Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 214 of 295
Found at i:68130549 original size:25 final size:26
Alignment explanation
Indices: 68130467--68130569 Score: 136
Period size: 27 Copynumber: 3.9 Consensus size: 26
68130457 ATCGGTAGTC
*
68130467 CTACCCTACAGGGGTATTTCGGTAATT
1 CTACCCTACA-GGGTATTTCAGTAATT
* *
68130494 CTACCTTACAGAAGTATTTCAGTAATT
1 CTACCCTACAG-GGTATTTCAGTAATT
68130521 CTACCCTACAGGGTATTTC-GTAATT
1 CTACCCTACAGGGTATTTCAGTAATT
* *
68130546 CTACCTTACAGGGTATTTTAGTAA
1 CTACCCTACAGGGTATTTCAGTAA
68130570 ATTTGCTAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
25 23 0.34
26 12 0.18
27 32 0.48
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (26 bp):
CTACCCTACAGGGTATTTCAGTAATT
Found at i:68130552 original size:52 final size:53
Alignment explanation
Indices: 68130467--68130569 Score: 165
Period size: 52 Copynumber: 2.0 Consensus size: 53
68130457 ATCGGTAGTC
68130467 CTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGAAGTATTTCAGTAATT
1 CTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAG-AGTATTTCAGTAATT
* *
68130521 CTACCCTACA-GGGTATTTC-GTAATTCTACCTTACAGGGTATTTTAGTAA
1 CTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGAGTATTTCAGTAA
68130570 ATTTGCTAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
51 11 0.23
52 17 0.36
53 9 0.19
54 10 0.21
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (53 bp):
CTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGAGTATTTCAGTAATT
Found at i:68133485 original size:27 final size:27
Alignment explanation
Indices: 68133438--68133562 Score: 119
Period size: 27 Copynumber: 4.7 Consensus size: 27
68133428 ATAGTCATTT
** * *
68133438 TACCCT-CTAGGGGTAAATCGGTAGTCC
1 TACCCTAC-AGGGGTATTTCGGTAATTC
68133465 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* * * * **
68133492 TACCTTACAAGAGTATGTCAATAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
68133519 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* *
68133546 TACCTTAGA-GGGTATTT
1 TACCCTACAGGGGTATTT
68133563 TATTAATTTT
Statistics
Matches: 79, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
26 8 0.10
27 70 0.89
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATTC
Found at i:68136068 original size:27 final size:27
Alignment explanation
Indices: 68136028--68136146 Score: 121
Period size: 27 Copynumber: 4.4 Consensus size: 27
68136018 TTTTACTCTC
** * *
68136028 CAGGGGTAAATCGGTAGTCCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
68136055 CAGGGGTATTTCGGTAATTCTACCTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
* * * **
68136082 CAAGAGTATGTCAATAATTCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
* *
68136109 CAGGGGTATTTCGGTAATTCTAACTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
68136136 GAGGGGTATTT
1 CAGGGGTATTT
68136147 TATTAATTTT
Statistics
Matches: 73, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTCTACCCTA
Found at i:68138505 original size:40 final size:40
Alignment explanation
Indices: 68138375--68138583 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
68138365 TCTTCGGAAT
** * *
68138375 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
68138413 TTAG-CCGGATATGGTCACTAGCATAAATGCCTTC-GGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
68138451 TTAGCTCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
68138491 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
68138531 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
68138571 TTAGCCCGGATAT
1 TTAGCCCGGATAT
68138584 CATTCGAATA
Statistics
Matches: 143, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
38 26 0.18
39 35 0.24
40 81 0.57
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:68138553 original size:80 final size:79
Alignment explanation
Indices: 68138366--68138583 Score: 266
Period size: 80 Copynumber: 2.8 Consensus size: 79
68138356 ACCCAAGCAT
** * * *
68138366 CTTCGGAAT-TTAGCCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAG-CCGGATATGGT
1 CTTCGG-ATCTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
*
68138428 CACTAGCATAAATGC
65 CACTAGCACAAATGC
* *
68138443 CTTCGGA-CTTAGCTCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG-
1 CTTCGGATCTTAGC-CGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
*
68138506 CAACTCGCACAAATGC
65 C-ACTAGCACAAATGC
* *
68138522 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAG-CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
68138584 CATTCGAATA
Statistics
Matches: 122, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
76 6 0.05
77 21 0.17
78 18 0.15
79 28 0.23
80 48 0.39
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:68141857 original size:27 final size:26
Alignment explanation
Indices: 68141809--68141860 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
68141799 GCGAGGCTGC
*
68141809 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
68141835 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
68141861 TTACAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:68141874 original size:67 final size:68
Alignment explanation
Indices: 68141740--68141879 Score: 192
Period size: 67 Copynumber: 2.1 Consensus size: 68
68141730 TAACCAGATA
* * * *
68141740 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGGCAAAGCCACCAGATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAACAGA-ATATATATGGCAAAGCCACCAGATTACAGCGAGG
68141805 CTGC
65 CTGC
* * * *
68141809 CAGATATTGTGACGAAGTCACCAGAACAG-ATATATGTGGCGAGGCCACCAGATTACAGCGAGGC
1 CAGATATTGTGACGAAGCCACCAGAACAGAATATATATGGCAAAGCCACCAGATTACAGCGAGGC
68141873 TGC
66 TGC
68141876 CAGA
1 CAGA
68141880 ACGCTTCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 38 0.60
69 25 0.40
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (68 bp):
CAGATATTGTGACGAAGCCACCAGAACAGAATATATATGGCAAAGCCACCAGATTACAGCGAGGC
TGC
Found at i:68142150 original size:27 final size:27
Alignment explanation
Indices: 68142110--68142220 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 27
68142100 TTTTACTCTC
** * *
68142110 CAGGGGTAAATCGGTAGTCCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
68142137 CAGGGGTATTTCGGTAATTCTACCTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
* *
68142164 CAGGAGTATTTCAGTAATT-TACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
68142190 CAGGGGTATTTCGGTAATTCTACCTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
68142217 CAGG
1 CAGG
68142221 TATTTTAGTA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 23 0.32
27 49 0.68
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTCTACCCTA
Found at i:68142193 original size:26 final size:27
Alignment explanation
Indices: 68142129--68142233 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
68142119 ATCGGTAGTC
*
68142129 CTACCCTACAGGGGTATTTCGGTAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
* *
68142156 CTACCTTACAGGAGTATTTCAGTAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
*
68142183 -TACCCTACAGGGGTATTTCGGTAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
* *
68142209 CTACCTTACA--GGTATTTTAGTAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
68142234 TTTCTAATTG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
25 13 0.19
26 23 0.34
27 32 0.47
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
CTACCCTACAGGGGTATTTCAGTAATT
Found at i:68142210 original size:53 final size:51
Alignment explanation
Indices: 68142130--68142234 Score: 183
Period size: 53 Copynumber: 2.0 Consensus size: 51
68142120 TCGGTAGTCC
68142130 TACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATT
1 TACCCTACAGGGGTATTTCGGTAATTCTACCTTACA-G-GTATTTCAGTAATT
*
68142183 TACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGTATTTTAGTAATT
1 TACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGTATTTCAGTAATT
68142234 T
1 T
68142235 TTCTAATTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 14 0.27
52 1 0.02
53 36 0.71
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (51 bp):
TACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGTATTTCAGTAATT
Found at i:68144086 original size:42 final size:42
Alignment explanation
Indices: 68144039--68144130 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
68144029 TGGCCCTTAG
* ** *
68144039 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
68144081 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
68144123 GCCCATTT
1 GCCCATTT
68144131 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:68144328 original size:24 final size:25
Alignment explanation
Indices: 68144278--68144346 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
68144268 CTCTTTTAAT
68144278 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGC-AAGCCCTTTTCTGATA
*
68144303 AACTGGGGCAAGCCCTTTTC-GGTA
1 AACTGGGGCAAGCCCTTTTCTGATA
*
68144327 AACTGAGGCAGAGCCCTTTT
1 AACTGGGGCA-AGCCCTTTT
68144347 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.45
25 22 0.55
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAGCCCTTTTCTGATA
Found at i:68145214 original size:27 final size:27
Alignment explanation
Indices: 68145153--68145217 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
68145143 GGCGTATTCA
*
68145153 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCTTACAAGGGTATTACGG
* *
68145180 TCACTTTACCTTACAGGGGCT-TTACGG
1 TCATTTTACCTTACAAGGG-TATTACGG
*
68145207 TCTTTTTACCT
1 TCATTTTACCT
68145218 ATTAGGGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (27 bp):
TCATTTTACCTTACAAGGGTATTACGG
Found at i:68145372 original size:27 final size:27
Alignment explanation
Indices: 68145246--68145577 Score: 156
Period size: 27 Copynumber: 12.3 Consensus size: 27
68145236 TTTCATCCTA
* * * *
68145246 CAAGGGTGTTTTGGTAAATCTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** * *
68145273 CAAGGGTATTTCAATAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * *
68145300 CAATGGTATTCCT-ATAATTTTAAAAAAGT
1 CAAGGGTATT-TTGGTAATTTT-ATAAA-T
*
68145329 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
*
68145356 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * * * *
68145383 TGAGGGTATTTCGATAATTTCA-AAAA
1 CAAGGGTATTTTGGTAATTTTATAAAT
* **
68145409 CCAGTGGTATTTTGGTAATTTTACGAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* *
68145436 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* * *
68145464 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ** * *
68145490 CTAGGGGTATTTCAGTAATTTCA-CAAT
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* ***
68145517 CGAGGGTAAAATGGTAATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
** ***
68145543 CTGGGGTAAAATGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
68145570 CGAGGGTA
1 CAAGGGTA
68145578 AAACGATAAT
Statistics
Matches: 238, Mismatches: 54, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
26 45 0.19
27 167 0.70
28 9 0.04
29 17 0.07
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:68145418 original size:54 final size:54
Alignment explanation
Indices: 68145359--68145512 Score: 195
Period size: 54 Copynumber: 2.9 Consensus size: 54
68145349 TGTAAATCAA
*
68145359 GGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGATAATTTCAAAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGATAATTTCAAAAACCAG
* * * * * * **
68145413 TGGTATTTTGGTAATTTTACGAACTAGGGGTATTTTGGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCAAAAACCAG
68145467 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTC-AGTAATTTCA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGA-TAATTTCA
68145513 CAATCGAGGG
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
54 82 0.98
55 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCAAAAACCAG
Found at i:68145449 original size:81 final size:81
Alignment explanation
Indices: 68145359--68145510 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
68145349 TGTAAATCAA
* **
68145359 GGGTATTTTGGTAATTTTACAAATT-GAGGGTATTTCGATAATTTCAAAAACCAGTGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAATTAG-GGGTATTTCGATAATTTCAAAAACCAGGGGTATTTCA
68145423 GTAATTTTACGAACTAG
65 GTAATTTTACGAACTAG
* * * * *
68145440 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAG
1 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCGATAATTTCAAAAACCAGGGGTATTTCAG
68145505 TAATTT
66 TAATTT
68145511 CACAATCGAG
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 61 0.98
82 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCGATAATTTCAAAAACCAGGGGTATTTCAG
TAATTTTACGAACTAG
Found at i:68145587 original size:27 final size:27
Alignment explanation
Indices: 68145514--68145762 Score: 290
Period size: 27 Copynumber: 9.3 Consensus size: 27
68145504 GTAATTTCAC
*
68145514 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
68145541 AA-CTG-GGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* * *
68145567 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
** ** *
68145594 TTTCGAGGGTAAAACAGAAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
68145621 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* ***
68145648 AATCGGGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
68145675 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
68145702 AATC-AGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
68145728 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
68145755 AAT-GAGGG
1 AATCGAGGG
68145763 CATTTCAGTA
Statistics
Matches: 189, Mismatches: 29, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
26 55 0.29
27 134 0.71
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:68145641 original size:107 final size:107
Alignment explanation
Indices: 68145514--68145757 Score: 310
Period size: 107 Copynumber: 2.3 Consensus size: 107
68145504 GTAATTTCAC
* *** *
68145514 AATCGAGGGTAAAATGGTAATTTTATAAA-CTGGGGTAAAATGGTAATTTTATAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGGGGGTAAAACAATAATTCTATAAATCGAGGGTA
* **
68145578 AAACGATAATTCTGTATTTCGAGGGTAAAACAGAAATTCTATA
66 AAACGATAATTCTATAAATC-AGGGTAAAACAGAAATTCTATA
* * *
68145621 AATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAAACAATAATTCTATAAATTGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGGGGGTAAAACAATAATTCTATAAATCGAGGGTA
* * ** * *
68145686 AAATGGTAATTCTATAAATCAGGGTAAAATGGTAATTTTATA
66 AAACGATAATTCTATAAATCAGGGTAAAACAGAAATTCTATA
*
68145728 AATCGAGGGTAAAACGGTAATTTTATAAAT
1 AATCGAGGGTAAAATGGTAATTTTATAAAT
68145758 GAGGGCATTT
Statistics
Matches: 116, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
107 72 0.62
108 44 0.38
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (107 bp):
AATCGAGGGTAAAATGGTAATTTTATAAATCGGGGGTAAAACAATAATTCTATAAATCGAGGGTA
AAACGATAATTCTATAAATCAGGGTAAAACAGAAATTCTATA
Found at i:68145650 original size:81 final size:82
Alignment explanation
Indices: 68145516--68145757 Score: 332
Period size: 80 Copynumber: 3.0 Consensus size: 82
68145506 AATTTCACAA
*
68145516 TCGAGGGTAAAATGGTAATTTTATAAA-CTG-GGGTAAAATGGTAATTTTATAAATCGAGGGTAA
1 TCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTATAAATCGAGGGTAA
* *
68145579 AACGATAATTCTGT-ATT
65 AACGATAATTCTATAAAT
** * * * *
68145596 TCGAGGGTAAAACAGAAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAA
1 TCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAA
*
68145661 ACAATAATTCTATAAAT
66 ACGATAATTCTATAAAT
68145678 T-GAGGGTAAAATGGTAATTCTATAAATC-AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAA
1 TCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAA
* *
68145741 ACGGTAATTTTATAAAT
66 ACGATAATTCTATAAAT
68145758 GAGGGCATTT
Statistics
Matches: 140, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
80 70 0.50
81 67 0.48
82 3 0.02
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.31
Consensus pattern (82 bp):
TCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAA
ACGATAATTCTATAAAT
Found at i:68165709 original size:47 final size:47
Alignment explanation
Indices: 68165646--68166157 Score: 728
Period size: 47 Copynumber: 10.7 Consensus size: 47
68165636 CCCTTCGGGA
* * *
68165646 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
68165693 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
68165740 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
68165787 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* **
68165834 CTTATCACACATACCCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
68165881 CTTATCTCATATATGCA-TGTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
68165928 CTTATCACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
68165975 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68166024 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68166073 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
*
68166122 CTTATCACATATATACACTTTCACATTTATTCACAT
1 CTTATCACATATATACACTTTCACATTCA-TCACAT
68166158 ATACTTCACA
Statistics
Matches: 438, Mismatches: 20, Indels: 13
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 291 0.66
48 6 0.01
49 139 0.32
50 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:68165866 original size:25 final size:25
Alignment explanation
Indices: 68165790--68165867 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
68165780 ATTCGGCCTT
*
68165790 ATCACACATACACATGTTCACATTC
1 ATCACACATACCCATGTTCACATTC
* ** * *
68165815 ATCACA-TTGGCCA--TTCGGCCTT-
1 ATCACACATACCCATGTTC-ACATTC
68165837 ATCACACATACCCATGTTCACATTC
1 ATCACACATACCCATGTTCACATTC
68165862 ATCACA
1 ATCACA
68165868 TTGGCCATTC
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 9 0.24
23 7 0.19
24 6 0.16
25 15 0.41
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.28
Consensus pattern (25 bp):
ATCACACATACCCATGTTCACATTC
Found at i:68167539 original size:84 final size:85
Alignment explanation
Indices: 68167413--68167590 Score: 340
Period size: 84 Copynumber: 2.1 Consensus size: 85
68167403 TATTTTATTG
*
68167413 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATG-TTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
68167477 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
68167497 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
68167562 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
68167582 CCCATGCTC
1 CCCATGCTC
68167591 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 60 0.65
85 32 0.35
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:68176218 original size:39 final size:39
Alignment explanation
Indices: 68176044--68176201 Score: 253
Period size: 39 Copynumber: 4.1 Consensus size: 39
68176034 TGTGAATATA
* * *
68176044 TATACGCGAGAATTATATCTGGACTTCAGGTCCGCAGGA
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
68176083 TATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
68176122 TATATGCGAGAATTATATCCGGACTTCATGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
68176161 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
68176200 TA
1 TA
68176202 CGTGCTGGAC
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:68179159 original size:48 final size:48
Alignment explanation
Indices: 68179088--68179193 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
68179078 CAAGATAAAT
* * *
68179088 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
68179136 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
68179184 ATGTGTATAT
1 ATATGTATAT
68179194 ATTGTGGCCG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:68179377 original size:37 final size:37
Alignment explanation
Indices: 68179327--68179398 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
68179317 GAAATATATT
*
68179327 CCGGGTAAGACCCGATGGCTACGTGTGGAGATTATGC
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
*
68179364 CCGGGTAAGACCCGATGACTACGTGTGGGGATTAT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
68179399 TTGAGCTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
Found at i:68183611 original size:49 final size:49
Alignment explanation
Indices: 68183503--68183890 Score: 612
Period size: 49 Copynumber: 8.1 Consensus size: 49
68183493 GAAATGATAG
*
68183503 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
68183550 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
68183599 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
68183648 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
68183697 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
68183746 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
68183793 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
68183840 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
68183887 TAAG
1 TAAG
68183891 TCCCGAAGGG
Statistics
Matches: 318, Mismatches: 17, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
45 1 0.00
47 123 0.39
48 1 0.00
49 193 0.61
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:68184067 original size:37 final size:37
Alignment explanation
Indices: 68184009--68184087 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
68183999 CCGAGCTCTA
* * * *
68184009 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
*
68184046 AAGACCCGATAACTTCATGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
68184083 AAGAC
1 AAGAC
68184088 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:68190058 original size:79 final size:78
Alignment explanation
Indices: 68189947--68190171 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 78
68189937 GCTACTCGTT
* * *
68189947 CAAATGCTTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAA-TGCCTTCGGGACTTAACCCGG
68190012 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* *
68190027 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
68190091 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * * * * * *
68190106 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAACCCGG
68190171 A
64 A
68190172 CATCATTCAA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 69 0.55
80 50 0.40
81 6 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:68190131 original size:119 final size:120
Alignment explanation
Indices: 68189947--68190171 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
68189937 GCTACTCGTT
* * * *
68189947 CAAATGCTTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
68190012 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* **
68190066 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAACCC-GATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
68190129 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
68190172 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 3 0.03
119 66 0.73
120 22 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:68190171 original size:40 final size:40
Alignment explanation
Indices: 68189928--68190171 Score: 273
Period size: 40 Copynumber: 6.1 Consensus size: 40
68189918 CAGAATTTAA
** * *
68189928 CCGGATATAGCT-ACTCGTTCAAATGCTTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
68189968 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
68190008 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68190047 CCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
68190087 CCAGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
68190127 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
68190167 CCGGA
1 CCGGA
68190172 CATCATTCAA
Statistics
Matches: 172, Mismatches: 25, Indels: 14
0.82 0.12 0.07
Matches are distributed among these distances:
39 39 0.23
40 122 0.71
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:68194710 original size:40 final size:40
Alignment explanation
Indices: 68194655--68194872 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
68194645 CGGATGATAA
* *
68194655 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68194695 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68194735 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
68194775 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
68194815 CCGGGCTAAGTCCCGAAGGCATTTGAGCG-GGTAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
68194855 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68194873 TACTTGGTTT
Statistics
Matches: 169, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 18 0.11
40 151 0.89
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68199797 original size:22 final size:22
Alignment explanation
Indices: 68199772--68199816 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
68199762 AATTGTACAA
68199772 AAATTATTATGGGTTATAATTT
1 AAATTATTATGGGTTATAATTT
68199794 AAATTATTATGGGTTATAATTT
1 AAATTATTATGGGTTATAATTT
68199816 A
1 A
68199817 TATGCTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (22 bp):
AAATTATTATGGGTTATAATTT
Found at i:68201293 original size:33 final size:33
Alignment explanation
Indices: 68201233--68201298 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
68201223 GCATGCAGTA
* * * *
68201233 ACAGTCTGGGCCTAGGCCTTATTCAATATTAGT
1 ACAGCCTGGGCCTAGGCCCTATACAATAATAGT
68201266 ACAGCCTGGGCCTTA-GCCCTATACAATAATAGT
1 ACAGCCTGGGCC-TAGGCCCTATACAATAATAGT
68201299 GTGGGCCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (33 bp):
ACAGCCTGGGCCTAGGCCCTATACAATAATAGT
Found at i:68205883 original size:15 final size:15
Alignment explanation
Indices: 68205840--68205884 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
68205830 GGTATTGTAA
**
68205840 CTTGGATTTCTGAAT
1 CTTGGATTTCTTTAT
68205855 CTTGGGAGTTTCTTTAT
1 CTT-GGA-TTTCTTTAT
68205872 CTTGGATTTCTTT
1 CTTGGATTTCTTT
68205885 GTCTCAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 10 0.38
16 6 0.23
17 10 0.38
ACGTcount: A:0.13, C:0.13, G:0.20, T:0.53
Consensus pattern (15 bp):
CTTGGATTTCTTTAT
Found at i:68217435 original size:47 final size:45
Alignment explanation
Indices: 68217382--68217504 Score: 140
Period size: 47 Copynumber: 2.7 Consensus size: 45
68217372 TGTGGCCATG
68217382 ACATGTGATAAGGCCGAATGGCCAATGTGATGA-ATGTGGAAGTGCA
1 ACATGTGATAAGGCCGAATGGCCAATGTGAT-ATATGTGGAAGTG-A
* ** * *
68217428 TACATGTGATAAGGCCGGATGGTTAATGTGATATATGTGTACGTGA
1 -ACATGTGATAAGGCCGAATGGCCAATGTGATATATGTGGAAGTGA
* *
68217474 ATATGTGATAAGGCCGAATGACCAATTGTGA
1 ACATGTGATAAGGCCGAATGGCCAA-TGTGA
68217505 AAAGTGTGCA
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 20 0.31
46 7 0.11
47 37 0.58
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (45 bp):
ACATGTGATAAGGCCGAATGGCCAATGTGATATATGTGGAAGTGA
Found at i:68220061 original size:40 final size:40
Alignment explanation
Indices: 68219961--68220235 Score: 448
Period size: 40 Copynumber: 7.0 Consensus size: 40
68219951 TGAGAGTTAG
*
68219961 ATATCCGGGCTAAGTATCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTT
*
68220001 ATAT-C-GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTT
*
68220039 ATATCCGGGCTAAGTCTCGAAGAGCATTCCTGCTGGTGTT
1 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTT
* *
68220079 ATATCCGGGCTAAGTCTCGAATAGCATTCCTGCTGGTGTT
1 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTT
68220119 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTT
*
68220159 ATAT-CAGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTT
* * *
68220198 ATATCTGGGCTAGGTCTCGAAGAGCATTCATGCTGGTG
1 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTG
68220236 ATGTGTATTC
Statistics
Matches: 220, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 35 0.16
39 40 0.18
40 145 0.66
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTT
Found at i:68224002 original size:47 final size:45
Alignment explanation
Indices: 68223949--68224069 Score: 136
Period size: 47 Copynumber: 2.6 Consensus size: 45
68223939 TGGCCATGAT
68223949 ATGTGATAAGGCCGAATGGCCAATGTGATGA-ATGTGGAAGTGCATAC
1 ATGTGATAAGGCCGAATGGCCAATGTGAT-ATATGTGGAAGTG-A-AC
* ** * * *
68223996 ATGTGATAAGGCCGGATGGTTAATGTGATATATGTGTACGTGAAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATATATGTGGAAGTGAAC
*
68224041 ATGTGATAAGGCCGAATGACCAATTGTGA
1 ATGTGATAAGGCCGAATGGCCAA-TGTGA
68224070 AAAGTGTGCA
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 20 0.32
46 7 0.11
47 35 0.56
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (45 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATATATGTGGAAGTGAAC
Found at i:68224205 original size:39 final size:40
Alignment explanation
Indices: 68224146--68224230 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
68224136 AAATGAATTG
* * * * *
68224146 TGCTGAGATTGTATCTGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
*
68224185 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
68224225 TGCTGG
1 TGCTGG
68224231 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.20, G:0.32, T:0.31
Consensus pattern (40 bp):
TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:68225320 original size:37 final size:37
Alignment explanation
Indices: 68225262--68225364 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
68225252 CGAATAGTCC
* *
68225262 CCACACGTAGTTATCGAGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
68225299 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
68225336 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
68225365 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:68225563 original size:48 final size:48
Alignment explanation
Indices: 68225505--68225704 Score: 373
Period size: 48 Copynumber: 4.2 Consensus size: 48
68225495 ATATACACAC
*
68225505 ATCTCCTACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
*
68225553 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
68225601 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
*
68225649 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
68225697 ATCTCATA
1 ATCTCATA
68225705 TGTGAAAATC
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 148 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
Found at i:68225737 original size:111 final size:111
Alignment explanation
Indices: 68225601--68225815 Score: 403
Period size: 111 Copynumber: 1.9 Consensus size: 111
68225591 ACATATACAT
*
68225601 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
68225666 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATGTGAAA
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATGTGAAA
*
68225712 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
68225777 CACTAGCCATTCGGCTTTACCACATATACATATCTCATA
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATA
68225816 CATATTTCAC
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
111 101 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (111 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATATGTGAAA
Found at i:68225783 original size:48 final size:48
Alignment explanation
Indices: 68225712--68225975 Score: 474
Period size: 48 Copynumber: 5.5 Consensus size: 48
68225702 ATATGTGAAA
68225712 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
68225760 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
68225808 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
68225856 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
68225904 ATCTCATACATATTTCACACCAGCCGTTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
68225952 ATCTCATACATATTTCACACTAGC
1 ATCTCATACATATTTCACACTAGC
68225976 TTATAAGCAA
Statistics
Matches: 206, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 206 1.00
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:68225866 original size:207 final size:207
Alignment explanation
Indices: 68225505--68225911 Score: 769
Period size: 207 Copynumber: 2.0 Consensus size: 207
68225495 ATATACACAC
* *
68225505 ATCTCCTACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
68225570 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTT
* *
68225635 TACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
131 TACCACATATACATATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACATATC
68225700 TCATATGTGAAA
196 TCATATGTGAAA
*
68225712 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
68225777 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTT
68225842 TACCACATATACATATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACATATC
131 TACCACATATACATATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACATATC
68225907 TCATA
196 TCATA
68225912 CATATTTCAC
Statistics
Matches: 195, Mismatches: 5, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
207 195 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (207 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTT
TACCACATATACATATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACATATC
TCATATGTGAAA
Found at i:68227489 original size:24 final size:24
Alignment explanation
Indices: 68227448--68227493 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
68227438 TCCATAGCTA
68227448 CAATGACCGAAAGATCTAGACATCT
1 CAATGACCGAAAGATCTA-ACATCT
**
68227473 CAAT-ACCGAAATTTCTAACAT
1 CAATGACCGAAAGATCTAACAT
68227494 GGGTTGCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 11 0.58
25 4 0.21
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (24 bp):
CAATGACCGAAAGATCTAACATCT
Found at i:68229357 original size:40 final size:40
Alignment explanation
Indices: 68229311--68229622 Score: 491
Period size: 40 Copynumber: 7.8 Consensus size: 40
68229301 GAATGCACAT
* * *
68229311 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
68229351 CACCAGCACGAATGCTCTTAGGGACTTAGCCC-GATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
68229390 CACCAACACGAATGCTCTTCGGGAATTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
68229430 CACCAGCACGGATGCTCTTCGAGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
68229470 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
68229510 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
68229550 CATCAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
68229590 CATCAGCACGAATGCTCTTCGGGACTTAGCCCG
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCG
68229623 ACTATATAAC
Statistics
Matches: 253, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
39 36 0.14
40 217 0.86
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:68230976 original size:37 final size:37
Alignment explanation
Indices: 68230904--68231004 Score: 143
Period size: 36 Copynumber: 2.8 Consensus size: 37
68230894 CGAATAGTCC
* *
68230904 CCACACGTAGTTATCGGTTCTTA-CCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
68230940 CTACACATAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
68230977 CCACACGTAGTCATC-GGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
68231005 ATATATTTCC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
36 32 0.56
37 25 0.44
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:68231202 original size:48 final size:48
Alignment explanation
Indices: 68231144--68231646 Score: 918
Period size: 48 Copynumber: 10.5 Consensus size: 48
68231134 ATATACACAC
* * *
68231144 ATCTCCTACATATTTAACACCAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
68231192 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
68231240 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
68231288 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACGACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
68231336 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
68231384 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
68231432 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
68231480 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
68231528 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
68231576 AT-TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
68231623 ATCTCATACATATTTCACACTAGC
1 ATCTCATACATATTTCACACTAGC
68231647 TTATAAGCAA
Statistics
Matches: 440, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
47 46 0.10
48 394 0.90
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:68242624 original size:17 final size:17
Alignment explanation
Indices: 68242604--68242636 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
68242594 ACCTTATTAC
68242604 ATAAAATTTTACCCCAA
1 ATAAAATTTTACCCCAA
68242621 ATAAAATTTTACCCCA
1 ATAAAATTTTACCCCA
68242637 TCTCCGATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (17 bp):
ATAAAATTTTACCCCAA
Found at i:68245956 original size:23 final size:22
Alignment explanation
Indices: 68245930--68245978 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
68245920 CATACAGAGA
*
68245930 TCCAATCCAACCATCCTCTACAC
1 TCCAATCCAACCAGCC-CTACAC
* **
68245953 TCCACTCCGCCCAGCCCTACAC
1 TCCAATCCAACCAGCCCTACAC
68245975 TCCA
1 TCCA
68245979 TGTATGGATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.24, C:0.53, G:0.04, T:0.18
Consensus pattern (22 bp):
TCCAATCCAACCAGCCCTACAC
Found at i:68251724 original size:43 final size:43
Alignment explanation
Indices: 68251659--68251788 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 43
68251649 AGCTAGTACA
* * *
68251659 ATGCC-ATATCCCAGATATGGTCTTACATGTTATAACATATCG
1 ATGCCAATGTCCCAGATATGGTCTTACATGTAATCACATATCG
* * * * * * *
68251701 ATGCCACTGTCCTAGATAGGGTCTTACACGAAATCATATAACG
1 ATGCCAATGTCCCAGATATGGTCTTACATGTAATCACATATCG
* *
68251744 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGATATGGTCTTACATGTAATCACATATCG
68251787 AT
1 AT
68251789 AACCTAATGT
Statistics
Matches: 68, Mismatches: 19, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
42 5 0.07
43 63 0.93
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGATATGGTCTTACATGTAATCACATATCG
Found at i:68253827 original size:13 final size:13
Alignment explanation
Indices: 68253809--68253833 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68253799 TAATGGTATA
68253809 TTGAATCCATGAC
1 TTGAATCCATGAC
68253822 TTGAATCCATGA
1 TTGAATCCATGA
68253834 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:68254416 original size:27 final size:27
Alignment explanation
Indices: 68254381--68254559 Score: 182
Period size: 27 Copynumber: 6.6 Consensus size: 27
68254371 TTAAATTGTA
68254381 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
68254408 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
68254435 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** * *
68254462 CGGCATTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
68254490 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
68254517 TAGCACTAAGTGTGCGAGATGATTATA
1 TAGCACTAAGTGTGCGATATGACTATG
*
68254544 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
68254560 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 105 0.83
28 21 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:68254556 original size:82 final size:81
Alignment explanation
Indices: 68254379--68254559 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
68254369 GATTAAATTG
* *
68254379 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68254444 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * * ** *
68254460 TGCGGCATTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
**
68254524 AAGTGTGCGAGA-TGATTA
64 AAGTGTGCGA-ATTGACCA
*
68254542 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
68254560 GGCTCAATAT
Statistics
Matches: 80, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
81 16 0.20
82 63 0.79
83 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68259140 original size:40 final size:40
Alignment explanation
Indices: 68259092--68259297 Score: 326
Period size: 40 Copynumber: 5.2 Consensus size: 40
68259082 GGACTAAGAT
*
68259092 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
68259132 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
68259172 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
68259212 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
68259252 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
68259291 CCGAAGG
1 CCGAAGG
68259298 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.09
40 142 0.90
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:68263270 original size:28 final size:28
Alignment explanation
Indices: 68263230--68263332 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
68263220 ATTGCATGAG
* * *
68263230 TATGAATGTGATTGGGCCTGACGAGCCA
1 TATGAATGAGATTGGGCCTGATGGGCCA
* * *
68263258 TATGAAAGTGATTGGGCCTGATGGGTCA
1 TATGAATGAGATTGGGCCTGATGGGCCA
*
68263286 TATGAATGAGATTGGGCCCGATGGGCCA
1 TATGAATGAGATTGGGCCTGATGGGCCA
68263314 TATGAATGAGATTGGGCCT
1 TATGAATGAGATTGGGCCT
68263333 AAAGGGGCCA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.26
Consensus pattern (28 bp):
TATGAATGAGATTGGGCCTGATGGGCCA
Found at i:68266689 original size:23 final size:20
Alignment explanation
Indices: 68266662--68266718 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 20
68266652 GAGTTCATAA
68266662 AAATAAAAATAAAATAGATAAG
1 AAATAAAAATAAAATAG--AAG
*
68266684 AGAATAAAAATTAAA-AGAAG
1 A-AATAAAAATAAAATAGAAG
68266704 AAATAAAAA-AAAATA
1 AAATAAAAATAAAATA
68266719 CTAGTTACCC
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
18 3 0.10
19 9 0.29
20 4 0.13
22 3 0.10
23 12 0.39
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (20 bp):
AAATAAAAATAAAATAGAAG
Found at i:68268557 original size:29 final size:29
Alignment explanation
Indices: 68268515--68268572 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
68268505 TAATATATGA
68268515 ATATTTTATTTTTAGTTCGAAAATAACAC
1 ATATTTTATTTTTAGTTCGAAAATAACAC
68268544 ATATTTTATTTTTAGTTCGAAAATAACAC
1 ATATTTTATTTTTAGTTCGAAAATAACAC
68268573 CAACTCCCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (29 bp):
ATATTTTATTTTTAGTTCGAAAATAACAC
Found at i:68271517 original size:25 final size:26
Alignment explanation
Indices: 68271488--68271567 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
68271478 CCCCACATAT
68271488 ATACTGATACTGGCAGCTTTG-TGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
*
68271513 ATACTGCTACTGGCAGCTTTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
* * *
68271539 TTACTGATACTAGCAGCTTTGTTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
68271565 ATA
1 ATA
68271568 TTGGTGTGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 20 0.42
26 28 0.58
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTGCG
Found at i:68279833 original size:43 final size:43
Alignment explanation
Indices: 68279786--68280194 Score: 356
Period size: 43 Copynumber: 9.6 Consensus size: 43
68279776 TCCTTGATGT
* * ** *
68279786 GGTCTTACATGTAATCTCATATCGATGCCATTGTCCCAAAAAG
1 GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAAACG
* * * * * * *
68279829 GGTCTTACTCTTAAACACATATCAATGCCAACGTCCCAGACCT
1 GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAAACG
*
68279872 GGTCTTACACGTAATCACATATCGATGCCAACGTCCC-AGACG
1 GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAAACG
* *
68279914 TCGTCTTACACGTAATCACATATCGATGCCAACGTCCC-AGACG
1 -GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAAACG
* * *
68279957 TGGTCTTACACGTAATCACATATCAATCCCAACGTCCC-AAACAT
1 -GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAAAC-G
* * * * * *
68280001 GGTCTTACACGTAATTAAATATAGATGCCAACATCCC-AGACAT
1 GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAAAC-G
** * *
68280044 GGTCTTATGCGTAATCACATATCGATG-C--C--CCC-AGACAT
1 GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAAAC-G
* *
68280082 GGTCTTACACGTAATCACATATCGATGCCAACGT-CCTAGACG
1 GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAAACG
** * *
68280124 TGGTCTTACACGTAATCACATATCGATGCCAATAT-CCTACACG
1 -GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAAACG
*
68280167 TGGTCTTACACGTAATCACATATTGATG
1 -GGTCTTACACGTAATCACATATCGATG
68280195 TCTCATATAC
Statistics
Matches: 312, Mismatches: 45, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
38 34 0.11
39 1 0.00
40 1 0.00
41 1 0.00
42 4 0.01
43 271 0.87
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAAACG
Found at i:68279920 original size:86 final size:86
Alignment explanation
Indices: 68279765--68280189 Score: 493
Period size: 86 Copynumber: 5.0 Consensus size: 86
68279755 ATATTTTGTA
* ** * * * ** * *
68279765 CAATGCCAACTTCCTTGATGTGGTCTTACATGTAATCTCATATCGATGCCATTGTCCCAAAAAGG
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATG
* * *
68279830 GTCTTACTCTTAAACACATAT
66 GTCTTACACGTAATCACATAT
* * * *
68279851 CAATGCCAACGTCCCAGACCTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTC
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATG
68279916 GTCTTACACGTAATCACATAT
66 GTCTTACACGTAATCACATAT
* * *
68279937 CGATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCAATCCCAACGTCCCAAACATG
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATG
* *
68280002 GTCTTACACGTAATTAAATAT
66 GTCTTACACGTAATCACATAT
* * ** *
68280023 -AGATGCCAACATCCCAGACATGGTCTTATGCGTAATCACATATCGATG-C--C--CCCAGACAT
1 CA-ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACAT
68280082 GGTCTTACACGTAATCACATAT
65 GGTCTTACACGTAATCACATAT
* * ** * * *
68280104 CGATGCCAACGTCCTAGACGTGGTCTTACACGTAATCACATATCGATGCCAATATCCTACACGTG
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATG
68280169 GTCTTACACGTAATCACATAT
66 GTCTTACACGTAATCACATAT
68280190 TGATGTCTCA
Statistics
Matches: 286, Mismatches: 46, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
81 69 0.24
82 1 0.00
83 1 0.00
85 1 0.00
86 214 0.75
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (86 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATG
GTCTTACACGTAATCACATAT
Found at i:68280004 original size:129 final size:128
Alignment explanation
Indices: 68279784--68280194 Score: 517
Period size: 129 Copynumber: 3.2 Consensus size: 128
68279774 CTTCCTTGAT
* * * * * * * *
68279784 GTGGTCTTACATGTAATCTCATATCGATGCCATTGTCCCAAAAAG-GGTCTTACTCTTAAACACA
1 GTGGTCTTACACGTAATCACATATCGATGCCA-CGTCCC-AGACGTGGTCTTACACGTAATCACA
* *
68279848 TATCAATGCCAACGTCCCAGACCTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
64 TATCAATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACATCCCAGAC
*
68279913 GTCGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACAT
1 GTGGTCTTACACGTAATCACATATCGATGCC-ACGTCCCAGACGTGGTCTTACACGTAATCACAT
* * * * *
68279978 ATCAATCCCAACGTCCCAAACATGGTCTTACACGTAATTAAATATAGATGCCAACATCCCAGAC
65 ATCAATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACATCCCAGAC
* ** *
68280042 ATGGTCTTATGCGTAATCACATATCGATG-C-C--CCCAGACATGGTCTTACACGTAATCACATA
1 GTGGTCTTACACGTAATCACATATCGATGCCACGTCCCAGACGTGGTCTTACACGTAATCACATA
* * * * * *
68280103 TCGATGCCAACGTCCTAGACGTGGTCTTACACGTAATCACATATCGATGCCAATATCCTACAC
66 TCAATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACATCCCAGAC
*
68280166 GTGGTCTTACACGTAATCACATATTGATG
1 GTGGTCTTACACGTAATCACATATCGATG
68280195 TCTCATATAC
Statistics
Matches: 244, Mismatches: 36, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
124 106 0.43
126 1 0.00
128 4 0.02
129 132 0.54
130 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (128 bp):
GTGGTCTTACACGTAATCACATATCGATGCCACGTCCCAGACGTGGTCTTACACGTAATCACATA
TCAATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACATCCCAGAC
Found at i:68288282 original size:42 final size:43
Alignment explanation
Indices: 68288176--68288287 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 43
68288166 TAAATACAAT
* * * *
68288176 GCCAATGTCCCAGACGTGGTCTTACATGTAATCAAACATTGAT
1 GCCAATGTCCCAGACGTGGTCTTACACGAAATCAAACATCGAA
* * * * * *
68288219 TCCACTGTCCCAGATAG-GGTCTTGCACGAAATCATATA-CGAA
1 GCCAATGTCCCAGA-CGTGGTCTTACACGAAATCAAACATCGAA
68288261 GCCAATGTCCCAGACGTGGTCTTACAC
1 GCCAATGTCCCAGACGTGGTCTTACAC
68288288 ACAAAACATA
Statistics
Matches: 53, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
41 1 0.02
42 23 0.43
43 28 0.53
44 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (43 bp):
GCCAATGTCCCAGACGTGGTCTTACACGAAATCAAACATCGAA
Found at i:68297439 original size:27 final size:27
Alignment explanation
Indices: 68297409--68297586 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68297399 ATATTGAGTC
* * * *
68297409 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68297436 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68297463 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68297491 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68297518 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68297545 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68297572 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68297587 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68297548 original size:82 final size:81
Alignment explanation
Indices: 68297430--68297585 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68297420 TGCTATATAA
* *
68297430 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
68297495 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68297512 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68297576 CACTTAGTGC
65 CACTTAGTGC
68297586 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68299537 original size:37 final size:37
Alignment explanation
Indices: 68299478--68299616 Score: 206
Period size: 37 Copynumber: 3.8 Consensus size: 37
68299468 AGCTCAGACG
* * *
68299478 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
68299515 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
68299552 TAATCTACACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
68299589 TAATCTCCACACGCAGTCATCAGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
68299617 TAGAGCTCGG
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 94 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:68299813 original size:47 final size:47
Alignment explanation
Indices: 68299735--68300289 Score: 842
Period size: 47 Copynumber: 11.6 Consensus size: 47
68299725 CCCTTCAGGA
* * *
68299735 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
68299782 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68299829 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68299876 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68299923 CTTATCACATATATCTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATA--TACACTTTCACATTCATCACATCGGCCATTAGGC
68299972 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *** *
68300019 CTTATCACATATATACACTTTCACATTTATTCAAATATACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCA-TCACATCGGCCATTAGGC
*
68300067 CTTATCACACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTAT--CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68300118 CTAATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68300165 CTTATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTAT--CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68300216 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68300263 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
68300290 TATTCAAATA
Statistics
Matches: 465, Mismatches: 31, Indels: 24
0.89 0.06 0.05
Matches are distributed among these distances:
46 2 0.00
47 310 0.67
48 18 0.04
49 55 0.12
50 3 0.01
51 57 0.12
52 20 0.04
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68300271 original size:244 final size:238
Alignment explanation
Indices: 68299735--68300303 Score: 899
Period size: 244 Copynumber: 2.4 Consensus size: 238
68299725 CCCTTCAGGA
* * * * *
68299735 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTT-GGCCCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATACA
* * *** *
68299799 CTTTCACATTCA-TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 CTTTCACATTTATTCAAATATACTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
68299863 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
130 TCGGCCATTAGGCCTAATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* * *
68299928 CACATATATCTACACTTTCACATTCATCACATCGGCTATTAGGC
195 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGAC
68299972 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
68300037 TTTCACATTTATTCAAATATACTATTAGGCCTTATCACACATATATATACACTTTCACATTCATC
66 TTTCACATTTATTCAAATATACTATTAGGCCTTAT--CAC--ATATATACACTTTCACATTCATC
*
68300102 ACATCGGCCATTCGGCCTAATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
127 ACATCGGCCATTAGGCCTAATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
68300167 TATCACACATATATATACACTTTCACATTCATCACATTGGCCATTCGAC
192 TAT--CACATATATATACACTTTCACATTCATCACATCGGCCATTAGAC
68300216 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
68300281 TTTCACATTTATTCAAATATACT
66 TTTCACATTTATTCAAATATACT
68300304 TCACATACCA
Statistics
Matches: 306, Mismatches: 18, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
236 2 0.01
237 67 0.22
238 18 0.06
240 3 0.01
242 89 0.29
244 127 0.42
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (238 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTTATTCAAATATACTATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTAATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATATATACACTTTCACATTCATCACATCGGCCATTAGAC
Found at i:68304452 original size:40 final size:40
Alignment explanation
Indices: 68304154--68304428 Score: 471
Period size: 40 Copynumber: 6.9 Consensus size: 40
68304144 TCTTTGGGGT
* *
68304154 TTAGCACGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
68304194 TTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GAGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGA-AC
68304234 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
68304274 TTAGTCTGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
68304314 TTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
68304354 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
68304394 TTAGTCCGGATACATCACTAGCACGAATGCTCTTC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTC
68304429 AGGATTTAGC
Statistics
Matches: 224, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
39 1 0.00
40 221 0.99
41 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
Found at i:68305767 original size:37 final size:37
Alignment explanation
Indices: 68305708--68305809 Score: 159
Period size: 37 Copynumber: 2.8 Consensus size: 37
68305698 AGCTCAGACG
* * * *
68305708 AAATCTTCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
68305745 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
68305782 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
68305810 TAGAGCTCGG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:68306187 original size:145 final size:141
Alignment explanation
Indices: 68305928--68306240 Score: 473
Period size: 145 Copynumber: 2.2 Consensus size: 141
68305918 CCCTTCGGGA
* * * * * *
68305928 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
* *
68305993 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACTTTCACATTCATCACATC
*
68306058 GGCCATTCGGC
131 GGCCATTAGGC
* *
68306069 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTAT--CAC--ATATAT
* *
68306134 ACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATACATACACTTTCACATTTATCA
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACTTTCACATTCATCA
68306199 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
68306214 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
68306241 TATTCAAATA
Statistics
Matches: 155, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
141 44 0.28
143 3 0.02
145 108 0.70
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:68306243 original size:47 final size:47
Alignment explanation
Indices: 68305928--68306240 Score: 473
Period size: 47 Copynumber: 6.6 Consensus size: 47
68305918 CCCTTCGGGA
* * * * * *
68305928 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68305975 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68306022 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68306069 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68306116 CTTATCACACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTAT--CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68306167 CTTATCACATACATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68306214 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
68306241 TATTCAAATA
Statistics
Matches: 243, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 194 0.80
49 6 0.02
51 43 0.18
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68308792 original size:26 final size:26
Alignment explanation
Indices: 68308763--68308843 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 26
68308753 GGCCACATAT
68308763 ATACTAATACTGGCAGCTTTGCTGCG
1 ATACTAATACTGGCAGCTTTGCTGCG
** * *
68308789 ATACTGCTGCTGGCAACTTTGCTGC-
1 ATACTAATACTGGCAGCTTTGCTGCG
* * **
68308814 ACTACTAGTACTAGCAGCTTCACTGCG
1 A-TACTAATACTGGCAGCTTTGCTGCG
68308841 ATA
1 ATA
68308844 TTGGTGTGTT
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
25 1 0.02
26 40 0.95
27 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
ATACTAATACTGGCAGCTTTGCTGCG
Found at i:68309525 original size:13 final size:13
Alignment explanation
Indices: 68309507--68309531 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68309497 CCGAAACTAG
68309507 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
68309520 AAAGAAAAAAAA
1 AAAGAAAAAAAA
68309532 ATGCTCATCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:68310705 original size:39 final size:40
Alignment explanation
Indices: 68310610--68310871 Score: 283
Period size: 39 Copynumber: 6.7 Consensus size: 40
68310600 TTGAATGATG
*
68310610 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
68310648 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
68310689 TCCGGGCTAAG-CCCGAAGGCATTTATGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
68310728 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
68310767 TCCGGGTTAAG-CCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
68310806 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
68310845 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
68310872 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 17, Indels: 17
0.85 0.07 0.07
Matches are distributed among these distances:
39 128 0.65
40 57 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:68314061 original size:39 final size:40
Alignment explanation
Indices: 68313908--68314168 Score: 272
Period size: 39 Copynumber: 6.7 Consensus size: 40
68313898 TTGACTGATG
*
68313908 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAT
* * * *
68313946 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
68313987 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
68314025 TCCGGGCTAAG-CCCAAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* * *
68314064 TCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
*
68314103 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAT
* *
68314142 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
68314169 AACGAGGAGC
Statistics
Matches: 195, Mismatches: 19, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
38 37 0.19
39 89 0.46
40 60 0.31
41 9 0.05
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
Found at i:68314190 original size:79 final size:79
Alignment explanation
Indices: 68313960--68314201 Score: 237
Period size: 79 Copynumber: 3.1 Consensus size: 79
68313950 GGACTAAGAT
* * * * **
68313960 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAG-CCGAAGGCATTTGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTGCAAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* *
68314023 ATTCCGGGCTAAG-C
65 AATCCGGGTTAAGTC
* * ** *
68314037 CCAAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
68314102 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
68314116 CCGAAGGCATTTGTGCGAA-TTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGC-AAGTTACTA-AATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* * *
68314178 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAGTC
68314195 CCGAAGG
1 CCGAAGG
68314202 TACGTGATTT
Statistics
Matches: 141, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
77 33 0.23
78 34 0.24
79 45 0.32
80 29 0.21
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:68321545 original size:47 final size:47
Alignment explanation
Indices: 68321467--68321917 Score: 620
Period size: 47 Copynumber: 9.6 Consensus size: 47
68321457 CCCTTCGGGA
** * * *
68321467 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
68321514 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68321561 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68321608 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
68321655 CTTATCACACATATACA-TGTTTACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
68321702 CTTATCACACATATACA-TGTTTACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * * *
68321749 TTTATCACACATACACACGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
68321796 CTTATCACACATACACACGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68321843 CTTATCACACATATACA-TGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
68321890 CCTATTCACACATATACACTTTCACATT
1 CTTA-TCACACATATACACTTTCACATT
68321918 TATTCAATTA
Statistics
Matches: 375, Mismatches: 24, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 353 0.94
48 20 0.05
49 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:68321617 original size:22 final size:22
Alignment explanation
Indices: 68321589--68321663 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
68321579 TTTCACATTC
68321589 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
68321611 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
68321635 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
68321658 ATCACA
1 ATCACA
68321664 CATATACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.45
23 5 0.13
24 5 0.13
25 11 0.29
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:68321687 original size:25 final size:25
Alignment explanation
Indices: 68321658--68321735 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
68321648 ATTCGGCCTT
68321658 ATCACACATATACATGTTTACTTTC
1 ATCACACATATACATGTTTACTTTC
* *** *** *
68321683 ATCACA-TTGGCCAT-TCGGCCTT-
1 ATCACACATATACATGTTTACTTTC
68321705 ATCACACATATACATGTTTACTTTC
1 ATCACACATATACATGTTTACTTTC
68321730 ATCACA
1 ATCACA
68321736 TTGGCCATTC
Statistics
Matches: 34, Mismatches: 16, Indels: 6
0.61 0.29 0.11
Matches are distributed among these distances:
22 6 0.18
23 8 0.24
24 8 0.24
25 12 0.35
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (25 bp):
ATCACACATATACATGTTTACTTTC
Found at i:68325975 original size:28 final size:28
Alignment explanation
Indices: 68325901--68325988 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
68325891 CAGCATGGCT
* *
68325901 ACCAG-AACAGAT-ATTGTGACAGAGTC
1 ACCAGAAACAGATAATTGTGGCAGAGCC
* * * *
68325927 -CTAGATATAGATAATTGTGGCAGGGCC
1 ACCAGAAACAGATAATTGTGGCAGAGCC
*
68325954 ACCAGAAACAGATATTTGTGGCAGAGCC
1 ACCAGAAACAGATAATTGTGGCAGAGCC
68325982 ACCAGAA
1 ACCAGAA
68325989 CGCTTCCTCC
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
25 3 0.06
26 5 0.10
27 11 0.23
28 29 0.60
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.19
Consensus pattern (28 bp):
ACCAGAAACAGATAATTGTGGCAGAGCC
Found at i:68329526 original size:13 final size:13
Alignment explanation
Indices: 68329508--68329533 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68329498 CTGTTTGGGG
68329508 TTCTTTTTTCTCT
1 TTCTTTTTTCTCT
68329521 TTCTTTTTTCTCT
1 TTCTTTTTTCTCT
68329534 CGAGTTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TTCTTTTTTCTCT
Found at i:68330999 original size:26 final size:26
Alignment explanation
Indices: 68330963--68331043 Score: 110
Period size: 26 Copynumber: 3.1 Consensus size: 26
68330953 GGCCACCTAT
*
68330963 ATACTGATACTAGCAGCTTTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
*
68330989 ATACTGCTACTGGCAGCTTTGCTGC-
1 ATACTGATACTGGCAGCTTTGCTGCG
* *
68331014 ACTACTGATACTGGTAGCTTTGTTGCG
1 A-TACTGATACTGGCAGCTTTGCTGCG
68331041 ATA
1 ATA
68331044 TTGGTGTGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 1 0.02
26 46 0.96
27 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.33
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTGCG
Found at i:68335681 original size:43 final size:43
Alignment explanation
Indices: 68335632--68335772 Score: 219
Period size: 43 Copynumber: 3.3 Consensus size: 43
68335622 ATTACGTCTG
*
68335632 CTAGGCTCGAAGCCTGATAGTAACTCACCGGCATTATAGCCTA
1 CTAGGCTCGAAGCCTGATATTAACTCACCGGCATTATAGCCTA
* **
68335675 CTAGGCTCGAAGCCCGATATTAACTCACCAACATTATAGCCTA
1 CTAGGCTCGAAGCCTGATATTAACTCACCGGCATTATAGCCTA
* *
68335718 CTAGGCTTGAAGCCTGATATTAACTCACCGGCATTATAGCCTG
1 CTAGGCTCGAAGCCTGATATTAACTCACCGGCATTATAGCCTA
*
68335761 CTAAGCTCGAAG
1 CTAGGCTCGAAG
68335773 GCCCGAATAG
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (43 bp):
CTAGGCTCGAAGCCTGATATTAACTCACCGGCATTATAGCCTA
Found at i:68343549 original size:18 final size:18
Alignment explanation
Indices: 68343526--68343561 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
68343516 ATTGTAGACC
68343526 TTCTAATTGGTCGTTATG
1 TTCTAATTGGTCGTTATG
68343544 TTCTAATTGGTCGTTATG
1 TTCTAATTGGTCGTTATG
68343562 AGTACCGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.22, T:0.50
Consensus pattern (18 bp):
TTCTAATTGGTCGTTATG
Found at i:68372924 original size:26 final size:26
Alignment explanation
Indices: 68372853--68372933 Score: 83
Period size: 26 Copynumber: 3.1 Consensus size: 26
68372843 GGCCACATAT
68372853 ATACTGATACTAGCAGCTTTGCTGCG
1 ATACTGATACTAGCAGCTTTGCTGCG
* * * *
68372879 ATACTGCTATTGGCAACTTTGCTGC-
1 ATACTGATACTAGCAGCTTTGCTGCG
* * *
68372904 ACTACTGGTACTAACAGCTTTGCTACG
1 A-TACTGATACTAGCAGCTTTGCTGCG
68372931 ATA
1 ATA
68372934 TTGGTATATT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
25 1 0.02
26 41 0.95
27 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (26 bp):
ATACTGATACTAGCAGCTTTGCTGCG
Found at i:68373515 original size:16 final size:17
Alignment explanation
Indices: 68373494--68373526 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
68373484 CACATTGAAG
68373494 TGTTTT-TTGAAAACCT
1 TGTTTTATTGAAAACCT
68373510 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
68373527 CTTCTTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.45
Consensus pattern (17 bp):
TGTTTTATTGAAAACCT
Found at i:68375054 original size:16 final size:16
Alignment explanation
Indices: 68375033--68375063 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68375023 CCAAACTTCT
68375033 GGCTTTTCAGCATTTC
1 GGCTTTTCAGCATTTC
*
68375049 GGCTTTTCAGGATTT
1 GGCTTTTCAGCATTT
68375064 GTCAGTCTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.45
Consensus pattern (16 bp):
GGCTTTTCAGCATTTC
Found at i:68377280 original size:93 final size:93
Alignment explanation
Indices: 68377166--68377337 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
68377156 CGCCCATAAG
* * *
68377166 CGAACTCGGAATCAACTCAACGAGCTCGGGCGTTTGCATCCATGAGTGAAATCGAACTCAACTCA
1 CGAACTCGGAATCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAAATCGAACTCAACTCA
*
68377231 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGAATGCCTAGTTACATCTCA
* * * *
68377259 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGAATCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAAATCGAACTCAACTCA
68377324 ACGAGTTCGAATGC
66 ACGAGTTCGAATGC
68377338 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGAATCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAAATCGAACTCAACTCA
ACGAGTTCGAATGCCTAGTTACATCTCA
Found at i:68377326 original size:46 final size:46
Alignment explanation
Indices: 68377159--68377332 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
68377149 TGTAACCCGC
* * * *
68377159 CCATAAGCGAACTCGGAATCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * * *
68377205 CCATGAGTGAAATCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
68377255 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
68377298 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
68377333 AATGCTCAAC
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 57 0.55
47 27 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:68383250 original size:80 final size:80
Alignment explanation
Indices: 68383140--68383318 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
68383130 AAATCACGTA
* * ** *
68383140 CCTTCGGAATTTAA-CCGGATATAGCTACTCGTTCAAATGCCTTCGGGA-CATAGCCCGGTTATA
1 CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAATGCCTTC-GGATCATAGCCCGGATATA
* *
68383203 GTAAC-TCGCACAATTG
65 GTAACTTAGCACAA-AG
* * * *
68383219 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATG
1 CCTTCGGGACTTAACCCGGATATAGCT-ACTCGCACAAATGCCTTCGGATCATAGCCCGGATATA
*
68383283 GTCACTTAGCACAAAG
65 GTAACTTAGCACAAAG
*
68383299 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
68383319 CATCATTCAA
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 16 0.19
80 60 0.72
81 7 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAATGCCTTCGGATCATAGCCCGGATATAG
TAACTTAGCACAAAG
Found at i:68383278 original size:40 final size:40
Alignment explanation
Indices: 68383173--68383318 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
68383163 GCTACTCGTT
*
68383173 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
68383213 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
68383253 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
68383294 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68383319 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.03
40 75 0.82
41 13 0.14
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:68390945 original size:40 final size:40
Alignment explanation
Indices: 68390908--68391000 Score: 143
Period size: 40 Copynumber: 2.3 Consensus size: 40
68390898 GCTACTCGTT
*
68390908 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
68390948 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
68390988 CAAATGCCTTCGG
1 CAAATGCCTTCGG
68391001 ATCTTAGTCA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 46 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:68392899 original size:21 final size:21
Alignment explanation
Indices: 68392875--68392914 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
68392865 TGTTTCAGGG
*
68392875 AAAAATTTTCTAAGTTTTCCC
1 AAAAATTTTCAAAGTTTTCCC
*
68392896 AAAATTTTTCAAAGTTTTC
1 AAAAATTTTCAAAGTTTTC
68392915 AGTTTAGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (21 bp):
AAAAATTTTCAAAGTTTTCCC
Found at i:68415782 original size:40 final size:40
Alignment explanation
Indices: 68415722--68415939 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
68415712 TGGATGATAA
** * * *
68415722 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTGACTAGT-C
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
68415762 CCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
68415802 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68415842 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
68415882 CCGGGCTATGTCTCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
68415922 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68415940 TACTTGGCTT
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 15 0.09
40 146 0.91
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68423975 original size:40 final size:40
Alignment explanation
Indices: 68423916--68424133 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
68423906 TGGATGATAA
* * * *
68423916 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-C
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
68423956 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68423996 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68424036 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
68424076 TCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
68424116 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68424134 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 16 0.10
40 144 0.90
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68434635 original size:39 final size:39
Alignment explanation
Indices: 68434581--68434733 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
68434571 CAGTGATGTT
* *
68434581 TATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
68434620 TATCCGGAGTTAGGGTTCGCAGGCTATGTGTTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
68434659 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
68434698 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
68434734 ATATGTCTGG
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:68434757 original size:78 final size:78
Alignment explanation
Indices: 68434581--68434761 Score: 220
Period size: 78 Copynumber: 2.3 Consensus size: 78
68434571 CAGTGATGTT
** * * * * *
68434581 TATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTATATCCGGAGTTAGGGTTCGCAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
* * *
68434646 TGTGTTGGAATTA
66 CGTGCTGGAAATA
*
68434659 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
68434724 CGTGCTGGAAATA
66 CGTGCTGGAAATA
* * *
68434737 TGTCTGG-GTTAAAGTCCCGCAGGCT
1 TATCCGGACTTAAAGT-CCGCAGGCT
68434762 TCGAGCTAGT
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
77 6 0.07
78 83 0.93
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.28
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
CGTGCTGGAAATA
Found at i:68462520 original size:93 final size:93
Alignment explanation
Indices: 68462408--68462673 Score: 381
Period size: 93 Copynumber: 2.9 Consensus size: 93
68462398 CGCCCATAAG
* *
68462408 CGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTTAGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTCGGA-CGTTCGCATCCATAAGTGAACTCAGACTCAACTC
* *
68462472 AATGAGCTCGGATGCCTAATTACATCTCA
65 AACGAGTTCGGATGCCTAATTACATCTCA
* *
68462501 CGAACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCTATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
* ** *
68462566 ACAAGTTCAAATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAATTACATCTCA
* * * * *
68462594 TGAACTCGAACTCAACTCAACGAGTTCGGATGTTCACATCCATGAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
68462659 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
68462674 CAAATATCAG
Statistics
Matches: 152, Mismatches: 20, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
93 150 0.99
94 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAATTACATCTCA
Found at i:68462658 original size:46 final size:46
Alignment explanation
Indices: 68462401--68462671 Score: 198
Period size: 46 Copynumber: 5.8 Consensus size: 46
68462391 TGTAACCCGC
* * * * *
68462401 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA-TGTTCACAT
* * * *
68462447 CCATAAGTGAACTTAGACTCAACTCAATGAGCTCGGATGCCTAATTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG--T--TCACAT
* * * * * *
68462497 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCACAT
* * ** *
68462540 CTATAAGTGAACTCAGACTCAACTCAACAAGTTCAAATGCCTAGTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG--T--TCACAT
*
68462590 -C-TCA-TGAACTC-GAACTCAACTCAACGAGTTCGGATGTTCACAT
1 CCATAAGTGAACTCAG-ACTCAACTCAACGAGTTCGGATGTTCACAT
*
68462633 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
68462672 CCCAAATATC
Statistics
Matches: 173, Mismatches: 35, Indels: 34
0.71 0.14 0.14
Matches are distributed among these distances:
43 9 0.05
44 1 0.01
45 6 0.03
46 87 0.50
47 55 0.32
48 6 0.03
49 1 0.01
50 8 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCACAT
Found at i:68465870 original size:12 final size:12
Alignment explanation
Indices: 68465840--68465879 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
68465830 TCAAAATGTG
68465840 CACTTGAGCTTA
1 CACTTGAGCTTA
68465852 C-CTTGAGCTTA
1 CACTTGAGCTTA
68465863 CACTTGAGCTTA
1 CACTTGAGCTTA
68465875 CACTT
1 CACTT
68465880 TGATGATCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.35
Consensus pattern (12 bp):
CACTTGAGCTTA
Found at i:68472385 original size:40 final size:40
Alignment explanation
Indices: 68472330--68472507 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
68472320 CGGATGATAA
*
68472330 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
68472370 CCGGGCTAAGTCCCGAATGCATTTGTGCGAGTTAATATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
68472410 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
68472450 CCGGGCTAAGTCCCGAAGGCATTTGAGCG-GGTAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
68472490 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68472508 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 18 0.14
40 110 0.86
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68474083 original size:42 final size:42
Alignment explanation
Indices: 68474026--68474113 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
68474016 GTGCAGGGGG
* *
68474026 CACACAGCCAAACGACACGCCTATAGGGCTGACCGTGTGTCA
1 CACACAGCCAAACGACACGCCCATAGGGCTGACCATGTGTCA
** * *
68474068 CACACAGCTGAACGACATGCCCATGGGGCTGACCATGTGTCA
1 CACACAGCCAAACGACACGCCCATAGGGCTGACCATGTGTCA
68474110 CACA
1 CACA
68474114 TGGCGTAGAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.28, C:0.33, G:0.24, T:0.15
Consensus pattern (42 bp):
CACACAGCCAAACGACACGCCCATAGGGCTGACCATGTGTCA
Found at i:68480502 original size:26 final size:26
Alignment explanation
Indices: 68480473--68480540 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
68480463 CCTGAAGATT
68480473 TATGCTCACACGAGCTGTGAAATGAG
1 TATGCTCACACGAGCTGTGAAATGAG
** *
68480499 TATGCTCACATTAGCTGTGAAATGGG
1 TATGCTCACACGAGCTGTGAAATGAG
** *
68480525 CCTACTCACACGAGCT
1 TATGCTCACACGAGCT
68480541 ATGGGTCGGA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (26 bp):
TATGCTCACACGAGCTGTGAAATGAG
Found at i:68483494 original size:27 final size:27
Alignment explanation
Indices: 68483460--68483823 Score: 485
Period size: 27 Copynumber: 13.5 Consensus size: 27
68483450 TTTACCAAAC
*
68483460 TACCAAAAAACCCCTGGTTTGTAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
* * *
68483487 TACTAAAATACCCTTGGTTTATAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
*
68483514 CACCAAAATACCCCTGGTTTGTAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
* **
68483541 TACCAAAATACCCTTGGTTTACAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
68483568 TACCAAAATACCCCTGGTTTGTAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
* * * *
68483595 TACTAAAATACCCTTTGTTTATAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
*
68483622 TACCAAAATACCCCTAGTTTGTAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
68483649 TACCAAAATACCCCTGGTTTGTAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
* ** * *
68483676 TACTAAAATACCTTTTGTTTATAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
68483703 TACCAAAATACCCCTGGTTTGTAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
*
68483730 TACCAAAATATCCCTGGTTTGTAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
* * *
68483757 TATCAAAATACCCCTAGTTAGTAAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
* ** *
68483784 TACCAAAATATCCCTAATTTGTGAAAT
1 TACCAAAATACCCCTGGTTTGTAAAAT
*
68483811 TACTAAAATACCC
1 TACCAAAATACCC
68483824 TCGACCTGTA
Statistics
Matches: 291, Mismatches: 46, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 291 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCAAAATACCCCTGGTTTGTAAAAT
Found at i:68483603 original size:81 final size:81
Alignment explanation
Indices: 68483460--68483877 Score: 491
Period size: 81 Copynumber: 5.2 Consensus size: 81
68483450 TTTACCAAAC
* * * * * *
68483460 TACCAAAAAACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATAC
1 TACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATAC
68483525 CCCTGGTTTGTAAAAT
66 CCCTGGTTTGTAAAAT
* **
68483541 TACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATAC
1 TACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATAC
* * *
68483606 CCTTTGTTTATAAAAT
66 CCCTGGTTTGTAAAAT
*
68483622 TACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATAC
1 TACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATAC
** * *
68483687 CTTTTGTTTATAAAAT
66 CCCTGGTTTGTAAAAT
*
68483703 TACCAAAATACCCCTGGTTTGTAAAATTACCAAAATATCCCTGGTTTGTAAAATTA-TCAAAATA
1 TACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AAAATA
* *
68483767 CCCCTAGTTAGTAAAAT
65 CCCCTGGTTTGTAAAAT
* ** * * *** * *
68483784 TACCAAAATATCCCTAATTTGTGAAATTACTAAAATA-CCCTCGACCTGTAAAATTATTGAAATA
1 TACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACTAAAATA
**
68483848 -CCCTCGACTTGTAAAAT
65 CCCCT-GGTTTGTAAAAT
*
68483865 TACCAAAGTACCC
1 TACCAAAATACCC
68483878 TTGATTTACA
Statistics
Matches: 294, Mismatches: 39, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
80 9 0.03
81 284 0.97
82 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
TACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATAC
CCCTGGTTTGTAAAAT
Found at i:68483837 original size:27 final size:27
Alignment explanation
Indices: 68483807--68483878 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
68483797 CTAATTTGTG
68483807 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACTAAAATACCCTCGACCTGTA
* * *
68483834 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGACCTGTA
* *
68483861 AAATTACCAAAGTACCCT
1 AAATTACTAAAATACCCT
68483879 TGATTTACAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGACCTGTA
Found at i:68484081 original size:26 final size:27
Alignment explanation
Indices: 68483924--68484083 Score: 182
Period size: 27 Copynumber: 6.0 Consensus size: 27
68483914 AAAATTATCA
* * *
68483924 AAATACCCTTATAGGGTAGAAAT-CTCG
1 AAATACCCCTGTAGGGTAGAATTAC-CG
*
68483951 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
68483978 AAATACCCCTGTAAGGTAGAATTACC-
1 AAATACCCCTGTAGGGTAGAATTACCG
*
68484004 AGAATACCCCTTTAGGGTAGAATTACCG
1 A-AATACCCCTGTAGGGTAGAATTACCG
*
68484032 AAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
68484059 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
68484084 ATTTTGCCCC
Statistics
Matches: 115, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
26 17 0.15
27 96 0.83
28 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:68484542 original size:22 final size:22
Alignment explanation
Indices: 68484509--68484573 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
68484499 TTAAAGCCTT
* *
68484509 CTAATTATGGCTTTGTGTCAAC
1 CTAATTATGGCTCTGTGCCAAC
68484531 CTACA-TATGGCTCTGTGCCAAC
1 CTA-ATTATGGCTCTGTGCCAAC
* *
68484553 TTAATTATGGCTGTGTGCCAA
1 CTAATTATGGCTCTGTGCCAA
68484574 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (22 bp):
CTAATTATGGCTCTGTGCCAAC
Found at i:68484771 original size:27 final size:27
Alignment explanation
Indices: 68484739--68484833 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 27
68484729 TAAGTGAATT
* *
68484739 TGCCACATTATCTGTTTCTGGTGGCTA
1 TGCCACAATATCTGTTTCTGGTGGCTC
*
68484766 TGCCACAAATATTTG-TTCTGGTGGCTC
1 TGCCAC-AATATCTGTTTCTGGTGGCTC
* * *
68484793 TGCCATAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTTTCTGGTGGCTC
*
68484820 TGTCACAATATCTG
1 TGCCACAATATCTG
68484834 ATAACTGAGC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.12
27 44 0.77
28 6 0.11
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTTTCTGGTGGCTC
Found at i:68485023 original size:31 final size:31
Alignment explanation
Indices: 68484969--68485079 Score: 141
Period size: 31 Copynumber: 3.5 Consensus size: 31
68484959 TTGTATTCAC
* *
68484969 ATTCTGATTTTTTATTCTATTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
* *
68485001 ATTCTCATTTTGATTCTGTTACCTGACACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
68485032 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
68485063 ATTCTGATTTTGATTCT
1 ATTCTGATTTTGATTCT
68485080 AGTTCTGATA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
31 62 0.91
32 6 0.09
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:68485038 original size:6 final size:6
Alignment explanation
Indices: 68484992--68485088 Score: 56
Period size: 6 Copynumber: 15.8 Consensus size: 6
68484982 ATTCTATTAC
* * * **
68484992 CTGATA CTGATT CTCATT TTGATT CTG-TT ACCTGACA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
68485041 CTGATT CTG-TCAC CTAATT CTGATT CTGATT TTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
68485089 AATGTTTCGT
Statistics
Matches: 68, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
5 4 0.06
6 57 0.84
7 6 0.09
8 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:68488561 original size:28 final size:28
Alignment explanation
Indices: 68488511--68488601 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
68488501 GTGACAGAGT
* *
68488511 CACCAGATACTGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
68488540 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
*
68488568 CACCAGAACAGATAACTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
68488596 CACCAG
1 CACCAG
68488602 GATGCTTCCT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
28 49 0.88
29 7 0.12
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:68488754 original size:28 final size:28
Alignment explanation
Indices: 68488711--68488771 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
68488701 TAACCCTAGA
*
68488711 GGTATAAAGGTCATTTAGCATACATAGG
1 GGTATAAAGGTAATTTAGCATACATAGG
* *
68488739 GGTATAATGGTAATTTTGCATACATAGG
1 GGTATAAAGGTAATTTAGCATACATAGG
68488767 GGTAT
1 GGTAT
68488772 TCTAGTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.08, G:0.26, T:0.33
Consensus pattern (28 bp):
GGTATAAAGGTAATTTAGCATACATAGG
Found at i:68496410 original size:28 final size:28
Alignment explanation
Indices: 68496371--68496461 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
68496361 TGTGACGAGT
*
68496371 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
68496400 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
68496428 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
68496456 CACCAG
1 CACCAG
68496462 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:68496613 original size:27 final size:28
Alignment explanation
Indices: 68496567--68496630 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
68496557 AAATTAACCC
*
68496567 TAGGGGTATAAAGGTCA-TTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
68496594 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
68496622 TAGGGGTAT
1 TAGGGGTAT
68496631 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 15 0.44
28 19 0.56
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:68503263 original size:27 final size:27
Alignment explanation
Indices: 68503232--68503409 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
68503222 TAAATTGTAC
68503232 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68503259 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68503285 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
68503313 GGCACTAAGTGTGCAAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68503341 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68503368 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68503395 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68503410 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68503346 original size:82 final size:81
Alignment explanation
Indices: 68503233--68503388 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
68503223 AAATTGTACA
* * *
68503233 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCAATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68503297 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68503314 GCACTAAGTGTGCAAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCAA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68503379 TGCGAGTTGA
65 TGCGAATTGA
68503389 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCAATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68503400 original size:82 final size:81
Alignment explanation
Indices: 68503229--68503408 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 81
68503219 GATTAAATTG
* * *
68503229 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCAATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68503294 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68503310 TGCGGCACTAAGTGTGCAAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCAA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68503374 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68503392 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
68503409 GGACTCAATA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCAATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68511287 original size:39 final size:39
Alignment explanation
Indices: 68511215--68511385 Score: 234
Period size: 39 Copynumber: 4.4 Consensus size: 39
68511205 GGTCTTTAAC
* ** ** *
68511215 CCGGATATTTTTCCAGCACGTAGTTTGCAGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
* * *
68511254 CCAGATATATTTCCAGCATATAGCTTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
**
68511293 CCGGATATATTTCCAGCATATAGCCTGTGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
68511332 CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
*
68511371 CCGGACATATTTCCA
1 CCGGATATATTTCCA
68511386 ATCTTATATA
Statistics
Matches: 119, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 119 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCAGACCTCATGT
Done.