCCTATATAGTAA
1 CAGTACAGTCTGGGCCTAAGCCCTATATAGTAA
* *
67907746 CAGT---G--TGGGCCTAAGCCCAAAATAGTAA
1 CAGTACAGTCTGGGCCTAAGCCCTATATAGTAA
67907774 CAGTACAGT
1 CAGTACAGT
67907783 GTATGAGCAA
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
28 24 0.41
30 1 0.02
31 1 0.02
32 1 0.02
33 28 0.47
34 4 0.07
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (33 bp):
CAGTACAGTCTGGGCCTAAGCCCTATATAGTAA
Found at i:67907754 original size:28 final size:28
Alignment explanation
Indices: 67907717--67907777 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
67907707 CAGTAACAGT
* * *
67907717 ACAGTCTGGGCCTTAGCCCTATATAGTA
1 ACAGTCTGGGCCTAAGCCCAAAATAGTA
*
67907745 ACAGTGTGGGCCTAAGCCCAAAATAGTA
1 ACAGTCTGGGCCTAAGCCCAAAATAGTA
67907773 ACAGT
1 ACAGT
67907778 ACAGTGTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAAAATAGTA
Found at i:67907981 original size:27 final size:25
Alignment explanation
Indices: 67907945--67908020 Score: 89
Period size: 27 Copynumber: 2.9 Consensus size: 25
67907935 ACAATAAATG
*
67907945 TGACAAAGCCACCAGTATCAGTAATTA
1 TGACATAGCCACCAGTA-CAGTAA-TA
*
67907972 TGGCATAGCCACCAGTAACAGTGAATA
1 TGACATAGCCACCAGT-ACAGT-AATA
*
67907999 TGACATAGTCACCAGTACAGTA
1 TGACATAGCCACCAGTACAGTA
67908021 CTTCATATCA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 1 0.02
26 5 0.12
27 34 0.79
28 3 0.07
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.21
Consensus pattern (25 bp):
TGACATAGCCACCAGTACAGTAATA
Found at i:67908184 original size:27 final size:27
Alignment explanation
Indices: 67908154--67908350 Score: 150
Period size: 27 Copynumber: 7.4 Consensus size: 27
67908144 AGGGCTACTC
* **
67908154 GTCATTTTGCCATACAGGGGTATTATA
1 GTCATTTTACCATACAGGGGTATTACG
* *
67908181 GTCATTTTACCCA-ATAGGGGCATTACG
1 GTCATTTTA-CCATACAGGGGTATTACG
67908208 GTCATTTTAACC-TACAGGGGTATTACG
1 GTCATTTT-ACCATACAGGGGTATTACG
* * *
67908235 GCCATTTTACCCTACAGGGGTGTTACG
1 GTCATTTTACCATACAGGGGTATTACG
* * *
67908262 GT-TTTTTACCCTACA-GGGTATTATG
1 GTCATTTTACCATACAGGGGTATTACG
* * * * **
67908287 GTCATTTTACCTTATAAGGGTATCAAA
1 GTCATTTTACCATACAGGGGTATTACG
* * *
67908314 GTTATTTTACCCTAGAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
67908341 ATTATTTTAC
1 GTCATTTTAC
67908351 AGTTATTTTG
Statistics
Matches: 137, Mismatches: 27, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
25 10 0.07
26 25 0.18
27 98 0.72
28 4 0.03
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:67908241 original size:54 final size:53
Alignment explanation
Indices: 67908166--67908297 Score: 167
Period size: 54 Copynumber: 2.5 Consensus size: 53
67908156 CATTTTGCCA
* *
67908166 TACAGGGGTATTATAGTCATTTTACCCAATAGGGGCATTACGGTCATTTTAACC
1 TACAGGGGTATTATGGTCATTTTACCCAACAGGGGCATTACGGT-ATTTTAACC
* * * ** * *
67908220 TACAGGGGTATTACGGCCATTTTACCCTACAGGGGTGTTACGGTTTTTTACCC
1 TACAGGGGTATTATGGTCATTTTACCCAACAGGGGCATTACGGTATTTTAACC
67908273 TACA-GGGTATTATGGTCATTTTACC
1 TACAGGGGTATTATGGTCATTTTACC
67908298 TTATAAGGGT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
52 19 0.28
53 11 0.16
54 37 0.55
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (53 bp):
TACAGGGGTATTATGGTCATTTTACCCAACAGGGGCATTACGGTATTTTAACC
Found at i:67908308 original size:79 final size:80
Alignment explanation
Indices: 67908156--67908350 Score: 180
Period size: 79 Copynumber: 2.4 Consensus size: 80
67908146 GGCTACTCGT
* * * * * * *
67908156 CATTTTGCCATACAGGGGTATTA-TAGTCATTTTACCCAATAGGGGCATTACGGTCATTTTAACC
1 CATTTTACCCTACAGGGGTATTACGA-TTATTTTACCCTACA-GGGTATTACGGTCATTTTAACC
* * **
67908220 TACAGGGGTATTACGGC
64 TACAAGGGTATCAAAGC
* * *
67908237 CATTTTACCCTACAGGGGTGTTACGGTT-TTTTACCCTACAGGGTATTATGGTCATTTT-ACCTT
1 CATTTTACCCTACAGGGGTATTACGATTATTTTACCCTACAGGGTATTACGGTCATTTTAACC-T
* *
67908300 ATAAGGGTATCAAAGT
65 ACAAGGGTATCAAAGC
* *
67908316 TATTTTACCCTAGAGGGGTATTACGATTATTTTAC
1 CATTTTACCCTACAGGGGTATTACGATTATTTTAC
67908351 AGTTATTTTG
Statistics
Matches: 91, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
78 3 0.03
79 51 0.56
80 16 0.18
81 21 0.23
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (80 bp):
CATTTTACCCTACAGGGGTATTACGATTATTTTACCCTACAGGGTATTACGGTCATTTTAACCTA
CAAGGGTATCAAAGC
Found at i:67921357 original size:1 final size:1
Alignment explanation
Indices: 67921260--67921345 Score: 109
Period size: 1 Copynumber: 86.0 Consensus size: 1
67921250 CTTATATATC
** ** * **
67921260 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGATTAGAAAATTAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
67921325 AAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAA
67921346 TTAATATAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 76 1.00
ACGTcount: A:0.92, C:0.00, G:0.02, T:0.06
Consensus pattern (1 bp):
A
Found at i:67921358 original size:50 final size:50
Alignment explanation
Indices: 67921260--67921358 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
67921250 CTTATATATC
*
67921260 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGATTAGAAAATT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATTAGAAAATT
*
67921310 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATATA-AAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAT-TAGAAAAT
67921359 ATCAAAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
50 44 0.96
51 2 0.04
ACGTcount: A:0.88, C:0.00, G:0.02, T:0.10
Consensus pattern (50 bp):
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATTAGAAAATT
Found at i:67923862 original size:41 final size:41
Alignment explanation
Indices: 67923817--67923932 Score: 196
Period size: 41 Copynumber: 2.8 Consensus size: 41
67923807 TCATTTGTTG
* * *
67923817 TCCTTTTTGGATAACATCCTTTCCAACCTTTTCATTTAATA
1 TCCTTTCTGGATAACATCCTTTTCAACCTTTTCATTCAATA
67923858 TCCTTTCTGGATAACATCCTTTTCAACCTTTTCATTCAATA
1 TCCTTTCTGGATAACATCCTTTTCAACCTTTTCATTCAATA
*
67923899 TCCTTTCTGGATAACATCCTTTTCACCCTTTTCA
1 TCCTTTCTGGATAACATCCTTTTCAACCTTTTCA
67923933 CTGATTCGGG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.22, C:0.28, G:0.05, T:0.45
Consensus pattern (41 bp):
TCCTTTCTGGATAACATCCTTTTCAACCTTTTCATTCAATA
Found at i:67927952 original size:33 final size:33
Alignment explanation
Indices: 67927887--67927952 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
67927877 TAAGGTATTG
* * *
67927887 TTATATTAAATTATTTGAATATTTCATGTATCA
1 TTATATTAAATTATTTAAATATATCATATATCA
67927920 TTATATTAAATTATTTAAATATAAT-ATATATCA
1 TTATATTAAATTATTTAAATAT-ATCATATATCA
67927953 ATAAATTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (33 bp):
TTATATTAAATTATTTAAATATATCATATATCA
Found at i:67928484 original size:31 final size:31
Alignment explanation
Indices: 67928446--67928507 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
67928436 CTCCTTCACA
*
67928446 CTTTCTCTGCAAACGCGTTCAAAGTTGCTTC
1 CTTTCTCTGCAAACGCATTCAAAGTTGCTTC
* *
67928477 CTTTCTCTGTAAATGCATTCAAAGTTGCTTC
1 CTTTCTCTGCAAACGCATTCAAAGTTGCTTC
67928508 TTTTATCACA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.39
Consensus pattern (31 bp):
CTTTCTCTGCAAACGCATTCAAAGTTGCTTC
Found at i:67937833 original size:43 final size:42
Alignment explanation
Indices: 67937697--67937834 Score: 129
Period size: 43 Copynumber: 3.2 Consensus size: 42
67937687 TGAGATATAG
*
67937697 TGTAAGACCATGTCTGGGACACAA-GCCTCG-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACA-AAGGCATCGTATTGA-A-TTACA
* * * ** *
67937740 TATAAGGCCGTGTCTGGGACATCGGCATCGTATCTG-ATTTCA
1 TGTAAGACCATGTCTGGGACAAAGGCATCGTAT-TGAATTACA
* *
67937782 TGTAAGACCCTGTCTGGGACAAAGGTATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACAAAGGCATCG-TATTGAATTACA
67937825 TGTAAGACCA
1 TGTAAGACCA
67937835 CGTCCGAGAC
Statistics
Matches: 75, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
42 30 0.40
43 41 0.55
44 2 0.03
45 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAAAGGCATCGTATTGAATTACA
Found at i:67943586 original size:11 final size:11
Alignment explanation
Indices: 67943570--67943595 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67943560 AAAATTGAAG
67943570 TTAAAAAACTT
1 TTAAAAAACTT
67943581 TTAAAAAACTT
1 TTAAAAAACTT
67943592 TTAA
1 TTAA
67943596 TTAATGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (11 bp):
TTAAAAAACTT
Found at i:67949722 original size:20 final size:20
Alignment explanation
Indices: 67949694--67949733 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
67949684 CTGTAATTAA
*
67949694 AATCTCTAAAAATCAGCTAT
1 AATCCCTAAAAATCAGCTAT
* *
67949714 AATCCCTAAAGATTAGCTAT
1 AATCCCTAAAAATCAGCTAT
67949734 TCAATGCTGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.30
Consensus pattern (20 bp):
AATCCCTAAAAATCAGCTAT
Found at i:67957967 original size:7 final size:8
Alignment explanation
Indices: 67957940--67957968 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
67957930 AAAAGGAAAT
67957940 TTTTTGTA
1 TTTTTGTA
67957948 TTTTTGTA
1 TTTTTGTA
67957956 TTTTT-TA
1 TTTTTGTA
67957963 TTTTTG
1 TTTTTG
67957969 GCTATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.79
Consensus pattern (8 bp):
TTTTTGTA
Found at i:67958841 original size:20 final size:19
Alignment explanation
Indices: 67958798--67958844 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
67958788 TGTTCGTATA
* *
67958798 TATTT-AAACCTTTTTATT
1 TATTTAAAACCATTTTAGT
67958816 TATTTAAAACCATTTTAGT
1 TATTTAAAACCATTTTAGT
*
67958835 TATTTTAAAC
1 TATTTAAAAC
67958845 TTTGTATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.53
Consensus pattern (19 bp):
TATTTAAAACCATTTTAGT
Found at i:67958920 original size:15 final size:15
Alignment explanation
Indices: 67958883--67958923 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
67958873 TTTTGAATAG
67958883 TTTTATATACAT-TT
1 TTTTATATACATATT
*
67958897 TGTT-T-TACATATT
1 TTTTATATACATATT
67958910 TTTTATATACATAT
1 TTTTATATACATAT
67958924 ATATTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 5 0.23
13 6 0.27
14 4 0.18
15 7 0.32
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (15 bp):
TTTTATATACATATT
Found at i:67959153 original size:32 final size:32
Alignment explanation
Indices: 67959096--67959167 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
67959086 TTTTATGTAT
67959096 TATATTTTAAACTATTTATATTTTATTTTAAA
1 TATATTTTAAACTATTTATATTTTATTTTAAA
*
67959128 TATATTCTTAAAC--TTTATTTATTTATTTTAAA
1 TATATT-TTAAACTATTTATAT-TTTATTTTAAA
*
67959160 -ATCTTTTA
1 TATATTTTA
67959168 TTTATTACTC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
30 3 0.08
31 10 0.28
32 17 0.47
33 6 0.17
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.60
Consensus pattern (32 bp):
TATATTTTAAACTATTTATATTTTATTTTAAA
Found at i:67960134 original size:132 final size:131
Alignment explanation
Indices: 67959949--67960415 Score: 381
Period size: 132 Copynumber: 3.5 Consensus size: 131
67959939 CACGGAATAG
* * * * *
67959949 TGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATTCCTTCAAAATTT
1 TGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGCTCAAAACAATCGAATATTCCTTCAAAATTT
* ** *
67960014 CACTCATGCCTTTTAAAAAATTCTTTAAAACGAAAGCAATATTCGGCGTTTGACAATTCGGGAAT
66 CACTCATGCCTTTTAAAAAATTCTTTAAAACGAAAG-AATGTTCGATGTTTGGCAATTCGGGAAT
67960079 CA
130 CA
** * ***
67960081 TGCCCTATCGTGCTGGGTTGTGATTTCTCATTTGCTCAAAACAATCGAATATTCCTTTAGGTTTT
1 TGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGCTCAAAACAATCGAATATTCCTTCAAAATTT
* * * * * * * *
67960146 CACTCATG-TTTATTAAAAACTT-TTCAAAAC-AAAGGATGTTCGATGCTTGGCGATTTGAGAAT
66 CACTCATGCCTT-TTAAAAAATTCTTTAAAACGAAAGAATGTTCGATGTTTGGCAATTCGGGAAT
*
67960208 CG
130 CA
* ** * * * * * *
67960210 TGCCTTATCGTGCTGGGTTGCGCTTTTTTTTTCATTTGGTCTAAACAATCGAAGATCCCTTCGAA
1 TGCCCTATCGTGCTGGGTT--GC--AATTTCTCATTTGCTCAAAACAATCGAATATTCCTTCAAA
* * * * *
67960275 ATTTCATTCA--CGTTTTCTAAAAGTCCTTTAAAACGAAAGAAGTGTTCGATGTTTGGCAATTCG
62 ATTTCACTCATGCCTTTT-AAAAAATTCTTTAAAACGAAAGAA-TGTTCGATGTTTGGCAATTC-
67960338 GGGAAT-A
124 GGGAATCA
* * * * * * *
67960345 GTACCCTATCGTGCTGGGTAGCAATTTCCCGTTTGGTCAAAATAATCGAATA-TCTCTTCGAAAT
1 -TGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGCTCAAAACAATCGAATATTC-CTTCAAAAT
67960409 TTCACTC
64 TTCACTC
67960416 GTATTTTATA
Statistics
Matches: 259, Mismatches: 63, Indels: 26
0.74 0.18 0.07
Matches are distributed among these distances:
129 38 0.15
130 4 0.02
131 13 0.05
132 115 0.44
133 44 0.17
134 7 0.03
135 17 0.07
136 21 0.08
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (131 bp):
TGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGCTCAAAACAATCGAATATTCCTTCAAAATTT
CACTCATGCCTTTTAAAAAATTCTTTAAAACGAAAGAATGTTCGATGTTTGGCAATTCGGGAATC
A
Found at i:67962288 original size:587 final size:587
Alignment explanation
Indices: 67961166--67962342 Score: 2095
Period size: 587 Copynumber: 2.0 Consensus size: 587
67961156 ATGGGCTAGT
* *
67961166 GGATTACTTTCGGGATACATCCGTACCTATGATTTCGTGAGATTTTCATCTCTGCATGGTCATAG
1 GGATTACTTCCGGGATACATCCGTACCTATGATTTCGTGAGATTTTCATCTCCGCATGGTCATAG
* *
67961231 CGAAATGTATTCCCCTGAATTGAACTCGATCCGTATGAGCCTATAAAGGGTGAGGATCGAGGAAT
66 CGAAATGTATTCCCATGAACTGAACTCGATCCGTATGAGCCTATAAAGGGTGAGGATCGAGGAAT
*
67961296 CTGCTGGTTCAGGTACCCTTACTCTAGAACCGAGCCACATATAGAGAAACCTAGGAGGTTACCCT
131 CTGCTGCTTCAGGTACCCTTACTCTAGAACCGAGCCACATATAGAGAAACCTAGGAGGTTACCCT
* * *
67961361 AGGTAGAGCCACTCCGAACCCTTAGTGATCACCCGATTAGGTACTTTGTTGGTTATTTATTTCTG
196 AGATAGAGCCACTCCGAACCCCTAGTGATCACCCGATTAGGTACTTTGTTGGTTATTTATTTCTA
67961426 TACAAACGTGTTTTGTTTTTTGTTTGTTCATGAATGCATTGCATTACATCATCATAGAAAGGAGG
261 TACAAACGTGTTTTGTTTTTTGTTTGTTCATGAATGCATTGCATTACATCATCATAGAAAGGAGG
*
67961491 TGTTGATTCATACTCGATTGCTAAATAGAACAGTTTGTCATAAGAAAACGAATTTCTTAATAACG
326 TGTTGATTCATACTCGATTGCTAAATAGAACAGTTTGTCATAAGAAAACAAATTTCTTAATAACG
67961556 CGGATTACAATACGGTTGTCCGAATTTGGTCCAAGTGAACACGACAGAAGAAGGCTAACAGTTCT
391 CGGATTACAATACGGTTGTCCGAATTTGGTCCAAGTGAACACGACAGAAGAAGGCTAACAGTTCT
67961621 TGGAGGAAAACCAAACTTTACCTAAGGATTCAAGCTGATAAAGATTATCCAAAAGCCGTCGCGTC
456 TGGAGGAAAACCAAACTTTACCTAAGGATTCAAGCTGATAAAGATTATCCAAAAGCCGTCGCGTC
67961686 CCAACTTTCTTAAAGGAGCTAATCAACATTGCGAGGATAGTAATTCGTGGCCTAGATCAAGCAAA
521 CCAACTTTCTTAAAGGAGCTAATCAACATTGCGAGGATAGTAATTCGTGGCCTAGATCAAGCAAA
67961751 AA
586 AA
* *
67961753 GGATTACTTCCGGGATACATTCGTACCTATGATTTCGTGAGATTTTCATCTCCGCATGGTTATAG
1 GGATTACTTCCGGGATACATCCGTACCTATGATTTCGTGAGATTTTCATCTCCGCATGGTCATAG
* * *
67961818 GGAAATGTATTCCCATGCACTGAACTCGATCCGTATGAGCCTATAATGGGTGAGGATCGAGGAAT
66 CGAAATGTATTCCCATGAACTGAACTCGATCCGTATGAGCCTATAAAGGGTGAGGATCGAGGAAT
*
67961883 CTGCTGACTT-AGGTACCCTTACTCTAGAACCGAGCCACATATAGAGAGACCTAGGAGGTTACCC
131 CTGCTG-CTTCAGGTACCCTTACTCTAGAACCGAGCCACATATAGAGAAACCTAGGAGGTTACCC
*
67961947 TAGATAGAGCCACTCTGAACCCCTAGTGATCACCCGATTAGGTACTTTGTTGGTTATTTATTTCT
195 TAGATAGAGCCACTCCGAACCCCTAGTGATCACCCGATTAGGTACTTTGTTGGTTATTTATTTCT
* * *
67962012 ATACTAACGTGTTTTGTTTTTTGTTTGTTCATGACTGCATTGCATTACATCATTATAGAAAGGAG
260 ATACAAACGTGTTTTGTTTTTTGTTTGTTCATGAATGCATTGCATTACATCATCATAGAAAGGAG
* *
67962077 GTGTTGATTCATACTCGATTGCTAAATAGAACAGTTTGTTATAAGAAAATAAATTTCTTAATAAC
325 GTGTTGATTCATACTCGATTGCTAAATAGAACAGTTTGTCATAAGAAAACAAATTTCTTAATAAC
67962142 GCGGATTACAATACGGTTGTCCGAATTTGGTCCAAGTGAACACGACAGAAGAAGGCTAACAGTTC
390 GCGGATTACAATACGGTTGTCCGAATTTGGTCCAAGTGAACACGACAGAAGAAGGCTAACAGTTC
*
67962207 TTGGAGGAAAACCAAACTTTACCTAAGGATTCAAGCTGATAAAGATTATCCAAAAGTCGTCGCGT
455 TTGGAGGAAAACCAAACTTTACCTAAGGATTCAAGCTGATAAAGATTATCCAAAAGCCGTCGCGT
** * * *
67962272 CCTGACTTTTTTAAAGGAGCTAATCAACATTGCGAGGATAGTAATTTGTGGCCTGGATCAAGCAA
520 CCCAACTTTCTTAAAGGAGCTAATCAACATTGCGAGGATAGTAATTCGTGGCCTAGATCAAGCAA
67962337 AAA
585 AAA
67962340 GGA
1 GGA
67962343 GCTAGTAGAG
Statistics
Matches: 562, Mismatches: 27, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
587 560 1.00
588 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (587 bp):
GGATTACTTCCGGGATACATCCGTACCTATGATTTCGTGAGATTTTCATCTCCGCATGGTCATAG
CGAAATGTATTCCCATGAACTGAACTCGATCCGTATGAGCCTATAAAGGGTGAGGATCGAGGAAT
CTGCTGCTTCAGGTACCCTTACTCTAGAACCGAGCCACATATAGAGAAACCTAGGAGGTTACCCT
AGATAGAGCCACTCCGAACCCCTAGTGATCACCCGATTAGGTACTTTGTTGGTTATTTATTTCTA
TACAAACGTGTTTTGTTTTTTGTTTGTTCATGAATGCATTGCATTACATCATCATAGAAAGGAGG
TGTTGATTCATACTCGATTGCTAAATAGAACAGTTTGTCATAAGAAAACAAATTTCTTAATAACG
CGGATTACAATACGGTTGTCCGAATTTGGTCCAAGTGAACACGACAGAAGAAGGCTAACAGTTCT
TGGAGGAAAACCAAACTTTACCTAAGGATTCAAGCTGATAAAGATTATCCAAAAGCCGTCGCGTC
CCAACTTTCTTAAAGGAGCTAATCAACATTGCGAGGATAGTAATTCGTGGCCTAGATCAAGCAAA
AA
Found at i:67962547 original size:19 final size:19
Alignment explanation
Indices: 67962523--67962568 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
67962513 CTTTCTTTCC
67962523 TTTGCATT-CATCCCATGCA
1 TTTGCATTGCATCCCAT-CA
**
67962542 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATCCCATCA
67962561 TTTGCATT
1 TTTGCATT
67962569 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATCCCATCA
Found at i:67966176 original size:47 final size:47
Alignment explanation
Indices: 67966064--67966391 Score: 454
Period size: 47 Copynumber: 7.1 Consensus size: 47
67966054 GAAATGATAG
67966064 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
67966113 TAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
67966160 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67966207 TAA----T-A--GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
67966247 TAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67966294 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
67966341 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67966388 TAAG
1 TAAG
67966392 TCCCGAAGGG
Statistics
Matches: 253, Mismatches: 19, Indels: 16
0.88 0.07 0.06
Matches are distributed among these distances:
40 37 0.15
42 1 0.00
43 1 0.00
44 1 0.00
45 1 0.00
47 177 0.70
49 35 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:67966263 original size:134 final size:135
Alignment explanation
Indices: 67966071--67966340 Score: 470
Period size: 134 Copynumber: 2.0 Consensus size: 135
67966061 TAGTAAGGCC
* *
67966071 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGCGAT
1 TAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATCGCCGATGCGAT
*
67966136 GAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
65 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
*
67966201 GTGTGA
130 ATGTGA
*
67966207 TAATAGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATCGCCGATGTGATG
1 TAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATCGCCGATGCGATG
*
67966271 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
66 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
67966336 TGTGA
131 TGTGA
67966341 CGGGGCCGAG
Statistics
Matches: 128, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
134 100 0.78
136 28 0.22
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (135 bp):
TAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATCGCCGATGCGATG
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGA
Found at i:67966589 original size:37 final size:38
Alignment explanation
Indices: 67966510--67966589 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 38
67966500 CCGAGCTCTA
* * *
67966510 AAGACCCGATGACTACGTGTGGGAATTTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGAATTTATGTCCAGGT
*
67966548 AAGACCCGATAACTTCGTGT-GGAGA-TTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGGA-ATTTATGTCCAGGT
67966585 AAGAC
1 AAGAC
67966590 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 18 0.49
38 19 0.51
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (38 bp):
AAGACCCGATAACTACGTGTGGGAATTTATGTCCAGGT
Found at i:67969591 original size:3 final size:3
Alignment explanation
Indices: 67969585--67969619 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
67969575 AACAAAAAGA
* *
67969585 AAG AAG AAG AAG AAG AAA AAG AAA AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
67969620 AAGGAGAGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:67969607 original size:18 final size:18
Alignment explanation
Indices: 67969584--67969621 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
67969574 AAACAAAAAG
*
67969584 AAAGAAGAAGAAGAAGAA
1 AAAGAAAAAGAAGAAGAA
67969602 AAAGAAAAAGAAGAAGAA
1 AAAGAAAAAGAAGAAGAA
67969620 AA
1 AA
67969622 GGAGAGGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGAAGAAGAA
Found at i:67970792 original size:64 final size:64
Alignment explanation
Indices: 67970716--67970839 Score: 180
Period size: 64 Copynumber: 1.9 Consensus size: 64
67970706 TCATTCATAA
* * *
67970716 CACATTTAGTTAGGAGCATTTGATTCAT-TTCGATCATAGCAT-TCTAATTATTTGACATAAACA
1 CACATCTAGTTAGGAACAATTGATTCATGTT-GATCATAGCATCT-TAATTATTTGACATAAACA
67970779 T
64 T
*
67970780 CACATCTAGTTAGGAACAATTGATTCATGTTGATCATAGCATCTTAATTATTTGGCATAA
1 CACATCTAGTTAGGAACAATTGATTCATGTTGATCATAGCATCTTAATTATTTGACATAA
67970840 GCATAGGCCT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
64 51 0.94
65 3 0.06
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAACAATTGATTCATGTTGATCATAGCATCTTAATTATTTGACATAAACAT
Found at i:67971095 original size:131 final size:131
Alignment explanation
Indices: 67970861--67971662 Score: 1313
Period size: 131 Copynumber: 6.1 Consensus size: 131
67970851 CGAAACAGAA
*
67970861 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCAGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
*
67970926 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGTTGAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
67970991 T
131 T
* ** * *
67970992 TGTAGATCTTGTCTCCCTGAAGATGCAGTGGGGTGAATCGAAGACGATGGATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
* *
67971057 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAATAGGCTAAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
67971122 T
131 T
*
67971123 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCGAATCGAAGACGACGAATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
* * * * *
67971188 AGTTACAATGAAGTAGATTTAAGCAAATCCTAGCTCCCTAAAGATGTAGTGGAGTAGGTTGAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
67971253 T
131 T
*
67971254 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGAAGAATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
67971319 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
67971384 T
131 T
* * * *
67971385 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGAAAATCGAAGGCGACGAATCTTGGTTTCTTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
*
67971450 AGTTGCA--GAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
67971513 T
131 T
* *
67971514 TGTAGATTTTGTCTCCCTAAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
*
67971579 AGTTGCAGTGAAGCAGATTTAAGCCACCA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
66 AGTTGCAGTGAAGCAGATTTAAG-CA--AGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGA
*
67971643 AGAT
128 ATAT
* *
67971647 TGTAGGTCTTATCTCC
1 TGTAGATCTTGTCTCC
67971663 TCGAAGCCGC
Statistics
Matches: 623, Mismatches: 43, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
129 122 0.20
131 447 0.72
132 2 0.00
133 51 0.08
134 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (131 bp):
TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
T
Found at i:67971284 original size:45 final size:44
Alignment explanation
Indices: 67971221--67971415 Score: 103
Period size: 45 Copynumber: 4.4 Consensus size: 44
67971211 CAAATCCTAG
* * * * *
67971221 CTCCCTAAAGATGTAGTGGAGTAGGTTGAATATTGTAGATCTTGT
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAATA-TGTAGATCTTGT
* * * * * * *
67971266 CTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGAAGAATCTTGG
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAATATGTAG-ATCTTGT
* * * * *
67971311 CTTCCTGAAGTTGCAGTGAAGCAGATT---TAAGCA-AGTCCTAG-
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAATATGTAGA-T-CTTGT
* * * * **
67971352 CTCCCTAAAGATGTAGTGGAGTAGGCTGAATATTGTAGATCTTGT
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAATA-TGTAGATCTTGT
67971397 CTCCCTGAAGTTGCAGTGG
1 CTCCCTGAAGTTGCAGTGG
67971416 GGAAAATCGA
Statistics
Matches: 106, Mismatches: 35, Indels: 18
0.67 0.22 0.11
Matches are distributed among these distances:
40 1 0.01
41 20 0.19
42 6 0.06
44 8 0.08
45 70 0.66
46 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (44 bp):
CTCCCTGAAGTTGCAGTGGAGCAGATTGAATATGTAGATCTTGT
Found at i:67973008 original size:20 final size:19
Alignment explanation
Indices: 67972965--67973011 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
67972955 TGTTCTTATA
* *
67972965 TATTT-AAACCTTTTTATT
1 TATTTAAAACCATTTTAGT
67972983 TATTTAAAACCATTTTAGT
1 TATTTAAAACCATTTTAGT
*
67973002 TATTTTAAAC
1 TATTTAAAAC
67973012 TTTGTATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.53
Consensus pattern (19 bp):
TATTTAAAACCATTTTAGT
Found at i:67973292 original size:32 final size:31
Alignment explanation
Indices: 67973255--67973326 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 31
67973245 TTTTATGTAT
67973255 TATATTTTAAACTATT-TATATTTTATTTTAAA
1 TATATTTTAAACT-TTATATA-TTTATTTTAAA
*
67973287 TATATTCTTAAACTTTATTTATTTATTTTAAA
1 TATATT-TTAAACTTTATATATTTATTTTAAA
*
67973319 -ATCTTTTA
1 TATATTTTA
67973327 TTTATTACCC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
30 3 0.08
31 4 0.11
32 19 0.53
33 10 0.28
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.60
Consensus pattern (31 bp):
TATATTTTAAACTTTATATATTTATTTTAAA
Found at i:67981325 original size:19 final size:20
Alignment explanation
Indices: 67981301--67981338 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67981291 GGTACCACCA
67981301 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
67981320 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
67981339 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:67981677 original size:93 final size:93
Alignment explanation
Indices: 67981567--67981737 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67981557 GCCCCTAAGT
* *
67981567 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
67981632 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
67981660 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
67981725 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67981738 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67981734 original size:46 final size:46
Alignment explanation
Indices: 67981562--67981734 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
67981552 AACCCGCCCC
* * * *
67981562 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
67981608 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
67981656 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
67981701 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67981735 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:67982191 original size:30 final size:30
Alignment explanation
Indices: 67982157--67982216 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
67982147 ATTTAATACG
67982157 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
67982187 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
67982217 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:67984866 original size:20 final size:21
Alignment explanation
Indices: 67984838--67984878 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67984828 ATGTGCCTAG
*
67984838 GGTGATTTA-GCATTGAGTTT
1 GGTGATTTATGAATTGAGTTT
*
67984858 GGTGTTTTATGAATTGAGTTT
1 GGTGATTTATGAATTGAGTTT
67984879 TATGGTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.20, C:0.02, G:0.29, T:0.49
Consensus pattern (21 bp):
GGTGATTTATGAATTGAGTTT
Found at i:67986329 original size:47 final size:47
Alignment explanation
Indices: 67986271--67986764 Score: 817
Period size: 47 Copynumber: 10.5 Consensus size: 47
67986261 ATTCAGCCAA
*
67986271 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGATTGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
67986318 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
67986365 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
67986412 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
67986459 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
67986508 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
67986555 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
67986602 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
67986649 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
67986696 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
67986743 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
67986765 TCCCGAATGG
Statistics
Matches: 423, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 376 0.89
49 47 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:67986601 original size:190 final size:188
Alignment explanation
Indices: 67986271--67986764 Score: 844
Period size: 190 Copynumber: 2.6 Consensus size: 188
67986261 ATTCAGCCAA
*
67986271 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGATTGTGAAAGTGTATATGTGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
67986336 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
*
67986401 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
67986459 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGT
*
67986524 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
64 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
67986589 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
129 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
*
67986649 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * * * * * * * *
67986714 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67986765 TCCCGAATGG
Statistics
Matches: 289, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
188 105 0.36
190 184 0.64
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (188 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:67986939 original size:37 final size:37
Alignment explanation
Indices: 67986883--67986961 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
67986873 CCGAGCTCTA
* *
67986883 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
67986920 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67986957 AAGAC
1 AAGAC
67986962 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67990742 original size:39 final size:39
Alignment explanation
Indices: 67990699--67990784 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
67990689 TTTAGTTAGT
* * * *
67990699 TTAGTTTGTGTCTTTAATTATGTCATAGTTTGAACATCA
1 TTAGTATGAGTCTTTAATTATATCATAGTTTGAACAACA
67990738 TTAGTATGAGTCTTTAATTATATCATAGTTTGAACAACA
1 TTAGTATGAGTCTTTAATTATATCATAGTTTGAACAACA
*
67990777 TTAATATG
1 TTAGTATG
67990785 GGTTTTGCAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.45
Consensus pattern (39 bp):
TTAGTATGAGTCTTTAATTATATCATAGTTTGAACAACA
Found at i:67990921 original size:51 final size:51
Alignment explanation
Indices: 67990792--67990922 Score: 201
Period size: 50 Copynumber: 2.6 Consensus size: 51
67990782 ATGGGTTTTG
* *
67990792 CATTTAATAAAGTCATGCATTATGTAACTCTCATGTAAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCTCATGTAAGTTAAGTTTGCAT
* * *
67990843 CA-TAAATTATGACATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCTCATGTAAGTTAAGTTTGCAT
*
67990893 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
67990923 ATTTGTTCAT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
50 45 0.63
51 26 0.37
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCTCATGTAAGTTAAGTTTGCAT
Found at i:67992623 original size:93 final size:93
Alignment explanation
Indices: 67992491--67992661 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
67992481 CGCCCATAAG
* *
67992491 CGAACTCAGACTCAACTCAATGAGCTCGAGCGTTCGCATCCATAAGTGAACTCAGAATCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACGTTCGCATCCATAAGTGAACTCAGAATCAACTCA
*
67992556 ATGAGCTTGGATGCTTAGTTACATCTCA
66 ACGAGCTTGGATGCTTAGTTACATCTCA
* * * * * *
67992584 CGAACTCGGACTCAACTCAACGAGTTTGAACGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACGTTCGCATCCATAAGTGAACTCAGAATCAACTCA
*
67992649 ACGAGTTTGGATG
66 ACGAGCTTGGATG
67992662 TCCAAATATC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGAACGTTCGCATCCATAAGTGAACTCAGAATCAACTCA
ACGAGCTTGGATGCTTAGTTACATCTCA
Found at i:67992639 original size:46 final size:46
Alignment explanation
Indices: 67992484--67992657 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 46
67992474 TGTAACCCGC
* * * *
67992484 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGAGCGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTTGAGCGTTTGCAT
* * * * * *
67992530 CCATAAGTGAACTCAGAATCAACTCAATGAGCTTGGATGCTTAGTTACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAG-TTTGA-GCGT--TTGCAT
* * *
67992580 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGAACGTTTGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTTGAGCGTTTGCAT
* *
67992623 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTG
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTTG
67992658 GATGTCCAAA
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 4 0.04
46 60 0.58
47 23 0.22
48 5 0.05
49 1 0.01
50 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGTTTGAGCGTTTGCAT
Found at i:67996782 original size:46 final size:46
Alignment explanation
Indices: 67996611--67996788 Score: 159
Period size: 46 Copynumber: 3.8 Consensus size: 46
67996601 TGTAACCCGC
**
67996611 CCATAAGCGAACTCAGACTCAACTCAACGAGCTT-GGGCGTTTGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAG-TTCGGATGTTTGCAT
* * * * * *
67996657 CCATAAGTGAACTC-GAACTCAACTAAATGAGCTCAGATGCCTAGTTACAT
1 CCATAAGCGAACTCAG-ACTCAACTCAACGAGTTCGGATG--T--TTGCAT
* * *
67996707 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGATGTTTGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGATGTTTGCAT
*
67996750 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGATG
67996789 CCCAAATATC
Statistics
Matches: 104, Mismatches: 18, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 5 0.05
46 57 0.55
47 26 0.25
48 4 0.04
49 1 0.01
50 5 0.05
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGATGTTTGCAT
Found at i:67996789 original size:93 final size:93
Alignment explanation
Indices: 67996618--67996790 Score: 242
Period size: 93 Copynumber: 1.9 Consensus size: 93
67996608 CGCCCATAAG
*
67996618 CGAACTCAGACTCAACTCAACGAGCTTGGGCGTTTGCATCCATAAGTGAACTCGAACTCAACTAA
1 CGAACTCAGACTCAACTCAACGAGCTTGGACGTTTGCATCCATAAGTGAACTCGAACTCAACTAA
*
67996683 ATGAGCTCAGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
* * *
67996711 CGAACTCGGACTCAACTCAATGAG-TTCGGATGTTTGCATCCATAAGTGAACTC-AGACTCAACT
1 CGAACTCAGACTCAACTCAACGAGCTT-GGACGTTTGCATCCATAAGTGAACTCGA-ACTCAACT
* * *
67996774 CAACGAGTTCGGATGCC
64 AAACGAGCTCAGATGCC
67996791 CAAATATCTG
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 3 0.04
93 67 0.96
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTTGGACGTTTGCATCCATAAGTGAACTCGAACTCAACTAA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:67999276 original size:40 final size:41
Alignment explanation
Indices: 67999220--67999412 Score: 259
Period size: 40 Copynumber: 4.8 Consensus size: 41
67999210 CATTTGAATG
* * *
67999220 ATATCCGGGTTAAGACCGGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
67999260 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
67999300 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
67999340 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
67999380 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT
67999413 TGTAGTTATA
Statistics
Matches: 131, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.02
40 124 0.95
41 5 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
Found at i:67999357 original size:80 final size:80
Alignment explanation
Indices: 67999224--67999412 Score: 333
Period size: 80 Copynumber: 2.4 Consensus size: 80
67999214 TGAATGATAT
*
67999224 CCGGGTTAAGACCGGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
67999289 TGCGAGTTGCTATAC
66 TGCGAGTTGATATAC
67999304 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
67999369 TGCGAGTTGATATAT
66 TGCGAGTTGATATAC
* *
67999384 CCGGGCTAAGACCCGAAGGCATTTGTGCT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCT
67999413 TGTAGTTATA
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 104 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGATATAC
Found at i:68017929 original size:1 final size:1
Alignment explanation
Indices: 68017923--68017969 Score: 94
Period size: 1 Copynumber: 47.0 Consensus size: 1
68017913 AAACAAAGTC
68017923 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
68017970 CTTTAAAGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:68021355 original size:84 final size:88
Alignment explanation
Indices: 68021203--68021550 Score: 443
Period size: 92 Copynumber: 4.0 Consensus size: 88
68021193 GTGAATGTAA
68021203 TGTGA-AAGGCCGAAT-GCCAATGTGATGAAAGTGAAA-TATATGTGATAA-GCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAAGTATATGTGATAAGGCCGAATGGCCAA
68021264 TGTGATGAA-GTGAAAGTGTATG
66 TGTGATGAATGTGAAAGTGTATG
68021286 TGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAAGTATA-GTGATAA-G-CGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAAGTATATGTGATAAGGCCGAATGGCCAA
*
68021348 TGTGATGAA-GTGAACGTGTA--
66 TGTGATGAATGTGAAAGTGTATG
*
68021368 TGTGATAAAGCCGAATGGCCAATGTGATGAAAGTGAACATGTATATGTGTGATAAGG-CGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAA-A-GTATA--TGTGATAAGGCCGAATGG
68021432 CCAAT-TGATGAATGTGAACATGTGTATG
62 CCAATGTGATGAATGTGAA-A-GTGTATG
* * * * *
68021460 TGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAGCATGTGTATGTGAGATAAGGCCTAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGA--AAGTATATGT--GATAAGGCCGAATGG
*
68021525 CCGATGTGATGAATGTGAAAGTGTAT
62 CCAATGTGATGAATGTGAAAGTGTAT
68021551 AAATGTGATA
Statistics
Matches: 235, Mismatches: 10, Indels: 31
0.85 0.04 0.11
Matches are distributed among these distances:
82 36 0.15
83 6 0.03
84 45 0.19
85 29 0.12
86 4 0.02
87 14 0.06
88 18 0.08
90 8 0.03
92 50 0.21
93 11 0.05
94 14 0.06
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (88 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAAAGTATATGTGATAAGGCCGAATGGCCAA
TGTGATGAATGTGAAAGTGTATG
Found at i:68021458 original size:47 final size:45
Alignment explanation
Indices: 68021243--68021550 Score: 363
Period size: 47 Copynumber: 7.0 Consensus size: 45
68021233 GTGAAATATA
*
68021243 TGTGATAAGCCGAATGGCCAATGTGATGAA-GTGAA-AGTGTATG
1 TGTGATAAGGCGAATGGCCAATGTGATGAATGTGAACAGTGTATG
*
68021286 TGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAA-A--GTAT-
1 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAACAGTGTATG
*
68021328 AGTGATAA-GCGAATGGCCAATGTGATGAA-GTGAAC-GTGTA--
1 TGTGATAAGGCGAATGGCCAATGTGATGAATGTGAACAGTGTATG
* * *
68021368 TGTGATAAAGCCGAATGGCCAATGTGATGAAAGTGAACATGTATATG
1 TGTGAT-AAGGCGAATGGCCAATGTGATGAATGTGAACA-GTGTATG
68021415 TGTGATAAGGCGAATGGCCAAT-TGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCGAATGGCCAATGTGATGAATGTGAACA-GTGTATG
* *
68021460 TGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAGCATGTGTATG
1 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAACA-GTGTATG
* * *
68021507 TGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTAT
1 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAACAGTGTAT
68021551 AAATGTGATA
Statistics
Matches: 236, Mismatches: 15, Indels: 26
0.85 0.05 0.09
Matches are distributed among these distances:
39 5 0.02
40 25 0.11
41 6 0.03
42 27 0.11
43 19 0.08
44 20 0.08
45 47 0.20
46 27 0.11
47 60 0.25
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (45 bp):
TGTGATAAGGCGAATGGCCAATGTGATGAATGTGAACAGTGTATG
Found at i:68021735 original size:37 final size:37
Alignment explanation
Indices: 68021679--68021758 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
68021669 CCGGGCTCTA
* * *
68021679 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
68021716 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
68021753 AAGACT
1 AAGACT
68021759 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:68023637 original size:21 final size:21
Alignment explanation
Indices: 68023611--68023675 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
68023601 GTGAGTATCG
68023611 GCTAGTCCGAAGAGCATTCGT
1 GCTAGTCCGAAGAGCATTCGT
* * *
68023632 GCTAGT--G-A-TGTATCCG-
1 GCTAGTCCGAAGAGCATTCGT
68023648 GCTAAGTCCGAAGAGCATTCGT
1 GCT-AGTCCGAAGAGCATTCGT
68023670 GCTAGT
1 GCTAGT
68023676 GTATCGTAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
16 3 0.09
17 8 0.25
18 1 0.03
19 2 0.06
20 1 0.03
21 14 0.44
22 3 0.09
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (21 bp):
GCTAGTCCGAAGAGCATTCGT
Found at i:68023712 original size:63 final size:65
Alignment explanation
Indices: 68023548--68023880 Score: 337
Period size: 77 Copynumber: 4.9 Consensus size: 65
68023538 GATGATGCTA
68023548 AGTCCGA-AGCATCGT-GTATGATTATCCGGCTAAGTCCGAAGAGCATTC-TGCTAGTGAGTATC
1 AGTCCGAGAGCATCGTAG--TGATTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGT--GTATC
68023610 GGCT
62 GGCT
68023614 AGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGTA
1 AGTCCG-AGAGCA-TC--G-TAGTGAT-TATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGTA
68023679 TC-G-T
60 TCGGCT
68023683 AGTCCGAGAGCATCGTAGTGATTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 AGTCCGAGAGCATCGTAGTGATTATCCGGCTAAGTCCGAAGAGCATTCGTGCTA--G-TGTAT-C
68023748 GGGCT
62 -GGCT
68023753 AAGTCCCGAAGAGCATCGTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGA
1 -AGT-CCG-AGAGCATC--G-TAGTGAT-TATCCGGCTAAGTCCGAAGAGCATTCGTGCTA--G-
68023818 TGTATCCGG-T
56 TGTAT-CGGCT
*
68023828 AAGTCC--GAG-A-C-TAGTGAGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTG
1 -AGTCCGAGAGCATCGTAGTGATTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTG
68023881 ATGTATCCGG
Statistics
Matches: 243, Mismatches: 1, Indels: 51
0.82 0.00 0.17
Matches are distributed among these distances:
61 2 0.01
62 1 0.00
63 32 0.13
64 39 0.16
65 8 0.03
66 11 0.05
67 4 0.02
68 10 0.04
69 11 0.05
70 3 0.01
71 16 0.07
72 30 0.12
73 16 0.07
74 2 0.01
75 6 0.02
76 9 0.04
77 43 0.18
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (65 bp):
AGTCCGAGAGCATCGTAGTGATTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGTATCGGCT
Found at i:68023811 original size:38 final size:38
Alignment explanation
Indices: 68023544--68023948 Score: 470
Period size: 38 Copynumber: 11.4 Consensus size: 38
68023534 ATTCGATGAT
68023544 GCTAAGTCCG-A-AGCA-TCGTG-TA-TGAT-TATCCG
1 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
68023576 GCTAAGTCCGAAGAGCATTC-TGCTAGTGA-GTAT-CG
1 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
68023611 GCT-AGTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
68023648 GCTAAGTCCGAAGAGCATTCGTGCTA--G-TGTAT-C-
1 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
68023681 G-T-AGTCCG-AGAGCA-TCGTAG----TGAT-TATCCG
1 GCTAAGTCCGAAGAGCATTCGT-GCTAGTGATGTATCCG
68023711 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCC-G
68023750 GCTAAGTCCCGAAGAGCA-TCGTGCTAGTGATGTATCCG
1 GCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCG
68023788 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
68023826 G-TAAGTCC---GAG-A------CTAGTGA-GTATCCG
1 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
68023852 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCC-G
*
68023891 GCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCG
1 GCTAAG-TCCGAAGAGCATTCGTGCTAGTGATGTATCCG
*
68023930 TGCTAAATCCCGAAGAGCA
1 -GCTAAGT-CCGAAGAGCA
68023949 ATCATGCTGG
Statistics
Matches: 328, Mismatches: 2, Indels: 78
0.80 0.00 0.19
Matches are distributed among these distances:
26 8 0.02
27 14 0.04
28 4 0.01
29 6 0.02
30 11 0.03
31 8 0.02
32 17 0.05
33 10 0.03
34 30 0.09
35 23 0.07
36 11 0.03
37 33 0.10
38 62 0.19
39 36 0.11
40 55 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (38 bp):
GCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCG
Found at i:68023812 original size:77 final size:76
Alignment explanation
Indices: 68023683--68023948 Score: 350
Period size: 77 Copynumber: 3.7 Consensus size: 76
68023673 AGTGTATCGT
68023683 AGTCCG-AGAGCATC--G-TAGTGAT-TATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
1 AGTCCGAAGAGCATCGTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
68023743 TATCCGGGCTA
66 TATCCGGGCTA
68023754 AGTCCCGAAGAGCATCGTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGAT
1 AGT-CCGAAGAGCATCGTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGAT
68023819 GTATCC-GG-TA
65 GTATCCGGGCTA
68023829 AGTCC---GAG-A-----CTAGTGA-GTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
1 AGTCCGAAGAGCATCGTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
68023884 TATCCGGGCTA
66 TATCCGGGCTA
* *
68023895 AGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCA
1 AG-TCCGAAGAGCA-TCGTGCTAGTGATGTATCCG-GCTAAGT-CCGAAGAGCA
68023949 ATCATGCTGG
Statistics
Matches: 171, Mismatches: 2, Indels: 35
0.82 0.01 0.17
Matches are distributed among these distances:
64 44 0.26
65 9 0.05
66 4 0.02
67 3 0.02
70 4 0.02
71 7 0.04
72 3 0.02
73 8 0.05
74 2 0.01
75 6 0.04
76 9 0.05
77 50 0.29
78 6 0.04
79 6 0.04
80 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (76 bp):
AGTCCGAAGAGCATCGTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
TATCCGGGCTA
Found at i:68023851 original size:26 final size:28
Alignment explanation
Indices: 68023811--68023862 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
68023801 AGCATTCGTG
68023811 CTAGTGATGTATCCGG-TAAGTCCGAGA
1 CTAGTGATGTATCCGGCTAAGTCCGAGA
68023838 CTAGTGA-GTATCCGGCTAAGTCCGA
1 CTAGTGATGTATCCGGCTAAGTCCGA
68023863 AGAGCATTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (28 bp):
CTAGTGATGTATCCGGCTAAGTCCGAGA
Found at i:68023882 original size:141 final size:139
Alignment explanation
Indices: 68023570--68023948 Score: 562
Period size: 141 Copynumber: 2.7 Consensus size: 139
68023560 CGTGTATGAT
68023570 TATCCGGCTAAGTCCGAAGAGCATTC-TGCTAGTGA-GTAT-C-GGCT-AGTCCGAAGAGCATTC
1 TATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
68023630 GTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGTATCGTAGTCCGAGAGCA
66 GTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGTATCGTAGTCC-AGAGCA
*
68023695 TCGTAGTGAT
130 TCGTAGTGAG
68023705 TATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA-T
1 TATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT-CCGAAGAGCATT
68023769 CGTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGTAAGTCC
65 CGTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTA--G-TGTAT-C-GT-AGTCC
68023834 -GAG-A-C-TAGTGAG
124 AGAGCATCGTAGTGAG
68023846 TATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATT
* *
68023911 CGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCA
65 CGTGCTAGTGATGTATCCG-GCTAAGT-CCGAAGAGCA
68023949 ATCATGCTGG
Statistics
Matches: 225, Mismatches: 3, Indels: 23
0.90 0.01 0.09
Matches are distributed among these distances:
135 26 0.12
136 9 0.04
137 4 0.02
138 1 0.00
139 4 0.02
140 49 0.22
141 77 0.34
142 22 0.10
143 12 0.05
144 14 0.06
145 2 0.01
146 5 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (139 bp):
TATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
GTGCTAGTGATGTATCCGGCTAAGTCCGAAGAGCATTCGTGCTAGTGTATCGTAGTCCAGAGCAT
CGTAGTGAG
Found at i:68023904 original size:40 final size:40
Alignment explanation
Indices: 68023838--68023948 Score: 165
Period size: 40 Copynumber: 2.9 Consensus size: 40
68023828 AAGTCCGAGA
68023838 CTAGTGA-GTATCC-GGCTAAG-TCCGAAGAGCATTCGTG
1 CTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTG
68023875 CTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTG
1 CTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTG
* * * *
68023915 CTAGTGATATATCCGTGCTAAATCCCGAAGAGCA
1 CTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
68023949 ATCATGCTGG
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
37 7 0.10
38 6 0.09
39 7 0.10
40 47 0.70
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTG
Found at i:68023921 original size:104 final size:104
Alignment explanation
Indices: 68023734--68023929 Score: 335
Period size: 104 Copynumber: 1.9 Consensus size: 104
68023724 AGCATTCGTG
68023734 CTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATCGTGCTAGTGATGTATCCGGCTAAGTCCGA
1 CTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATCGTGCTAGTGATGTATCCGGCTAAGTCCGA
*
68023799 AGAGCATTCGTGCTAGTGATGTATCCGGTAAGTCCGAGA
66 AGAGCATTCGTGCTAGTGATATATCCGGTAAGTCCGAGA
68023838 CTAGTGA-GTATCC-GGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTC
1 CTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA-TCGTGCTAGTGATGTATCC-GGCTAAG-TC
68023900 CGAAGAGCATTCGTGCTAGTGATATATCCG
63 CGAAGAGCATTCGTGCTAGTGATATATCCG
68023930 TGCTAAATCC
Statistics
Matches: 88, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
101 10 0.11
102 27 0.31
103 13 0.15
104 38 0.43
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (104 bp):
CTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATCGTGCTAGTGATGTATCCGGCTAAGTCCGA
AGAGCATTCGTGCTAGTGATATATCCGGTAAGTCCGAGA
Found at i:68028300 original size:23 final size:23
Alignment explanation
Indices: 68028274--68028395 Score: 62
Period size: 23 Copynumber: 5.2 Consensus size: 23
68028264 CGAATGGCCA
68028274 ATGTGATGAAAGTGAACATGTAT
1 ATGTGATGAAAGTGAACATGTAT
* *
68028297 ATGTG-TGATAAG-G-CCGAATGGCCA-
1 ATGTGATGA-AAGTGAAC--AT-G-TAT
68028321 ATGTGATGAAAGTGAACATGTAT
1 ATGTGATGAAAGTGAACATGTAT
* *
68028344 ATGTG-TGATAAAGCCG-A-ATGGCCA-
1 ATGTGATG--AAAG-TGAACAT-G-TAT
68028368 ATGTGATGAAAGTGAACATGTAT
1 ATGTGATGAAAGTGAACATGTAT
68028391 ATGTG
1 ATGTG
68028396 TGATAAGGCC
Statistics
Matches: 73, Mismatches: 8, Indels: 36
0.62 0.07 0.31
Matches are distributed among these distances:
21 1 0.01
22 9 0.12
23 29 0.40
24 24 0.33
25 9 0.12
26 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.27
Consensus pattern (23 bp):
ATGTGATGAAAGTGAACATGTAT
Found at i:68028304 original size:25 final size:25
Alignment explanation
Indices: 68028275--68028399 Score: 77
Period size: 25 Copynumber: 5.2 Consensus size: 25
68028265 GAATGGCCAA
68028275 TGTGATGAAAGTGAACATGTATATG
1 TGTGATGAAAGTGAACATGTATATG
* * *** *
68028300 TGTGAT-AAGGCCG-A-ATGGCCA-A
1 TGTGATGAAAG-TGAACATGTATATG
68028322 TGTGATGAAAGTGAACATGTATATG
1 TGTGATGAAAGTGAACATGTATATG
* *** *
68028347 TGTGAT-AAAGCCG-A-ATGGCCA-A
1 TGTGATGAAAG-TGAACATGTATATG
68028369 TGTGATGAAAGTGAACATGTATATG
1 TGTGATGAAAGTGAACATGTATATG
68028394 TGTGAT
1 TGTGAT
68028400 AAGGCCGAAT
Statistics
Matches: 68, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 14 0.21
23 17 0.25
24 17 0.25
25 20 0.29
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (25 bp):
TGTGATGAAAGTGAACATGTATATG
Found at i:68028308 original size:47 final size:47
Alignment explanation
Indices: 68028248--68028542 Score: 441
Period size: 47 Copynumber: 6.3 Consensus size: 47
68028238 GTGAAAGTGT
68028248 TATGTGTGAATAAGGCCGAATGGCCAATGTGATGAAAGTGAACATGTA
1 TATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACATGTA
68028296 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACATGTA
*
68028343 TATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACATGTA
* *
68028390 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACATGTA
* * * *
68028437 TATGTGTGATAAGGCCGAGTGGCCAATGTGAT-AATGTGAGCATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACATGTA
* * * *
68028483 TATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA-TGTA
**
68028530 TAAATGTGATAAG
1 TATGTGTGATAAG
68028543 TCCCGAAGGG
Statistics
Matches: 230, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
46 42 0.18
47 180 0.78
48 8 0.03
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACATGTA
Found at i:68028717 original size:37 final size:37
Alignment explanation
Indices: 68028661--68028740 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
68028651 CCGGGCTCTA
* * *
68028661 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
68028698 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
68028735 AAGACT
1 AAGACT
68028741 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:68030644 original size:39 final size:39
Alignment explanation
Indices: 68030591--68030964 Score: 682
Period size: 39 Copynumber: 9.6 Consensus size: 39
68030581 TTGTGCTATA
68030591 TATCC-GGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
68030629 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
68030668 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGAT-
1 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
68030706 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
68030745 TATCC-GGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
68030783 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
68030822 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
68030861 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
*
68030900 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATG
* *
68030940 TATCCGTGCTAAATCCCGAAGAGCA
1 TATCCGGGCTAAGT-CCGAAGAGCA
68030965 ATCATGCTGG
Statistics
Matches: 328, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
38 81 0.25
39 201 0.61
40 46 0.14
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
TATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:68035348 original size:47 final size:47
Alignment explanation
Indices: 68035264--68035702 Score: 578
Period size: 47 Copynumber: 9.3 Consensus size: 47
68035254 TAATTGAATA
* *
68035264 AATGTGAA-AGTGTATATGTGTGA-ATAGGGCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATGTGAGATA-AGGCCGAATGGCCAATGTGATG
* * *
68035311 AATGTGAACATGCATATATGAGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* *
68035358 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
68035405 AAAGTGAACATGTGTATGTGTGATAAGACCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * *
68035452 AATGTGAACATGCATATATGAGATAAGACCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* *
68035499 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * *
68035546 AAAGTGAACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * * *
68035593 AAAGTGAACAGGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
68035640 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
68035687 AATGTGAA-AGTGTATA
1 AATGTGAACA-TGTATA
68035703 AATGTGATAA
Statistics
Matches: 351, Mismatches: 38, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
46 1 0.00
47 348 0.99
48 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (47 bp):
AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
Found at i:68035702 original size:141 final size:141
Alignment explanation
Indices: 68035274--68035712 Score: 641
Period size: 141 Copynumber: 3.1 Consensus size: 141
68035264 AATGTGAAAG
* *
68035274 TGTATATGTGTGA-ATAGGGCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAG
1 TGTATATGTGTGATA-AAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAG
** *
68035338 GCCGAGTGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGA
65 GCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGA
68035403 TGAAAGTGAACA
130 TGAAAGTGAACA
*
68035415 TGTGTATGTGTGAT-AAGACCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAG
1 TGTATATGTGTGATAAAG-CCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAG
* * *
68035479 ACCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGA
65 GCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGA
68035544 TGAAAGTGAACA
130 TGAAAGTGAACA
* * ** * *
68035556 TGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTGAACAGGTGTATGTGTGATAAGG
1 TGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
* * *
68035621 CCGAGTGGCCAATGTGATGAATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGAT
66 CCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGAT
*
68035686 GAATGTGAA-A
131 GAAAGTGAACA
**
68035696 GTGTATAAATGTGATAA
1 -TGTATATGTGTGATAA
68035713 GTCCCGAAGG
Statistics
Matches: 269, Mismatches: 25, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
140 3 0.01
141 263 0.98
142 3 0.01
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.26
Consensus pattern (141 bp):
TGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
CCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGAT
GAAAGTGAACA
Found at i:68035888 original size:37 final size:37
Alignment explanation
Indices: 68035832--68035911 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
68035822 CCGGGCTCTA
* * *
68035832 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
68035869 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
68035906 AAGACT
1 AAGACT
68035912 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:68039640 original size:39 final size:39
Alignment explanation
Indices: 68039597--68039773 Score: 230
Period size: 39 Copynumber: 4.5 Consensus size: 39
68039587 GTGTGAGATA
* * * *
68039597 TATATCCGGGCTAATTCCTGAAGGCGTTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
68039636 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
68039675 TATATCCGGGCTAAGTCCCGAAGGCATTCGTACTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
68039714 TATATCTGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
68039752 TATATCTGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
68039774 CATGCTTTGT
Statistics
Matches: 123, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
38 21 0.17
39 94 0.76
40 8 0.07
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.32
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:68044556 original size:39 final size:39
Alignment explanation
Indices: 68044500--68044747 Score: 365
Period size: 39 Copynumber: 6.4 Consensus size: 39
68044490 ATAATGGAGA
** *
68044500 ATTATATCCGGTTTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
68044539 ATTATATCTGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
68044578 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTACTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
68044617 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
*
68044656 GTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
*
68044695 ATTATATCCGGGCTAAAGTCCCGCAA-GC-TTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCG-AAGGCATTCGTGCTGGT
68044734 ATTATATCCGGGCT
1 ATTATATCCGGGCT
68044748 TAAAGTCCTG
Statistics
Matches: 191, Mismatches: 16, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
39 179 0.94
40 10 0.05
41 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
Found at i:68054674 original size:68 final size:71
Alignment explanation
Indices: 68054532--68054674 Score: 186
Period size: 68 Copynumber: 2.1 Consensus size: 71
68054522 TAATTAAACT
** * *
68054532 TAATCACTTTAATATTAAATTTAATCTAATATTTAATCAAGATAAATATTAGTTTAAATTTAATA
1 TAATCACTTTAATATTAAATTTAATAAAATATCTAATCAAGATAAATATTAATTTAAATTTAATA
*
68054597 TTAAGA
66 TTAAAA
* *
68054603 TAATCACTTTAATATTAAA-TTAATAAAATA-CT-ATTAAGATAAGTATTGAATTT-AATTTAAT
1 TAATCACTTTAATATTAAATTTAATAAAATATCTAATCAAGATAAATATT-AATTTAAATTTAAT
68054664 ATTAAAA
65 ATTAAAA
68054671 TAAT
1 TAAT
68054675 ATTATTTCTG
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
68 31 0.48
69 5 0.08
70 9 0.14
71 19 0.30
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43
Consensus pattern (71 bp):
TAATCACTTTAATATTAAATTTAATAAAATATCTAATCAAGATAAATATTAATTTAAATTTAATA
TTAAAA
Found at i:68055086 original size:13 final size:13
Alignment explanation
Indices: 68055068--68055092 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68055058 CATATTAATT
68055068 TTAATTTAATTTA
1 TTAATTTAATTTA
68055081 TTAATTTAATTT
1 TTAATTTAATTT
68055093 TACTTGATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTAATTTAATTTA
Found at i:68062270 original size:39 final size:38
Alignment explanation
Indices: 68062194--68062298 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 38
68062184 TTATCGAAAC
* * * *
68062194 CATTGTTATAACTATTGTAATTATAATTTACGATCAAA
1 CATTATTATAATTATTATAATTATAATTTACAATCAAA
* * *
68062232 TATTATTATAATTATTATAATTGTAAATTTTCAATCAAA
1 CATTATTATAATTATTATAATTAT-AATTTACAATCAAA
68062271 CATTATTATAATTATGT-TAATTATAATT
1 CATTATTATAATTAT-TATAATTATAATT
68062299 ATTATATTAG
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
38 23 0.41
39 32 0.57
40 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.48
Consensus pattern (38 bp):
CATTATTATAATTATTATAATTATAATTTACAATCAAA
Found at i:68062312 original size:23 final size:24
Alignment explanation
Indices: 68062272--68062317 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
68062262 TCAATCAAAC
*
68062272 ATTATTATAATTATGTTAATTATA
1 ATTATTATAATTAGGTTAATTATA
68062296 ATTATTAT-ATTAGGTTAATTAT
1 ATTATTATAATTAGGTTAATTAT
68062318 TATAATGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (24 bp):
ATTATTATAATTAGGTTAATTATA
Found at i:68062764 original size:101 final size:101
Alignment explanation
Indices: 68062584--68062784 Score: 357
Period size: 101 Copynumber: 2.0 Consensus size: 101
68062574 GGTTTTCCAT
* *
68062584 ACGATTAAAAGTAATCGTTCATACCCTTCTCACCCCGATTCGTTTCTCGCACATGGATCACTGGA
1 ACGAGTAAAAGTAATCGTTCATACCCTTCTCACCCCGATTCGTTTCTCGCACATGGATCACTAGA
* *
68062649 TGTGATCGCCAAATTTAATTTTTTTGGCTGTACCAG
66 TGTGATCGCCAAATTTAATTTTTTCGGCTGCACCAG
68062685 ACGAGTAAAAGTAATCGTTCATACCCTTCTCACCCCGATTCGTTTCTCGCACATGGATCACTAGA
1 ACGAGTAAAAGTAATCGTTCATACCCTTCTCACCCCGATTCGTTTCTCGCACATGGATCACTAGA
*
68062750 TTTGATCGCCAAATTTAATTTTTTCGGCTGCACCA
66 TGTGATCGCCAAATTTAATTTTTTCGGCTGCACCA
68062785 TAAGGTGTAC
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 95 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (101 bp):
ACGAGTAAAAGTAATCGTTCATACCCTTCTCACCCCGATTCGTTTCTCGCACATGGATCACTAGA
TGTGATCGCCAAATTTAATTTTTTCGGCTGCACCAG
Found at i:68063400 original size:41 final size:40
Alignment explanation
Indices: 68063290--68063400 Score: 134
Period size: 41 Copynumber: 2.7 Consensus size: 40
68063280 TGACTTGGCA
* * *
68063290 GAAAGTGCTTCCAACTAGAAGCGCTTTTCAGGCAACACGTT
1 GAAAATGCTTCCAACTAGAAGCG-TTTTCCGGCAACACGCT
* * *
68063331 GAAAATGCTTCCAAATAGAAGCTTTTTCCTGCAAATCAC-CT
1 GAAAATGCTTCCAACTAGAAGCGTTTTCCGGC-AA-CACGCT
68063372 GAAAATGCTTCCAACTAGAAGCGTTTTCC
1 GAAAATGCTTCCAACTAGAAGCGTTTTCC
68063401 AAAAAATGAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 7 0.12
41 50 0.83
42 3 0.05
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (40 bp):
GAAAATGCTTCCAACTAGAAGCGTTTTCCGGCAACACGCT
Found at i:68063427 original size:29 final size:29
Alignment explanation
Indices: 68063395--68063456 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
68063385 ACTAGAAGCG
* * *
68063395 TTTTCCAAAAAATGATCTATTCTCGTAAT
1 TTTTCCAAAAAATGACCTATTCACATAAT
* *
68063424 TTTTCCTAAAATTGACCTATTCACATAAT
1 TTTTCCAAAAAATGACCTATTCACATAAT
68063453 TTTT
1 TTTT
68063457 TTGATGTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (29 bp):
TTTTCCAAAAAATGACCTATTCACATAAT
Found at i:68070151 original size:12 final size:12
Alignment explanation
Indices: 68070134--68070170 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
68070124 ACACCTATGC
68070134 GCCAGGCCGTGT
1 GCCAGGCCGTGT
68070146 GCCAGGCCGTGT
1 GCCAGGCCGTGT
*
68070158 GCTAGGCCGTGT
1 GCCAGGCCGTGT
68070170 G
1 G
68070171 AAGCTATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.08, C:0.30, G:0.43, T:0.19
Consensus pattern (12 bp):
GCCAGGCCGTGT
Found at i:68075855 original size:40 final size:40
Alignment explanation
Indices: 68075796--68076189 Score: 635
Period size: 40 Copynumber: 9.8 Consensus size: 40
68075786 ATTTGAATAC
*
68075796 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
68075836 ATCTGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
68075876 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
*
68075918 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
68075958 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
68076000 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
*
68076040 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
68076080 ATCCGGGCTAAGACCCGGAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
68076120 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
68076160 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
68076190 TTGTGGTTAT
Statistics
Matches: 333, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
40 254 0.76
42 79 0.24
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:68075950 original size:82 final size:81
Alignment explanation
Indices: 68075796--68076189 Score: 659
Period size: 82 Copynumber: 4.9 Consensus size: 81
68075786 ATTTGAATAC
* *
68075796 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-ATATATCTGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCATATATCCGGGCTAAGACCCGAAGGCAT
68075860 TTGTGCAAGTTGATAT
66 TTGTGCAAGTTGATAT
68075876 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CATATATCCGGGCTAAGACCCGAAGGCA
68075941 TTTGTGCAAGTTGATAT
65 TTTGTGCAAGTTGATAT
68075958 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CATATATCCGGGCTAAGACCCGAAGGCA
*
68076023 TTTGTGCGAGTTGATAT
65 TTTGTGCAAGTTGATAT
* * *
68076040 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG-ATATATCCGGGCTAAGACCCGGAGGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCATATATCCGGGCTAAGACCCGAAGGCAT
68076104 TTGTGCAAGTTGATAT
66 TTGTGCAAGTTGATAT
* * * *
68076120 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGC-TATACCCGGGTTAAGACCCGAAGGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCATATATCCGGGCTAAGACCCGAAGGCAT
68076184 TTGTGC
66 TTGTGC
68076190 TTGTGGTTAT
Statistics
Matches: 299, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
80 140 0.47
82 159 0.53
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (81 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCATATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTTGATAT
Found at i:68076040 original size:122 final size:120
Alignment explanation
Indices: 68075796--68076189 Score: 653
Period size: 122 Copynumber: 3.2 Consensus size: 120
68075786 ATTTGAATAC
* *
68075796 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCTGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
68075861 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
66 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
*
68075918 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
*
68075983 TGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
66 TGTGCAAGTTG--ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
68076040 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATCCGGGCTAAGACCCGGAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* *
68076105 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
66 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
68076160 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
68076190 TTGTGGTTAT
Statistics
Matches: 259, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
120 70 0.27
122 149 0.58
124 40 0.15
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (120 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:68096690 original size:16 final size:16
Alignment explanation
Indices: 68096671--68096701 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68096661 CTTCTTCACT
68096671 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
68096687 TACTTACTTACTTAA
1 TACTCACTTACTTAA
68096702 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:68096707 original size:20 final size:20
Alignment explanation
Indices: 68096668--68096707 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
68096658 AAACTTCTTC
* *
68096668 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
68096688 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
68096708 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:68096967 original size:49 final size:52
Alignment explanation
Indices: 68096891--68097039 Score: 178
Period size: 49 Copynumber: 2.9 Consensus size: 52
68096881 ATACGCGGGT
* *
68096891 ACCTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT-TT-GAA
1 ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTCTTAGAA
* * *
68096941 A-CTTACCATTACCATGTCTTGACATGGTCTTACATGGTTTCCTTGCCTTAGAA
1 ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTT--CTTAGAA
* * *
68096994 ACCTCACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCTTACC-ATTGCCATGACTTGACATGGTCTTACATGGTATCCTT
68097040 AAACCCTAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
49 38 0.46
50 1 0.01
52 2 0.02
53 4 0.05
54 5 0.06
55 33 0.40
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (52 bp):
ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTCTTAGAA
Found at i:68099683 original size:40 final size:40
Alignment explanation
Indices: 68099471--68099676 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
68099461 AACCCAAGTA
* *
68099471 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
68099510 CCTTCGGGACTTAGCCCGGATATAATCACTAGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
68099550 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
68099590 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
**
68099630 CCTTCAAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68099670 CCTTCGG
1 CCTTCGG
68099677 ATCTTAGTCC
Statistics
Matches: 151, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.09
40 137 0.91
41 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:68101073 original size:13 final size:13
Alignment explanation
Indices: 68101055--68101080 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68101045 ATTTTTATTT
68101055 TTAACATAAAATA
1 TTAACATAAAATA
68101068 TTAACATAAAATA
1 TTAACATAAAATA
68101081 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:68117429 original size:39 final size:40
Alignment explanation
Indices: 68117329--68117513 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
68117319 TCGAATGATG
* * * *
68117329 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
**
68117368 ATCCGGAATAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
68117409 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
68117448 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
68117487 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
68117514 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:68117536 original size:79 final size:79
Alignment explanation
Indices: 68117382--68117536 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
68117372 GGAATAAGAT
* **
68117382 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
68117447 ATCCGAGTTAAGTC
66 ATCCGAGTTAAGTC
* *
68117461 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
68117524 TACATCCG-GTTAA
63 TAAATCCGAGTTAA
68117537 ATTTCGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAGTC
Found at i:68125483 original size:79 final size:81
Alignment explanation
Indices: 68125347--68125529 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
68125337 TCGAATGATG
* *
68125347 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
68125411 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
68125426 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
68125488 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
68125506 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68125530 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:68125545 original size:40 final size:40
Alignment explanation
Indices: 68125348--68125531 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
68125338 CGAATGATGT
* * * *
68125348 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
68125388 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
68125428 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68125466 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68125507 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
68125532 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:68125553 original size:79 final size:79
Alignment explanation
Indices: 68125400--68125564 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
68125390 GGACTAAGAT
* **
68125400 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
68125465 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
68125479 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
68125542 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
68125558 CCGAAGG
1 CCGAAGG
68125565 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:68128631 original size:40 final size:40
Alignment explanation
Indices: 68128587--68128669 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
68128577 CAAGGTAGAT
68128587 TGTAAAACACTAGAGTTGAAATATGAAAATGGTGAAATTC
1 TGTAAAACACTAGAGTTGAAATATGAAAATGGTGAAATTC
68128627 TGTAAAACACTAGAGTTGAAATATGAAAATGGTGAAATTC
1 TGTAAAACACTAGAGTTGAAATATGAAAATGGTGAAATTC
68128667 TGT
1 TGT
68128670 GGGTTGAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.29
Consensus pattern (40 bp):
TGTAAAACACTAGAGTTGAAATATGAAAATGGTGAAATTC
Found at i:68130488 original size:27 final size:27
Alignment explanation
Indices: 68130448--68130563 Score: 130
Period size: 27 Copynumber: 4.4 Consensus size: 27
68130438 TTTTACTCTC
** * *
68130448 CAGGGGTAAATCGGTAGTCCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
68130475 CAGGGGTATTTCGGTAATTCTACCTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
** *
68130502 CAGAAGTATTTCAGTAATTCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
68130529 CA-GGGTATTTC-GTAATTCTACCTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
68130554 CA-GGGTATTT
1 CAGGGGTATTT
68130564 TAGTAAATTT
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
25 23 0.30
26 7 0.09
27 47 0.61
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTCTACCCTA
Done.